LOCUS       DATDUB010000001         2535 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_334552, whole genome shotgun sequence.
ACCESSION   DATDUB010000001 DATDUB010000000
VERSION     DATDUB010000001.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2535)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2535)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2535
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_334552"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1107)
                     /locus_tag="VJA84_00005"
     CDS             complement(<1..1107)
                     /locus_tag="VJA84_00005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013821491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HLD40541.1"
                     /translation="MPTYTRLPLIFLKGKGMKLIDIDGKSYLDFFPGWGVSSLGHCHP
                     DVVSAARDQINKLIHLPNNYLSLPQARLAKEIILQSFPGKVFFANSGAEANEAAVKLT
                     RAYGKGRYEIISFENSFHGRTLACLTMTGQTKYQEGFQPLPEGFKTVPFNDIGAVEKA
                     LNDKTAGIILELIQGEGGINIAVNDFVLGLRKICDEKKILLIIDEVQTGLGRTGKMFA
                     YEHYGIIPDIMTLAKALGGGLPIGAIVARKEISNTLTAGTHASTFGGSPLICKASLAV
                     FKAIHKEKLLKNAVEMGGYLKEKLSALAQKYAIIKEIRGMGLMLGIELTIPGKEIVEE
                     CLKDGLLINCTHDKVLRLMPALNVTKKQADKAVGI"
     gene            complement(1254..2111)
                     /gene="argB"
                     /locus_tag="VJA84_00010"
     CDS             complement(1254..2111)
                     /gene="argB"
                     /locus_tag="VJA84_00010"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013799422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003991 - acetylglutamate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006592 - ornithine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HLD40542.1"
                     /translation="MEEAIRKADVLIEALPYIKDFHRKIMVIKYGGSILGEEKIRSGV
                     MEDIVFLSYMGLCPVLVHGGGPNISERMKSEGLKTEFVDGMRVTDEKTLFVVEEELSK
                     LNALIVSEIQELGGRAIGFAGSARSVITARKKLEGGRDLGSVGEAESIAAELIKNETK
                     NYTVCVISPMGKDKAGKIYNINADDVAAKAAVELGAEKLMVLTNVRGIMRSIDEPGSL
                     ISTLSVQEARKLIKEGAVQSGMIPKVKSCVSALDGGVKKTHIIDARISHALLLEIFTK
                     EGIGTEIIR"
     gene            complement(2217..>2535)
                     /locus_tag="VJA84_00015"
     CDS             complement(2217..>2535)
                     /locus_tag="VJA84_00015"
                     /inference="COORDINATES: protein motif:HMM:NF014065.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004358 - glutamate N-acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="bifunctional ornithine
                     acetyltransferase/N-acetylglutamate synthase"
                     /protein_id="HLD40543.1"
                     /translation="GATKFITIEVSGARNDQQAKQAALAIANSNLFKTAVYGENRNLG
                     RVIAAVGSSGVEVKEDASVKCSSLKNKFVKVRVDLKTGSGTARVYTSDLTPEYIRINA
                     EYN"
BASE COUNT          590 a          700 c          504 g          741 t
ORIGIN      
        1 tattcccacg gccttgtccg cctgtttctt ggtaacatta agggccggca taagccgcaa
       61 gactttatcg tgggtgcagt taatcaacag gccgtctttg aggcattcct caacaatctc
      121 tttgccgggt atggttaatt caatccccag catcaagccc atccctctta tttcctttat
      181 aatagcatat ttttgggcta aggcggataa tttttctttt aaatatccgc ccatctctac
      241 ggcattctta agcagtttct ctttatgaat agccttaaat accgccaaag aggccttaca
      301 gataagcgga ctgcccccaa aagtagaggc atgtgttccg gcagtcaggg tattggaaat
      361 ctcttttctg gctactattg ccccgattgg caggcctccg cccaaggcct tagccagggt
      421 cattatatcc gggataatcc cgtaatgctc ataggcaaac atcttgccgg tccggcctaa
      481 cccagtctgc acctcatcaa taatcaaaag tatctttttt tcatcacaaa tcttccttaa
      541 tcccaaaacg aagtcattaa cggcgatatt gattccgcct tccccctgga ttaactccag
      601 gataattccc gcggtcttat cgttaagggc cttttccacg gcgccgatat cattgaaagg
      661 cacggtctta aaaccctcgg gaaggggctg aaaaccttcc tgatactttg tctgtccggt
      721 catagtcagg caggccaatg tccgtccgtg aaaggagttt tcaaaagaga ttatctcata
      781 tctgcctttg ccgtaggccc gggtaagctt tactgccgcc tcattggctt cagccccgga
      841 gttggcgaag aacaccttcc cggggaaaga ctgaaggatt atttccttgg ccagcctggc
      901 ctggggaagg gataaataat tattaggcag atgtataagt ttatttatct ggtcccgcgc
      961 tgccgagacc acatccggat ggcaatgccc cagagaactc accccccagc cgggaaagaa
     1021 atccaggtag ctcttaccgt caatatcaat cagcttcatc cctttgcctt tgagaaatat
     1081 cagaggcagc cgggtatagg tcggcattat gtaatcctga taggcttgga atatttcctc
     1141 ttttttcacc tgaaaatctc ccgatcaact cattaatcaa gggtctatag tcaatagtct
     1201 atggtctatg gtttttgtct tctatcgact atcgaccatc gacccttaat tttttatcta
     1261 attatttctg tcccgatccc ttctttggta aaaatctcta aaagcaaagc gtgagaaatc
     1321 cgggcgtcaa ttatatgggt ctttttcact cctccatcca aagcgctgac gcaggacttg
     1381 actttaggga tcatcccgga ctggaccgcg ccttctttaa tcaatttcct ggcctcctga
     1441 actgataagg tggaaatcaa agaccccggc tcatctatag aacgcattat cccccggaca
     1501 ttggttaaaa ccatcagttt ttccgccccc agctccaccg cggccttggc cgcgacatca
     1561 tcggcattga tattatagat tttcccggct ttgtcttttc ccatcgggct gatcacgcag
     1621 actgtgtaat ttttagtctc gtttttaatt aattccgccg cgattgactc agcttcgcca
     1681 actgacccta agtccctgcc cccttcaagt tttttcctgg ccgtgattac gctcctggcg
     1741 cttccggcaa agcctatggc cctgcctcct aactcttgta tttccgagac gataagcgcg
     1801 tttaatttgc ttaattcctc ctcaactacg aatagggttt tctcgtcggt aacccgcatc
     1861 ccgtccacaa actcggtttt taatccttcg gatttcatcc tctcggatat attcggcccg
     1921 cccccgtgga ccagcaccgg gcaaagcccc atatagctta agaagacaat atcttccatc
     1981 accccggagc gtatcttttc ctctcccagg atactgcccc cgtattttat caccataatc
     2041 ttacggtgga aatccttgat ataaggcaag gcctcaatta aaacatccgc tttcctgatt
     2101 gcttcttcca ttttaaaaat cgcagaacta cgcagaacct tacgctgaac tacgcaatat
     2161 tatttataaa attatgcgtg gtttcgcgta ccgttccgcg ttgttccgcg ctctctttag
     2221 ttatattccg cgtttatcct gatgtattcc ggagtcaggt ccgaggtata gaccctggct
     2281 gtgccggaac cggtttttag atccactctt acttttacga atttattctt taacgatgaa
     2341 catttaacgc ttgcatcttc ctttacctca acccctgatg agcccaccgc cgcgatcacc
     2401 cggcccaagt tgcggttttc cccgtatacg gcggtcttaa aaagattgga attggctata
     2461 gccaaagccg cctgcttcgc ctgctgatca ttcctggccc cggacacctc tatggtaata
     2521 aactttgtgg ccccc
//
LOCUS       DATDUB010000002         3891 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_2341536, whole genome shotgun sequence.
ACCESSION   DATDUB010000002 DATDUB010000000
VERSION     DATDUB010000002.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3891)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3891)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3891
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2341536"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..446)
                     /locus_tag="VJA84_00020"
     CDS             complement(<1..446)
                     /locus_tag="VJA84_00020"
                     /inference="COORDINATES: protein motif:HMM:NF024882.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK 4TM domain-containing
                     protein"
                     /protein_id="HLD40544.1"
                     /translation="MNSRHLNEIKGIVIFAVGILVLLGLISYTARDISFLAHPINSPA
                     KNLIRVSGAWLSFGLFFLIGWVSFVLPLMLFSWGAAKFRDRVFFDPFRIPGFILLIIS
                     LSALMGNSSAQEAISFERGGLLGFVCAQFLVSYFGSTGSWVIAVSLA"
     gene            complement(674..2755)
                     /gene="pnp"
                     /locus_tag="VJA84_00025"
     CDS             complement(674..2755)
                     /gene="pnp"
                     /locus_tag="VJA84_00025"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007956406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004654 - polyribonucleotide
                     nucleotidyltransferase activity [Evidence IEA];
                     GO_process: GO:0006402 - mRNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HLD40545.1"
                     /translation="MEELKQTSIKIGKEDLIVETGRMAKQANGSVVVRYGGTVVLVTA
                     CISKDPREGVSFFPLTVEYQEKTYAAGRIPGGFFKREGRPSESEILTARLIDRPIRPL
                     FPKGMTQDVQVIAIVLSSDGLNDPDVLAVNGASCALAISDIPFNGPIGAVRVGWLDNQ
                     FVLNPTYSETEASRLDLVVVGNRERVIMIESKVKELSEELVLEGIRFGFEGLQGIIAL
                     QENFAKVTGAKKAVIEYKKTDEKLSTQVEASSKDRLKEICRLSGKEQREEAVESLNRE
                     LKEKLAAQGYEASSVRQALEEVEKGIVRDYILEKGIRVDGRNPSEIRKITCEIGPLPR
                     THGSALFTRGQTQSLSITTLGSSSDEQRIESLEGETAKSFMLHYSFPPFSVGETSPMR
                     GPGRREIGHGALAEKALSMVMPSKEEFPYTVRVVSEILESNGSSSMATVCASTLSLMD
                     AGVPIKKPVAGIAMGLIKDGRRSIILTDISGIEDHFGDMDFKVAGTRDGITAIQMDLK
                     IDGIELGLVSQIIADAKKARFVVLDKMQDAISEPRKELSSFAPRITVLKIPTEKIGEL
                     IGPGGKNIKKIIATSGAAVDIEDDGSVFVSSSDPAASQKAVDMIKGMTEMPEVGKIYT
                     GKIKRIMAFGAFAEFLPNKEGLIHVSELADKFVKNVEDVVKVGDEVKVKIVGIDEMGR
                     VNLSRKQAEAK"
     gene            complement(2857..3126)
                     /gene="rpsO"
                     /locus_tag="VJA84_00030"
     CDS             complement(2857..3126)
                     /gene="rpsO"
                     /locus_tag="VJA84_00030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006211281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HLD40546.1"
                     /translation="MAIEKTKKQKIISEHKEHTKDTGGSAVQAALLTERINQLGDHFK
                     AHKKDHHSRRGLLKMVSQRRKLLNYLKKEDTKKYQELLDKLNLRK"
     gene            complement(3226..>3891)
                     /locus_tag="VJA84_00035"
     CDS             complement(3226..>3891)
                     /locus_tag="VJA84_00035"
                     /inference="COORDINATES: protein motif:HMM:NF024878.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing phosphohydrolase"
                     /protein_id="HLD40547.1"
                     /translation="ELGYVSLDLEARNKELEAALEKLKEEQRKNEQYYFQTMHSLVKA
                     LEEKDPYTAGHSERVGFYSTELAVGLGLDKKESEAVNKAAYLHDIGKIGLPDAVLHKK
                     EKLSDEDFAHIKRHMMDGAKILEGLPFMEGAIPYVLYHHERYDGRGYPHGLSGNMIPR
                     GAQIIAIADSFDAMTTGRGYNKPLMLEEAVGELKKSSGAQLNPVYVTKFIELLEEKKI
                     KAI"
BASE COUNT          964 a         1079 c          827 g         1021 t
ORIGIN      
        1 gccaggctta cggcaatcac ccaggagccg gttgagccga aataagaaac taagaattgg
       61 gcgcaaacga accccagcaa gccgccccgc tcaaaactta ttgcttcttg ggccgagctg
      121 ttccccatta acgcgctcaa agaaatgata agcaggatga atccggggat ccgaaaagga
      181 tcaaagaaaa ccctatcccg gaatttggca gcgccccagg aaaacaacat taaaggaagg
      241 acaaaactga cccatccgat caggaaaaac aggccgaagg acagccaggc cccggagacg
      301 cggataagat ttttagccgg tgaatttatc gggtgagcta aaaaagagat atctcgcgcg
      361 gtataggaaa ttaatcccag aagaaccaaa atcccgaccg cgaagataac aatgccttta
      421 atttcattta gatggcggga attcatagaa agtcaaaagt caaaagtcaa aagtcaaaat
      481 tgcaatccaa aatccaaaag ttttaatttt tgaattcaga ctgtgtcgta atagtaaaat
      541 gcgtgtcatt gcgaactccg aaggggtgaa acaatcctgt ttttgagatt gccgcgtcgc
      601 ctgcggctcc tcgcaatgac attgcggcac agcctgattg cgatttttga gttttgcgtt
      661 ttgacttttt agtttatttc gcttcggcct gttttctgct taagttcacc cggcccatct
      721 cgtcaatgcc cacaatcttg accttgacct catcgccgac tttgaccaca tcctcaacat
      781 tcttgacaaa cttatcagcc aattccgaga cgtggatcag accctcctta ttgggcagga
      841 actccgcgaa ggccccaaag gccataatcc gcttgatttt gccggtatat attttgccca
      901 cctccggcat ctcggtcatc cccttaatca tatccaccgc cttctgggag gccgccgggt
      961 cgctggaaga gacaaagacc gaaccgtcgt cctcaatgtc aaccgcggcc ccgctggtgg
     1021 cgattatctt cttgatattc ttgcctcccg ggccgatcaa ctccccgatc ttctcggtgg
     1081 ggatcttaag cacagtgatc ctgggagcaa aggaagacag ttccttacgc ggttcagaga
     1141 tcgcatcctg catcttatcc aggacaacaa acctggcctt tttggcatcg gcgataatct
     1201 gggacaccag gccaagctca atcccgtcta ttttcagatc catctggata gcggttatgc
     1261 catctctggt gccagccacc ttaaaatcca tatctccaaa atggtcttca atcccgctga
     1321 tatcagtgag gataatactg cgccggccat ccttgattaa gcccatcgct ataccggcaa
     1381 ccggtttttt tataggcacc ccagcatcca taagcgacag ggttgaggcg cagactgtag
     1441 ccatactgga ggaaccgtta gattccagga tctcggaaac caccctaacc gtataaggaa
     1501 actcctcctt ggaaggcatt accatagaca aggccttctc ggccagggcg ccgtggccga
     1561 tctcccggcg tccggggccg cgcatcggag aggtctctcc cacagaaaac ggcgggaaac
     1621 tgtaatggag cataaaactc ttggcagtct cgccctccaa agattctatc ctctgctcat
     1681 ccgaactgga acccaaagtg gtaatggaaa ggctctgggt ctggccgcgg gtaaaaaggg
     1741 ctgaaccgtg ggtgcgggga agcgggccga tctcacaggt aatcttgcgg atttccgacg
     1801 gatttcttcc gtcaacccgg ataccttttt ccagaatata atcccggaca atgccttttt
     1861 ccacttcttc cagggcctgg cgcacggatg aagcttcata tccttgcgcc gctaattttt
     1921 cctttaattc ccggtttaaa ctctctaccg cctcttccct ctgctccttg ccggataaac
     1981 ggcagatttc cttaagccgg tctttggagg aggcctcaac ctgggtagac aatttttcat
     2041 ccgtcttttt atattcaatg accgcctttt tagctccggt tactttagca aaattctcct
     2101 gcaaggcaat aataccctgc aggccctcaa atccaaaacg aattccttcc agcaccagtt
     2161 cttcagagag ttccttgacc ttgctttcaa tcataatcac cctctcccgg ttacccacca
     2221 ccaccaaatc caggcggctg gcttcggtct cggaatatgt tggattaagg acaaactggt
     2281 tatctaacca acccacccgg accgcgccta tcggcccgtt aaaaggtata tccgaaatgg
     2341 ctaacgcgca agatgccccg ttaaccgcca ggacatccgg gtcatttaac ccgtcgctgg
     2401 aaaggactat agcgatgacc tggacgtctt gagtcatacc tttgggaaag agcgggcgga
     2461 ttggccggtc aatcaggcgg gcggtcaata tctcgctttc cgaaggccgg ccttcgcgct
     2521 taaaaaatcc tccggggatc ctgccggcgg cataggtctt ttcctggtat tccacagtca
     2581 gggggaaaaa acttactccc tctctcgggt ccttggagat acaggcggta accaagacca
     2641 ctgtccctcc gtaacgcact accaccgagc cgttagcctg cttggccatc cggccggttt
     2701 ccacaattaa atcctctttg cctattttaa tgctggtctg ttttaattct tccatttttc
     2761 ctttcctctt ccataaatat taaaaccccg cgccttttta ttattcaaag aatttaaata
     2821 aaaacttgaa tgtaaaaaag gcgcggggct atcaacttat tttctcaaat tcaacttatc
     2881 taaaagttcc tgatatttct tggtgtcttc ttttttcaag taattcaaaa gcttgcgcct
     2941 ctggctaacc atctttaaca atccgcgccg ggaatgatga tccttcttgt gggccttaaa
     3001 atggtctcct agctgattta tccgttcagt caaaagggcc gcctgcaccg cgcttccgcc
     3061 ggtatcctta gtatgctcct tatgttctga aattatcttt tgtttttttg tcttttcaat
     3121 agccaatttc tccacctccc gattcttttc ccgcgctaat acaatgtaat ttataaaaat
     3181 tatactatac caaggccaaa ccgtcaagga ttttaaaaat tatttttata tggccttaat
     3241 ctttttctct tctaagagtt caataaactt agtgacataa accggattaa gctgggcccc
     3301 ggaggatttc ttcaactctc ctacggcctc ctccagcata aggggcttat tgtagcctct
     3361 gccggtagtc atcgcgtcaa aagaatcggc aatggcgatt atctgggccc cccgcggaat
     3421 catatttccg gacaggccgt gaggatagcc cctgccgtca taacgctcat gatgatacaa
     3481 cacataggga atcgccccct ccataaatgg caggccttcc aggatcttgg ccccgtccat
     3541 catatggcgc ttgatatgcg cgaaatcctc atcacttagc ttttctttct tatgcaggac
     3601 cgcgtccggc aggccgatct ttccgatatc atgcagataa gccgccttat taaccgcttc
     3661 cgattctttc ttatctaacc ccaagcccac cgccagctcg gtagagtaaa accccaccct
     3721 ttccgaatgc ccggcggtat aagggtcttt ctcctccagg gccttgacca aagaatgcat
     3781 agtctgaaaa taatactgct cgttcttgcg ctgttcttct ttcaatttct ctaatgccgc
     3841 ctccagctct ttgttgcgcg cctccagatc caggctgaca tagcctaatt c
//
LOCUS       DATDUB010000003         2925 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1172024, whole genome shotgun sequence.
ACCESSION   DATDUB010000003 DATDUB010000000
VERSION     DATDUB010000003.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2925)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2925)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2925
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1172024"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            120..1361
                     /locus_tag="VJA84_00040"
     CDS             120..1361
                     /locus_tag="VJA84_00040"
                     /inference="COORDINATES: protein motif:HMM:NF012692.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family transcriptional regulator"
                     /protein_id="HLD40548.1"
                     /translation="MNTVHLRSEEFTEREKRNLAILEILRRFGPVTRPEISRALGLNI
                     VTVSNYIEEFINKNLVFEKEFDVSEGGRRPVLLDINPDSGLVIGVGVNLLNIVATVVD
                     FKGRVSTRSSLERRHLGVKDIINCIIEVISATLKKTKNSQSRIKGIGIGIAGIVNKKD
                     GSLRWPEKVGNSWDYASIYVPLKNIIEKEFGLPVTIENDATSACFGEQWLDLEPGIKN
                     LIYMFSGVGCGIMINGEIYTGSSGSAGEVSIYNPKDETPFSCSAGNPCFLKRWDIDFG
                     LPREAREIAAGTKESKHSPGRIIELADNKPEDISLKHIFHAARENDPLASELLDGAAK
                     QFGIKVAYLVNLLNPEVVVVGGGLEQAGERFLNVVKSTVDAWAFEEMSSQVRIVYSTL
                     GENAVSLGAASLVMRQVFSRV"
     gene            1617..2810
                     /locus_tag="VJA84_00045"
     CDS             1617..2810
                     /locus_tag="VJA84_00045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40549.1"
                     /translation="MEKKIKLIAVVLGALCLGALGLAFSYINKYNKLTGEYQQLEKEK
                     QDLHVENNRITQKAAKAEEEVSRGKEREVQMRQEMDRLGSERDDLQNRYDKLSEERDK
                     LLDKLEKAMERPDAGIEAAEGETSAPGGDEYWAGILRQKEDLQIQLNNLKDSARDDQI
                     DMNELTKDKTELDLEIKKLTKEKDEIQRKLEYNEKMADTFSLQLVQERDDKRKMGKQF
                     KLVKEENYALRGRLKEVMSGKISLERRLKDTEDKRLDLYNRLSQMDMVLQDKLSAVMD
                     TKQDLSDIRKGATPSSGASITLSPIVVQNKKEEPAAENLPALTEEPVSSGINGKVREV
                     NAENGFVVLDVGQKQGVKIGDSFKVYRDSQEITRVEVIKVSLNVSAADIKDKKAQVQP
                     GDIVR"
     gene            2815..>2925
                     /locus_tag="VJA84_00050"
     CDS             2815..>2925
                     /locus_tag="VJA84_00050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004931189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HLD40550.1"
                     /translation="MENKRASIHDVAAAAGVSITTVSRVLNKVPTVSGPNR"
BASE COUNT          812 a          622 c          846 g          645 t
ORIGIN      
        1 ttatttgact tgctaacttt ttgatatata attggttaca atagataagg tagaaatata
       61 aactgttttc gcggcaaagg ccgcgttctc taaagccacg gagaaaggta agacctgaaa
      121 tgaataccgt ccacttaaga agcgaggagt ttactgaaag ggaaaagcgc aatctggcca
      181 tcctggagat actgcgccgt ttcggtccgg ttacccggcc ggagatatcc cgggccctgg
      241 gactgaacat cgtcaccgta tcaaattaca ttgaagagtt tatcaacaag aacctggttt
      301 ttgaaaagga gtttgatgtc tccgagggcg gccgcaggcc ggtgctctta gatatcaatc
      361 ctgacagcgg gctggtaatc ggggtggggg tcaacctcct gaatatcgta gccacggttg
      421 tggattttaa gggtcgggta tccacccgca gctctttgga acgcaggcat ttaggggtca
      481 aggatattat taactgcatt attgaggtaa tatcggcgac gcttaagaag accaaaaaca
      541 gccagtcccg gatcaagggc attggcatag gcatcgcggg aatagtaaat aaaaaggacg
      601 gttcgttgcg ctggccggaa aaggtgggca acagctggga ttacgcctct atctatgtgc
      661 ctttaaagaa tatcattgaa aaggaattcg gcctgccggt aactattgag aacgacgcta
      721 ccagcgcctg tttcggggaa cagtggctag acctggaacc ggggataaag aacctgattt
      781 atatgttttc cggggtaggc tgcgggataa tgattaacgg cgagatctat accggctcaa
      841 gcggctctgc cggagaggtt tccatctata atcccaagga tgagacccct tttagctgta
      901 gcgcggggaa tccctgtttc ctgaaacgtt gggatattga ttttggcctg ccgcgggagg
      961 cgcgcgagat cgccgccggg acaaaggaat caaaacattc cccaggcaga attatagagc
     1021 tggctgataa caaaccggaa gacataagcc taaagcatat ttttcacgcg gccagggaga
     1081 atgacccctt ggcctctgaa ttgctggatg gggcggcaaa acagtttggg ataaaggttg
     1141 cctatctggt aaatctcttg aaccctgaag tggtggtggt tggtggaggc ctggagcagg
     1201 ctggagagag attcctgaat gtggttaagt ccacggtaga cgcctgggcc tttgaagaga
     1261 tgtcttccca ggtgcgcata gtgtattcca ccctgggaga gaacgcggtc agtttgggcg
     1321 cggccagcct ggtaatgcgc caggtatttt cccgggttta gaacagtttt ttgtttttct
     1381 gaaaagaggt tgggattatt gctccacctc gcctgccggc aggcataaag tagttgctca
     1441 ttgtttttcc ctcgcgtaag cgctcgtaaa tttctgcgaa atttacttcg cacgcttcgg
     1501 gattaattcg cgcagtgact tatgttcact cgcttcgctc gttccattgg ccaccaggcc
     1561 atggtgcggc ttcctatagc cgcagccata agtcacgcgc tcattaagga ggtgaaatgg
     1621 aaaagaagat aaaacttatc gccgtggtct tgggggcttt gtgcctgggg gcattaggct
     1681 tggctttttc ttatattaat aagtataata aattaaccgg cgaataccag cagttagaaa
     1741 aggagaagca ggatctccat gtggaaaata accgtataac ccaaaaggcg gccaaggctg
     1801 aagaggaagt cagccgcggg aaagagcgag aggtccaaat gcggcaggag atggaccggc
     1861 tgggatcgga aagagatgac ctgcagaaca ggtatgacaa gctctccgag gagagggaca
     1921 agctgttgga taagctggag aaggctatgg agaggccgga tgccgggata gaggccgcgg
     1981 aaggagaaac atccgcgcct ggcggggatg aatactgggc cgggatatta aggcaaaaag
     2041 aggacctcca aatacaattg aataacctca aggactccgc ccgcgatgat cagatagaca
     2101 tgaatgagct gactaaggat aagactgaac tggatctgga gatcaaaaag ctgactaagg
     2161 agaaggatga gatccagcgc aagttggaat acaacgaaaa gatggcggat acattctccc
     2221 tgcaattagt ccaggagcgc gatgataagc gcaagatggg aaaacagttt aagttagtca
     2281 aagaagagaa ttacgccttg cgcggacggc tcaaggaagt aatgagcgga aaaatttcct
     2341 tagaaaggcg gcttaaagat accgaggata aacggctgga cctctataac cgacttagcc
     2401 agatggatat ggtcctgcag gacaagcttt ccgcggtgat ggatactaag caggacctaa
     2461 gcgatatccg taagggggcc actccgtctt ccggagcgag cattacgctt tcgccgattg
     2521 tagtgcaaaa taaaaaagag gagcccgcgg cagagaatct ccccgcgtta actgaagagc
     2581 ctgtttcatc gggaataaac ggcaaggtca gagaggtaaa cgcggaaaat ggctttgtgg
     2641 tcctggatgt gggccagaaa caaggggtca agatcggaga ttcttttaag gtttatcggg
     2701 attcccagga gataacgcgg gtagaggtaa tcaaggtcag ccttaatgtc agcgccgcgg
     2761 atatcaagga taaaaaggcg caggtccaac ccggcgatat agtgagatag agaaatggaa
     2821 aataagaggg ccagcatcca cgatgtggct gccgccgccg gggtttccat aaccacagtt
     2881 tcccgggtgc tgaataaagt ccccaccgta agcggcccta accgc
//
LOCUS       DATDUB010000004         4077 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1506846, whole genome shotgun sequence.
ACCESSION   DATDUB010000004 DATDUB010000000
VERSION     DATDUB010000004.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 4077)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4077)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4077
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1506846"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..457)
                     /locus_tag="VJA84_00055"
     CDS             complement(<1..457)
                     /locus_tag="VJA84_00055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40551.1"
                     /translation="MRRDIVGKLNKYFTSLKEDEMGRISRILKDEIQRLNIKYLSDSG
                     KARDIQLVLRPWFIQPKEMRFLHRLIYSFKAAHHKLCRMYLRNRDIQEIMPLMPDEKK
                     WFGLINKDKFQKYQAVFGRWDTNVSFDERDNIRGIKFLETNTVGIGGIHY"
     gene            538..1983
                     /locus_tag="VJA84_00060"
     CDS             538..1983
                     /locus_tag="VJA84_00060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012547018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TldD/PmbA family protein"
                     /protein_id="HLD40552.1"
                     /translation="MHKDLLRSMIHKLKSKGPVYADIRWVKKQHENISAFNYNVENLS
                     SHIDEGYGLRVLYNGAWGFACGSIFEEKAAEKSIRLAIEIAKASSLANQEKITFPQQP
                     PVHASYTSSYQINPFEVSQETKLHYLFYTNEILLKSAKIKFAQSTLDFYRTDKFFINS
                     EGSEIEQSFIESGGFLEASASVGRKVQKRSYPASHHSQLRQAGYEYIKELDFPGNAPR
                     AREEAIILLDAPDCPAGETTIILDSFQTALQVHESCGHPVELDRVLGSELSYAGGSFL
                     TLEKYGKFRYGSKSVNIIADAGLTAGAGSFAYDDEGVKAQRIELVKNGIFADYLTSRE
                     TAGIIKKESNGTMRAESWNNIPLIRMTNVNLAPGKESLEELIAGAKNGLYLCTNKSWS
                     IDDLRLNFQFGAEIAWQIKNGRLGRAYKNPVYYSNTPYFWNNCSGVANQDSQYLWGIP
                     NCGKGEPSQSMHVGHATSPARFEKISVGVKK"
     gene            1980..3320
                     /locus_tag="VJA84_00065"
     CDS             1980..3320
                     /locus_tag="VJA84_00065"
                     /inference="COORDINATES: protein motif:HMM:NF039907.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallopeptidase TldD-related protein"
                     /protein_id="HLD40553.1"
                     /translation="MIHPDQIQEKLSPFTRTKEADKTGITFLRTSLQVSRFANSLIHQ
                     HMNDETQIIYFRALCNGRLGIASTNSLAEHNLKETFKKALHIAKLKIDCRLKRDIPSF
                     RPLKTIANKVSPKTIYAPASSRAKILRDIFLEARDLKIGFAGNFYNGLTQLAVLYPGG
                     LMNYQDHSFCGVKFIASHNGSSGYAANVDYDIDRLNPAQTADKAIEKCLLGLKKTALK
                     PGRYDVILEPPATAELILWLNYIGFGAKSFLEETSFLCGKLGERLTGKKVEIYDYGRD
                     KNSFILPFDFEGSRRQKISLIKNGIAQKPLTDSYYAKLLKIRNTGHANFPDDTEGPLG
                     YNLIMRNGRTAKDEMFKSTKQAVLITRFHYVNGFLDPRKAQMTGMTRDGTFLVENGKI
                     KCGIKDMRFNESILEAFSRINHISREREIIADPLESLGSVYAPSLYIKGFNFIS"
     gene            complement(3400..3783)
                     /locus_tag="VJA84_00070"
     CDS             complement(3400..3783)
                     /locus_tag="VJA84_00070"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HLD40554.1"
                     /translation="MAVVYPKKILIVDDEPDVLTSLGNILRRANFIVFSAATGEEALE
                     IALNKLPDLIFLDIVLPGMEGSEVAAALLENPKTAQIPVVFLTGIINKEEEALPGVKS
                     GRHYVMAKPAAKEEILAMIQSILAA"
     gene            complement(3821..>4077)
                     /locus_tag="VJA84_00075"
     CDS             complement(3821..>4077)
                     /locus_tag="VJA84_00075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40555.1"
                     /translation="NIIRSAQLAYKIDNGSYYGFDSLDESDEANEARSVLNIDIYNND
                     DWEYSVGVSGSDSSTATATAKRLRSGYSIVNVLMDMTTRE"
BASE COUNT         1130 a         1058 c          915 g          974 t
ORIGIN      
        1 tgtaatggat ccccccgata cccacggtat tagtctccag gaattttatc ccccggatat
       61 tatccctttc gtcaaaagag acattggtat cccagcggcc aaagactgcc tgatatttct
      121 ggaatttatc tttatttata aggccaaacc atttcttctc atccggcatt aagggcataa
      181 tttcctgtat gtcccggtta cgcagataca tccggcaaag cttgtggtgg gcggccttaa
      241 agctatatat cagccgatga agaaatctca tctctttcgg ctggataaac catggcctaa
      301 gcaccagctg gatatcccgc gcctttccgg aatcgctcaa atactttatg ttcaaacgct
      361 ggatttcgtc cttcaatatc cgggaaatcc ggcccatctc atcctctttt aaagaggtga
      421 aatatttatt aagtttcccg actatatctc ttctcatctt aagagctatt ataatataga
      481 aaacgaaaat agcaaaaggt attgcggggc taaatcaaga gtgctatagt aacttctatg
      541 cacaaggacc tcctgcgctc aatgattcat aagctgaaat ccaaaggccc ggtttacgcg
      601 gatatccgct gggtaaaaaa acagcatgaa aacatctcgg cctttaatta caatgtggaa
      661 aacctctcct ctcatataga cgaaggctat gggctgcggg tcctctataa tggggcttgg
      721 ggctttgcct gcggcagtat ctttgaggaa aaggccgcag agaagagcat caggctggca
      781 attgagattg ccaaggcctc cagcttggca aaccaggaaa aaataacctt cccccaacaa
      841 ccgccagtcc atgccagcta tacctcaagc taccagataa acccctttga ggtctcccag
      901 gagactaaac tgcactatct tttttatacc aacgagattc tccttaagtc cgcgaagata
      961 aaattcgccc aatccaccct ggatttctac cgcacggata aattctttat caatagcgaa
     1021 ggttcagaaa tagaacaatc ctttattgaa agcggggggt tcctggaagc ctcggcaagc
     1081 gtcggcagga aagtccagaa acgctcatac ccggcgtccc atcattccca actgcgccag
     1141 gccggatacg aatatattaa ggagctggat ttcccgggca acgcccccag ggcgcgggaa
     1201 gaggcgatta ttctccttga tgccccggac tgcccggccg gggaaaccac tatcatctta
     1261 gacagcttcc agaccgccct gcaggtgcat gagtcctgcg gccaccctgt ggaattagac
     1321 cgggttctgg gttcagagct aagctatgcc ggagggagtt tcctgacctt agaaaaatac
     1381 ggaaaattcc gttacggctc aaagtcagtg aatattattg ctgatgccgg tcttaccgca
     1441 ggggcaggaa gctttgccta cgatgacgaa ggggttaagg cccaacggat agaattggta
     1501 aaaaacggga tttttgccga ttacctgact tcccgggaga cagccggcat catcaaaaaa
     1561 gaaagtaacg gcacaatgcg ggcggagtcc tggaacaaca tcccccttat ccggatgact
     1621 aatgtcaacc tggctcccgg caaagaaagc cttgaagagc tgattgccgg cgctaaaaac
     1681 ggcctctatc tgtgcaccaa taaaagctgg agtattgacg acttaaggct gaactttcaa
     1741 tttggcgcgg aaatcgcctg gcagataaaa aacggccggc tgggccgcgc ctataagaac
     1801 ccggtttatt attccaacac cccttacttc tggaacaact gttccggggt ggctaatcag
     1861 gattcccaat atctatgggg catacctaac tgcggaaaag gcgagccctc ccagtcaatg
     1921 catgtcggcc atgcaacaag cccggccagg tttgaaaaaa tcagtgtggg ggtaaaaaaa
     1981 tgatccatcc tgaccaaatc caggagaaac tttctccatt caccaggacc aaagaggcgg
     2041 ataaaaccgg gataaccttc ctgcgcacca gcctccaggt aagccggttt gccaattcct
     2101 tgatccacca gcatatgaat gacgaaaccc aaatcatcta tttccgggcg ctttgtaacg
     2161 gccggctggg gatagcctcc accaattccc tggctgaaca caatctcaag gaaaccttta
     2221 aaaaggccct gcatatcgct aaattaaaaa tagattgccg cctgaaaaga gacatccctt
     2281 cttttcgccc gctaaagact atcgcgaaca aagtttcccc aaaaacaatc tacgccccgg
     2341 cctcgagccg ggcgaagata ctccgggata tatttcttga ggccagagac cttaaaatag
     2401 ggtttgccgg caatttttac aacggtctta cccagctggc cgtcctctat cccggcggct
     2461 tgatgaatta ccaggaccat tccttttgcg gagtcaaatt cattgccagc cataacggct
     2521 ccagcggtta tgccgccaat gtggattacg acattgacag gctgaatccg gcccagaccg
     2581 cggataaagc gatagagaaa tgccttctcg ggcttaagaa aaccgcgctt aagccgggca
     2641 gatacgatgt catcttagaa cctccggcaa cggcggagct tatcctctgg cttaattata
     2701 ttggattcgg ggccaaatcc ttcctggagg aaaccagctt cttatgcggg aaattaggag
     2761 agcgcctgac cggcaagaaa gttgaaatct acgactacgg ccgggacaaa aactccttta
     2821 tcctgccctt tgactttgaa ggctcaaggc gccaaaaaat atccctgata aaaaatggca
     2881 ttgcccaaaa gccattgacc gatagctatt acgctaagct cctgaaaata agaaacaccg
     2941 gccatgccaa tttcccggat gataccgagg ggcctttggg atacaacctg ataatgcgaa
     3001 acggccggac ggctaaggat gaaatgttta agtccacaaa acaagcggtg ctgattaccc
     3061 gttttcatta tgtcaacgga ttcttagacc cccgtaaggc ccaaatgacc gggatgaccc
     3121 gcgacgggac ttttctggtg gaaaacggga aaataaaatg cggaataaag gatatgcgtt
     3181 ttaacgaatc catcctggag gccttttccc gaattaatca tatctccagg gaaagggaaa
     3241 tcattgccga ccccttagaa agtttaggct cggtctatgc ccccagcctt tacatcaaag
     3301 gctttaattt tatttcttaa tattgacccc ctcccttgat gggatgggat aggggagggt
     3361 ggaaattgga ggaaggtcaa aatttaatat cacggaacat taggcggcaa ggatactctg
     3421 aatcattgcc aaaatctctt ctttagccgc cggcttggcc ataacatagt gcctgccgct
     3481 tttcacgcca ggcaaggctt cctcttcctt attgatgatc ccggtgagga agactaccgg
     3541 gatctgcgcg gttttagggt tctccagcaa agccgcggcc acctcactgc cttccatccc
     3601 gggcaggacg atgtccaaaa atatcagatc cggcagtttg tttagcgcga tctccagggc
     3661 ctcttcgccg gttgcggcgc taaagacgat aaaattcgcc cggcgcagga tgttccctaa
     3721 cgatgtcaag acatccggct catcatcaac tatcagtatt tttttaggat atacaactgc
     3781 cataaaatct atccttcccc tctcccacaa tttaccagat ctattctcta gtagtcatat
     3841 ccataagaac attaactatg ctatagccgc tgcgaagccg cttggcagta gccgtggccg
     3901 tggaactatc actgccgctg acacctacgc tatactccca atcatcattg ttataaatat
     3961 caatatttaa cacgcttctt gcctcattag cctcatcgct ttcatcaagg gaatcaaaac
     4021 cataataact gccgttatca attttataag ccagctgggc actgcggata atgttca
//
LOCUS       DATDUB010000005         2564 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_2176665, whole genome shotgun sequence.
ACCESSION   DATDUB010000005 DATDUB010000000
VERSION     DATDUB010000005.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2564)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2564)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2564
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2176665"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1717)
                     /locus_tag="VJA84_00080"
     CDS             complement(<1..1717)
                     /locus_tag="VJA84_00080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018196584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin oxidoreductase"
                     /protein_id="HLD40556.1"
                     /translation="MKERFSRKEFIGLAGVAGLSSGALLGEGFGKKILPALADTDKKA
                     DYGLNKPKNIINSVCLQCNTGCSIKVKILDGLAVKIDGNPYSPWTMWPHIPYKTPLSV
                     AAAIDGHICPKGQSGIQTLYDPYRIRKVLKRAGSRGENKWVSIPFEQAVKEIVEGGRL
                     FSEVAGEESRMVEGLKDIWAIREPKVFKEMSADIKEIWHAKEKEEKKKKIEAFKEKYK
                     EHLDKMIDPEHPDLGPKNNQLLWVHGRLKGGRSEFFKRFIQDSFGSANFHGHTTVCQG
                     SLYFTGKAMSDQFDFDEKDKKAKWGGGKKFYWQGDLSGAKFVIFVGSSPFEANYGPPY
                     SSNKITEGLVSGRLKYAVVDPRLSKTASKAWKWLPIKPGSEGALALAMIRWIIENKRY
                     DAKYLANANKAAASLDSEPTWANGCWLVKLKDGLPSEFLRASDLGLEKSLKTKTLKDG
                     TSLEYEWDNFVCYSSGQAAGFDPNDKDTPVEGELFVDSEVNGIKVKSALEIVKAEADR
                     YSMEEWAALCGLEAKDIIALAKEFTSYGKRACADIHRGVSQHTNGFYNVLDWYTLNLL
                     IGNYDW"
     gene            complement(1728..>2564)
                     /gene="nrfD"
                     /locus_tag="VJA84_00085"
     CDS             complement(1728..>2564)
                     /gene="nrfD"
                     /locus_tag="VJA84_00085"
                     /inference="COORDINATES: protein motif:HMM:NF015851.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NrfD/PsrC family molybdoenzyme membrane anchor
                     subunit"
                     /protein_id="HLD40557.1"
                     /translation="VVLDLGHWERFWYVFRYPTLSSMMSWMVWIYSLYFLIVIIQLYY
                     VLSGSLKTSRLIFLISFPLAVAIPVCGGSLFGVIGARPYWHSAIFPVIFLFEALLSGI
                     SLITILAAAFGLMKEEKEAFIMLSRIVLGLLLVNISLEIAVMAVPLWGQIAYHIDAVK
                     LVLFGPFWWVFWLAHIGLGCVAPLFLLSSKDNPNRISLACGLIVATFMSVRLNIVIPA
                     LAIPELKGLESAFIEKRLAFSYIPSLHEWQVSVFIACLTAGLFYLGMRFFRFLKLNAR
                     KE"
BASE COUNT          669 a          750 c          561 g          584 t
ORIGIN      
        1 gccagtcata attcccgatc aacagattca gggtatacca gtccaggaca ttgtagaaac
       61 cgttggtatg ctgggagaca ccccgatgga tatcggcgca ggcgcgcttg ccataggagg
      121 taaactcctt agccagggcg ataatgtcct tggcctccag gccgcagagc gcggcccatt
      181 cctccatact atatctatca gcttcagcct taacaatctc cagggcgctc ttgaccttaa
      241 tcccgttaac ttcgctatcc acgaacagct ccccttcaac cggggtatcc ttgtcattgg
      301 gatcaaaacc agccgcctgg cccgaggaat aacagacaaa attatcccac tcatattcca
      361 gacttgttcc gtcttttaag gtcttggtct tgagtgattt ttccagcccc agatccgatg
      421 cccgcaggaa ttcagacggc aagccgtctt ttagcttgac taaccaacag ccattggccc
      481 aggtcggctc gctatcaagc gaggccgcgg ccttattggc gttagccagg tatttggcgt
      541 catagcgctt gttctcaatt atccagcgga tcatggctaa agccaatgcc ccttcggagc
      601 cgggttttat aggcagccac ttccaggcct tggaggcggt cttggaaagg cgggggtcaa
      661 ccaccgcgta tttcagcctg ccggagacca aaccttcggt gatcttatta ctgctgtagg
      721 gcgggccgta attggcctca aaaggcgaag aacccacaaa gatcacaaac ttcgcccctg
      781 ataaatcccc ctgccagtaa aacttcttcc ccccgcccca tttggccttt ttgtccttct
      841 cgtcaaaatc aaactgatcg ctcatcgcct tgccggtgaa ataaagcgag ccctgacaga
      901 ccgtagtatg gccgtgaaaa ttagcagagc caaaactatc ctggataaag cgtttaaaga
      961 attccgaacg cccgccttta agcctgccgt gcacccataa aagctgatta ttcttcggcc
     1021 ctaagtccgg atgctccggg tcaatcatct tatccaaatg ctctttatac ttttccttga
     1081 aggcctctat ctttttcttc ttttcctctt tctctttggc gtgccagatt tccttgatat
     1141 ccgcggacat ttccttgaat accttaggct ccctgattgc ccagatatcc ttaagcccct
     1201 caaccatccg gctttcttct cccgccactt cactaaagag cctccccccc tccacaatct
     1261 ccttaaccgc ctgttcaaag ggaatgctca cccacttatt ctcaccccgc gagcctgcgc
     1321 gttttaaaac cttgcggatg cggtaagggt catacaaggt ctggatcccc gactgtccct
     1381 tagggcagat atgcccgtca attgccgcgg ccacggagag cggggtctta taaggaatat
     1441 gcggccacat tgtccagggg ctatagggat tgccgtcaat ctttaccgcc aggccgtcta
     1501 agattttcac cttgatggaa cagccggtat tgcactgcag gcaaacgcta ttgatgatat
     1561 tcttgggctt atttaagcca tagtccgcct tcttatccgt atccgctaat gccgggagaa
     1621 ttttcttccc gaaaccctca cccagcaaag ccccggagct aagtccggca acgccggcca
     1681 atcctatgaa ttcttttcgg gaaaaccgct ctttcattct aatcctctta ttctttgcgc
     1741 gcgtttaact taagaaaacg gaaaaaccgc ataccaagat aaaatagacc cgcggtcaga
     1801 caggcgataa acacgcttac ctgccattcg tgcaggctgg ggatataaga aaaggccagc
     1861 cgcttctcaa taaaggcgct ttccaggccc tttaattccg ggatagccag ggccgggata
     1921 acgatgttca ggcgcacgct cataaaggta gccacgatca agccgcaggc taaggaaatc
     1981 ctattcgggt tatccttaga agacaataaa aacagcggcg ccacgcaccc cagaccgata
     2041 tgcgccagcc agaacaccca ccagaacggc ccaaaaagca ctaatttcac cgcgtcaata
     2101 tgataggcaa tctggcccca caacggcacc gccataaccg ctatttcaag cgagatattg
     2161 accagcagga ggcctaagac tatccgggac aacataataa aggcctcttt ttcttctttc
     2221 atcaagccaa aggccgcggc caggatggta atcagggaaa tcccgctcaa caaggcctca
     2281 aacaggaaaa tcaccgggaa gatcgccgaa tgccaataag gcctggcccc gatgaccccg
     2341 aacagcgaac ctccgcagac cgggatggcc acagccaagg gaaagctaat cagaaatatt
     2401 aaacgagagg tcttcaaaga accgcttaac acataataca gctgaataat aacaatcaag
     2461 aaataaaggc tgtaaatcca aaccatccag ctcatcattg aggagagcgt aggatagcga
     2521 aagacatacc agaacctctc ccaatggccc aggtccagca cgac
//
LOCUS       DATDUB010000006         3295 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1341260, whole genome shotgun sequence.
ACCESSION   DATDUB010000006 DATDUB010000000
VERSION     DATDUB010000006.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3295)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3295)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3295
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1341260"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..851)
                     /locus_tag="VJA84_00090"
     CDS             complement(<1..851)
                     /locus_tag="VJA84_00090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020257924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF58 domain-containing protein"
                     /protein_id="HLD40558.1"
                     /translation="MIPKEILKNIRRIQITTSRMVSDVFAGQYQSVFKGRGMEFDEVR
                     EYQPGDEIRSIDWNVTARMNHPYIKKFVEERELSVMLLLDVSASCAFATLRQLKSRLA
                     AEICSLLAFSAIRNNDKVGLIIFSDKVEKFVPARKGLRHILRIIREALYFKPQGKATD
                     INAALEYLNRVTRRKAVCFMISDFYSPDFKKMLSLTNKRHDLVAISLTDPLELNLPNA
                     GIVRFQDSESGEDFLLDTADEALRREYTLAGQKMMKDRALLFGSCKVDMVDIRTDVPY
                     QQSLFKF"
     gene            complement(910..1902)
                     /locus_tag="VJA84_00095"
     CDS             complement(910..1902)
                     /locus_tag="VJA84_00095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020257391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HLD40559.1"
                     /translation="MGTGLGIINEKVSKESVLVHGLVQEIRKVIIGQDYLVNRLLVGI
                     LANGHILVEGVPGLAKTLSIKTLAGAVQAKFQRIQFTPDLLPADLIGTLIYNPREGTF
                     SVKKGPVFANIILADEINRAPAKVQSALLEAMQERQVTIGENTYKLDEPFLVMATQNP
                     IEQEGTYPLPEAQVDRFMLKINITYPTIEEEQRILKVMGVTDKKFEVNPVIQSQDILR
                     LRETVNEIYLDEKLEKYILDIVFATREPKKYKLDELNGLIQYGASPRATIYLALAAKA
                     YAFTQGRGYVSPQDIKTIGPDVLRHRVIVSYEAEAEEKTSEDIIKKIFNEIEVP"
     gene            complement(1942..>3295)
                     /gene="glgP"
                     /locus_tag="VJA84_00100"
     CDS             complement(1942..>3295)
                     /gene="glgP"
                     /locus_tag="VJA84_00100"
                     /inference="COORDINATES: protein motif:HMM:TIGR02094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="alpha-glucan family phosphorylase"
                     /protein_id="HLD40560.1"
                     /translation="TDQLYRSDDVNLKAMQRIVLGMGGALALKELGYNIDLFHLNEGH
                     AVFAFVEKARGLDRGELSELKKHFVYTCHTPVEAGHDRFHINDIAKILRKEDLELVQE
                     YGREGQEGINLTLLAMNVSSAVNAVSMRHGEVMHLQFPKYKEKIDYVTNGVHPHTWIS
                     DRFKAVFDRFDSVFKDWKANPFVLKKAADLRLDQDFREEIWYAHQANKRDLCLFLDRW
                     GMNKDIFTVCWARRVAAYKRPSLILQDIQRLIDIAKNIGPIQVIFAGKAHPQDNLGFT
                     HINEMLDKVDGLSRDYDYLKIIMLENYEMGLAKALTSSVDVWLNNPLPPFEASGTSGM
                     KAIINGVLQMSTLDGWVVEAEDKNIGKIFGYQAVPGKSGSEYDLRLEDDSRRLYSALE
                     DMVKLYYQTNNKGSPDLSSKWIDMMIDCIGAGAYFNTYRMLDEYKSKIWRLENVGVSP
                     "
BASE COUNT          764 a          923 c          745 g          863 t
ORIGIN      
        1 aagaacttaa acaggctttg ctgataaggc acatccgtcc ttatgtcaac catatccact
       61 ttacaagagc caaacaaaag cgccctatcc ttcatcattt tttgcccagc cagggtatat
      121 tcccggcgca gggcctcatc cgcggtatcc agaagaaaat cctccccgct ctcggagtcc
      181 tgaaaacgga ctatcccggc attaggaaga ttaagctcca gggggtcagt caggctgatc
      241 gccaccaggt catggcgctt attagtgaga gagagcatct tcttaaaatc cggcgagtaa
      301 aagtccgaga tcataaaaca gactgccttg cggcgggtta cccggtttaa atactccagg
      361 gccgcgttga tatccgtggc cttgccttgc ggcttaaaat aaagcgcctc gcggataatc
      421 ctcaagatgt ggcgcaggcc tttgcgcgcc gggacaaact tctccacctt gtcgctgaaa
      481 atgatcaacc ctaccttgtc attattgcga atagccgaga aagccaggag cgagcagatc
      541 tccgcggcta agcgcgactt taactgtctt aatgtcgcga atgcgcagga agccgagaca
      601 tccagaagca gcattaccga gagctctctc tcctccacaa acttcttgat atagggatgg
      661 ttcatccggg cggtgacatt ccagtcaata gagcggattt catcccccgg ctggtattcc
      721 cgcacctcgt caaactccat cccccggccc ttgaatacgc tctgatactg gccggcaaag
      781 acatcgctga ccatccggga ggtggtaatc tggatgcgcc ggatattttt tagaatctcc
      841 ttgggaatca ctttttactt tttaattttg agttgtggtt ttgacttttg actttttact
      901 tttgactttt taggggactt ctatttcgtt aaatatcttc ttgattatat cctcggaggt
      961 cttttcctcg gcctcggcct cgtagctgac aatcacccgg tggcgcagga catccgggcc
     1021 gatagtcttg atatcctgcg gactgacata accccggccc tgggtaaagg cgtaggcctt
     1081 ggccgccagg gccagataaa tagtcgccct cggcgaggcc ccgtattgaa taagcccgtt
     1141 aagctcatcc agcttatatt tcttaggctc gcgggtggca aagacgatat ccaggatata
     1201 tttctctaat ttttcatcca aataaatctc atttaccgtt tctcttagcc gcaggatatc
     1261 ctgggactgg ataaccggat tgacctcaaa ctttttgtcc gtaaccccca tcaccttaag
     1321 tatccgctgt tcttcttcta tggtgggata ggttatgttt atcttgagca taaagcggtc
     1381 cacctgggcc tccggtagag ggtaggtgcc ctcctgctct atcgggttct gggtggccat
     1441 taccagaaat ggctcatcta atttataggt attctccccg atagtaacct gtctctcctg
     1501 cattgcctct aagagggcgc tctgcacctt ggccggggcg cggttaatct catcagccaa
     1561 gataatattg gcaaacaccg gccctttctt aaccgagaat gtcccttccc tgggattata
     1621 aatcaatgtc ccgatcaaat ccgcgggcag aaggtcaggg gtaaattgta tcctctggaa
     1681 cttggcctgg accgccccgg ctaaggtctt gatggacaag gtcttggcca gccccggaac
     1741 gccttcaact aagatatgcc cgttagccag tatgcccacc agcagccggt tgactaagta
     1801 atcctggccg ataatcacct tgcggatttc ctggaccaac ccgtgaacca gcacgctctc
     1861 tttgcttacc ttttcattaa taatccccaa tcccgtgccc atatttttcc tcccactctt
     1921 atcgttaatt catttcacat ttcaagggct gacccctaca ttttccagtc gccagatctt
     1981 gctcttatac tcatccagca tccggtaggt gttaaaatac gcccctgccc cgatacagtc
     2041 tatcatcata tctatccatt tagaggacaa atccggactg cccttattat tggtctggta
     2101 gtagagctta accatatcct caagcgcact gtagagccgg cgggaatcat cctccaggcg
     2161 caagtcatat tcactgccgc ttttgccggg aacggcctga tagccaaaaa tctttccgat
     2221 attcttatcc tcggcctcca ccacccagcc gtctaaggtg ctcatctgga ggaccccgtt
     2281 aatgatggcc ttcatcccgc tggtccccga ggcctcaaaa ggcggcaaag ggttattcag
     2341 ccagacatcc acgctggagg taagggcctt ggccaggccc atctcataat tctccagcat
     2401 tataattttc agataatcgt agtcccggct aagaccgtca accttgtcca gcatctcgtt
     2461 gatatgggta aagcccagat tgtcctgggg atgggccttg ccggcaaata ttacctgtat
     2521 cgggccgata ttcttggcga tatcaatcag ccgctggatg tcctggagta tcaggctggg
     2581 ccgcttatag gccgccaccc tcctggccca gcagacggta aaaatatcct tgttcattcc
     2641 ccatcggtct aagaaaaggc acaaatccct tttattggcc tgatgggcat accatatttc
     2701 ttcgcggaag tcctgatcaa gcctcaagtc agcggccttt ttaaggacaa aggggttggc
     2761 cttccaatct ttaaatacgg aatcaaagcg gtcaaacacg gccttaaagc ggtcggaaat
     2821 ccaggtgtgc ggatgcaccc cgttagtcac ataatctatc ttttctttgt atttgggaaa
     2881 ctgcaggtgc atcacctcgc cgtgcctcat agacaccgcg tttaccgccg aggaaacatt
     2941 cattgctaaa agggtgagat tgatcccctc ctggccttcc cggccgtatt cctggaccag
     3001 ctcaaggtct tccttcctca agattttagc gatatcgttg atgtggaaac ggtcgtgccc
     3061 ggcctcaacc ggggtatggc aggtatagac aaaatgcttc ttcaactcgc ttaattcccc
     3121 ccggtcaaga cccctggcct tttccacaaa ggcgaatacc gcgtggccct cattgagatg
     3181 aaaaaggtct atattataac ccaattcctt caaggccagg gccccgccca tccccaggac
     3241 aatcctctgc attgccttaa ggttcacatc atcactgcgg taaagctggt cggtc
//
LOCUS       DATDUB010000007         2320 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_339120, whole genome shotgun sequence.
ACCESSION   DATDUB010000007 DATDUB010000000
VERSION     DATDUB010000007.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2320)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2320)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2320
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_339120"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..249)
                     /locus_tag="VJA84_00105"
     CDS             complement(<1..249)
                     /locus_tag="VJA84_00105"
                     /EC_number="2.3.1.286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013261376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070403 - NAD+ binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Sir2 family NAD-dependent protein deacetylase"
                     /protein_id="HLD40561.1"
                     /translation="MIPRLEADKIHRVSSLLKSCKSILFITGAGISADSGLPTYRGIG
                     GLYNDKSTENGIPIETALAGETLQKHPEITWKYLSQIEK"
     gene            complement(246..638)
                     /locus_tag="VJA84_00110"
     CDS             complement(246..638)
                     /locus_tag="VJA84_00110"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HLD40562.1"
                     /translation="MEKKRILVIDDDEHIANLIKLRLESAGEYEVKTLFEATDIIGQV
                     RAFKPDVILLDLLMPDIGGLEACRRLNDDAVTYAIPIIVISALSKDIDKLKAYKLGII
                     DYIVKPFDPKILIATIEKAIRAKRGAEG"
     gene            complement(665..1123)
                     /locus_tag="VJA84_00115"
     CDS             complement(665..1123)
                     /locus_tag="VJA84_00115"
                     /inference="COORDINATES: protein motif:HMM:NF014678.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF192 domain-containing protein"
                     /protein_id="HLD40563.1"
                     /translation="MKRTAIIFFIFLSSSCFGQEVREVCFKETCVQAEIADTPAQRQK
                     GLMSREALLEAQGMLFIFEEEARHGFKMENVNFPLDIIWLDKDGKVVDVKPGLQPCQE
                     VCEPFAGGHREKSCASFLPADKALYVLEVNSGFAGKHKIKIGDTMSINGY"
     gene            1242..1781
                     /locus_tag="VJA84_00120"
     CDS             1242..1781
                     /locus_tag="VJA84_00120"
                     /inference="COORDINATES: protein motif:HMM:NF019265.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HLD40564.1"
                     /translation="MDEDLELINKFKAGEMEGFEMLVKKYHNRVINIANSLSRHNSDA
                     EDIAQEAFLKVYHNLKDFRNQAKFSSWLYRVTLNTAYDHLRKNRRKNYSLDEIDYSRI
                     ADNKPSEDILAKETLQKALDEIPFDFRAALILKEIEGLSYKEIAQTLNIRIGTVESRI
                     FRARTMLKNLLTEKGGKIK"
     gene            1778..2215
                     /locus_tag="VJA84_00125"
     CDS             1778..2215
                     /locus_tag="VJA84_00125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40565.1"
                     /translation="MNCRHLRLISRYADNELNPGKKAFMDTHILTCFLCLHELKGILS
                     IKEGIQKNKIGSPPEFFWQTLKEKIRKEENTCAKTEEFTFDFARWSRRLIPVPVLASL
                     LIVILLNLNQTNLVDEYLFANQDNSVLELIENPGNQSISGWLY"
BASE COUNT          675 a          571 c          480 g          594 t
ORIGIN      
        1 cttctctatt tgggaaagat atttccaggt gatctctgga tgtttttgca atgtttcccc
       61 ggctaaggca gtttctatgg ggatgccgtt ttcggtggac ttatcattat acagcccgcc
      121 tatgccccgg taagtcggca atccagaatc cgcggaaatg ccggcgccgg taatgaataa
      181 aatactttta caacttttca acaaactgct aaccctgtgg attttatccg cttccagcct
      241 gggaatcaac cttctgctcc ccgcttagct cttattgcct tttctatcgt cgcgatcaaa
      301 atcttggggt caaaaggctt gactatataa tcaataatcc ccagcttgta ggccttgagc
      361 ttatctatat ccttgcttaa agccgatatg acaataatag ggatagcata ggttaccgcg
      421 tcatcgttta gcctcctgca ggcctctaac cccccgatat ccggcatcag caaatcaagc
      481 agtatcacat caggcttaaa agcgcggacc tggccgataa tatcggtggc ctcaaacaat
      541 gtcttcacct catattctcc cgcgctttca agacgcagct taatcaaatt ggcgatatgc
      601 tcatcgtcat caattaccaa tattctcttc ttttccataa cctaaccctc ctcggctgga
      661 ggcatcaata gccattaatg ctcattgtat ccccaatctt gattttatgc ttaccggcaa
      721 agccggaatt aacctccaga acatataaag ccttatccgc cgggagaaag ctggcgcaac
      781 ttttctctct atgtccgcca gcaaaaggct cgcaaacctc ctggcagggt tggaggccgg
      841 gctttacatc cactacctta ccgtctttat ccagccagat tatgtctaaa ggaaagttga
      901 cattctccat cttgaagcca tgcctggcct cctcttcaaa gataaaaagc atgccctggg
      961 cctcaagcaa agcctcccgg gacattaacc ctttctgcct ttgcgcgggc gtatccgcaa
     1021 tctccgcttg cacgcaagtc tccttaaaac aaacctccct cacttcctgc ccaaagcaag
     1081 atgaggagag aaaaataaag aaaattatgg ccgtccgttt cattctatta tgtttagaac
     1141 caataagtta tgctataatc tctatacgcc gcatattata cctcaaaaaa tccgggaata
     1201 aaatcagaag ttttcgcgtc taatatggtg aaagggcagg aatggatgaa gatttagagc
     1261 tgataaataa atttaaggcc ggagaaatgg agggctttga gatgttagtc aagaaatacc
     1321 acaaccgggt tatcaatatc gccaattccc tctcccggca taacagcgac gccgaagaca
     1381 tcgcccagga ggcctttctg aaggtttatc ataatctgaa ggatttcagg aatcaggcca
     1441 agttctccag ctggctttac cgggttaccc taaacaccgc ctacgaccac ctgcgcaaga
     1501 atagacgcaa aaactattct cttgatgaga ttgattattc ccgcatcgcc gataacaagc
     1561 caagcgaaga tatcctggcc aaggaaaccc tgcaaaaggc cttagacgaa ataccttttg
     1621 attttagggc cgccctgatt ttaaaggaaa ttgaagggtt atcctacaaa gaaatcgctc
     1681 aaaccttaaa tatacgcatc gggaccgtag aatcccggat attccgcgcc cggacgatgc
     1741 ttaagaatct gcttacggaa aaaggaggca agataaaatg aactgccgac atttaagatt
     1801 gatcagccgc tatgccgata atgagcttaa cccgggaaaa aaggcgttta tggatacgca
     1861 catccttacc tgctttctat gcctgcatga actaaaaggc atactctcaa taaaagaagg
     1921 catccaaaag aataaaattg gctccccgcc tgaatttttc tggcagacgc ttaaagagaa
     1981 gattcgcaaa gaagaaaata cctgcgctaa aaccgaggag tttacctttg actttgccag
     2041 gtggagccgc aggcttatcc ctgtgccggt attggccagt cttttaatag ttattttgtt
     2101 aaacctaaac caaaccaacc tggtggatga atatctgttc gccaaccagg ataacagcgt
     2161 cctggaattg attgaaaatc ccgggaacca gtcaatatca ggatggctgt attaaaaaat
     2221 ggggaaataa ttaagggtcg atggctttgg ctataggaag ccaaaccatg ggctgacggc
     2281 ctatagtcga tggccgatag tcaataaaag aggtgaacta
//
LOCUS       DATDUB010000008         2476 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_673095, whole genome shotgun sequence.
ACCESSION   DATDUB010000008 DATDUB010000000
VERSION     DATDUB010000008.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2476)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2476)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2476
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_673095"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1144
                     /locus_tag="VJA84_00130"
     CDS             <1..1144
                     /locus_tag="VJA84_00130"
                     /inference="COORDINATES: protein motif:HMM:NF020260.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40566.1"
                     /translation="AERKLIDLAGTDNLIQRIAQALRLEPKNILEEKRDFEGLSIHLV
                     LGDINIQRTRKDMQFIFVNKRPVQNKTIAFHLNDIYRRLFSRGIYPFFCADITMPPGD
                     LDVNVHPSKREVKIKNESGLISLLRGLAEQLLMTKSKAKQAILPQASLDAPPAYPRQN
                     SPPPSGQQGLFNFERSAFSFRQDSALSRDETASLIGKLRQGRYIGNLLRKYLLFETAD
                     SLLVLDQHAAAERINFEKLKGEIENGKVEIQQLLSPILVKLSHQEILAWEGNKEVIEK
                     AGFSCTLFDQETLAIHAHPNLITQAENSLRNLLAGEALPKLSPRALARLACKSSVTFG
                     QNITHQAAEYQREKLLACQTPFTCPHGRPTAIEISDDSLIRQFLRK"
     gene            complement(1164..1883)
                     /locus_tag="VJA84_00135"
     CDS             complement(1164..1883)
                     /locus_tag="VJA84_00135"
                     /inference="COORDINATES: protein motif:HMM:NF014704.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CvpA family protein"
                     /protein_id="HLD40567.1"
                     /translation="MNELDIMLIAAVVVSSLMGYFKGLIKEAMGVFGVIVSVVVTYIY
                     FKKGGSVLSLSLIFILTNLGFITAFWALKKFVWQSELKLSSFQRLGGVAIGFVKGMVS
                     VLIVLASLALFAGIIKVTRPDINKYVETSVLYKRYQEINRAFNRAGVKDTAESFKSSP
                     GPGGLPKEVVKEFIKIGSVKAILEDKQLIEDLNQEDYAKVIGNPKFLKLLNDTEFLKQ
                     VVALGLRQGGQSAREKSGSGE"
     gene            complement(1944..>2476)
                     /locus_tag="VJA84_00140"
     CDS             complement(1944..>2476)
                     /locus_tag="VJA84_00140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015894411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="acetyl-coenzyme A synthetase"
                     /protein_id="HLD40568.1"
                     /translation="PGMLRGIYGDKERYKQTYWSKWPGKYFPGDGARKDSDGYFWILG
                     RIDDVVNVAGHRIGTAELESIFVEHPGVAESAVIGIDHEIKGKCLVGFITLKEGVIAA
                     ETLEKELKEWAGKKIGRFAIPDKIIFSADLPKTRSGKIMRRLLRDIATGRALGNVTTL
                     AEANVIEQLREKYEEA"
BASE COUNT          648 a          713 c          511 g          604 t
ORIGIN      
        1 cgcggaaaga aagctgattg acctggccgg gacagacaac cttattcaac ggattgccca
       61 ggccctgcgt ttggagccga aaaacatcct ggaagaaaaa cgcgactttg aaggcctgtc
      121 tattcatctg gtcttaggcg acatcaatat ccagcgcacc cgcaaggata tgcagtttat
      181 cttcgttaat aagcgcccgg tgcaaaataa aaccattgct tttcacctta acgacattta
      241 ccgccggctt ttcagccgcg ggatataccc ctttttctgc gcggacatca ctatgccgcc
      301 cggggattta gatgtcaatg tccacccctc taaacgcgaa gtaaagataa agaatgaaag
      361 cggattaatc agcttactgc gcggccttgc cgaacaactg ttaatgacta aaagcaaagc
      421 caagcaagcc atcctgccgc aggcatccct ggacgcgcct ccagcctatc cgcggcagaa
      481 ttcaccgccc ccttccggcc aacaaggttt atttaacttt gaacggagcg ccttttcatt
      541 ccgacaagat tccgcgctct cccgggacga gacagcctcc ttaatcggga aactccggca
      601 aggccgttat atcgggaacc ttctgcgcaa atacctttta tttgagaccg cggactcgct
      661 tttggtcctg gaccagcacg ccgcggccga gaggataaac tttgagaaac taaaaggtga
      721 gattgaaaac ggtaaggtgg aaatccagca gttactaagt ccgatattgg ttaaactttc
      781 acatcaggag atattggcct gggagggaaa taaggaagtc atagagaaag cgggtttttc
      841 ctgcacgctc tttgaccaag agaccctggc aatacacgcc catcccaact taatcactca
      901 agccgaaaac agcctgcgta acctcctggc cggggaggcc ctgcccaagc taagcccgcg
      961 ggccctggcc cggttggcct gcaaatcctc ggtgaccttc ggccagaata taacccacca
     1021 ggccgccgaa taccagcgcg aaaagcttct ggcctgccaa acccctttca cctgcccaca
     1081 cggccggccc acggcaattg aaatcagcga cgattccctg atccgccaat tcttgagaaa
     1141 ataaacctct gattctctat ctcttactct ccggagccgc tcttttcccg ggcagactgg
     1201 ccaccctgcc gcaatcccag ggcaaccacc tgctttagaa actctgtatc atttaaaagt
     1261 ttgaggaatt taggattgcc gatgacttta gcgtaatctt cttgattgag gtcctcaatc
     1321 aattgcttat cttctaatat tgcttttacc gaaccaatct tgataaattc tttaaccact
     1381 tctttaggca ggcctcccgg acccgggctt gatttgaatg attcggctgt atctttaacg
     1441 cccgccctat taaaagcgcg atttatttcc tggtatcgct tatacaggac agaagtctcc
     1501 acatatttat taatatcagg cctggttacc ttaattatgc ccgcgaataa ggccaaagaa
     1561 gccagcacaa tcaacacgga taccatgccc tttacaaagc cgatagccac tcctcccagc
     1621 cgctgaaaag aagagagttt aagctcgctt tgccagacaa atttcttgag cgcccaaaaa
     1681 gccgtgataa aacctaaatt ggtaaggata aagatcaaag ataaagagag cacactcccg
     1741 cccttcttaa aataaatata ggtaactacc acgctgacaa ttacaccaaa tactcccatc
     1801 gcctccttaa taaggccttt gaaataaccc atcagggaac tcaccaccac cgcggcaatc
     1861 agcattatgt caagctcatt catagaataa taatctcctt tattttatcc cttccctccc
     1921 cggcaggcaa gcgggcctga cagctaagcc tcttcatatt tttctcttag ctgttcaatg
     1981 acattagctt cagccaaagt agtaacattg cctaacgcgc gtcctgtcgc gatgtccctc
     2041 aagagccggc gcataatctt cccggagcgg gttttaggta aatccgcgga gaaaataatc
     2101 ttatcgggga tagcgaacct tccgattttc tttcccgccc attccttcaa ttctttctcc
     2161 agggtttcgg cggctattac tccttctttg agggtgataa acccgaccag gcatttacct
     2221 ttaatttcat ggtctattcc aatcaccgcc gattccgcga caccgggatg ctccacgaat
     2281 atgctctcaa gttcagccgt cccgatacgg tggccggcca cattgaccac atcatcaatc
     2341 ctgccgagga tccagaaata tccgtcgcta tcctttcttg ccccgtcccc gggaaagtat
     2401 ttcccgggcc acttggacca ataggtttgt ttatatcttt ccttatcccc gtaaataccg
     2461 cgcagcatcc ccggcc
//
LOCUS       DATDUB010000009         6529 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_506559, whole genome shotgun sequence.
ACCESSION   DATDUB010000009 DATDUB010000000
VERSION     DATDUB010000009.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 6529)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6529)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6529
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_506559"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1001
                     /locus_tag="VJA84_00145"
     CDS             <1..1001
                     /locus_tag="VJA84_00145"
                     /inference="COORDINATES: protein motif:HMM:NF013257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase family 9 protein"
                     /protein_id="HLD40569.1"
                     /translation="GGMGDFLLSLSAVSALRDFYKDAWLVLLTIPRTKPVAEAFPYFN
                     EIIAFDFSFWGAFKRALALRRRHFDLAINMRTLVSCLGALKMAFLFYLIGAKLRAGRD
                     TSGRGFFLDIKAPEDDVGSLPEYEYDLNTVRALGVPAQFSLPEIPLSGEDDAYIDDFL
                     KNCNIKSSDMIIGINPFASWRSRCWPIENFALLINALQKEFSCKIVITGSSDEVERAL
                     ELQGLAGAEMAIASGKTTFGQLAALIKRCSLYITNDTGSVHLAAILQTPMIALFGAGD
                     LKRFDPRNISKKAIVFHKDVDCSPCDKVNCDSMKCLKEITPDEVIDAARNFLGCNR"
     gene            1005..1787
                     /locus_tag="VJA84_00150"
     CDS             1005..1787
                     /locus_tag="VJA84_00150"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HLD40570.1"
                     /translation="MSFPGLTGESRRLDSRFRGNDILIYFKIMNLLEKIYLWFRDLVS
                     QPGERGLSSAGYWQNILRRNVLERLVKAEGGLLEIGCGEGLFLEQLSRINPRLRLFGI
                     EREGAVLSGAKSRLNSDIRLVASDALRLAFKDASFEWVVGVNLSICVESGEALAEILR
                     EAGRALKPGARLIIEFRNKGNIFLRLKYKWAGHYDSTTQNHPLSVYYKKDVLDILGEA
                     GFKVNRIQEIDFPFKGLAAIFIVEAQKKGSESFLTDGKGQEK"
     gene            1784..3019
                     /locus_tag="VJA84_00155"
     CDS             1784..3019
                     /locus_tag="VJA84_00155"
                     /inference="COORDINATES: protein motif:HMM:NF013227.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS family aminotransferase"
                     /protein_id="HLD40571.1"
                     /translation="MTLTPFLPIIGHPITLGDLAYGIGHSFDHKAKDLFAEALAEFLG
                     LRHIYFLNSGLAAFYIILEALKNKSSRKEVILPAYTAPNLILAIRKAGLKPALCDISL
                     VDFNADLEDVLNRITPDTLCVLGVHMFGIPWQDILSLREKAGKDVFIVEDCAQAFGVK
                     IEGGPLALAMGSQTTALWPAGSFSDAAFYSFNRGKNLPTYEGGCIAVNSNELAGCIED
                     GISRLPAVGSLRTVSSAFKSLALALSFNPYFYGLFFPFISCFKDNRVAFDFEARAYSL
                     FQSGLGYSLFKKSDSALKRRFENGMRLLSGLQGIEGIILPRISGRISPAFNRLPVVFK
                     DETKIETLMRALDKAGIESSRLYRRPLHHIFDLGYKKEDFPNAVCLAKGLLTLPAHPL
                     VKAKDINKMIRIIRDVSSS"
     gene            3003..4154
                     /locus_tag="VJA84_00160"
     CDS             3003..4154
                     /locus_tag="VJA84_00160"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HLD40572.1"
                     /translation="MFPLRNLKRFLGKTLRQPFYALSVGWKRAQSGLAYNFGRGRSSY
                     PEAITFFLTRLCNLRCKMCGQWGDNGAARSQEPELLKARLSLEEIRGVIDEVSLFKPS
                     ITLFGGEPLLHPEVIKIISYIKDKGLHCLMITNGTLLPELAAGLVEAGLDELNVSVDG
                     PGELHDQIRGLPGAFDKIARGIELVNSAKERLDRDKPLVNIQCTVNRHNYERLEEIIK
                     VAREFKANALTFHNLIFLNQEAIDGQKRIDGLLDCSSKDWEGFVFDPGIDPERLYQKL
                     KSILKGKYPFSVDYFPNFSEEAFLSYYRGDYVPRDYGSRCLSPWACGYIFPDGEVRPC
                     LNSSYSFGNIKNKSFKEIWNSQKALEFRRLLKRHKIFPACVRCTELYRY"
     gene            4154..5317
                     /locus_tag="VJA84_00165"
     CDS             4154..5317
                     /locus_tag="VJA84_00165"
                     /inference="COORDINATES: protein motif:HMM:NF024831.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HLD40573.1"
                     /translation="MRKIKVAQVITRMDWGGSPDIVRILCERLSSDRYEVWLLTGGTE
                     HPGKKTEDFFRRFKDRIIFVPELKRDVLPVSDLAAFFRLYFLFLKHRFDIAHTHTAKA
                     GFLGRVAAKLAGVKMVIHTPHGNNFYGYFGRMFSALVVWLERFADCFTDRTIVLTELE
                     KKDLIAYGVSKKEKIFVVPSGLELEEYSKGKADIAAKRQELGVSDANEAVVAMIGRLE
                     PVKGPGYFIEAAGLVLKEFPAVRFLLAGDGSLKERLKRRSEELGIGDRIVFLGWREDV
                     PEILSAVDILALPSLNEAVGRVILEAGCLGVPAVASRTGGVPEIIRDGSTGILVSPGS
                     ARELAEGILLLFRDKEKRRAMGQAAKEWVSGEFSAGNMVKQIEGLYGETVMPR"
     gene            5535..>6529
                     /locus_tag="VJA84_00170"
     CDS             5535..>6529
                     /locus_tag="VJA84_00170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40574.1"
                     /translation="MLLNSLYSIVIVLFVSSIASAGELFQAPAVIQIASTVSDGKYSL
                     EEIVRTARENGVKIIVLGERDFMRWEYGLWPFRGLIKKTVKSNSLSAYGIERYLKEIE
                     LLRKENPDMLIIPGVESAPFYFWEGSPWRKNLKIKNWHKHMLVVGLEKKEDYEFIPSL
                     SNPLGLRESFRYDQYHGDLGPKPYQNLIDYVNQRNGLIYWAHPEAGNISSRGDIGIET
                     KGYSADLGRTYGYTGFTVFYDGYEKTARPGLIWDGLLKEYCAGIRTQPVWAIGGLGFD
                     QGGELSAAIKDLRVVLLLSEWSQEAVLTALREGRNYVLLGEVDLRLEDFSLENKDA"
BASE COUNT         1552 a         1356 c         1869 g         1752 t
ORIGIN      
        1 tgggcgggat gggggatttt cttttgagtc tttcggcggt atcggctttg cgggattttt
       61 ataaagacgc ctggcttgtc ttattgacta tccccaggac caagccggtg gccgaggctt
      121 ttccttattt taatgagata atcgcctttg actttagttt ctggggggcg tttaagcggg
      181 cccttgcctt gcgccgcagg cattttgatc tggccataaa tatgcgcacc ctggtttcct
      241 gtctaggcgc tttgaaaatg gcttttcttt tttatcttat cggggccaag ctccgcgccg
      301 gacgggatac ttccggaaga ggtttctttc tggatatcaa ggcgccggaa gatgatgtcg
      361 ggagcctgcc tgaatacgag tatgacctga atacggtcag ggccttaggt gtcccagcgc
      421 agtttagcct tccggaaata ccgcttagcg gcgaggatga cgcttatata gatgatttcc
      481 tgaagaactg taatattaaa tcttcggata tgattattgg cataaatcct tttgcttcct
      541 ggaggagcag atgttggccg atagagaatt tcgccttgct gattaatgcc ctgcaaaagg
      601 aattttcctg taagatagtg attaccggct caagtgatga ggttgaaagg gctcttgaat
      661 tgcagggctt ggcgggcgcg gagatggcaa tcgcttccgg caagactact ttcggccaat
      721 tggccgcctt gattaagcga tgttcgctgt atatcaccaa tgataccggt tctgtgcatc
      781 tggcggcgat attgcagacg cctatgatag ccttgtttgg cgcgggcgat ttgaagcgtt
      841 ttgaccccag gaatatctct aagaaagcaa tcgtttttca taaggatgtg gattgctctc
      901 cctgcgataa ggtcaattgc gattcaatga agtgtttaaa ggagataacc ccggatgagg
      961 tcatagatgc ggcaagaaat tttttaggat gtaatcggta aacattgtca ttccccggct
     1021 tgaccgggga atccagacgc ctggattccc gctttcgcgg gaatgacatt ttgatttact
     1081 ttaaaattat gaatcttctt gagaaaatat atttatggtt tcgcgatttg gtttctcaac
     1141 ccggagaaag agggctgtct tcggccgggt attggcaaaa tatcttaagg cggaatgtct
     1201 tagaaaggct ggttaaggct gagggtggat tgctggagat cggctgtggg gagggattat
     1261 ttcttgagca gttgtcccgg attaatcccc gtcttcggct gtttgggatt gagcgcgaag
     1321 gcgctgtctt gtccggagcc aaaagccggc ttaacagcga tatccgtctg gtagcttctg
     1381 acgccctgcg gctggccttt aaggatgcct cttttgaatg ggtggtgggg gtcaatcttt
     1441 ctatctgcgt ggaatctggt gaggccttgg cggagatttt gcgggaggct ggccgggcgc
     1501 ttaaaccggg ggcgagatta atcattgaat tcaggaataa gggcaatatt ttcttaaggc
     1561 taaaatataa atgggccggg cattatgatt ctaccaccca aaatcatcct ttaagcgtat
     1621 attataagaa agatgtgctt gatattttag gcgaagccgg ttttaaggta aacaggatac
     1681 aggagattga tttccccttt aaaggcctgg cggcgatatt tattgtggag gcccaaaaaa
     1741 aggggtcaga gtcattttta accgatggaa aggggcagga aaaatgactc tgaccccttt
     1801 tttaccgatt atagggcatc cgattacttt gggtgacctg gcttatggta tagggcatag
     1861 ctttgaccac aaggccaaag atttgtttgc cgaggctctg gcggaattcc tgggcttgag
     1921 gcatatttat ttcttaaatt ccggcttggc cgctttttat ataatcttag aggccttgaa
     1981 aaataagtcc tcccggaaag aggtgatttt accggcctac accgccccta atcttatcct
     2041 tgccatccgc aaggccgggc ttaagccggc gctatgcgat atcagcctgg tggattttaa
     2101 tgccgactta gaagatgtct taaacagaat taccccggat accctttgcg tgttaggggt
     2161 gcatatgttt ggcatccctt ggcaggatat cctaagttta agagaaaaag cggggaagga
     2221 tgtttttatt gttgaggatt gcgcccaggc ctttggggtc aagatagaag gtgggccgtt
     2281 ggctttggca atgggaagcc aaaccacggc cctctggcct gcggggagtt tctctgacgc
     2341 cgctttctat agctttaacc ggggaaagaa cctgcccact tatgaaggtg gatgtatcgc
     2401 ggttaattct aatgagttgg ctgggtgtat agaagatggt atctcaaggc ttcctgccgt
     2461 cggttctttg cggacggttt cgtcagcctt taaatccctg gctttagccc tttcttttaa
     2521 tccctatttt tacggcttgt ttttcccttt tatcagctgt tttaaggata accgggtggc
     2581 ttttgatttt gaggcgcgcg cctacagcct ttttcaatcc gggctggggt attctttatt
     2641 taagaaatct gattcggcgc ttaagcgtcg ttttgagaac gggatgcgcc tgctttcggg
     2701 tttacaaggc atagagggca tcatcctgcc gcggatttca gggaggatat cgccggcctt
     2761 taaccgtctg ccggtggtat ttaaagacga aacaaagatt gagacgctaa tgcgcgctct
     2821 ggataaggcg gggattgagt cctcccggct gtatcgtagg ccactgcatc atatatttga
     2881 tttaggatat aagaaagagg attttcctaa cgcggtttgc ttggcgaaag gccttttgac
     2941 cctgccggcg catcctttgg taaaagcaaa agatattaat aaaatgataa ggataatcag
     3001 agatgtttcc tcttcgtaat ctgaagcgtt tcctgggcaa gaccttgaga cagccgtttt
     3061 atgccctatc cgtagggtgg aaaagggcgc aatccggctt ggcttataat tttggccgag
     3121 gcagaagcag ttaccctgaa gcaatcacct tttttctcac ccggctgtgc aacctgcgct
     3181 gtaagatgtg cgggcagtgg ggggataacg gcgcggccag gtcccaggag ccagagctgt
     3241 taaaggcgcg cttaagcctg gaagaaattc gcggggttat agacgaggtt tctttgttta
     3301 agccgagcat cacccttttt ggcggagagc cgttattgca tccggaggtc attaagatta
     3361 tcagttatat aaaagacaaa ggcctgcact gcctgatgat taccaacggc acgcttttac
     3421 cggaattggc cgcgggctta gttgaggctg gtctggatga attgaatgtc tcggtagacg
     3481 gcccgggtga actgcacgac cagatccgcg gcctgcccgg ggcctttgat aagattgccc
     3541 gggggataga gctggtcaat tccgcgaaag agcgcctgga ccgggataag ccgcttgtca
     3601 atattcaatg caccgtcaac cggcacaatt atgagaggct ggaagagatt attaaagtgg
     3661 caagagaatt taaggccaat gcccttactt ttcacaacct gatctttctg aatcaggaag
     3721 ctattgacgg acaaaagagg attgacggat tattggattg ctccagcaaa gactgggagg
     3781 gatttgtctt tgacccgggc atagaccccg aaaggcttta tcagaaatta aagtctatcc
     3841 tgaaagggaa ataccctttc agcgtggatt atttcccgaa tttctctgaa gaagcctttt
     3901 tgtcttatta ccgcggcgat tatgtccccc gcgactacgg cagccgctgt ttgagcccct
     3961 gggcctgcgg ttacatcttt cccgatggag aagtgaggcc ttgcctaaac agcagttatt
     4021 ctttcggcaa tatcaaaaat aagtctttta aggaaatctg gaacagccaa aaagccctgg
     4081 agttccgccg cttgcttaag aggcataaga tatttccggc ctgtgtaaga tgcacggagt
     4141 tgtatagata ctaatgcgaa aaattaaggt tgcccaggtg attaccagga tggattgggg
     4201 gggctcgccg gatattgtga ggatactctg cgagcgcctg tcttcggaca ggtatgaagt
     4261 ctggcttctg accggaggga cggagcatcc cggcaagaag acggaggatt tcttccggcg
     4321 ctttaaagac aggattatat ttgtcccgga gttaaaaagg gatgtcctgc cggtgagcga
     4381 cttggcggca ttctttaggc tctatttttt attcctgaaa cacagatttg acatcgcgca
     4441 cacccatact gccaaggccg ggttcctcgg gcgcgtagcc gctaagctgg ccggggtgaa
     4501 gatggtaatc cataccccgc acgggaataa tttctacggc tatttcggga ggatgttcag
     4561 cgctttagtg gtttggctgg aaaggtttgc cgattgtttc actgacagga ccatcgtttt
     4621 aacggagctg gaaaagaaag acctgattgc ttatggggta agtaaaaaag aaaagatttt
     4681 tgtcgttccc agcggcctgg agctggagga atactctaag gggaaggcgg atattgccgc
     4741 gaagagacag gaattgggag tcagtgacgc gaatgaggct gttgtggcaa tgattggccg
     4801 gctggagccg gtgaaggggc cggggtattt tattgaagcc gcggggctgg ttttaaaaga
     4861 atttccagcc gtaagatttc tattggccgg agacggttcc ttaaaagaaa ggctgaaaag
     4921 gcgctctgaa gaattgggca tcggggatag gatcgtcttt ttaggctggc gggaggatgt
     4981 cccggagata ctttcggcgg tagatatttt agccctgcct tctttaaatg aggcggtggg
     5041 ccgggttatt cttgaggccg gatgtctggg ggtgccggca gtggcctcca ggacaggcgg
     5101 ggtgccggag ataatccggg acggctctac cggaattttg gtcagtcccg gcagcgcgcg
     5161 ggagttggct gaagggatat tactgctttt tcgggataag gaaaagagga gggcaatggg
     5221 gcaggcggct aaggaatggg tttccggcga attcagcgcc gggaatatgg tcaaacagat
     5281 agaggggtta tacggtgaaa cagtcatgcc ccgctaaaag cggaacgcca atgaaaatta
     5341 gacaaacttc cgaagtcctg cgtcaggtat cccgtgcaca aacatcctct ggctgcggct
     5401 atcggaagcc gcaccatcgc cctctggctt aggtgttttt ctggattgat gcattatgga
     5461 aagacgcctg cggaactgcg cgcgggacac ctgccgcagg ccttcccgat aaagttgata
     5521 tggacatttt taagttgtta ttgaatagcc tttattccat agttatcgtt ttatttgttt
     5581 cctcaatagc ttctgccggt gaattgttcc aggcgccggc ggttatccag attgcctcta
     5641 cggtaagcga tgggaaatac agcctggagg agattgtccg gaccgcacgg gagaacgggg
     5701 tcaagataat tgttctgggg gagcgggatt ttatgcgctg ggaatacggg ctctggccat
     5761 tccgaggcct gataaaaaag accgtgaaat ccaattccct gtctgcctac ggaatagaaa
     5821 ggtatcttaa agaaatagag ttactgcgaa aagaaaaccc ggatatgctg attattcccg
     5881 gggtggagtc agcgcctttt tatttctggg agggctctcc ctggcgcaag aacctgaaga
     5941 tcaagaattg gcataagcat atgctcgttg tggggctaga aaaaaaagag gattatgaat
     6001 ttatcccttc gctttctaat cccctggggt taagggagag ttttagatat gaccagtatc
     6061 acggtgacct ggggccaaaa ccatatcaaa acctgattga ttatgtgaat caaagaaatg
     6121 gtttgattta ttgggcccat ccggaggccg ggaatatcag ctcccggggc gatatcggga
     6181 tagaaactaa aggatattcg gcggatctgg ggaggactta tggctatacc ggctttacgg
     6241 tgttctacga cggatatgaa aagaccgcca ggcccggctt aatctgggat ggactgctta
     6301 aggaatactg cgccgggata aggacacaac ctgtgtgggc tattggaggc ctgggatttg
     6361 accagggggg agagctttcc gcggcgataa aggatttacg ggtggtcttg ctgctttccg
     6421 aatggagcca ggaggcggta ttaaccgcct taagagaagg caggaactat gtgcttttgg
     6481 gtgaagttga tctgcggctg gaggattttt cgctggaaaa taaggacgc
//
LOCUS       DATDUB010000010         3007 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_2012375, whole genome shotgun sequence.
ACCESSION   DATDUB010000010 DATDUB010000000
VERSION     DATDUB010000010.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3007)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3007)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3007
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2012375"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(385..546)
                     /locus_tag="VJA84_00175"
     CDS             complement(385..546)
                     /locus_tag="VJA84_00175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40575.1"
                     /translation="MEAKRAFSTIESALIIAIVVAALIGMSVYLKRAVCGKWRDTADT
                     FGYGRQYSP"
     gene            complement(516..983)
                     /locus_tag="VJA84_00180"
     CDS             complement(516..983)
                     /locus_tag="VJA84_00180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40576.1"
                     /translation="MKDQSQVKVLGAAGAVIIGFFIFQNFFVPRDDIGLCRHILKKLV
                     NSSSSVEKLIDWEALKSGEVEVGKTFSGYSDPKQKLVYKNAFIRSFSLSFKLTGAKLG
                     DFYGWRVYARDSQKTTVAVDGKGGTVYFSLSNPRYGNKKLIDIQWKLKEPSQP"
     gene            complement(1002..>3007)
                     /locus_tag="VJA84_00185"
     CDS             complement(1002..>3007)
                     /locus_tag="VJA84_00185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40577.1"
                     /translation="AGAVGGGVGAMASGTNVLQGAAQGAAIGAAIGGIAAGSIGMINP
                     AYFSTLSSYGAFGMWPTYATLSSSTLWGAIGTGVMGLGSTLYKAMSEANAVDQGFSQA
                     AKVLNGLPQRDIYRESVFLNVFSQTIDDPNRTDSKYVQLFEDTDCDGKKDTHYCVAKP
                     GAGRKENCDPHDFNGNGDKDEAVPYFQYWWERRVDQLKKVIPELELMTQDFVSINQCP
                     SGSGCTRTASDYAGYCDNKQPLSDFQASAQAAFTTQYQGDCFVRFCDFTWTPGPLYRR
                     TAGTAGGSDEWKEYLICPEESSACKDTLELPPENNGVVVQVAEALARIGKGVSFYKGT
                     FSDSRYGEDCDGDCRDESHFDEMEAVIAELGGFADNVGALKGQSYQKLTSVWDSWIRM
                     FYDPDTKDGDGEVIKNRDDYYDTLEVLVEGNREVKGVREWKEEIAEKKYRYGNSFPEC
                     IDSYRSSTVTNFPCRVGSGDCSSSAGCVITTDSNPDDDFARALLAIDKIIVDIAVYRS
                     KSKNYYESMNRAYDSMDTDYGGLNPVTYQWADSRCPKDTGDLDKDGDKEETLPCHGLT
                     IQVSNFKLPWVRQKKSGGFLTKKTCLILTDYQDNGTNTWVTVSREDLANQAIGGALGS
                     WNYCGPKDPNCVVEEKFFNQNMFKTSRTSKAYYSHDKVGLASK"
BASE COUNT          750 a          833 c          642 g          782 t
ORIGIN      
        1 gcaaaacggc agagaaggca aggctcagga ggctctgcaa gcaacgatct tgtggcaggc
       61 atacatatca ctaccccgga aaattgatgc aagaaatatg cggagggtta aatcaatttc
      121 aactaaaatt tgcattgact ccaattgctt tgtggttcgg attggaacaa taccgccttc
      181 accaccccaa accccacccc taatcccaca aataaaaaag cgccttctct tcctccggga
      241 gagaaggcgc cgacttccac caatgttaat ggtccctact ttcagttcac cgaactaatt
      301 aagtgatgtg tccccggaat tccccaccga actaattaag tgatgtgtcc ccggaattcc
      361 ggaattccgg aattcccgtg ctacttacgg cgaatactgg cggccgtagc cgaaggtgtc
      421 ggcggtgtcg cgccatttgc cgcagaccgc ccttttcaga taaaccgaca tcccgatcag
      481 ggccgcgacc acgatggcga taatcagcgc ggattctatg gttgagaagg ctcttttagc
      541 ttccattgga tatcaatcaa ctttttattt ccgtacctgg ggttagacag gctgaaatac
      601 accgttccgc ctttaccgtc aacggcaacg gtggttttct ggctgtcccg ggcatagacg
      661 cgccaaccgt aaaaatcccc cagcttggcc ccggtcagct taaaactcaa ggaaaagctc
      721 cggataaagg catttttgta gactaatttc tgcttcgggt cggaatatcc ggaaaaggtt
      781 tttcccacct ccacctcgcc ggactttaag gcctcccaat caatcagctt ttccaccgaa
      841 gaactgctgt tgactaactt ctttaaaata tggcggcaga ggccgatatc atcccggggg
      901 acaaagaagt tctggaaaat aaaaaaaccg ataatgaccg cgcctgcggc ccctaaaacc
      961 ttgacctgcg attggtcttt cattttttat cctctttttt attacttgct ggccaggcct
     1021 accttatcat gactataata ggcttttgat gtccgggaag tcttaaacat attttggtta
     1081 aagaattttt cttctactac gcaatttgga tctttgggcc cgcaatagtt ccagctcccc
     1141 agagctccgc cgatggcctg gttggccagg tcttcccggc tgaccgttac ccaggtatta
     1201 gtgccattgt cctgataatc agtaaggata agacaagtct tcttggtaag aaatccaccg
     1261 ctttttttct gccgtaccca gggtaacttg aaattactga cctgaatggt caggccatgg
     1321 cagggaaggg tttcttcttt atctccatcc ttatctaaat ccccggtatc cttgggacaa
     1381 cgggaatcag cccactggta ggttaccggg tttaggcctc cgtaatccgt gtccatacta
     1441 tcataggccc tattcataga ctcataatag tttttagact tggaacgata gaccgcaata
     1501 tccacgataa ttttgtctat ggcgagtaag gcccgagcaa aatcatcatc gggattgcta
     1561 tccgtggtta ttacgcagcc ggcgctacta ctacagtccc cgctgccaac ccggcaggga
     1621 aaatttgtta cagtagaaga acgatagcta tcaatacact ctgggaaaga attgccatac
     1681 ctatatttct tctccgctat ctcctctttc cactccctga cgccctttac ctcgcggttc
     1741 ccctcaacca gaacctctaa ggtgtcatag tagtcatccc tattttttat gacctctccg
     1801 tccccatctt tggtatccgg atcataaaac atccggatcc aggaatccca gaccgaggta
     1861 agcttctgat agctttgccc cttcagggca ccaacgttat ccgcgaatcc gcctaactcc
     1921 gctattactg cctccatttc atcgaaatga gattcatccc tacaatcccc atcgcagtct
     1981 tcaccatatc tactgtcgga aaacgtacct ttataaaaag aaactccctt tcctattcta
     2041 gccagggcct cagccacctg aaccacgact ccattatttt caggcggcaa ttcaagggta
     2101 tccttacagg ccgaagactc ttcaggacag atgagatact ctttccattc gtcgctgcca
     2161 ccggctgttc ccgcggtcct tcggtataag gggccggggg tccaggtaaa atcacaaaat
     2221 ctgacaaaac aatctccttg gtattgagtg gtaaaagccg cctgggctga ggcttggaaa
     2281 tcgcttaagg gctgtttgtt gtcgcagtat ccggcgtagt cggacgccgt tctggtgcaa
     2341 cccgagcctg acgggcattg gttaatagaa acaaaatcct gggtcatcaa ttccaattcc
     2401 gggataactt ttttgagctg atccacccgc ctttcccacc aatactggaa atagggcacg
     2461 gcctcatcct tatccccgtt accgttaaaa tcgtgagggt cgcagttttc tttcctgccg
     2521 gcgccaggtt tagccacgca ataatgagta tctttttttc cgtcgcaatc cgtatcctcg
     2581 aaaagctgca catatttgga atcagtccgg ttaggatcat caatggtctg ggagaaaaca
     2641 ttcaagaaaa cactctcccg gtaaatgtcc ctttgcggca ggccgtttag gaccttggcg
     2701 gcctgggaaa aaccttggtc tacagcatta gcctcgctca tagctttata aagagtactg
     2761 cctaagccca taacaccggt gccaatggcg ccccataaag tgctagaaga aagggtagca
     2821 tatgttggcc acattccaaa cgcaccataa ctacttaggg ttgaaaagta tgctggattt
     2881 atcatcccta tactcccagc ggctattccc ccaatagccg ccccgatagc cgcgccttga
     2941 gccgcgcctt gcaagacatt agttcccgaa gccattgccc ctactccccc accaactgct
     3001 ccggctg
//
LOCUS       DATDUB010000011         2415 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1678524, whole genome shotgun sequence.
ACCESSION   DATDUB010000011 DATDUB010000000
VERSION     DATDUB010000011.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2415)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2415)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2415
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1678524"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..263)
                     /locus_tag="VJA84_00190"
     CDS             complement(<1..263)
                     /locus_tag="VJA84_00190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011024999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GMP synthase (glutamine-hydrolyzing)"
                     /protein_id="HLD40578.1"
                     /translation="MRKKEKKRKIVHTKAAVKPPVKREMVLVLDFGSQYTQLIARRAR
                     ENHVYSQIVPYNISAQEISEIAPRGLILSGGPASVYEKKSPAP"
     gene            complement(300..1460)
                     /locus_tag="VJA84_00195"
     CDS             complement(300..1460)
                     /locus_tag="VJA84_00195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010994228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003938 - IMP dehydrogenase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GuaB3 family IMP dehydrogenase-related protein"
                     /protein_id="HLD40579.1"
                     /translation="MAEWIGIGRRARRCYGFDEVALAPGTRTCNPNEVDTTFNIGDLS
                     FSVPILAAAMDGVGDVDFAVRMSKLGGLAVINLDGIQTRYDNPDEVLDKIAKASPQKA
                     TELVQSIYTKPVKESLVTKRVHEIKSRKGIACVSCIPANAVCFGKIAQDAGCDIFIVQ
                     STVTTTRHISKEYKALDLHRFCASMKIPVVIGNSVTYEVTLELMETGASALLIGVGPG
                     AACTTRGVLGIGVPQVTATVDASAARDYYYKRTGRYVPIITDGGMRIGGEICKAFASG
                     ADAVMVGSAFARAKEAPGRGYHWGMATSHVNLPRGTRVKVGVSGTLKEILFGPAKVDD
                     GSQNLMGALTTCMGSLGVTNIKEMHDVEMIIAPSIQTEGKIFQVVQGVGMGK"
     gene            complement(1537..2058)
                     /locus_tag="VJA84_00200"
     CDS             complement(1537..2058)
                     /locus_tag="VJA84_00200"
                     /inference="COORDINATES: protein motif:HMM:NF014471.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015109 - chromate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015703 - chromate transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chromate transporter"
                     /protein_id="HLD40580.1"
                     /translation="MILVKLFLAFFQIGLFAIGGAYSFLPLIEREVVQKYHWLSKEEF
                     LDVLGITSVFPGAISIKFATYTGYKIAGIWGAVCANIGNMLAPCLILIGASFFYLKHK
                     NAPLVKNAFAMVELAIFAMIIAVAFQSINPGRLIQPRNIIVVILTFSLFLYTRIHPAL
                     IIISAGVIGIIWK"
     gene            complement(2059..>2415)
                     /locus_tag="VJA84_00205"
     CDS             complement(2059..>2415)
                     /locus_tag="VJA84_00205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006781317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030151 - molybdenum ion binding [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MogA/MoaB family molybdenum cofactor
                     biosynthesis protein"
                     /protein_id="HLD40581.1"
                     /translation="EIVPDEPEAIKAKLKDYADNLKADLVLTTGGTGFSPRDNTPEAT
                     KAILDKEVPGIPEIMRIECFKFSKRAVLSRAVCGIRGRTLIVNLPGSAKAVKESLGVI
                     SDILVHSLDMIAGKDH"
BASE COUNT          585 a          687 c          543 g          600 t
ORIGIN      
        1 tccggagccg ggctcttttt ctcatagacc gatgccggac ctccggaaag gattaagccc
       61 cggggggcaa tctcggagat ctcctgcgcg ctgatattat aggggactat ctggctgtaa
      121 acatggttct ccctcgcccg acgggcaatc aattgggtat actgggagcc aaaatccagg
      181 accaggacca tctccctctt aaccggaggt tttaccgcgg ccttggtatg gactattttt
      241 cttttctttt cctttttacg cattatctta attcttgact cttgattctt gactctgctt
      301 tacttcccca tccccacgcc ctggaccacc tggaatattt taccctcggt ctggatgctg
      361 ggggcgataa tcatttccac atcatgcatt tccttgatat tcgtaacgcc taaggaaccc
      421 atgcaggtag tcaaagcgcc catcagattt tgagagccgt cgtcaacctt ggccgggcca
      481 aagaggatct cctttaatgt gccgcttact ccgaccttta ccctggtccc ccgggggaga
      541 ttgacatgcg aagtagccat gccccagtga taacctcttc ccggggcctc tttagcccgg
      601 gcaaaggcgg agccgaccat taccgcgtcc gcgcccgagg caaaggcctt gcagatctcc
      661 ccgccgatgc gcatcccgcc gtcggtaatt atggggacat atcttccggt gcgcttgtaa
      721 taataatccc tggcggcaga ggcatccacg gtagcggtta cctggggaac gcctatgcct
      781 aaaacccctc tcgtggtaca ggcggccccc gggcctaccc cgatcaagag ggcgctggcc
      841 ccggtttcca tcagctccaa agttacctca taagtcacgg aattaccgat cactaccggt
      901 attttcatgg aagcgcagaa tctatgcaaa tccaaggcct tatattcttt agaaatatgc
      961 cgggtggtag taaccgttga ctggacaata aatatgtcgc atccggcgtc ctgggcgatc
     1021 ttgccgaaac acacggcgtt tgccgggata cagcttacgc aggcaatgcc tttcctgctt
     1081 tttatctcgt ggacgcgttt ggtgactagg ctctctttta ccggcttggt ataaatgctc
     1141 tggaccaatt cagtggcctt ctgcgggctg gccttggcaa tcttatccaa aacctcatcc
     1201 ggattatcgt agcgggtctg aatcccgtca agattgatta ccgccaggcc tccgagcttg
     1261 ctcatccgaa cggcaaaatc aacatccccc accccatcca ttgccgccgc caagatggga
     1321 acactaaaac tcaaatcccc gatattaaaa gtggtatcca cttcattggg gttgcaagtc
     1381 cgggtgccgg gggccaaagc cacctcgtca aaaccataac agcgcctggc gcgcctgcct
     1441 atgcctatcc attcagccat ctaaaagctc cttttttacg cctattttta atcatttcat
     1501 actaccctaa aacaggacca gagtcaatct tttttcttat ttccaaataa tcccgataac
     1561 tccggcggag attataatta aggcgggatg tatcctggta tacaggaaga ggctgaaagt
     1621 caatattacc acgataatat tgcgcggctg gattagtctg ccgggattga tggactggaa
     1681 ggctaccgcg ataatcatcg cgaagatagc cagttccacc atagcgaagg cattcttaac
     1741 caaaggggca ttcttgtgtt tgagataaaa gaatgacgcc ccgattaaaa tcaggcaagg
     1801 ggcaagcata tttccgatat tagcgcacac cgccccccag attccggcta ttttatatcc
     1861 ggtataagtg gcaaatttaa tggatatggc cccggggaag acgctggtta ttcccaggac
     1921 atccagaaat tcctctttgc ttaaccaatg gtatttctga accacctccc tttctatcaa
     1981 aggcaggaaa gaataggccc cgccaatggc aaacaacccg atctgaaaaa aagccagaaa
     2041 taatttaact aaaatcacct aatgatcctt tccggcaatc atatccaaag aatgaaccag
     2101 gatgtccgag ataaccccca aagactcctt caccgccttg gcgctgccgg gaaggttaac
     2161 aatcaaggtc ctgccgcgta tcccgcaaac agcccgggac aacaccgcgc gcttgctgaa
     2221 tttaaagcac tctatacgca ttatctccgg gatccccgga acttccttat ccaatatcgc
     2281 cttggtcgcc tccggggtat tatccctagg gctaaaccct gtccctccgg tagtcaggac
     2341 caaatccgcc tttaaattat cggcataatc cttgagcttg gctttaatcg cctccggctc
     2401 atccgggact atttc
//
LOCUS       DATDUB010000012         5835 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1511231, whole genome shotgun sequence.
ACCESSION   DATDUB010000012 DATDUB010000000
VERSION     DATDUB010000012.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 5835)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5835)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5835
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1511231"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..210
                     /gene="eno"
                     /locus_tag="VJA84_00210"
     CDS             <1..210
                     /gene="eno"
                     /locus_tag="VJA84_00210"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006980952.1"
                     /note="catalyzes the formation of phosphoenolpyruvate from
                     2-phospho-D-glycerate in glycolysis; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HLD40582.1"
                     /translation="KNKYKAIISHRSGETEDTTIAHLAVATNAGQIKTGSLSRTDRVC
                     KYNELLRIEEELGKKAVYAGKLWKK"
     gene            211..483
                     /locus_tag="VJA84_00215"
     CDS             211..483
                     /locus_tag="VJA84_00215"
                     /inference="COORDINATES: protein motif:HMM:NF016839.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="septum formation initiator family protein"
                     /protein_id="HLD40583.1"
                     /translation="MLKIFKQTSVLVFLGLILIIFFPGYAKIQEMRHKNRKLEADIKR
                     LKAENIALSLEKEKLETDPNYLEQVAREKLGIVKKGETVYRLVPQE"
     gene            575..651
                     /locus_tag="VJA84_00220"
     tRNA            575..651
                     /locus_tag="VJA84_00220"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:609..611,aa:Met,seq:cat)
     gene            771..1709
                     /locus_tag="VJA84_00225"
     CDS             771..1709
                     /locus_tag="VJA84_00225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018048281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucuronic acid decarboxylase family
                     protein"
                     /protein_id="HLD40584.1"
                     /translation="MKKTALVTGGAGFLGSHLCQRLLEEGNRVICLDNLITGSLNNIE
                     PLKADKNFTVILHDISKPIDIKEKIHYLLHFASPASPADYLNYPIQTLKVGSLGTHNA
                     LGLAKAKGARFLLASTSEVYGDPLVHPQNEEYWGNVNCVGPRGVYDEAKRFAEAITMA
                     YHRVHKVDTAIVRIFNTYGPRMRKNDGRAIPNFISQALENKSLTVYGQGLQTRSFCYV
                     DDLVEGILRLLKCDINFPVNIGNPNEMRLIELAKAIIRFSESKSRIKYESLPVDDPKQ
                     RQPDISKARKHLKWLPKVALETGLAQTIEWFKHCQK"
     gene            1752..3194
                     /locus_tag="VJA84_00230"
     CDS             1752..3194
                     /locus_tag="VJA84_00230"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HLD40585.1"
                     /translation="MDGQTLVYTVVIVISIVAALFLFISASLSYQAKLKDGRGGFKAD
                     IVTDDSLKQIITEEISQVTGSRKYSVEIANKVSGVLSKELEKRVSDKAQELSRKYESV
                     IQEKTKNEEIAWNKYQKVADDKKETEAVIHSIAEGLVVVDSKGKVIMMNPAAEKMLGV
                     SKKDKMGRPLDEGMKDEQLVSMIRDKGETLGKEIELMSSRDETKKVLRASTAVIESED
                     GKTVGMVSVLSDITKQKELDQMKSTFVANVSHELRTPLVAMEKSVSLILSKDAGPLTE
                     TQEQFLTIAERNLKRLSLLINDLLNLSKLEAGKMEIKRRSFALENVISDSIDGLNTWA
                     KTRGIEIIRNAPAGLPEADIDPDRIIQVLTNLIGNAIKFTPSGGKVTVSAQAQDNGKY
                     LEVGVKDTGIGIAKENLSKLFDKFYQIGERVPTDISGTGIGLSIAREIVQLHGGKIWV
                     ESEKGQGAKFCFTLPVSITAGLQAAVNVSA"
     gene            3207..3605
                     /locus_tag="VJA84_00235"
     CDS             3207..3605
                     /locus_tag="VJA84_00235"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HLD40586.1"
                     /translation="MENKDITVLVTDDEDDFRQLMVFWLKSKGYSVFDANCGSRAIEL
                     VKEKNPDIIFMDLRMPEMDGPQTIGRIREFNPDVPVIIISAYLDDSKVQESSGYGISG
                     VFFKGKDFSQGLSLLETVLRTHKKLKKPPQ"
     gene            3605..4663
                     /locus_tag="VJA84_00240"
     CDS             3605..4663
                     /locus_tag="VJA84_00240"
                     /inference="COORDINATES: protein motif:HMM:NF024878.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing phosphohydrolase"
                     /protein_id="HLD40587.1"
                     /translation="MRISDILKKSNQPREEKSAQGIPRDIPLKEESPRGAPDKETEAF
                     FVSRISSVMDRVVSEEETVRLYDEALSLVGQVIREDADYRGIEALKLADTVARISQQI
                     AFGNELLLLLAFTRNSIQTNYLLCHSLNVCIYALRIGLGLNYEKKQLLELGVSAFLHD
                     LGMAKYLDLANQPRRLSDEEFKQIKNHPALGAQALADLKDFGKSAAEVCRQHHERCDG
                     SGYPGGLKGEALSDYAKIVGIADVYEAMTHKRAYRQKFLSLETVQVILDAKDRFDGRL
                     IKLLIDRVGIFPVGSLVKISSRETAQVIKINIGVPLRPVVRIVRDAEGRKPPSEKIFD
                     LSAHPTVYVKGEERLVDT"
     gene            4667..5485
                     /locus_tag="VJA84_00245"
     CDS             4667..5485
                     /locus_tag="VJA84_00245"
                     /inference="COORDINATES: protein motif:HMM:NF014606.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015159 - polysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015774 - polysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis/export family
                     protein"
                     /protein_id="HLD40588.1"
                     /translation="MKYGNLILFFSLFILASAVSARGEEDIPALIQECYKKGNEYYLA
                     GKYKEAQGQYQKALSLAAQGAPTSQTKASPQAKSANYLIGEGDTLMISVWQNNDLNQE
                     VIVRPDEKISFPLIDDVQAGGLTIPQLDAEITKRLKEFIKYPEVSIFLRSMGGKKIFV
                     LGEVYSPGVYTVTGDKNVAQAITMAGGFTSNAVANSVVLIQGGFTNPKGTRLDLNRYL
                     LGTGPKQNIMLQPDDIIFVPKKFVANMNYLINQIIGPIVKGAYDNNALRNTKSW"
     gene            5519..>5835
                     /locus_tag="VJA84_00250"
     CDS             5519..>5835
                     /locus_tag="VJA84_00250"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HLD40589.1"
                     /translation="MLDTISVIIPSYNESEIIPETLNVMLRQVSPLEEIIVVDDGSPD
                     NTSRIVQDLAKDNPKIRLIKRGGLARGLVSAIREGIDNAKGDWVFWLDADFSDTDFSL
                     RRL"
BASE COUNT         1551 a         1277 c         1585 g         1422 t
ORIGIN      
        1 aagaataaat acaaggcgat tatttcccac cgttccgggg agaccgaaga caccaccatt
       61 gcccatttgg cggtagccac caatgccggc cagatcaaga ccggctcgct ttcccgcact
      121 gaccgggtct gcaagtataa cgagctcctg cggattgagg aggagttagg caaaaaggcg
      181 gtgtatgccg ggaagttgtg gaagaaatag atgctaaaga tttttaaaca gacttctgtt
      241 ttggtgtttt tggggcttat cctgattatc tttttccccg gctacgccaa gatccaggag
      301 atgcgccata agaataggaa gctggaggcg gacatcaaaa ggctcaaggc cgagaatata
      361 gccttgagtt tagagaagga aaagctggag accgacccga attacttaga acaggtggcc
      421 cgggaaaagt taggcatagt caaaaaggga gagacggttt accgtttagt gccgcaggag
      481 taggggcaga cctgcgtgtc tgcttatcgc tgtaatggcc acccacgcgt aaaaattttc
      541 cgtgacaaat tagtttttta tgctattata atctcgcggg gtggagcagc ctggtagctc
      601 gcgaggctca taaccttgag gtcagaggtt caaatcctct ccccgcaacc aattaccccg
      661 caccttttct gtattcatgt ttttagctca aaaatctgaa tagtgaaaag gtgcggggta
      721 ttgtattaag aaaggttgat ttttcccgcc gttgtgatat cattgttttg atgaaaaaga
      781 cagccttagt gaccgggggg gcgggcttcc tggggtcgca tttgtgccag cgcctgttag
      841 aggaaggcaa tagggttatc tgcttagaca acctgattac cggaagcctt aataatattg
      901 agcccctgaa agccgataag aattttaccg ttatcctcca cgatatcagt aagcctattg
      961 atatcaaaga aaaaatccat tacctcctgc attttgcctc accagccagc cccgctgatt
     1021 atctgaatta tcctatccaa accttaaaag tgggctcctt gggcactcat aatgccctgg
     1081 gcctggctaa ggccaagggg gccaggtttt tattagcctc aacctctgaa gtttacggcg
     1141 atcctctggt ccatccccag aacgaggaat attggggcaa tgtcaactgt gtcggacccc
     1201 gtggggtcta tgacgaggcc aaacgttttg ccgaggccat tactatggcc tatcaccggg
     1261 tgcataaggt ggataccgct atcgtgcgga tttttaacac ctatgggccc cggatgcgca
     1321 agaacgacgg ccgggccata cccaatttta tctcccaggc cctggaaaat aagtctttga
     1381 ccgtctatgg ccagggcctg cagacccgct ctttttgtta tgtggatgat ttggtggaag
     1441 ggattcttcg tcttttaaaa tgcgatatta attttccggt gaatataggc aatcctaatg
     1501 agatgcgcct gattgagctg gccaaggcca ttatcaggtt ttcggaaagc aagagccgga
     1561 ttaagtacga aagcctgccg gtggatgacc ccaagcagag acagccggat atctctaagg
     1621 ccaggaaaca cctcaagtgg cttcccaagg tggccctgga aaccggctta gcccagacta
     1681 ttgagtggtt taagcattgt caaaaataat gggtctatag tctatcgacc cattattatt
     1741 ataatgtgat tatggacggc cagaccttag tttataccgt agttattgtt ataagcattg
     1801 tggcggcttt atttttattt atttcggcca gcctttccta tcaggccaag cttaaggatg
     1861 gccggggcgg gtttaaggcc gatattgtta cggacgattc cctgaagcag attataaccg
     1921 aggagatcag ccaggtaacc ggctcgcgca aatattccgt agagatagct aataaggttt
     1981 ccggggtctt aagcaaggaa ttggaaaaaa gggtttcgga taaggcccag gaattaagcc
     2041 gtaaatacga gagcgtaatc caggaaaaga ctaagaatga agagattgcc tggaataagt
     2101 atcagaaggt tgccgatgac aaaaaagaga ccgaggcggt aatccacagc atcgccgagg
     2161 gcctggtggt ggtggattct aaaggcaagg tgattatgat gaacccggcg gcggagaaga
     2221 tgctgggggt ttctaaaaag gacaagatgg gcaggccttt ggatgaaggg atgaaggacg
     2281 agcaattggt ctctatgata agggacaagg gcgaaacctt aggcaaagag atagagctga
     2341 tgagctcgcg ggatgagacc aagaaggttt taagggcgtc taccgcggtt attgagagcg
     2401 aggatggcaa gaccgtgggt atggtttcgg tcttaagcga tatcaccaaa cagaaagagc
     2461 tggatcagat gaagtctacc tttgtggcca atgtttctca tgaactgcgc acgccgctgg
     2521 tggcaatgga aaagtccgtg tccctgattt taagcaaaga tgccggcccc ctgaccgaga
     2581 cccaggagca gttcctgact attgccgagc gtaacctgaa gagattaagc ctcctgatta
     2641 atgatctgct taacctctct aagctggagg cggggaagat ggagattaaa cggcgctctt
     2701 tcgcgctgga aaatgtaatc agcgattcta ttgacggact aaacacctgg gctaagacca
     2761 gagggataga gattatcagg aatgcccccg ccggcctgcc ggaggcggat attgaccctg
     2821 accggataat ccaggtgctc actaatctta tcggcaatgc cataaagttt accccttccg
     2881 gcggtaaggt tacggtcagc gcgcaagctc aagacaatgg caagtatctg gaggtagggg
     2941 ttaaggatac aggtataggc atagccaaag agaacctgtc aaaattgttt gataaatttt
     3001 atcagatcgg ggaacgggtg cctacggata tcagcggcac cgggataggc ctgtctattg
     3061 ccagagagat tgtgcaattg cacggaggaa aaatctgggt ggaaagcgaa aagggccagg
     3121 gcgctaaatt ctgttttacc ctgccggtaa gtattaccgc cggtttgcaa gcggcggtca
     3181 atgtatcagc ataggagaag atctccatgg aaaataagga tatcacagtc ctggttaccg
     3241 acgacgagga tgacttccgg cagttgatgg ttttttggct gaagtctaaa ggctattcgg
     3301 tctttgacgc caactgcgga agccgggcca ttgagttagt caaggaaaag aacccggata
     3361 tcatttttat ggacttaagg atgccggaaa tggacggtcc gcagactatc ggcaggatcc
     3421 gggagtttaa cccggatgtg ccggtaatca tcatcagcgc ctatctggat gacagcaagg
     3481 ttcaagagtc ctccggttac ggcatctccg gggtattttt taagggcaag gatttctccc
     3541 aggggttgtc tttgctggag accgtcttaa ggacgcataa gaaactcaag aaaccgcccc
     3601 agtaatgcga atatcggata ttttaaagaa aagcaaccag ccaagggaag aaaagtccgc
     3661 gcaaggcatc ccgcgggata tccctttaaa ggaagaatct ccgcggggcg cgccggacaa
     3721 ggaaacagag gctttctttg tctcccggat ctcctcggtt atggacaggg ttgtttccga
     3781 ggaggaaacg gtcaggcttt atgatgaagc cttatcgctg gttgggcagg ttatccggga
     3841 agacgcggat taccgcggta tagaagcgct taagctcgcg gataccgtag caaggatttc
     3901 tcaacagatt gcttttggga atgaattgct gttactgctg gcctttaccc gtaattctat
     3961 tcagactaat tatctgctct gccactcttt gaatgtctgc atctatgccc tgcgcatagg
     4021 actggggctt aattatgaga agaaacagct tctggagctt ggggtatcgg cctttctcca
     4081 tgacctgggt atggctaaat acctggatct tgccaatcag ccgcgcaggt taagcgatga
     4141 ggagtttaaa cagataaaga atcatcctgc cctcggggcg caggcgctgg ccgatcttaa
     4201 ggatttcggt aaatccgcgg cagaggtttg ccgccagcac catgagcgct gcgatgggtc
     4261 aggatatccc gggggattaa agggtgaggc cttaagcgat tacgcgaaga tagtcggcat
     4321 tgccgatgtc tatgaggcaa tgacgcataa gagggcctat cgccagaaat tcctttccct
     4381 ggagacggtg caggtgatcc tggatgccaa ggacaggttt gacgggcgct taatcaaact
     4441 gcttattgac cgggtgggga tttttccggt aggcagttta gtcaagatca gcagccggga
     4501 gaccgcccag gtgatcaaga ttaacatcgg cgtcccgctt aggccggtag tcaggatcgt
     4561 ccgggatgcc gagggaagga agccgccttc agaaaagatc tttgatctta gcgcccatcc
     4621 tacggtatat gttaagggag aagaaagact tgttgatact taaaagatga aatacgggaa
     4681 tttgatatta ttttttagtc tttttatttt agcctctgct gtttctgccc ggggcgagga
     4741 agacattcct gccttgatcc aggagtgcta taagaaggga aatgagtatt atctcgcggg
     4801 caaatataaa gaggcccagg gacaatacca gaaggccctt tctttagccg ctcaaggagc
     4861 tccaacctcg cagacaaagg catcccccca ggctaagagc gctaattacc tgatagggga
     4921 gggggacacc ttgatgattt cagtgtggca gaataatgac ttaaaccaag aggtgatagt
     4981 gcgtccggac gaaaagattt cttttcccct gatagatgat gtccaggccg gggggctgac
     5041 tatcccccaa ttagacgccg agattaccaa aaggcttaag gaatttatca agtatcccga
     5101 ggtttcaatt ttcttaagga gtatgggcgg caagaagatt tttgttttgg gcgaggtcta
     5161 cagccccggg gtctacaccg taaccggcga taagaatgtg gcccaggcca ttacgatggc
     5221 cggggggttt acctctaacg ccgtagccaa cagcgtagtc ttgatacaag gcggctttac
     5281 taatcccaaa ggcacccggc tggacctgaa ccgctacctc ctgggcactg gccctaaaca
     5341 gaacataatg ttacaaccgg atgacattat ctttgtgccc aagaaattcg tggctaatat
     5401 gaattacctg atcaatcaga ttatcggccc gatagtcaaa ggcgcttatg ataacaacgc
     5461 ccttcggaat actaaatctt ggtaatttac ctcccgcctt ttccttgaat caacaataat
     5521 gttggatacc atatcagtta ttattccctc ctataatgaa agtgagatta tcccggagac
     5581 tttgaatgta atgctccgcc aggtaagtcc cttagaggaa attattgtgg ttgatgacgg
     5641 ctccccggat aatacctcgc ggatagtcca ggatttagcc aaagataacc ctaagatacg
     5701 attgattaaa cgcggaggtc tggccagggg attggtatcg gctatcaggg aagggattga
     5761 taatgccaaa ggggactggg tgttttggct ggacgctgat ttttcggaca cggattttag
     5821 ccttaggcgt ttaat
//
LOCUS       DATDUB010000013         4422 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_2180057, whole genome shotgun sequence.
ACCESSION   DATDUB010000013 DATDUB010000000
VERSION     DATDUB010000013.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 4422)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4422)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4422
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2180057"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2676)
                     /locus_tag="VJA84_00255"
     CDS             complement(<1..2676)
                     /locus_tag="VJA84_00255"
                     /inference="COORDINATES: protein motif:HMM:NF013069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HLD40590.1"
                     /translation="MRLPEFGVRFPVTNVMIFLCILVLGLVSLSKLPVDLMPEIEPPV
                     ISVITVYEGASAEDVESKVTEVIENNLAIVSNLDMLSSRSMEGLSTVRCRFKWGVNLD
                     EVSNDIRDRLEFAKRSLPDEVENPIVFKFNTSTMPILFVGVSSSDQTYPQLFHLVDKQ
                     ISDEFKRVPGVGAIQMYGGLERQINVKLDRGRLEAYNLSAEDINRRLKEENITLPAGD
                     LKAGYLDYALRVPGEFSSSDEIKNIIISNQAGRLVYLKDVALVEDSFKEETMRVRSNG
                     RLGMMLMVQKRSGANTVEVAGQLKKKIKQLEESLPGDIRLSVLLDSSEHIGQSIKDLS
                     QTVYWGGLFVILVVFFFLRQLSPSLIISLTIPFSLIIVFIFMYFLGYTINIMSLSSLA
                     IAIGMVVDNAIVVTDNAYRYREKGSNPRDAAILGTSEVGLAVSASTLTTVVVFLPMAF
                     LSGITGIMFKQLAVLVTVTLLASLFTALTFTPMLCSKLLKHIPGKNSPGFYQFSGRFF
                     ERLEEIYSRILSWSLKNKKTVIFGAIGVFVFSLLLVSKIGSEFIPEEDTGDLNLEIQL
                     PVGTRYEETLKTSNDVENIIKTDVPEALTVFSRVGYSSTSRFGAAFGSRMGSHIMTIG
                     IKLSKLKERKRSVKEIAQALRPRIQGLLGVKRINVQAGSPFSRVLFGGGKPVSIEILG
                     HNLEFTDSLAQQIRAEISGIKGITDVVVSRELGRPELQIMVDRAKAASLGLNMSAVSD
                     TLRTYFYGKTASKFRQGGDEYDILVRLRESDRMNIKDIGNIPLMSGAGKMIPLNNIAR
                     VIQKSGPVEIERQNQERIIKVEANIYRRSLGDIAKEIKEVLARINIPQDVTINLGSDI
                     EEQAKSFKELILLFLLGGLLVYMVMASLFESFLDPF"
     gene            complement(2680..3600)
                     /locus_tag="VJA84_00260"
     CDS             complement(2680..3600)
                     /locus_tag="VJA84_00260"
                     /inference="COORDINATES: protein motif:HMM:TIGR01730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HLD40591.1"
                     /translation="MKRSKKVILLIVFLHLAGLFLIKKVFVPKAEAPAKQARRIETVS
                     VRVETAERRDMDIVLSYVGGLKARNEAYVYSKVNGKFLEYLLREGDKVEKGQVIALVE
                     RDETGLKYEPAKVVSPISGVIGRTFLDQGANVVSQEAAGQASAIAIALDRDEMTVRLN
                     VPEQDIADIKDGQPAFIKVDAYPEEEFKGEVIRVSEVVDIQTRTLPVEIGIPNEKLLL
                     KSGMFARINIFAGRLSARLVIAQDALVREDSSDFVYRLEDSKARKVRVKTGMYQDSKV
                     EILEGLEEKQKVITFGHQGLKDGAEVNVVE"
     gene            complement(3597..>4422)
                     /locus_tag="VJA84_00265"
     CDS             complement(3597..>4422)
                     /locus_tag="VJA84_00265"
                     /inference="COORDINATES: protein motif:HMM:NF014385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HLD40592.1"
                     /translation="NQRVLENQFAHLEAIKEKHAKGEASESEMLKAVHSLSDARYLQE
                     ASLNQLENAKTLFKDILALEDKAEVEISGDFDYSPREIAVDSAILKALEARPEIREYA
                     AREKADAAAVEIARSGGRPSIYGTFDYYSRSTTSLTFSPGKGWQDYNAAGFTFSWPVF
                     DGWLTKAKVEQALSDLKQDRIMRDKLQADIASQVKNAYLSLKTALAGLEPRKREIELY
                     QDYLKTAEDKYKEGILSALGLDDVRLALRVSDFNRRQGLYDCLAARAELDLAMGVK"
BASE COUNT         1045 a         1304 c         1019 g         1054 t
ORIGIN      
        1 aaaagggtca aggaacgact caaagaggct ggccatcacc atatagacca ataaaccgcc
       61 taagagaaaa agcaggatca gctccttaaa ggacttggcc tgctcctcaa tatcgctgcc
      121 taagtttatg gtaacatcct gggggatgtt tatccgggcc aagacctctt ttatctcttt
      181 ggcaatgtcc cctaaagagc gccggtagat attggcctcc accttgataa tcctctcctg
      241 gttctgcctc tctatctcca ccggcccgct tttctgaatg acccgggcaa tattattcaa
      301 agggatcatc ttcccggcgc cggacatcaa ggggatattc ccgatgtcct taatattcat
      361 ccggtcggat tctcttaagc gcaccaggat atcgtattcg tccccgccct ggcgaaactt
      421 gctggcagtc ttgccataga aataggtgcg cagggtatcg ctgacagcgc tcatattcag
      481 gccaaggctg gcggccttgg ccctgtccac cataatctgt aattccggcc ggcccagctc
      541 gcgcgagact accacatcag ttatcccctt tatcccggaa atctccgccc gtatctgctg
      601 ggccaagctg tcggtaaact ccaggttatg ccccaatatc tctatggaaa ccggcttgcc
      661 cccgccaaag agcacccggg aaaaagggct cccggcctgg acattgatcc gctttacccc
      721 caggagaccc tggatcctgg gccttaaggc ctgggctatt tccttgaccg aacgcttgcg
      781 ctcttttaat ttgcttaatt tgatgccgat agtcattata tgcgagccca tccgggagcc
      841 gaaggccgct ccgaaacggg aggtggaaga atatcctacc cgggaaaaaa cagtcagggc
      901 ctccgggaca tcagtcttta ttatattttc cacatcattg gaggtcttta aggtttcttc
      961 gtaacgggtg cctaccggaa gctggatctc caggttcagg tccccggtgt cctcctcggg
     1021 gataaactca ctgcctattt tagaaaccaa taagaggctg aagacaaaaa cccctatagc
     1081 gccaaaaatt accgtcttct tattcttcag gctccagctt aaaatccggg aataaatctc
     1141 ctccagccgc tcaaagaaac ggccgctgaa ttgataaaag cctggggaat tttttcccgg
     1201 gatatgctta agcagtttgg aacagagcat cggggtaaag gtaagagcgg taaagagcga
     1261 agccaggagg gtaaccgtaa ccaacactgc caactgcttg aacataatcc cggtgatccc
     1321 gcttaaaaag gccatcggca ggaacaccac cacagtggtt aaggtagagg ccgaaacagc
     1381 caggccaacc tcggaggtcc ccaggatggc cgcgtcgcgg ggattactcc ctttttcccg
     1441 gtaacggtag gcgttatccg taaccacgat ggcattgtcc accaccatac ctatagctat
     1501 ggctaagctg gagagcgaca ttatgttgat ggtatagccc aggaaataca taaagataaa
     1561 gacgatgatc agggaaaaag gtatggtcag gctgataatc aggctgggag agagctgacg
     1621 caggaagaaa aacaccacca ggatgacaaa aagacctccc cagtaaaccg tctgggacaa
     1681 atccttgata gactggccga tatgctcgga gctgtccaag agcacggaga gccggatatc
     1741 tccgggcagg ctttcttcca gctgtttgat tttcttcttt aactgcccgg ccacctccac
     1801 ggtattggcc ccggagcgct tctggaccat cagcatcatc cctaaacggc cgttagaacg
     1861 cacccgcatc gtctcttcct tgaaggaatc ctccaccagg gccacatcct tcagataaac
     1921 cagccggccg gcctggtttg agataatgat attttttatc tcatcagagg agctgaattc
     1981 ccccggcacc cgcagggcat aatccagata tccggcctta aggtctccgg cgggcagggt
     2041 gatgttttcc tccttcagtc gccggttgat atcttcggcg gaaaggttat aggcctcaag
     2101 ccggccgcgg tccaacttca cattaatctg gcgctcaagg cctccataca tctggatcgc
     2161 gcccaccccc ggcacgcgct taaactcatc gcttatctgc ttatccacca gatgaaaaag
     2221 ctgggggtaa gtctggtcgg atgaacttac ccccacaaac aatatcggca ttgttgaggt
     2281 gttaaactta aaaactatcg ggttctccac ctcatccggc aggctccttt tggcaaactc
     2341 cagcctgtcc cggatgtcgt tagagacctc atccaaattt accccccatt taaagcggca
     2401 gcggacagta gagagcccct ccatagagcg ggaggagagc atatccaagt tagagactat
     2461 ggctaagttg ttttcaatca cctcggtgac cttgctctcc acatcctcgg cgctggcccc
     2521 ttcatagaca gtgatcaccg agatcaccgg cggctcgatc tccggcatca ggtcaaccgg
     2581 cagcttgctt aaagacacca gccccaaaac caatatgcac aggaaaatca tcacattggt
     2641 aaccgggaat cggactccga attctggcag gcgcatcttt tactccacca cattgacctc
     2701 cgcgccatcc tttaacccct gatggccgaa ggtaatcacc ttttgctttt cctctaaccc
     2761 ctctaatatc tcaaccttgc tgtcctgata catcccggtc ttgacccgga ccttgcgggc
     2821 cttggaatcc tccagccgat agacaaaatc actgctgtct tccctgacca gggcgtcttg
     2881 agcgatgacc aacctcgcgg aaagccttcc ggcaaagatg tttatcctgg caaacatccc
     2941 ggatttaagc aggagtttct cattggggat gccgatctca accggcaggg tgcgggtctg
     3001 gatatccacc acctcgctca cccggataac ctcaccctta aactcttctt caggataggc
     3061 gtcaaccttt atgaacgccg gctgcccgtc cttaatgtcc gcgatatcct gctccgggac
     3121 attcagcctg actgtcatct catccctgtc cagcgctata gcaatggcgc tggcctggcc
     3181 tgccgcctct tgagaaacca cattcgcccc ctggtccaga aatgtcctgc cgatgacccc
     3241 gctaatcggc gaaactacct tggccggttc atatttaagc ccggtctcat ccctctccac
     3301 cagggcaatc acctggcctt tttccacctt gtccccttcc cgcaggagat attccaggaa
     3361 ttttccgttg accttggaat agacataagc ctcattcctg gccttaagcc ctcccacata
     3421 agaaaggacg atatccatat cccgcctttc cgcggtctcc acccggaccg agaccgtttc
     3481 tatcctcctt gcctgcttcg cgggagcttc ggccttcggg acaaagacct ttttaatcaa
     3541 aaacaatccg gccagatgca ggaaaacaat caaaagaatc acctttttgc ttctcttcat
     3601 tttaccccca ttgccaaatc taattccgcc ctggcggcca ggcagtcata cagcccctgg
     3661 cggcgattaa aatccgaaac ccgcagggct agacggacat cgtctaatcc caatgcgctc
     3721 aatatccctt ccttatattt gtcttcggct gttttcaaat aatcctgata cagctcaatc
     3781 tccctttttc tgggctctaa tccggcgagg gcggtcttta aagacaaata ggcgtttttg
     3841 acctgactgg cgatatccgc ctgcaattta tcccgcataa tcctgtcctg ctttaaatcg
     3901 cttaaggcct gctccacctt ggccttggtc agccagccgt caaatacggg ccaggagaag
     3961 gtaaagcccg ccgcgttata atcctgccag cctttaccgg gagaaaaagt caaagaagtg
     4021 gtggaacggc tgtaataatc aaatgtcccg tagatgctgg gcctgccccc ggaacgggca
     4081 atctccaccg cggccgcgtc cgccttttcc cgggcggcgt attcgcggat ctccggcctt
     4141 gcctccaagg ccttgagtat cgcgctgtct acggcgatct ccctggggct atagtcaaaa
     4201 tccccggata tttccacttc ggctttatcc tctaaggcca ggatgtcctt aaaaagcgtc
     4261 ttggcgtttt ccaactggtt taaagatgct tcctggagat agcgggcatc ggataggcta
     4321 tggacggcct ttaacatttc agactccgag gcctcgcctt tagcgtgttt ttcctttatt
     4381 gcctccagat gggcaaactg attctccagg acgcgctgat ta
//
LOCUS       DATDUB010000014         2064 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_340538, whole genome shotgun sequence.
ACCESSION   DATDUB010000014 DATDUB010000000
VERSION     DATDUB010000014.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2064)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2064)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2064
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_340538"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..187
                     /locus_tag="VJA84_00270"
     CDS             <1..187
                     /locus_tag="VJA84_00270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40593.1"
                     /translation="CGTRPDGLVEAQTSSPSRYCPPAADIGIPENPKAALAKINIRCE
                     NHKFSYFDLKAIWKRLL"
     gene            169..>2064
                     /locus_tag="VJA84_00275"
     CDS             169..>2064
                     /locus_tag="VJA84_00275"
                     /inference="COORDINATES: protein motif:HMM:TIGR01511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042625 - ATPase-coupled ion transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase"
                     /protein_id="HLD40594.1"
                     /translation="MEKVTLNILGMHCVSCAKTVETALKKAQGIAGAQVNFALEKAYI
                     EFDQDTITSGALIGLVEKAGYKAYVADGASDREKELRDKEVRSLKIRFIVALILSSLL
                     MYVCMGHCLGLSVPKIIVENMALAQFLLATAVLICGFQFFKGGFLAVVRSRSANMDTL
                     VALGVGSAYLYSLAVSIRSWIGGSLSCGGQLYYEVAAFVLTFIMLGKYLEALTKRKTS
                     QAIRRLWSFRPDKVVVLRGQGEIEISLEELSVGEIVVIKPGGRIPVDGKVIEGSSSVD
                     ESIITGESLPVEKNIGDTVIAGSINKRGTFKFKALRVGKETTLAKIIKLVEDAQNSKA
                     PVQELADKIAAYFVPAVLLIALASFSIWFLLGKGFLFALTVFITVLIIACPCTLGLAV
                     PTAVIAATAKAAQNGIIIKDAASLQLAREIKVVAFDKTGTLTIGKPAVTDIVSYISDD
                     KEVLRLAGSLEKASEHILAEALLNSARSQGVSLAEVRNFESIPGKGVRGLIDNREALL
                     GNRRLMEDNKIDLRMAQENLSRLESDGKTVMCIAKDNQLSGLIAVRDSLKEHSRAAVA
                     KLKSMGKEVIIITGDNRRTAEAIAKELGITKVLAEVLPKDKQEEIKKLQARGLKTAFV
                     GDGINDAP"
BASE COUNT          510 a          453 c          578 g          523 t
ORIGIN      
        1 ctgcggaact cgccccgacg gtctcgtcga ggctcaaaca tcctcgccgt cccgatattg
       61 tccgcctgcg gcggacatcg ggattcccga aaatccgaaa gctgctttgg ctaaaatcaa
      121 cattcgctgc gaaaaccata agttttctta ctttgattta aaggctatat ggaaaaggtt
      181 actttaaata tcttagggat gcactgtgtc tcttgcgcca agactgttga gactgctcta
      241 aaaaaagctc aagggatagc cggggcccag gtcaattttg ccttagaaaa ggcctatatt
      301 gaatttgacc aggatacgat aacctcgggc gctttaattg gcctggttga gaaggccggc
      361 tataaggctt atgtggcgga tggggcatct gaccgggaga aggaattaag agataaagag
      421 gtgagaagcc taaaaatcag atttattgtg gccttgattt tatcctctct ccttatgtat
      481 gtttgtatgg gccattgttt aggtttaagc gtgcccaaaa ttattgtcga aaatatggct
      541 ttggcgcaat ttcttctggc caccgcggta ttgatctgcg gctttcagtt ttttaagggc
      601 ggttttctgg ctgtggttag aagccgctcg gccaatatgg ataccttggt ggccctagga
      661 gtaggcagtg cttacctcta tagcttagcg gtaagtatcc gaagctggat cggaggaagc
      721 ttatcttgcg gcgggcagtt atattatgaa gtggccgcct ttgtgctgac ctttattatg
      781 ctgggaaaat atctggaggc cttgaccaaa agaaagacct cccaggctat ccggcgctta
      841 tggagtttta ggccggataa ggttgtggtc cttcgcgggc aaggcgaaat agaaatttcc
      901 ctggaagaat tatccgtggg ggaaattgta gtgattaagc cgggagggag gattccggtt
      961 gacgggaagg tgatcgaggg ctcatccagc gtggatgagt caataattac cggcgaaagc
     1021 cttccggttg agaaaaatat cggggatacg gttattgccg gctccataaa taagcgcggg
     1081 acatttaaat ttaaggcgct gcgggtgggc aaagaaacca ccttagccaa aatcatcaag
     1141 ttggtggaag atgcccaaaa ttctaaagcc ccagtgcagg aactggcgga caaaatagcc
     1201 gcctattttg tcccggcggt tctcttgatt gccctggcct cattttctat ctggtttctc
     1261 ttaggcaagg gttttctttt tgccctgacg gtgtttatta ccgttttgat aatcgcctgt
     1321 ccctgcactt tgggcctggc tgtgcctacg gcagtcatcg ccgctaccgc caaggccgcc
     1381 caaaacggca tcatcatcaa agacgccgct tctttacaac tggcccggga gattaaggtg
     1441 gtggcctttg ataaaaccgg gaccctgacc atcggaaagc cggcagttac tgatattgtc
     1501 agttatattt ccgacgacaa ggaagtgttg agattggccg gctcgctgga gaaggcttcg
     1561 gaacatatcc tggctgaggc tttgctgaat tccgccaggt cccaaggcgt ttctttagct
     1621 gaggtgagga attttgaatc tatcccggga aaaggtgtcc gagggttgat tgacaaccgc
     1681 gaggctcttc tgggtaaccg ccggctgatg gaggataaca aaattgacct gcggatggcc
     1741 caggagaatc tatccaggtt agagagcgac ggcaagacgg tgatgtgtat agctaaggac
     1801 aatcagctta gcggcttgat cgcggtccgg gacagcttaa aagagcattc ccgggccgcg
     1861 gtggccaagc ttaaaagtat gggcaaggaa gtgattataa tcaccggaga taaccggcgc
     1921 actgccgagg ccatcgccaa agaattggga attactaagg ttttggctga ggttctgcct
     1981 aaagataaac aagaggagat taagaaactg caagcccggg gcctcaagac cgcctttgtc
     2041 ggcgacggga taaatgatgc cccg
//
LOCUS       DATDUB010000015         3924 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1178438, whole genome shotgun sequence.
ACCESSION   DATDUB010000015 DATDUB010000000
VERSION     DATDUB010000015.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3924)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3924)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3924
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1178438"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..516)
                     /locus_tag="VJA84_00280"
     CDS             complement(<1..516)
                     /locus_tag="VJA84_00280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013706967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate mutase"
                     /protein_id="HLD40595.1"
                     /translation="MKYIILVGDGMCDYPLPELNNKTPLEYAKTPNMDFLAKNGKTGL
                     SRTIPEGMSAASDVANLAIFGYDPKVYYSGRGPLEAANLGVKLKDDEVAFRCNLITAD
                     EEKLIDYSAGHISSQEAKALIEFLDRKLGSQEARFYPGVSYRHLAVIKNKGLKARCVP
                     PHDITGREFKKY"
     gene            complement(513..1214)
                     /locus_tag="VJA84_00285"
     CDS             complement(513..1214)
                     /locus_tag="VJA84_00285"
                     /inference="COORDINATES: protein motif:HMM:NF016051.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopantothenoylcysteine decarboxylase"
                     /protein_id="HLD40596.1"
                     /translation="MGIKRVLITAGPTWVAIDKVRVISNIASGETGILLAESLAREGA
                     KVTLILGPGESMSFPGLTGESMYLDSRFRGNDKNRIQNSRVKIVRFSFFEELRQALKK
                     ELKASRYDLIIHSAAVSDFKPAESIRGKIKSGQDYNLRLTPLPKIADEIRGLAPAAHL
                     VLFKLEFGIPDQELILRARKTLTASRADLIVANRIEPRYKAYILGAKRIYSRAGSKQE
                     MAEKLITALGKKVTL"
     gene            complement(1204..2259)
                     /gene="thrC"
                     /locus_tag="VJA84_00290"
     CDS             complement(1204..2259)
                     /gene="thrC"
                     /locus_tag="VJA84_00290"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020257989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004795 - threonine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009088 - threonine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HLD40597.1"
                     /translation="MEYNGIIERFRAFLPVSRKTPVVSLQEGNTPLLFSPYLSGILGK
                     GFEVHLKYEGLNPTGSFKDRGMTMAVSKAREAGSKAIICASTGNTSASAAAYAAKAGI
                     RCVVLIPEGAIALGKLAQALIHGAKVLAIKGNFDAALDLVKEITSKYPITLVNSLNPF
                     RLEGQKTAAFEICERLGGAPDYQCIPVGNAGNITAYWKGYKEYKQDGKISSLPKMLGF
                     QAAGAAPIVKGRPIKNPKTIATAIRIGNPASWRQAEAARDESAGLIEAVTDKEIVAAY
                     KLLAAKEGVFVEPASAASVAGLLKLAQRKYFRRTTKIVCILTGHGLKDPDRVIQTIKQ
                     PKVIKAELKAVLREIGY"
     gene            complement(2443..3735)
                     /locus_tag="VJA84_00295"
     CDS             complement(2443..3735)
                     /locus_tag="VJA84_00295"
                     /EC_number="1.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020258012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004412 - homoserine dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine dehydrogenase"
                     /protein_id="HLD40598.1"
                     /translation="MDKINVGLIGLGTVGEGVARILSGKPKFLERKIGAKLVLKRVCD
                     KDLRRKREFKINPSILTTDVNKILNDPEIQIVVELIGGIRPAKDFILEAFKRGKSVVT
                     ANKALLAECGEEIFREAKKANVDLYFEAAVGGGIPIIKALRESLGANHIDTLLGIING
                     TSNYILSSMALEGLSFNQALAEAQKKGYAERDPSLDIKGYDCAHKLAILALLGFGRSV
                     DLKDIYTEGIENVSLSDIEYARDFGYCVKLLAIAKNIDGKLEARVHPTLLSKEHLLSN
                     VRGVYNGIYVHGDFVGGTLFYGRGAGSRPAASSVAGDIIDVARNIKHNCVNRVPVYVP
                     DETIKGLRDISEIETRYYLRLSVVDKPGGLAGIAAILGKNNISIASVVQKERKQARIV
                     PVVMMTHDCREKDMRLALDEINRMSMIRKKTVALRVER"
BASE COUNT          894 a         1114 c          891 g         1025 t
ORIGIN      
        1 atatttctta aactccctgc cggtaatgtc gtggggcggc acacaacggg ccttcaggcc
       61 tttattcttg attaccgcca aatgccggta gcttaccccg ggataaaaac gggcctcttg
      121 cgagcctaat ttccggtcta agaattctat taaagccttg gcctcctggc tggagatatg
      181 cccggcgctg tagtcaatca gcttttcttc atccgcggta atcaggttgc agcgaaaggc
      241 gacctcgtca tctttaagct taacccccag atttgccgcc tccaaaggcc cccttcccga
      301 ataataaacc ttggggtcgt agccgaagat ggccaggtta gccacatccg atgccgcgga
      361 catcccttcg ggtatggtcc ggcttaggcc ggtcttaccg tttttagcca gaaaatccat
      421 attcggggtc ttggcgtatt ccagcggggt cttattattc agttcaggca aaggataatc
      481 gcacattccg tcgccgacca aaatgatgta tttcatagcg ttactttctt ccccagcgcg
      541 gtaatcagct tttcggccat ctcctgttta gagccggcgc gggaataaat ccttttcgcg
      601 cccaggatat aagccttata ccgcggctca attctgttag cgacgatcag gtccgcgcgg
      661 ctggcagtca aagttttcct ggcccggaga atcaactctt gatccgggat gccaaactcc
      721 agtttaaaca ataccaaatg cgccgcgggg gccaggcccc ggatttcatc ggctatttta
      781 ggcaaggggg ttaatcttaa attataatcc tggccggatt ttattttccc ccttattgat
      841 tcagccggtt taaagtccga caccgccgcc gagtgaatta taagatcata cctggatgcc
      901 ttaagctctt tttttagcgc ttgccttaat tcctcaaaaa aactgaagcg gactattttt
      961 accctgctgt tctgaattct attcttgtca ttcccgcgaa agcgggaatc cagatacata
     1021 gattccccgg tcaagccggg gaatgacata ctttctcccg gcccaaggat caaggtaacc
     1081 tttgcccctt cccgggctaa gctttcagct aataaaatgc cggtctctcc gctggctatg
     1141 ttggagatca ctctcacttt atctatagcc acccacgtcg gcccggctgt aatcaaaacc
     1201 ctcttaatac ccaatctctc gcagtaccgc ttttaattcc gctttaatga cctttggttg
     1261 ttttatagtc tggattaccc ggtccgggtc ctttaggccg tggccggtaa ggatgcagac
     1321 gattttcgtc gtccgtctga aatattttct ttgggctaat ttcaacaggc cggcgaccga
     1381 ggcggcagag gccggctcca caaagacgcc ttccttagcc gccagcaatt tataagccgc
     1441 cacaatctct ttatcggtta ccgcctctat caagcctgcg gactcatccc tggcggcttc
     1501 agcctgcctc cagctggccg gattgccgat gcggatggcc gtggcaatag tcttgggatt
     1561 ctttattggg cgccccttca caataggcgc ggcccccgcg gcctgaaaac ccagcatctt
     1621 aggcaaagaa cttatttttc cgtcttgttt atattcctta tagcccttcc aataagcggt
     1681 gatatttccg gcattgccca ccgggatgca ctggtaatcc ggagcgccgc ccagcctttc
     1741 acatatttca aaggccgcgg tcttctggcc ctccaggcga aaaggattca gggaattaac
     1801 taaggtaatg ggatacttag aggttatctc tttgactagg tccagggccg cgtcaaaatt
     1861 acccttaatc gccagcacct tggccccgtg aataagggcc tgggccagct tgcccagggc
     1921 aatcgcccct tccgggatca agactacgca gcggatcccg gccttggccg cgtaggccgc
     1981 ggctgaagcc gaggtgttgc cggtagaagc gcagataatc gcttttgatc ctgcttccct
     2041 ggccttagaa accgccatag tcatcccccg gtccttgaaa gagccggtag gattaaggcc
     2101 ttcgtatttc aggtggacct caaaaccttt gcctaaaatc ccgcttaagt atggagaaaa
     2161 caataaaggg gtattgcctt cctgaaggct gactaccggg gtcttccggg aaacaggcag
     2221 gaaagcgcga aacctttcaa tgatgccgtt atattccatc agcgctccgt caaattaatt
     2281 cttgtaagta agcggaattt gacttcgcac ttccgctatg ggggcaagcc ccccttcggc
     2341 gctcgcggac gctcgctgag caccccccaa gcgtggggga tggtctcccc cacaccccct
     2401 ttaatgcact gtccaaccta taagaattta tttgacagtg cattagcgct cgactctcaa
     2461 ggccacggtc tttttcctga tcatactcat cctgttaatc tcgtccaggg ccaagcgcat
     2521 atccttttcc cggcaatcgt gggtcatcat taccaccggc acaatcctgg cctgcttcct
     2581 ttctttctgg accaccgagg caatggagat attgttcttg cccaggatag cggcaatccc
     2641 ggccaggcct ccgggcttgt ccaccaccga aagccgcagg taatagcggg tttctatctc
     2701 gctgatatcc cgcaggcctt tgatcgtctc atccggcaca tataccggga cacggttaac
     2761 acagttatgt ttgatatttc tggccacatc aatgatgtct ccggccacag agctggccgc
     2821 gggcctgctt ccggcgcccc gaccatagaa aagggtccct cccacaaaat ccccgtgcac
     2881 ataaatgccg ttataaaccc cgcgcacatt agatagcaga tgctctttag aaagcaaggt
     2941 aggatgcacc cttgcctcaa gctttccgtc aatattctta gcgatggcca ggagcttgac
     3001 gcaataaccg aagtcccggg cgtattctat gtcgcttaaa gaaacattct ctatcccctc
     3061 ggtgtaaata tcttttaaat ccacgctccg gccaaaaccc aaaagcgcca aaatcgccag
     3121 cttgtgcgcg cagtcatagc ctttgatgtc taaagaaggg tcgcgctcgg catagccttt
     3181 tttctgggcc tcggcaaggg cctgattaaa gcttaagcct tctaaagcca tagagctcaa
     3241 gatataattg gaggtgccgt tgataatacc cagcagggtg tctatatggt ttgcccctaa
     3301 agactctcta agggccttga taataggtat gcctccgcct accgcggcct caaagtagag
     3361 atcaacattg gccttttttg cctctctaaa aatttcctcg ccgcattcgg cgagcaaggc
     3421 cttattggcg gtaaccacac tcttgccccg tttaaaggcc tctaagataa aatccttagc
     3481 cggacggatc cctccgataa gctcaaccac gatctggatt tccgggtcat tcaatatttt
     3541 attgacatca gtggtcagga tagaaggatt aatcttaaat tcccgcttgc gccttaagtc
     3601 cttgtcgcag acgcgtttta aaaccagttt ggccccgatc tttctctcta aaaacttagg
     3661 cttaccggac aagatgcggg caacaccttc gccaaccgtg cccaggccaa ttaaccctac
     3721 attaatttta tccataaccc gttaatcctg tttacccagt tacacccaga aagccctgtc
     3781 cttcacgggg tgtaactggg tttacttact ttgagtcttc aggtaatacc ctacggtatc
     3841 attaacaatg ccttcagcct tgggatctat ctccaggaac tgtatccggc tgtcataaat
     3901 caggtctttg actacttctt tgga
//
LOCUS       DATDUB010000016         2622 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_342031, whole genome shotgun sequence.
ACCESSION   DATDUB010000016 DATDUB010000000
VERSION     DATDUB010000016.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2622)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2622)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2622
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_342031"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1535)
                     /gene="lepA"
                     /locus_tag="VJA84_00300"
     CDS             complement(<1..1535)
                     /gene="lepA"
                     /locus_tag="VJA84_00300"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020258052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation elongation factor 4"
                     /protein_id="HLD40599.1"
                     /translation="MDKSLIRNFSIIAHIDHGKSTLADRILEFVGAVDKRDFKNQLLD
                     DMELERERGITIKASTARFDYPAKDGKTYILNLIDTPGHVDFTYEVSKALAACEGAIL
                     VVDATQGIEAQTVANFNLAKEQKLKVIPVINKIDLQSADIDRVKLQLIEVFGFEEEEI
                     ILASGKEGRGVEEILERIVRVVPAPLGEPDRPFKSLIFDSVFDVYRGVIVYLKVVDGS
                     IHNGDTLKMMQALRTYKIEELGVLQNLKMTKAESLSCGEVGYFISNIRSAQEVDIGDT
                     VFNVKEPIDTPLPGFRKLKPLVFCGLYPVNAADFDNLRQSIEKLRLTDASFVYETENS
                     PSFGFGFRCGFLGLLHMEIIQERLEREYGLNLILTVPSVVYQIKKRAGEVVEVDNPHK
                     FPSPQDILEAEEPYVTVTMLVPTDSMDAVHELSRNKRGIYGSTEFLGSDRVNIVFDIP
                     LSEILVDFYDRLKSCTRGYGSMDYEFIGYFPTKLVKLEILVNGEVCDAFSSLVHKEMA
                     YEKG"
     gene            complement(1535..2212)
                     /gene="cmk"
                     /locus_tag="VJA84_00305"
     CDS             complement(1535..2212)
                     /gene="cmk"
                     /locus_tag="VJA84_00305"
                     /EC_number="2.7.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014643537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004127 - cytidylate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(d)CMP kinase"
                     /protein_id="HLD40600.1"
                     /translation="MVIAIDGPAGAGKSTIARLAARKLDVLYIDTGAMYRALTLKAIR
                     LGMNCQDEPALSELMRNTRIELRNNHDGSIRVLLDDQDVSLAIRKPEVARYVSDVSKA
                     AGVRKEMLGLQRGMGLKAPCVLDGRDIGTVVFPDADRKFFLDADFKERAMRRYKELKE
                     KGEEIVLKEVEADLKNRDTIDSTRECAPLKKADDAIYVDTTHMTIEEVVEYILKYIGA
                     QEHKSTS"
     gene            complement(2229..>2622)
                     /locus_tag="VJA84_00310"
     CDS             complement(2229..>2622)
                     /locus_tag="VJA84_00310"
                     /inference="COORDINATES: protein motif:HMM:NF042869.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="prephenate dehydrogenase dimerization
                     domain-containing protein"
                     /protein_id="HLD40601.1"
                     /translation="AKTAKAAALEKIEKLWVKTGARIKIISARDHDRILAYTSHLPHL
                     VVFGLLDCLKRDYLDFAAGGLKDTTRIGLSDPLLWRDIFLTNREEVLKAVKAFKKSLA
                     RLEETIAANHPGKLVSCLESSRNKRNAF"
BASE COUNT          661 a          732 c          573 g          656 t
ORIGIN      
        1 cctttttcat aagccatctc tttatggacc aggctggaaa aggcgtcgca gacctcgccg
       61 tttaccaata tttccagttt taccagctta gtggggaaat aaccgataaa ttcataatcc
      121 atagagccgt agccgcgggt gcaagacttc agccggtcat aaaaatccac caatatctcc
      181 gaaagaggga tatcaaagac aatatttacc cggtctgaac ccagaaactc cgtggagccg
      241 taaatccctc tcttatttct ggagagctca tgcaccgcgt ccatagaatc agtaggcacc
      301 agcatggtca ctgtgacata aggctcctcg gcctccagga tatcctgggg cgaagggaac
      361 ttatggggat tatccacctc caccacctca ccagcgcgtt tcttgatctg atagaccacg
      421 ctgggcacag taaggataag gttcaggcca tattcccttt ctaagcgctc ctggattatc
      481 tccatatgca aaagccccag gaacccgcag cgaaagccaa agccaaaaga cggggaattc
      541 tcggtttcat agacaaaaga ggcgtcagta agccgcagct tttctataga ctggcgcaga
      601 ttatcaaagt ccgcggcatt caccggatac aaaccgcaaa aaaccagagg cttaagcttg
      661 cgaaaaccgg gaagcggggt atctatcggc tccttgacat taaataccgt atccccgatg
      721 tccacctcct gggcgctgcg aatattagaa ataaaataac ccacctcccc gcaggaaagg
      781 ctctcggcct tagtcatctt cagattctgc aaaaccccca actcttcaat cttataggtg
      841 cgcagggcct gcatcatctt cagggtatcc ccgttatgga tggagccgtc caccactttc
      901 agatagacaa tcaccccgcg gtagacatca aaaaccgaat caaaaatcag ggatttaaaa
      961 ggcctatccg gctcgcccag cggcgcgggg acaacacgga caatccgctc taagatttcc
     1021 tctacccccc ggccttcctt tcccgaagcc aggataatct cctcctcctc aaaaccaaag
     1081 acctcaatca gttggagctt gacccggtca atatccgcgc tttgcaggtc aatcttattg
     1141 attaccggaa tgacttttag tttctgttct ttggccagat taaaattggc cacggtctgg
     1201 gcctcaatac cctgggtagc atccaccact aatatcgccc cttcgcaggc ggccaaggcc
     1261 ttagacacct cataggtaaa atctacatgt ccgggggtat caataaggtt tagaatatag
     1321 gtcttgccgt ctttagccgg gtagtcaaac ctggcggttg aggccttaat ggttatgccc
     1381 cgctcccttt ccaactccat atcatccagg agctggttct taaaatcgcg tttatccacc
     1441 gcccccacga attccaatat cctgtcggca agggtggact taccgtggtc aatatgggcg
     1501 atgatgctga aattgcgaat cagggattta tccatcaact tgtgctcttg tgctcttgtg
     1561 ctccaatata ttttaaaata tattccacca cttcctcaat agtcatatgc gtggtatcca
     1621 catatatggc gtcatccgcc ttttttaaag gggcgcactc gcgggtggaa tcaatggtat
     1681 cccggttctt aagatcggcc tccacctctt ttaaaacaat ctcttcgcct ttttccttta
     1741 attccttata ccggcgcatc gcgcgctctt taaagtccgc gtccaagaaa aacttcctgt
     1801 ccgcgtccgg aaagaccact gtcccaatat ccctgccgtc taagacgcaa ggggccttta
     1861 agcccatccc cctttgcagg cccagcatct cttttcttac ccccgcggcc ttagagacat
     1921 ccgagacata gcgggcgact tcaggcttgc ggatggccaa agacacatct tgatcatcca
     1981 ataaaacccg gatcgagcca tcgtgattat tccttaattc aatccgggta ttacgcatca
     2041 attcgcttaa ggccggttca tcctggcaat tcatacccag ccttatagcc ttcaaggtaa
     2101 gggcccggta cattgccccg gtatcaatat aaaggacatc taatttcctg gccgccaggc
     2161 gggcaatagt agacttgccc gcccctgccg ggccatctat agcaataacc atttttttag
     2221 gatagggatt agaaggcatt gcgtttgttc cgggagcttt ccaggcagga aactaatttc
     2281 ccaggatgat ttgcggcaat cgtttcttcc aggcgcgcaa gagatttttt aaaagcctta
     2341 accgccttga gcacttcttc gcggttggtt aagaatatat ccctccataa aagcggatcg
     2401 gacaaaccta tacgggtggt atctttcagg ccgccggcgg caaagtctaa gtaatccctt
     2461 ttcaggcagt ccaaaagccc gaaaaccaca agatggggca ggtggctggt ataggccagg
     2521 atacggtcgt ggtcccgggc agagattatc tttatcctgg cgccggtttt aacccagagt
     2581 ttttctatct tttccaaagc cgccgctttc gcggttttcg cc
//
LOCUS       DATDUB010000017         2497 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1012872, whole genome shotgun sequence.
ACCESSION   DATDUB010000017 DATDUB010000000
VERSION     DATDUB010000017.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2497)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2497)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2497
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1012872"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..157)
                     /locus_tag="VJA84_00315"
     CDS             complement(<1..157)
                     /locus_tag="VJA84_00315"
                     /inference="COORDINATES: protein motif:HMM:NF013621.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylyltransferase/cytidyltransferase family
                     protein"
                     /protein_id="HLD40602.1"
                     /translation="MKIGILGGTFNPIHNGHLVLADEVRQKLKLDKVFFIPVNIPVHK
                     EEKDLLPA"
     gene            complement(154..1437)
                     /locus_tag="VJA84_00320"
     CDS             complement(154..1437)
                     /locus_tag="VJA84_00320"
                     /EC_number="1.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011025593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004350 - glutamate-5-semialdehyde
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA];
                     GO_process: GO:0006561 - proline biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-5-semialdehyde dehydrogenase"
                     /protein_id="HLD40603.1"
                     /translation="MENLIKIARRAKKASYELAVISAKVKNKALLEMAKALEAQAGSI
                     LAENKKDLTAAKGLSLALVDRLTLNEERIRSMALSLREIVSLKDPLGQVISSWTRPNG
                     LRIEKVRVPIGVTAIIYESRPNVTSDCIGLCLKSGNACILKGGKEAINTNREVYRILS
                     SAAVKNGIPAGAINFIDSTGQRAVVGLPIAQATRRGDVLSLLSLSDYIDLVIPRGGEG
                     LIRFVQDNSRIPVIKHYKGVCHVYVDRYADLQMAREIAFNAKVQRPGVCNAMETLLAH
                     KDIADRFLPEMIRRFREAKVEIRGCPKTCKIVKGIKKAKEIDWHTEYLDLILSVKVVE
                     SLDAAIEHINHYGSRHSDSIVTRNKANAIRFLNMVDSACVYANASTRFTDGYEFGFGA
                     EIGISTDKLHARGPMALEELTTYKYKVFGNGQVRK"
     gene            complement(1483..>2497)
                     /gene="proB"
                     /locus_tag="VJA84_00325"
     CDS             complement(1483..>2497)
                     /gene="proB"
                     /locus_tag="VJA84_00325"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: protein motif:HMM:TIGR01027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004349 - glutamate 5-kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006561 - proline biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HLD40604.1"
                     /translation="INYRDNTIDLGRLGGLVSQINKLWDEGKEVILVSSGAVACGMSV
                     LKLKIRPKDMPGLQAAAAIGQNELMGLYRRLLSEDNRLCAQILLTWEDFEDRKRYLNV
                     RHTIFHLLKNKVLAIINENDTVSTDEIRFGDNDRLSALVANLVGADLLVILSDVDGLY
                     RLPQKEVIRVVDKITPEIKRFCRNTDKETCVGGMSSKIEAAKIAVGAGIPVIIASGSS
                     ADALLMAASGEAVGTLFLPRADNLKAKERWIAYGVRPKGILIVDSGAKKALVENQRSL
                     LSVGITGVKGNFKKDEMVSIADAQGEEFARGRVNFSAKEIDAQKGLSLKQEVVHRDEL
                     VIL"
BASE COUNT          587 a          748 c          530 g          632 t
ORIGIN      
        1 tggcaggcag taaatccttt tcttccttat gcaccgggat atttaccggg ataaaaaaca
       61 ccttatccag cttcagcttc tgcctgacct catccgctaa aactaagtgg ccgttatgta
      121 tgggattaaa tgtcccgccc aagataccaa ttttcatttc ctcacctgac cattgccgaa
      181 taccttatac ttataggtag tcagttcctc cagggccatc gggccgcggg catgcagctt
      241 atccgtggat atgcctattt ccgcgccaaa accgaattca tagccgtcgg taaaccgggt
      301 tgaggcattg gcatagacac aggctgaatc caccatatta aggaacctga tcgcgttagc
      361 cttatttctg gtgacgatgc tgtctgaatg acgcgagccg tagtgattaa tatgctcaat
      421 tgccgcgtct aagctctcca ccaccttaac cgagaggatt aaatccagat actccgtgtg
      481 ccagtctatc tcctttgcct tcttaatgcc tttgacgatt ttacaagtct taggacagcc
      541 gcggatctcc accttggcct cgcggaatcg ccgtatcatt tcagggagga acctgtccgc
      601 gatatcttta tgcgccaaaa gcgtctccat cgcgttgcag accccgggcc gctggacctt
      661 ggcattaaag gcaatctccc gggccatctg caagtcggca tatctatcca catagacatg
      721 acagaccccc ttataatgct taatcaccgg gatccgggaa ttatcctgga caaatcggat
      781 caggccttcc ccgccccgcg ggataaccag gtcaatataa tcgcttagac ttaagagcga
      841 aaggacatcc ccgcgccggg tggcttgggc tataggaagc ccaaccacgg ccctctggcc
      901 agtggaatca ataaaattta tcgcgccggc agggattcca ttctttactg ccgcggagct
      961 taaaatccgg taaacctcac ggttggtatt tattgcctct ttcccgcctt ttaaaataca
     1021 ggcattgccg gatttcaggc acaggccgat acagtcgctg gtgacattag gccgggattc
     1081 atagatgata gccgtaaccc ctatcggaac ccgcaccttt tcaatccgca gtccattagg
     1141 cctggtccaa ctgctgatta cctgtcccag cggatccttc agagaaacaa tttcccttaa
     1201 agaaagcgcc attgagcgga tcctctcctc attcagggtc aggcggtcaa ctaaagccag
     1261 ggacaaacct ttagccgctg tcaggtcttt tttattctcc gcaaggatac tccctgcctg
     1321 ggcctccaaa gccttagcca tctccagcag ggccttattc ttaaccttag cggagataac
     1381 cgccaattca taagaggcct tcttagccct tcgcgcaatc tttattaaat tttccattgc
     1441 aaatataatt ctctccccct cccctaaccc cagggttcat tctcataata tcaccagctc
     1501 atccctatgc actacctcct gcttcaggga caggcctttc tgggcatcaa tctctttagc
     1561 cgaaaaattc accctgcccc gggcaaactc ttccccctgg gcgtccgcga tgctgaccat
     1621 ctcatccttc ttaaaattac cctttacccc cgtaatcccc accgacaaaa gacttctctg
     1681 gttttccacc aatgcctttt ttgccccgga atccacaatc agtattccct ttggcctgac
     1741 cccataggca atccaacgct ctttggcttt gagattatcc gccctgggca gaaaaagagt
     1801 gcccaccgcc tcaccgctgg ccgccattaa caaggcatcc gctgaactgc cgctggcgat
     1861 tattaccggt atgccggccc ctacggcaat ctttgccgcc tcaatcttgc tggacatccc
     1921 gcccacgcag gtttctttat ccgtattgcg gcagaaccgt tttatctccg gggtaatctt
     1981 atccaccact ctaatcacct ctttttgcgg caggcggtag aggccgtcca catccgagag
     2041 gatcactaaa agatccgccc ccactaaatt ggctaccaaa gctgaaagcc ggtcattatc
     2101 cccgaaacga atctcgtcgg tggatacggt atcgttttca ttgattatgg ccaatacttt
     2161 attcttcaga aggtgaaaaa tagtatggcg cacattaaga tatcttttac ggtcctcaaa
     2221 atcctcccag gtaagcagga tctgggcgca aaggcggtta tcttcagaaa gcaggcggcg
     2281 gtaaagcccc atcaattcat tctgccctat tgccgcggcg gcctggagcc cgggcatatc
     2341 cttgggccga atcttcagct ttaagaccga catcccgcag gccaccgcgc ccgaggaaac
     2401 caggatcact tccttgccct cgtcccaaag tttgtttatc tggctgacca ggccgccaag
     2461 gcggccaagg tcaatagtat tgtcccggta attaatc
//
LOCUS       DATDUB010000018         3582 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1682721, whole genome shotgun sequence.
ACCESSION   DATDUB010000018 DATDUB010000000
VERSION     DATDUB010000018.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3582)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3582)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3582
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1682721"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..563)
                     /locus_tag="VJA84_00330"
     CDS             complement(<1..563)
                     /locus_tag="VJA84_00330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020588549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SPFH domain-containing protein"
                     /protein_id="HLD40605.1"
                     /translation="MARNDFDPGSAEKWFNTFTAAFRKVLSMGFLPIVIVMAALILLR
                     MFFVYIGPNEYGIKQVNIGLKTGIHSEVYPTGLHFLVPFGFEIMHRFPRELQVFELTN
                     SSETASSGARIEKPAHIQTSDGFFVDVDVSILYHIVDPYKVITTIGPGRLYEDNGIIP
                     KVEPKLKEALGEMTTEEFYNSPLRVEKS"
     gene            complement(791..2083)
                     /gene="purB"
                     /locus_tag="VJA84_00335"
     CDS             complement(791..2083)
                     /gene="purB"
                     /locus_tag="VJA84_00335"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003544065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004018 - N6-(1,2-dicarboxyethyl)AMP
                     AMP-lyase (fumarate-forming) activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HLD40606.1"
                     /translation="MIPRYSLPKMSAVWQDEFKFQKFLDIEILACEAHSKLKKIPKDA
                     AVKIRQRARFDQRRIDQLEKKTQHDVIAFVNCVGESLGPYAKYLHIGLTSSDLLDTAL
                     GLQAKEAGEILLEDLEVLVEVLAKKARKYKDMVCIGRTHGIHAEPTTFGLKLAWMYDE
                     TKRNIERLKRAKEEISVGKISGAVGTYSNIDPFVEEYVCRKIGLRPARISTQIISRDI
                     HAQFINTLAVIGASLEKFATEIRHLQRTEVLEVEEPFGKGQKGSSAMPHKRNPVICER
                     ICGLSRILRTNALAALENVSLWHERDISHSSVERVIFPDSTIALDYMIYKFIEVVEGM
                     TVYPGNMLENLSRTNGLIFSQRLLLVLMEKGLARSSAYDLVQALAMKSWKERSDFKAI
                     VLADNGVPKHLNRKEIESCFELDYYLRNIEVIFSRLSL"
     gene            complement(2190..2263)
                     /locus_tag="VJA84_00340"
     tRNA            complement(2190..2263)
                     /locus_tag="VJA84_00340"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2227..2229),aa:Arg,seq:tcg)
     gene            complement(2273..2983)
                     /locus_tag="VJA84_00345"
     CDS             complement(2273..2983)
                     /locus_tag="VJA84_00345"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HLD40607.1"
                     /translation="MRYIYGPVRSRRLGLSLGVSLTPHKSCSFDCVYCQLGKTTLLTQ
                     ERKDYINTEEILSELRGFLGNNIQPCDYISLSGYGEPLLNAGIQKMIRGIKGLTAIPV
                     VLITNASLLIEPAARQDVLEADLLVPSLDAVTQDVFEKIDRPAPGIKIEDILNGLIAL
                     RGEFKGKIYLEIMLVKDINDSLVYAAKFKEAIARINPDKIQLNSPARSTTEAWVRPTG
                     KERLLEIKDILGSRCEII"
     gene            complement(3041..3355)
                     /locus_tag="VJA84_00350"
     CDS             complement(3041..3355)
                     /locus_tag="VJA84_00350"
                     /inference="COORDINATES: protein motif:HMM:NF027875.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen-binding domain-containing protein"
                     /protein_id="HLD40608.1"
                     /translation="MARKVTLGKKLMSRKAAESGKEVLLEYTNPQAKKVTVAGTFNSW
                     DANSLLAKKDRKGNWTVKVALNPGRYEYKFVVDGSWITDPHCRENISNSLGSANSVLV
                     IK"
BASE COUNT          936 a          946 c          747 g          953 t
ORIGIN      
        1 gacttctcca cccgcaaggg gctgttatag aactcctcgg tagtcatctc gcccagggcc
       61 tccttgagtt taggctcaac cttggggata atcccgttat cctcatacaa tcttcccggg
      121 ccgatagtgg tgatcacctt atagggatca actatatgat agaggatgct gacatccaca
      181 tccacgaaga atccgtctga agtctggatg tgggcgggct tctcaatcct ggccccgctg
      241 gaggcggttt ccgaggaatt ggtcagctca aagacctgga gctcccgggg gaagcggtgc
      301 ataatctcaa agccgaaagg aacgagaaaa tgcaggccgg tgggataaac ctcgctgtgg
      361 atacctgttt tcaggccgat attcacctgt tttatgccgt attcgttggg cccgatatag
      421 acaaaaaaca tccttagcaa tatcagggcc gccataacaa taactatagg caaaaatccc
      481 atagacaaaa ccttcctgaa agcggcagta aaggtattaa accatttttc cgccgaacca
      541 gggtcaaaat cattccgcgc catttagcac ctccttaatg agcagacact ttatggaacc
      601 gtcgatttac cgcaggtgaa cataaagtgt aggccgtaag gccgtctgcg aattaactcc
      661 accgagcgag gcaaaattat cgaagaaaat tttgcctcag tttgcgaggc ggagcaatca
      721 tttctccttg ctaaagcccc aaccgctttc ccgcccatcg tttatcaaaa ggcgggatcc
      781 cgcccgttct ctaaagtgaa agacgggaaa atattacctc aatattgcgc agatagtaat
      841 ccagttcaaa gcaggactca atctctttgc ggtttaaatg cttaggaaca ccgttatccg
      901 ccaatactat ggccttaaaa tccgaccttt ccttccagct tttcattgcc aaggcctgca
      961 ccaagtcata ggccgagctt cgcgccaggc ctttctccat caaaaccaga agcaatctct
     1021 gtgaaaaaat caaaccgtta gtgcggctaa gattctccag catgttcccg ggataaaccg
     1081 tcattccctc aacaacctca ataaacttat aaatcatata atccagggcg attgtggaat
     1141 ccggaaaaat caccctttca acggaagaat gactgatatc ccgctcatgc cagagactga
     1201 cattctctaa ggccgccaac gcgttcgtcc tcaagatccg gcttaggccg cagatacgct
     1261 cgcagatgac cggattgcgt ttatgcggca ttgccgaaga acctttctgg cctttgccaa
     1321 aaggctcctc cacctctaaa acttcagtgc gctggagatg gcgaatctcc gtggcgaatt
     1381 tctctaagga agcccctatt accgccaggg tattgataaa ctgggcgtga atatcccggg
     1441 agataatctg ggtggaaatc ctggccggcc ttaggcctat ttttctgcag acatattctt
     1501 ccacaaaggg gtcaatattg gaatatgttc ccaccgcgcc tgaaatcttc ccaactgaaa
     1561 tctcctcttt tgcccttttt aacctttcaa tattgcgctt agtctcatca tacatccaag
     1621 ccaattttaa cccaaatgta gtcggttcag cgtgtatccc gtgggtgcgg cctatgcaaa
     1681 ccatatcctt gtatttacgg gcctttttgg ccaatacctc aaccaaaacc tctaaatcct
     1741 caagcaggat ttctcccgcc tctttggcct gtaagcctaa agccgtatct aagaggtcgc
     1801 ttgaggtcag gccgatatgc agatatttgg catatggccc caggctttcc cccacgcagt
     1861 tgacaaaggc aatcacatca tgctgggtct ttttctccag ctggtctata cgccgctggt
     1921 caaacctggc cctttggcgg attttgaccg ccgcgtcttt agggatcttc ttaagtttgg
     1981 aatgggcctc acaggccagg atttctatat ctaagaactt ctgaaattta aattcatcct
     2041 gccagacggc agacatttta ggcaagctgt agcgcggaat cataagcatt ctcctctctc
     2101 ttttaggaaa ctatactata ccaaacttta accataacgt caaacaaaaa gccctctctc
     2161 ctacaagggc ttttttcgtt ctgttttacc gcgcccagca gggattgaac ctgcaacatt
     2221 cagttccgaa gactgacgct ctatccaatt gagctatggg cgcacattca actcatataa
     2281 tttcacacct tgaccccaaa atatccttta tctccagcaa cctctctttt cccgtaggcc
     2341 ggacccaggc ttcagtagtg gagcgcgccg gagaattaag ctggatcttg tccggattta
     2401 tcctggctat ggcctctttg aatttagcgg cgtagaccag actgtcgtta atgtctttta
     2461 ccagcattat ttccaaatat atcttcccct taaactcacc tcgcaaggca atcaatccgt
     2521 ttaaaatatc ctctatcttt attccggggg ccggacggtc tatcttctca aagacatcct
     2581 gggttaccgc gtctaaggaa gggaccaata aatccgcctc caggacatcc tggcgcgccg
     2641 cgggctcaat caacaaagag gcattagtta tcaggacaac cggtatggcg gtaaggccct
     2701 taatcccccg gatcattttc tgaatcccgg cattaagaag cggctccccg tatccggaaa
     2761 ggctgatata atcgcaaggc tgaatattgt ttcccaggaa cccccttaat tcagagagta
     2821 tctcttccgt atttatataa tcctttcgct cttgggtcag aagggtagtc ttgcccaact
     2881 ggcaatagac gcagtcaaaa gaacagctct tatgcggggt aaggctgacg cctaatgata
     2941 atcctaatct ccgggatcta accggcccgt aaatatagcg cataagagaa agaaaaaggg
     3001 gtcagagtaa aaatgactct gacccctttt ttcctatata ttattttatc accaataccg
     3061 aattggcgct gcctaagctg ttagaaatat tctcccggca atggggatcg gtaatccagg
     3121 agccgtcaac cacaaattta tactcgtatc ttccgggatt aagggccacc ttcacggtcc
     3181 agtttccttt gcggtccttt ttagctaaaa gagaattggc atcccagcta ttgaatgtcc
     3241 cggcgacagt taccttcttg gcctggggat tagtatattc taaaagcacc tctttcccgg
     3301 attcagccgc tttccgggac atcaatttct ttcctaaagt tacttttctg gccatagcca
     3361 cctccagatt gttcaactgt tcaattcacc agctcggttg ccacaacaat aatattatca
     3421 acaatttgtt tcttaacttt aatcattgct gtcctaatta gcgttattgc gagcgaagcg
     3481 aagcaatctc ttgcgacggg attgcttcgg cacttcgtgc ctcgcaatga cactttaaaa
     3541 atcgaatctc gaaatagtgt ttccgtcaga gacaatgtca ta
//
LOCUS       DATDUB010000019         5271 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1682772, whole genome shotgun sequence.
ACCESSION   DATDUB010000019 DATDUB010000000
VERSION     DATDUB010000019.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 5271)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5271)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5271
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1682772"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            181..843
                     /gene="nth"
                     /locus_tag="VJA84_00355"
     CDS             181..843
                     /gene="nth"
                     /locus_tag="VJA84_00355"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010942096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0140078 - class I DNA-(apurinic or
                     apyrimidinic site) endonuclease activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HLD40609.1"
                     /translation="MSKCDIETVIRILRREARKFKVPIVSRIAESESAQKPFLVLISC
                     LLSLRTKDQTTAAASERLFNLAGSPREILSLSVRQIEKAIYPAGFYRTKAKRIKGICR
                     VLIDKFSSRVPEGLEDLLTLKGVGRKTANLVLTEGFGKLGVCVDTHVHRITNRLGFCR
                     TNSPEETEACLRNRLPKRYWIEYNKLLVAWGQNICKPVSPLCWTCVIEKYCRKIGVIK
                     HR"
     gene            840..1463
                     /locus_tag="VJA84_00360"
     CDS             840..1463
                     /locus_tag="VJA84_00360"
                     /inference="COORDINATES: protein motif:HMM:NF003995.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-sensing transcriptional repressor Rex"
                     /protein_id="HLD40610.1"
                     /translation="MRKPSRDTISRLSLCLRILQELSKARKSNTISSGDLARELGISS
                     DQLRRDLWYFGQFGRRGVGYSVESLKNKISEILGLHKSWKVCICGMGNLGSALLAYKG
                     FKEQRLDITACFDNDPKKAYKKKGNIPIYPLEDMKKVIKSTNIEIAIIATPTAAAQGV
                     LEKLVSCDIKAVLNFAPVKLTIPPGVKLRNVDLSTELFNLTYFLSQA"
     gene            1644..2639
                     /locus_tag="VJA84_00365"
     CDS             1644..2639
                     /locus_tag="VJA84_00365"
                     /inference="COORDINATES: protein motif:HMM:NF019121.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HLD40611.1"
                     /translation="MKKIIGLTYDLKTDYKFKDNDPPDANAEFDHPLTIDLIARSIES
                     LGHKVIKIGNVRNLLKKIDSLKVDIVFNISEGSFGRNRESQVPIILEMMNVPFVGSDG
                     LTLGLSLDKAMTKKVLISEGIPTPKFFETGDHTDNIAKIKNLKFPLIVKPAYEGSSKG
                     LSDKSKVEDIGELRRQIEYIVKTYRQSALVEEFVCGSEYTVAVIGNSPPEVLSPVQIR
                     IDGKGRLGDKFYTFARIKSSRLEYVCSEKMDKDLKEKLMSLALRTYKALDCRDFGRVD
                     FRVDEDNNPYVLEINPLPSLSSEDVFMCLANHLGVSYSELIRRILDAAFLRYGLN"
     gene            2739..3788
                     /locus_tag="VJA84_00370"
     CDS             2739..3788
                     /locus_tag="VJA84_00370"
                     /inference="COORDINATES: protein motif:HMM:NF019121.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HLD40612.1"
                     /translation="MKVALCCSVKKKESDKPPDYFSEFDSEETVFSIASAIKGLGHDV
                     VLAEANDRQNIIDFFHNNSVDIVFNIAEGANSRFRESEVPALLDFLGIPYTGSNSFSL
                     ALALNKAMSKRIFRCEGIPTPEFQVFNSIQAPLNPKLKFPLIVKPNFEGSGKGISSAS
                     VVRNKDELYRQIEKTLSGYKQEALVEEFIEGKELTVGVISNGKTMVLPILEIDFSTCK
                     ESGEYFYSWKMKEFQGNKEMGCVPSFFCPGRLSDEVTALVKETALKAHKALGCLDMSR
                     TDIRLSQDNVPYVLEVNPLPGLDPKESNFPKIVKAAGIEYKDLIKSILESAIERYGLK
                     NSRERFKTVPYLKEV"
     gene            3790..4983
                     /locus_tag="VJA84_00375"
     CDS             3790..4983
                     /locus_tag="VJA84_00375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014062567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="KamA family radical SAM protein"
                     /protein_id="HLD40613.1"
                     /translation="MDTVAILTDKLKYQLALPFLSNNYLTKRTGIDYHDIELFKDVNP
                     LDWEDWRWQMRNRIRTKEALAKVINLTKEEEGGIKKSSGKLGLAITPHLSTLMDPNDP
                     NCPIRRQFVSLSQEFQVSPHEMSDPCAEDRDSPVPGLVHRYPDRVLLLATESCAAYCR
                     HCTRRRLVGDKHAVVAPAKFEPAYEYIRANRKIRDVLISGGDPFMLENDNLEEILKNI
                     RAISHVEFLRIGTRIPVALPQRISEDFVRMLKKYAPVWISIHFNHPKEINKRAKQACD
                     MLADNGFPLGSQSVLLKGINDKPSVMRRLMQELLQIRVRQYYIYQCDPVKGTAHFRTP
                     VSAGINIVEKLRGHTSGYAVPTYVIDGPGGGGKIPVSPSYLLSQAKGKYVLRNYRGKI
                     YTYIE"
BASE COUNT         1437 a         1187 c         1348 g         1299 t
ORIGIN      
        1 caaaacacga tactttattt gagtcggtaa gacagcaggg gatatataaa tacatcgcga
       61 aaaaatcaaa ggctgcgctc ttaaaatgcg acgcggaaca caatctattt ttatccgcgt
      121 atatcaagcc cgtgtttgaa gcgataaaag aatacgcgca aaagctgcga taataataat
      181 atgtccaaat gcgatattga aacggttatc aggattttaa ggagagaggc ccggaagttt
      241 aaggtcccta ttgtcagccg gatagcggaa agcgaaagcg cccaaaagcc gtttttggtc
      301 ttgatttcct gcttgttgtc tctgcgcacc aaggaccaga ctactgccgc cgcgtcagag
      361 aggcttttta atttagccgg gagcccgcgg gagatattga gcctttccgt ccgtcagatt
      421 gaaaaggcga tatatccggc aggcttttac cgcactaaag ccaaaaggat caaagggatt
      481 tgccgggtat tgatagataa attttcttcc cgggtgccgg aggggctgga ggatttattg
      541 accctgaaag gggtgggccg caagaccgcg aacctggttt tgaccgaagg tttcggcaaa
      601 ttaggggtgt gcgtggatac ccatgtgcac cggattacta accggctggg attttgccgg
      661 accaattcgc ccgaagaaac cgaggcctgc ctaagaaata ggttgccaaa aagatactgg
      721 atagaatata ataagctgtt agttgcctgg ggacagaata tttgtaagcc ggtatcgcct
      781 ttatgctgga cttgcgtgat tgaaaaatat tgccgcaaaa ttggagtaat caaacataga
      841 tgagaaagcc ttcaagggat acgatcagcc gcctgtcctt gtgcttaagg atattgcagg
      901 agctttccaa ggcccggaaa agcaatacca tttcctccgg ggacctggcc cgggaattgg
      961 ggatcagctc cgaccagcta aggcgcgacc tctggtattt cgggcagttc ggccggcggg
     1021 gggtgggcta ttccgtggaa agcctgaaga ataagatcag cgaaatctta ggcttacata
     1081 agagctggaa ggtatgcatc tgcgggatgg ggaatttagg ctccgcgctt ttggcatata
     1141 aaggctttaa ggaacagcgc ctggatatta ccgcttgttt tgacaatgac ccgaaaaagg
     1201 cgtataagaa aaaaggaaac atccccatat atccgctgga ggatatgaaa aaggtcatca
     1261 agtctacgaa tatagaaata gccattatcg ccactcccac ggccgcggcc caaggtgttt
     1321 tggagaagct ggtttcctgc gatatcaagg ccgtgcttaa tttcgcgccg gttaaattaa
     1381 ccattccccc gggagtcaaa ctgcgcaatg tggatctttc caccgagctt tttaatctta
     1441 cctattttct ttcgcaggca taaaatattg gcagcagatt tttcttgaca aaccgaatat
     1501 attgtgataa aaaaagcata agcacacaac atatagataa taaaaagaga gggaaatttt
     1561 ccaaaattga agataaaaga ctgtttaagg agacacaaag gattaaggtg tctccttttt
     1621 ttgatgcgct ctcaagacga aaaatgaaga agataatcgg attaacctac gatttaaaga
     1681 cagattacaa gtttaaagac aacgacccgc cggatgccaa tgccgagttt gaccatcctc
     1741 ttaccattga cttgatcgcc agatcaatag aatctttagg gcataaggtc attaagatag
     1801 gcaatgtccg caacctgctg aagaagatag acagcctgaa ggtggatatc gtctttaata
     1861 tttccgaagg cagtttcggc cgcaaccggg agagccaggt gccgattatc ctggagatga
     1921 tgaatgtccc ttttgtgggt tctgacgggc ttaccctggg attgagcttg gacaaggcaa
     1981 tgaccaagaa ggtgcttatc tctgaaggca tccccacccc gaagttcttt gagacgggcg
     2041 accacacgga taatatcgcc aaaatcaaaa acctgaagtt ccctttgatc gttaaacctg
     2101 cctatgaagg ctcttccaag ggcttgagcg acaaatccaa ggtggaagat atcggggaat
     2161 taaggcggca gatagagtat atcgtcaaga cctacaggca gtcggctttg gtggaggagt
     2221 ttgtctgcgg cagtgaatat acggtggcgg tgatcggcaa ttctccgccg gaggtcttgt
     2281 ccccggtgca gatccggatt gacggcaaag gcaggctggg ggacaagttt tatacctttg
     2341 cccggatcaa gagcagccgc ctggaatatg tctgttcgga aaagatggac aaggatttaa
     2401 aagagaagct tatgtctttg gccttacgaa catataaggc cctggattgc cgggatttcg
     2461 gcagggtgga tttccgggtg gatgaggata ataacccgta tgtcctggaa atcaatcccc
     2521 tgcccagcct ctccagcgaa gatgtcttta tgtgcctggc caatcatttg ggggtttctt
     2581 attcggaatt gatccgcagg atcctggatg ccgccttttt aagatacggc ctaaactaga
     2641 aattaaaatt aaccccgcac cttattataa attcaatttt ttaggaataa aggcatgaat
     2701 acaaatattg tgttgatgaa taagaaagaa ggtgcggggt gaaagtagcg ctgtgttgca
     2761 gcgtaaagaa gaaagagtcc gacaaacctc ccgattactt ctcggaattt gattccgagg
     2821 agaccgtctt cagcattgcc tcggccatca agggtcttgg tcacgatgtg gttttagccg
     2881 aggccaatga ccgtcagaat atcattgatt ttttccataa taattccgta gatatcgtct
     2941 ttaatatcgc cgaaggcgcg aattcccgtt tccgggagtc cgaggttccc gccctattgg
     3001 atttcttagg cattccttat accggctcaa attcgttttc cctggccctg gccctgaaca
     3061 aggcaatgtc caagcgcatc ttcaggtgcg aagggattcc taccccggaa ttccaggtct
     3121 ttaattcaat ccaggctccg cttaacccca aacttaagtt tcccctgata gtcaagccga
     3181 attttgaagg ctcgggcaag ggcatcagct ccgccagcgt agtcagaaac aaagatgaac
     3241 tttaccggca gatagaaaag accctttccg gctataaaca ggaggccctg gtggaggagt
     3301 ttattgaggg caaggagttg accgtagggg tgatttctaa cggtaaaaca atggtcctgc
     3361 cgatactgga gattgatttt tcaacctgca aggaaagcgg ggagtatttt tattcctgga
     3421 agatgaagga gttccagggc aacaaggaaa tgggctgtgt cccgtctttc ttctgcccgg
     3481 ggcgcttgag cgatgaggtt accgccttgg taaaggaaac cgccctgaag gcccacaagg
     3541 ccctggggtg cttggatatg tcgcgcacgg acatccgctt gagccaggac aatgtcccgt
     3601 atgttttgga ggtaaatccc ctgcccgggc tggaccccaa agaatccaat tttcccaaga
     3661 tcgtcaaggc cgcggggatt gaatataaag atctgatcaa atcaatttta gagagcgcta
     3721 tagaaagata cggtttaaaa aatagtaggg aacggtttaa aaccgttccc tacctcaagg
     3781 aggtgtaaat tggatactgt tgctatttta accgacaaac taaagtatca attagccctg
     3841 ccgtttttgt ccaataacta tcttactaag cgcacaggga tagattacca cgatattgag
     3901 ctgtttaagg atgtcaatcc tttagactgg gaggattggc gttggcagat gcgtaaccgt
     3961 atccggacca aagaggccct ggccaaggtc atcaacctga ccaaggaaga agagggcggg
     4021 attaagaaat caagcggtaa gctgggcctg gccattaccc cgcacttgag tacgcttatg
     4081 gatcccaatg atcccaattg ccctatccgc cggcagtttg tttccctgtc ccaggaattc
     4141 caggtctcac cgcatgagat gtccgaccct tgcgccgagg acagggattc ccctgtgccg
     4201 ggcctggtgc accgctatcc ggaccgggtc ctgcttttgg ctaccgaaag ctgcgccgcc
     4261 tattgccgcc actgcacccg caggagactg gtgggcgata agcacgcggt agtggcccct
     4321 gctaagtttg agccggccta tgagtatatc cgcgctaacc gcaagatccg ggatgtgctt
     4381 atctccggag gcgatccctt tatgcttgag aatgataacc tggaggagat tttaaagaat
     4441 atccgggcca tttcccatgt ggagttcctg cgcatcggca cccgcatccc ggtagccttg
     4501 ccgcaaagga taagtgagga ttttgtccgg atgcttaaga aatacgctcc cgtatggata
     4561 agcatacatt ttaaccaccc taaggagata aacaagcgcg ccaaacaggc ctgcgatatg
     4621 ctggcggata acggctttcc tttaggcagt cagagcgtgc ttttaaaagg gattaacgat
     4681 aagccttcgg tgatgcgcag gctgatgcag gagcttctgc aaattcgggt caggcagtat
     4741 tatatttacc agtgcgatcc ggtaaagggc acggctcact tccgcacccc ggtgtccgcg
     4801 gggataaata ttgtggaaaa actgcgcgga catacctccg gttacgcggt gcctacctat
     4861 gtcattgacg gccccggcgg cggaggaaag atcccggtct cacccagcta cctgctttcc
     4921 caggccaaag gcaaatatgt cctacgcaat taccggggca agatttatac ctacatagag
     4981 taaagagtta taaaaagaca ggataaatcc taaattcaaa actctaaact ctaaataaaa
     5041 tccaaactca aattctccaa atccaaggat tgtcttgggt tttgagtttt taactttggg
     5101 tttgtttagg atttagggtt taggatttat atcattgctg tcctaattag cgtcattgcg
     5161 agcgaagcga agcaatctct tgcggcggga ttgcttcggc acttcgtgcc tcgcaatgac
     5221 actttaaaaa tcgaatctcg aaatagtgtt tccgtcagag acaatgtcat a
//
LOCUS       DATDUB010000020         2406 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1850051, whole genome shotgun sequence.
ACCESSION   DATDUB010000020 DATDUB010000000
VERSION     DATDUB010000020.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2406)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2406)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2406
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1850051"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..203)
                     /locus_tag="VJA84_00380"
     CDS             complement(<1..203)
                     /locus_tag="VJA84_00380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40614.1"
                     /translation="MKKSKAYGLIVPRFEDVLHSFYASEIIKGVSLSASHLKADVLIH
                     ITERLEHEDWLNWPILNSNYLNGV"
     gene            complement(352..1167)
                     /locus_tag="VJA84_00385"
     CDS             complement(352..1167)
                     /locus_tag="VJA84_00385"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HLD40615.1"
                     /translation="MESIRAYLKDLQAIPLLKPEEELALAKRVRKGEEEARETMIRSN
                     LRMVVSIAKRYTYFGLPLMDLIEEGNMGLMRAVDKFNHRKGFRFSTYASWWIRQAIGR
                     AISDQSRMVRLPVYISEIISKWKRTNESLTQKLGRSPTDGELSKNMDVSASRLKQIGS
                     FSTTTSSLDAPVNENGEEKVKDMLEDLNAASPEDGVSRIFDRELVASFLKHVNPRERR
                     VLDLRFGLNAGKTNTLAEVAKKLKVSRERIRQIENAALKKLRKLAAAQEKELG"
     gene            complement(1169..>2406)
                     /locus_tag="VJA84_00390"
     CDS             complement(1169..>2406)
                     /locus_tag="VJA84_00390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014856500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016772 - transferase activity,
                     transferring phosphorus-containing groups [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="putative PEP-binding protein"
                     /protein_id="HLD40616.1"
                     /translation="VGCGGLHIDSRNKTITAGDKIIKEGDWITLNGTKGNVYLGQLKM
                     MDASEENKLLIEFLKLCDSFRRLKVRTNADTPEDARKARFFGAEGIGLFRTEHMFYGK
                     GSEEALFKLRKMIISKTKEERKQALDELFPYVKSDIKGTLEAMQGFPVTVRLLDPPLH
                     EFIPREEKQQTELSLALGINLEEFKKRGLALHENNPMMGHRGVRLGITYPEVTEMQVR
                     AIFEAAAELLKAGIKTEPEIMVPVVCAVKELTDQFELAKKVYQEVLKKYNLKKMPYML
                     GTMIEIPRASLIADKLAEVAEFFSFGTNDLTQMGFGFSRDDIGGFLPDYLNKGILKDD
                     PFQTIDQEGIGQLIEIGIQRGRKTRKDLKIGICGEHGGEAKSVEFCHKTGMNYVSCSP
                     FRVPIARLAAAQAVLKDKK"
BASE COUNT          587 a          651 c          501 g          667 t
ORIGIN      
        1 accccgttta agtagtttga attcaatatc ggccaattca gccaatcctc gtgctccagg
       61 cgctcggtga tatggataag cacatccgcc ttcaggtggc ttgccgagag gctgacgccc
      121 ttaataattt ccgaggcgta aaaagaatgc aggacatctt caaaacgggg gacaatcaaa
      181 ccataggcct ttgatttctt caccttaaaa ttactccttc ttaatttaaa attcaaaagt
      241 caaaattaca attaaaaact aaaaaaccat cctttagatt aatatgcttt ctgccaatat
      301 ctatatgcct tgaatcgcaa ttttgcgttt tgaattttaa gttttaaatt tttatcctaa
      361 ctccttttct tgggccgcgg ctaatttgcg cagttttttt aaagccgcgt tttctatctg
      421 ccttattctc tcccgggaaa ccttcagctt tttggccact tcagccaggg tattggtctt
      481 acccgcgttt aaaccgaaac gcaggtccag cacccggcgc tccctggggt ttacatgctt
      541 aaggaaactc gcgaccagct cccggtcaaa aatcctggaa accccgtctt ccggggaggc
      601 ggcatttaag tcctcaagca tatccttgac cttctcttcg ccattttcat taaccggggc
      661 atccagcgaa gaagtagtgg ttgaaaaaga accgatctgt ttcaacctgg aggccgaaac
      721 atccatattc ttagataact ccccgtcggt aggagaacgg cctaatttct gggtaaggct
      781 ttcattagtt cttttccatt tggagataat ctcgctaata tataccggaa ggcgcaccat
      841 cctggactga tcggaaatgg cccggccgat tgcctggcgg atccaccagg aggcataggt
      901 ggaaaaacgg aatcctttgc ggtgattaaa cttgtccact gcccgcatca accccatatt
      961 cccttcctca attaaatcca ttaaaggcag gccgaaatag gtgtaacgct tggcaatact
     1021 caccaccata cgcagattag agcggatcat cgtctcccgg gcttcctctt cgcccttacg
     1081 cacccgctta gccaaagcca gttcttcttc cggcttgagc aaggggatag cctggagatc
     1141 ctttagatat gccctgattg attccacttt attttttatc ttttaaaaca gcttgggccg
     1201 cggccagccg ggcaatcggc accctaaaag gcgaacagga aacataattc atccctgtct
     1261 tatggcaaaa ctccaccgat ttagcctcgc cgccgtgctc gccgcagata cctatcttca
     1321 aatccttacg ggtttttcgg cctctttgaa ttcctatctc aatcaactgc cctattcctt
     1381 cctggtcaat ggtctggaag gggtcatcct tgagtattcc tttattcaga taatccggca
     1441 ggaatcctcc gatgtcatcc cgggaaaaac caaagcccat ctgggtcagg tcattggtgc
     1501 cgaaggagaa aaactcggcc acctcggcca acttatccgc gatcaaacta gcccggggaa
     1561 tctcaatcat tgtccccagc atatagggca tctttttcag gttgtatttc ttcaacactt
     1621 cctgataaac ctttttggcc aactcaaact ggtcggtcaa ttccttgacc gcgcagacta
     1681 ccggaaccat aatttccggt tcggtcttga tcccggcctt aagcaattcc gcggcggcct
     1741 caaaaatagc ccgcacctgc atctcggtta cctcgggata agtgattccc aggcgcaccc
     1801 cgcgatggcc catcatcgga ttgttttcat gcagggctag gccgcgtttt ttaaattctt
     1861 ccaggtttat ccctaacgcc agggataatt cagtctgttg tttttcctct ctgggaataa
     1921 attcatgcag aggagggtcc agaaggcgca cggttaccgg gaacccttgc atcgcctcta
     1981 atgtcccctt gatatcggat ttcacataag gaaaaagctc atccagggcc tgttttctct
     2041 cttccttagt cttggaaata atcatcttgc gcagtttaaa caatgcctct tcggaaccct
     2101 tgccgtagaa catatgctcg gtccggaata agccaatgcc ttcggccccg aaaaatctgg
     2161 ccttgcgggc gtcttccggg gtatcggcat tagtgcgcac cttaagcctg cggaaagaat
     2221 cacaaagctt caggaactca atcaataact tattctcttc cgaggcgtcc atcatcttta
     2281 actgccccag atagacattg cctttggtcc cgtttaaggt gatccagtcg ccttctttaa
     2341 taattttatc accggcggtt atggttttgt ttcgcgaatc tatatgcaag ccgccgcagc
     2401 cgacaa
//
LOCUS       DATDUB010000021         2348 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_679732, whole genome shotgun sequence.
ACCESSION   DATDUB010000021 DATDUB010000000
VERSION     DATDUB010000021.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2348)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2348)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2348
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_679732"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1936)
                     /gene="secD"
                     /locus_tag="VJA84_00395"
     CDS             complement(<1..1936)
                     /gene="secD"
                     /locus_tag="VJA84_00395"
                     /inference="COORDINATES: protein motif:HMM:TIGR01129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031522 - cell envelope Sec protein
                     transport complex [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HLD40617.1"
                     /translation="MASNKNLKYKILLILGLLGFSVWLSFPLNKKIKLGLDLSGGMHL
                     ILRVDTSNLKEADRNDAVERAVEIIRSRVDQFGVAEPFIQRQGYDQIVVQLPGVTDSQ
                     RAKELVGRTALLEFKLVKDDPGALEEAASGKIPEGFDYLKDEDNKPILLSKTASLTGD
                     AVNNSLVGMDQYGLPSVKLEFNNKGIDVFAKLTGEHINERLAIVLDGKIHSAPAIRSK
                     IDSGEAEITRGGGFGPEEANDLRIVLRSGALPAPMVIEEERTIGALLGADSIQSGVRA
                     SLIGTALVFVFMLIYYLFSGLIACIALAFNFLIILAYMAYFGATLTLPGIAGIVLTLG
                     MAVDANVLINERIRDELKIGKSLYAAITNGYSKAFSAIFDSNVTTLIAAFFLFQFGTG
                     PIRGFALTLTVGLLASMFTAIFVTRTLFETLLLNRNFKNLTMLKIMGETKFDFIGKRK
                     ICYALSCVLIAIGLWSFFSKGKEAYGIDFSGGQIQEFSFSQPVSLDRMRQVIKDAGIA
                     DASIQQFKEDPKIVLVRTSADSSEALSGKLKESLADNPFTILRVEKVGPVVGKELSKK
                     AVLALVLSLLGILIYVAFRFKHFNFGIAGVIALFHDILVTVGVLALTGQQVDLLIVTA
                     LLTIAGFSINDTIVIYDRVRE"
     gene            complement(2093..>2348)
                     /gene="yajC"
                     /locus_tag="VJA84_00400"
     CDS             complement(2093..>2348)
                     /gene="yajC"
                     /locus_tag="VJA84_00400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013276161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HLD40618.1"
                     /translation="ILQMFPLLLVFIIFYFMLIRPQQKKEKERLNMLKNIKKNDEVVT
                     NGGIHAVVLNVKERTATLRVDDNVKIEVDKDAIARVEKVS"
BASE COUNT          670 a          608 c          486 g          584 t
ORIGIN      
        1 tctcccgcac ccggtcgtaa ataacaatag tatcattaat agaaaaaccg gcaatggtca
       61 aaagcgcggt aactatcaaa agatcaacct gctgtccggt caaagccaac acacccacag
      121 taaccaggat gtcatggaaa agggcaatca ccccggcaat cccgaagtta aaatgcttaa
      181 acctaaaagc cacatatatc agtataccca aaagtgacag caccaaggcc agaaccgctt
      241 tcttactcaa ttccttgccc accaccggcc ccactttctc cacccgcagg atagtaaaag
      301 ggttatccgc aaggctttct ttcagtttac ccgaaagggc ttctgagcta tcagcggagg
      361 tgcgcaccag cactattttc gggtcttcct taaactgctg aattgaggcg tccgcgatac
      421 cagcgtcctt aatcacctgg cgcatccggt caagagaaac cggctgagaa aagctgaatt
      481 cctggatctg cccgccggag aaatctatcc cataggcctc ttttcctttt gagaaaaatg
      541 accacaggcc tatcgctatc agaacgcagg acaaggcgta acatattttt ctcttgccga
      601 taaaatcaaa ttttgtctcg cccataattt taagcatggt aagattcttg aaattacggt
      661 ttaacaataa tgtctcaaag agagtgcggg taacgaatat ggcggtaaac atactggcca
      721 ataaacccac ggtcagggta agggcaaacc cccggatggg cccggtgccg aattgaaaca
      781 aaaagaaggc cgcgattaag gtggtaacgt tggaatcaaa aatcgcgcta aaggccttgg
      841 aataaccatt ggttattgcc gcatagagag atttgcctat ttttaactca tctctgatac
      901 gctcattaat cagtacattg gcatcaaccg ccatgcccaa ggtaagcact ataccggcaa
      961 tgccgggcag ggtgagggtg gcgccgaaat aagccatata agccaggatg atcaaaaaat
     1021 taaacgccag ggcaatgcag gcgatgagac cggaaaacaa atagtaaatc agcataaaaa
     1081 caaaaactaa tgccgtcccg ataaggctgg ccctgacccc gctctgaata gaatcagctc
     1141 ccagaagcgc tccgatagtg cgctcttcct ctattaccat cggtgccggc agggcgcctg
     1201 agcgcagcac tatccttagg tcattggctt cttcagggcc gaatccgccg ccccgggtta
     1261 tctcggcttc acccgaatct atcttagaac ggattgccgg ggccgagtgg attttcccgt
     1321 ctaagactat agccagcctc tcattgatat gctcgcccgt aagcttggca aagacgtcta
     1381 ttcctttatt attaaactcc agctttaccg aaggcaggcc gtactgatcc atacccacca
     1441 aggagttatt taccgcgtct ccggtcaagg aagcggtttt gcttaaaagt atgggcttgt
     1501 tatcttcgtc tttaagataa tcaaaacctt cagggatctt gccggaggct gcctcctcta
     1561 aagccccggg atcatccttt actaatttaa actctaaaag ggcggtccgg ccaaccaatt
     1621 ctttggcccg ctggctgtcg gtaaccccgg gtaattggac cacaatctgg tcatagccct
     1681 ggcgctggat aaacggctca gccactccga actggtcaac gcggcttctg atgatctcaa
     1741 ctgcccgctc cacggcatca ttcctgtcgg cctcttttaa gttagaggta tccaccctta
     1801 aaataagatg catcccgccg cttaaatcca agcctaactt tatcttcttg tttaagggaa
     1861 aggacagcca aaccgagaaa cccaataacc ctaagattaa aagaatttta tactttaagt
     1921 ttttatttga agccatatct acctcgctat gttacagcaa atggttaaat gaaaggctaa
     1981 ggctaaggtc aaggttagcg aaggttaagg ccgaggctga ggtcaaggta aaaaacaagc
     2041 ttaacctcaa cctaaaccta aacctttatt tttagcctta acctcgcgtt cattaggaca
     2101 ctttctccac ccgagcaatc gcgtccttat ccacttctat cttgacatta tcgtcaacgc
     2161 gcaaggtagc cgttctctct ttaacattca agactaccgc gtgtattcct ccgttagtta
     2221 ctacctcatc attctttttg atgtttttga gcatattcag gcgctctttt tcttttttct
     2281 gctgaggcct gatcaacata aaataaaaaa ttataaacac caataataac ggaaacatct
     2341 gtaatatg
//
LOCUS       DATDUB010000022         3007 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_2352260, whole genome shotgun sequence.
ACCESSION   DATDUB010000022 DATDUB010000000
VERSION     DATDUB010000022.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3007)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3007)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3007
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2352260"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..288
                     /locus_tag="VJA84_00405"
     CDS             <1..288
                     /locus_tag="VJA84_00405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40619.1"
                     /translation="TNKDSTPLSILNAAYKIGKDAGLRYVYIGNVPEEAWAIGSPTTA
                     LWPEEKTSCYKCQKSLISRMGFEVIENNLKSGACPSCGTVLDGIFTESRNG"
     gene            281..1993
                     /locus_tag="VJA84_00410"
     CDS             281..1993
                     /locus_tag="VJA84_00410"
                     /EC_number="6.3.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012984380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003952 - NAD+ synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD+ synthase"
                     /protein_id="HLD40620.1"
                     /translation="MGKKKQFLRIAICQINSWVGDFASNTRKIISFIKEAESKGCAIA
                     AFPELAVCGYPPEDLLFKNSFVGENIKCLKDIARQTANILAVVGFADKKGAKLYNGAA
                     LLGRGRILDIYHKVHLPNYGVFDEKRYFASGEGFKLYPLSPDVCLGINICEDIWVNDG
                     VISEQSRAGANLILTINSSPYHMGKIHLRQKVLREQARKNKAFILYVNLVGGQDELVF
                     DGQSMLVTDTGRVSAIAEAFKEDLRVVDIDISKLPKKSRSKKAVFLPLKIGKNKRTAE
                     ALPITSPRNIGPVEEIFSALVLGTRDYLLKNGFKRALLGLSGGIDSSLVACIAKEALG
                     SGNVIGLILPSKFNSRDSYADAVSLADNLGIEYKVIAIQDIFEDYIKTLKPHFQDRPW
                     NVAEENLQARVRGNILMALSNKFGWLVLTTGNKSEMGVGYATLYGDMAGGFAVIKDVP
                     KTLVYKLSEFYNQKAGKEIIPRRVFDKAPTAELRENQKDSDSLPEYAALDAILKAYVE
                     EDLPAGEIIKKGFDKAEVSRTMRLVDLSEYKRRQGPPGVKITPRAFGKDRRMPITNRF
                     REVV"
     gene            1996..>3007
                     /locus_tag="VJA84_00415"
     CDS             1996..>3007
                     /locus_tag="VJA84_00415"
                     /inference="COORDINATES: protein motif:HMM:NF039346.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HLD40621.1"
                     /translation="MFNPVKIKENLYWVGDIDWNSRSFHGFTYSTHTGTTYNSYLLVD
                     EKVALIDGVKADFFEEWHARISKVIDPKKIDYFICNHVEMDHSGSIPRMMRALPKAKL
                     VTNQRAKEALLKHFFSEWDFQIVKTGDTLNLGKRALRFIEAPMVHWPDSMFDYLEGEG
                     ILFSNDAFGQHYASTRRFDDEVSFDLIMDENAKYYANILWPLSSIILKKLDELKKMNV
                     PINMILTSHGLSWRAHPDKAIQSYYNWARGNSVSKVLIAYDTMYSSTEKMALAILEGV
                     ISEGVPAKLYRLPISDMGDIIKKFLDAKGLLLGSSTINNDILPTVAKFACELKGLKPL
                     NKI"
BASE COUNT          809 a          653 c          804 g          741 t
ORIGIN      
        1 acaaacaaag actcaacgcc gctaagcata ttaaatgcgg cctataaaat aggcaaggat
       61 gccggactgc gttatgtcta tatcgggaat gtcccggaag aggcttgggc tataggaagc
      121 ccaaccacgg ccctctggcc agaggaaaag acctcttgtt ataaatgtca gaaaagttta
      181 atttcccgga tgggatttga ggtgattgag aataatctaa aaagtggcgc ctgcccatcc
      241 tgcggaacag tcttagacgg tatttttaca gagagtcgga atgggtaaga aaaaacaatt
      301 tttgcgtatc gcgatctgcc agattaacag ctgggtgggg gattttgcct ccaatacccg
      361 gaagataatc agcttcatta aagaggccga gtctaaggga tgcgctatcg cggcctttcc
      421 ggaactggca gtctgcggtt atcctccgga agaccttcta tttaaaaaca gtttcgtcgg
      481 agagaatatt aaatgtttaa aagacattgc cagacaaacc gctaatatcc tggcggtagt
      541 ggggtttgcc gataaaaagg gggccaagct gtataatggc gccgcgctcc tgggccgggg
      601 gaggattctg gatatttatc ataaagtaca tctgcccaat tacggggttt ttgatgagaa
      661 acggtatttt gcctccggag agggctttaa gctctatcct ctttccccgg atgtctgcct
      721 ggggataaac atctgcgagg atatctgggt taatgacggg gttatcagtg aacaatcccg
      781 ggccggggca aacctgatat tgaccatcaa ctcctcgccg tatcatatgg gcaagatcca
      841 tctgcgccaa aaggtcctac gggaacaggc caggaagaat aaagccttta ttttatatgt
      901 caatctggtt ggcggccagg atgagctggt ctttgacggc cagagtatgc tggtaacgga
      961 taccggcagg gtctcggcta ttgccgaggc ctttaaagaa gacctgcgcg tagttgatat
     1021 agatataagt aagctcccca aaaaatccag gtccaaaaag gcggtctttt tacctcttaa
     1081 gattgggaaa aataagcgga ccgccgaggc cttacctatt accagccctc ggaatattgg
     1141 cccggttgaa gagatttttt cagccttggt cctggggacc cgggattatc tcttaaagaa
     1201 cgggtttaag agggcgcttt tgggcctaag cggagggatt gattccagct tagtggcctg
     1261 tattgctaaa gaagccctgg gaagcggaaa tgttatcggt ttgatcctgc cttctaaatt
     1321 taattcccgg gatagttatg ccgacgcggt cagcctggcg gacaacttgg gaattgaata
     1381 taaggtaatc gccatccagg atatctttga ggattatata aagaccctta aaccgcattt
     1441 ccaggacagg ccctggaatg tggccgagga aaatctccag gcccgcgtca gaggcaatat
     1501 cctgatggct ctatccaata aattcgggtg gttagtgctt accactggaa ataaaagcga
     1561 gatgggagta ggttatgcca ctttatacgg ggacatggcc ggaggtttcg cggtgattaa
     1621 ggatgtcccc aagaccctgg tttataagct gtcggagttt tataaccaga aggctggaaa
     1681 agagattatc ccccgccggg tttttgataa ggcccctacc gccgaattgc gggagaatca
     1741 aaaggattcc gacagcctgc cggaatacgc ggcgctggat gcgatattaa aggcctatgt
     1801 tgaggaggat ttaccggcag gggagattat taagaagggt tttgataagg ccgaggtatc
     1861 ccggaccatg aggctggtgg atttaagcga atataaacgc cgccaggggc cccccggggt
     1921 aaagattacc ccccgggcct tcggcaagga tagaaggatg ccgataacca acagatttag
     1981 agaggtggtg tagagatgtt taatccggtt aagataaaag aaaatttgta ttgggtcggg
     2041 gacatagact ggaatagccg cagttttcac ggctttacct attccacgca taccggcact
     2101 acctataatt cctatctttt ggtggatgag aaggtggcgc ttattgacgg ggtaaaggcg
     2161 gatttctttg aagagtggca cgcgcggatc agcaaggtga ttgatcctaa aaaaatagac
     2221 tattttatct gcaatcatgt ggaaatggat cattccggct ctatccccag gatgatgcgg
     2281 gccctgccca aggcaaaatt ggttaccaat caaagagcca aagaggccct gctcaaacat
     2341 ttctttagcg aatgggattt ccagattgtc aagaccggcg ataccttgaa tttaggaaaa
     2401 agggccttgc gttttattga ggccccgatg gtgcactggc cggacagtat gtttgattat
     2461 ctggaaggag aggggatact tttttccaat gacgcctttg gccagcatta tgcctccacc
     2521 cggcgttttg acgatgaggt gagctttgac ttgataatgg atgaaaacgc caaatattac
     2581 gccaatatcc tctggccgct tagctcaata atcctgaaga agctggatga gcttaaaaag
     2641 atgaatgtcc cgataaatat gatcctgacc agccacggcc taagctggcg ggctcacccg
     2701 gacaaggcga tccagtccta ttataactgg gcaagaggaa actcggtttc caaggtcctc
     2761 attgcctatg acactatgta ttcctccact gaaaagatgg ccctggcaat cttagagggg
     2821 gtgatctccg agggtgtccc ggccaagctc taccgcctgc ctatcagcga tatgggcgat
     2881 ataattaaga aattcttaga tgccaaaggg ctattgcttg gctcatccac cataaacaat
     2941 gatatcctgc ctaccgtggc caagtttgcc tgtgagctga aggggctcaa gcctttaaac
     3001 aagattg
//
LOCUS       DATDUB010000023         2689 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_2019179, whole genome shotgun sequence.
ACCESSION   DATDUB010000023 DATDUB010000000
VERSION     DATDUB010000023.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2689)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2689)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2689
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2019179"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(276..779)
                     /locus_tag="VJA84_00420"
     CDS             complement(276..779)
                     /locus_tag="VJA84_00420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012302135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase"
                     /protein_id="HLD40622.1"
                     /translation="MKIQGRAVLLGDNINTDFIISGRYKFSITDMKELAKHIMEDIDP
                     EFPKKLRPGESIIVAGENFGMGSSREQAPLVIRESGIVAVIAKSFARIFYRNGFNIGL
                     PLIQADTSRIKERDELAADFDLSILEDKSQGLKINIQPLSGVMQKLLADGGIVNHLKK
                     HQGKLEL"
     gene            complement(792..1838)
                     /locus_tag="VJA84_00425"
     CDS             complement(792..1838)
                     /locus_tag="VJA84_00425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010324971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043107 - type IV pilus-dependent motility
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus twitching motility protein PilT"
                     /protein_id="HLD40623.1"
                     /translation="MEIQELLSLSIEKGASDLHLTDGEPPLLRVDGALKRTDKPVLDR
                     DELKRLIYSVLTDMQKAEFEKELELDFSLALPDLDRFRVNVHMQKGSVEAALRRVPIE
                     IPQLDSLRLPPIIETLARKPNGLVLVTGPTGVGKTTTLAAMVDLINRERQSLIMMIED
                     PIEFIHKNKKSIVKQREVFSDTKSFSNALRHALREDPNVIVVGEMRDLETISTALTAA
                     ETGHLVLATLHTPNAPQTIQRIIDVFPSTQQTQIKLQLADCLQAVISQLLLPHISGKG
                     RVIATEIMVATAGIRNLIREQEIEQIPTLMQTGAQFGMRTMDKSLKELVKEGLVSLEA
                     ALEKVKHPDEFRNL"
     gene            complement(1997..>2689)
                     /locus_tag="VJA84_00430"
     CDS             complement(1997..>2689)
                     /locus_tag="VJA84_00430"
                     /inference="COORDINATES: protein motif:HMM:NF012550.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aconitase family protein"
                     /protein_id="HLD40624.1"
                     /translation="ALDMDGRFTICNMVVELGAKCGFMPVDKKTRDWLMAAAIGSRTI
                     ALWLKGRANKKYKVFQADNDAVYSLVKEYDVSKIMPGVAKPHSVDNYGLARDLKSVSV
                     NEPFIGTCTNGRIEDLKIAAKILKGRKVQPGVKLVIVPASQDIYLEALRSGLIETFIN
                     SGAVVLNPGCGPCVGTHQGVPADGEIVISTANRNFLGRMGNPKAFIYLASPATVAASA
                     VTGRITDPRKYL"
BASE COUNT          671 a          682 c          609 g          727 t
ORIGIN      
        1 ttagcgtcat tgcgagcgaa gcgaagcaat ctcttgcgac gggattgctt cggcacttcg
       61 tgcctcgcaa tgacacttta aaaatcgaat ctcgaaatag tgtttccgtc agagacaatg
      121 tcataattta gacatgtctg aattcaaata ttaaaagtca aaattcaaaa tgacaatcca
      181 aaatctaaaa attaagaata cctttttaaa gagtggtttt tgtaatttta aattttggtt
      241 tgcgattttg atttttgcat tttgattttt ggattttata gctccagctt cccttgatgt
      301 ttcttcagat gattgacaat cccgccatcg gcaagcagtt tctgcattac cccggaaagc
      361 ggttggatat tgattttaag gccttgactt ttgtcctcca agattgaaag gtcaaaatca
      421 gctgctaact catcccgctc tttaatccgg gaagtatccg cctgaatcaa aggcaggccg
      481 atgttaaagc cgttgcggta aaaaatcctg gcgaagctct tggcaataac cgccacgatc
      541 ccggactctc ttattaccag aggcgcctgc tcgcgggaag agcccattcc gaaattctcg
      601 cccgccacga ttatagactc acccggcctt agtttcttag ggaattccgg gtcaatatcc
      661 tccataatat gcttggccaa ttccttcata tcggtaatgg aaaacttgta tctgccggag
      721 attatgaaat cggtgttgat attatcgcct aaaagcacgg cccggccttg tattttcatt
      781 gttctccccg cttataaatt acgaaattca tccggatgtt tcaccttctc cagggccgct
      841 tccaggctca ccagcccctc cttgaccaat tcctttaaag acttatccat tgtgcgcatc
      901 ccaaactggg ccccggtctg catcagggta gggatctgtt caatctcctg ctcccggata
      961 aggttgcgga tgcccgcggt agccaccata atctccgtgg caatcacccg gccttttccg
     1021 cttatatgag gaagcaaaag ctgggaaatt accgcctgga ggcagtcggc aagctggagc
     1081 ttgatctggg tctgctgggt tgaaggaaag acatcaataa tcctctggat ggtctggggg
     1141 gcattcgggg tatgcagggt agccaggacc aaatgcccgg tttcagccgc ggtaagagcg
     1201 gtagagatag tctccaagtc gcgcatctca cccactacaa taacattggg gtcttctctt
     1261 aaggcatggc gcaaggcatt ggaaaaagat ttagtgtccg aaaaaacctc ccgctgttta
     1321 actatgcttt ttttgttctt atgaataaac tctatcggat cctcaatcat cattattaag
     1381 gactgacgtt cccggttaat caagtccacc attgccgcta aagtcgtggt cttgcccact
     1441 ccggtaggcc cggtaaccag aaccaggccg ttaggtttgc gggccagggt ttctattatc
     1501 ggcggaagcc ttaaggagtc taattggggg atctctatgg ggacgcgcct taaggccgcc
     1561 tctaccgagc ctttctgcat atgcacattc acccggaaac ggtctaagtc cggcagggcc
     1621 agggaaaaat caagttctaa ttctttctca aactcggcct tctgcatatc agtaaggacg
     1681 ctgtaaatca gccgtttcag ctcgtcacgg tctaagaccg gcttatccgt gcgctttagg
     1741 gccccgtcaa cgcgcaagag cggcggttca ccgtcagtca gatgcaggtc agacgcccct
     1801 ttttctattg acaggctaag cagttcctgg atttccatct ttcacctcct gtaaaaccct
     1861 aaatcctaaa ctctaaacac taaataaact aaaaattcca aacccaaaac tcaaaaaaat
     1921 aatgttttat gtttggaaaa tttgagtttt gaatttgttt agggtttagt gtttggggtt
     1981 tagagttttt cactttttat aaatatttcc tggggtcggt tatccggccg gtaacggcgg
     2041 atgccgcgac cgttgccggg gaggccaggt aaataaaggc cttggggttg cccatccggc
     2101 caagaaaatt gcggttggcc gtggaaataa ctatctcccc gtcggctgga acgccctggt
     2161 gcgtgcccac gcaggggccg cagccgggat taagcacaac cgccccggaa ttaataaagg
     2221 tttcaatcag gccgctcctt aaggcctcta aataaatatc ctgggaggcc ggaacaatca
     2281 ccaatttaac ccccggctgg accttgcggc ctttcaatat cttagccgct atcttcaaat
     2341 cctctatacg gccgttagtg caggtaccga tgaagggctc atttaccgat acggatttta
     2401 agtcccgggc taagccgtaa ttgtccacgc tatgcggctt ggccacaccg ggcattatct
     2461 tagaaacatc gtattcctta accagggaat ataccgcgtc attatccgcc tggaaaacct
     2521 tatatttctt attagcgcgc cctttaagcc agagggcgat ggtgcggctt ccaatagccg
     2581 cagccataag ccagtctcgc gtctttttat ctaccggcat aaaaccgcac tttgccccta
     2641 attccaccac catattgcag atggtaaaac ggccatccat atccagggc
//
LOCUS       DATDUB010000024         2738 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1184191, whole genome shotgun sequence.
ACCESSION   DATDUB010000024 DATDUB010000000
VERSION     DATDUB010000024.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2738)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2738)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2738
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1184191"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            116..1594
                     /locus_tag="VJA84_00435"
     CDS             116..1594
                     /locus_tag="VJA84_00435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016483987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase subunit beta"
                     /protein_id="HLD40625.1"
                     /translation="MADPKGFLKTKRRHAEYRPVCERIKDYGPVFTLRSVEHSQEQAS
                     RCMDCGTPFCHWGCPIGNYIPEWNEAVFKGDWRKAFELLDATNNMPEITGRLCPALCE
                     YSCVLGINDDPVTIRENELGIIEKGFEKGYIFAHPPKKRSGKKVAVVGSGPAGLSCAA
                     QLNRAGHKVVVFERDERIGGILRYGIPDFKLEKCLIERRANLWQKEGIQFKTKINVGI
                     DYPASKLLKEFDALCLACGSRVPRDLKIEGRELSGIHFAMDYLIQSNKRVSGEKPNPH
                     WKSSNAGLEAGQLIDAKGKKVLVIGGGDTGADCVGTAHRQGASCVIQIEVMPKPAECR
                     TEEMPWPKYPMILKTSTSHEEGGQRQWAVLTKKFSGENGQIKKVSCVRVEFPGKDAQG
                     CPLMKEAAGSEFEIEADLVFLAIGFSRPEHQGLVEDLNLRLDPRGNIQTDDNYMSSKK
                     GVFSAGDMRRGQSLIVWAISEGRRCARAIDEYLMGESRLPII"
     gene            2043..>2738
                     /locus_tag="VJA84_00440"
     CDS             2043..>2738
                     /locus_tag="VJA84_00440"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011430324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003883 - CTP synthase activity [Evidence
                     IEA];
                     GO_process: GO:0006221 - pyrimidine nucleotide
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006241 - CTP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="HLD40626.1"
                     /translation="MVKYIFITGGVISSLGKGIATASIAKILESCGFRVSLIKFDPYL
                     NVDPGTMNPYQHGEVYVTHDGAETDLDLGHYERFTGARLGRINNVTTGQIYSTVLARE
                     RKGDYLGKTIQVIPHITNEIKDRIKAVAKETKAEIILMEVGGTVGDIESLPFLEAARQ
                     FGLEEGRANALYIHLTLIPYIRAADEIKTKPTQHSVGTLREIGIQPDILLCRTEKPLD
                     DEVKSKISGWIPIS"
BASE COUNT          696 a          588 c          763 g          691 t
ORIGIN      
        1 tcagcgtgta ggggccagcg taagctgacc ttgtaatatc gctgccttac ctgcctgccg
       61 gcaggcaggc ggcagccgct accggcaacc gctacttcaa tagttaatat tcaacatggc
      121 tgatcccaag ggttttttaa aaactaagag aaggcacgcc gaataccgac cggtctgcga
      181 gcggatcaag gattacggcc cggtgtttac cctcaggagc gttgagcatt ctcaggagca
      241 ggcctcccgc tgtatggact gcggcacgcc tttctgtcat tggggttgcc ctatcggcaa
      301 ttatatcccg gaatggaatg aggcggtttt taaaggtgac tggaggaagg cctttgagct
      361 tttggatgcc accaataata tgccggagat taccggcaga ttatgcccgg ccttgtgtga
      421 atattcctgc gtcctgggga taaatgatga cccggtaacc atccgggaaa atgaattagg
      481 cattattgag aagggctttg aaaagggcta tatttttgct catccgccta aaaaaagaag
      541 cggtaaaaaa gtcgcggtgg tgggttccgg cccggccggg ctttcctgcg cggcccagtt
      601 aaaccgggcc gggcataaag tggtggtttt tgaacgggat gaaagaatag gcgggatatt
      661 aagatatggc atcccggatt ttaaattaga aaagtgcttg attgagcgta gagctaacct
      721 ctggcaaaaa gaagggatac aatttaagac taaaataaat gtcggaatag attatccggc
      781 ctcaaaatta ttgaaagaat ttgacgcgct ttgcctggct tgcggctccc gggttccccg
      841 ggatttaaaa attgaaggcc gggaattgtc cgggatacac tttgcgatgg attacctgat
      901 ccagtccaac aagagggtta gcggagaaaa accaaacccg cattggaaaa gttccaatgc
      961 gggtttggaa gcaggtcagc ttattgatgc taaaggcaag aaagtgctgg ttatcggtgg
     1021 aggggatacc ggcgccgact gcgtgggaac agcccatcgt cagggggcct cctgcgtgat
     1081 ccagatagaa gttatgccta aacccgcgga gtgccgcact gaggagatgc cctggccgaa
     1141 gtatccgatg attctgaaga cctcaaccag ccatgaagaa gggggccagc gccagtgggc
     1201 ggtcctgact aaaaagttta gcggtgaaaa tggtcagatt aagaaggttt cctgcgttag
     1261 ggtagaattc cccgggaaag atgctcaagg ttgtccgttg atgaaggaag ccgcgggcag
     1321 tgaatttgag attgaggctg acctggtgtt tttggctatc ggtttctcgc gcccggagca
     1381 tcagggatta gttgaagatt tgaatttaag actggacccc cgcggcaata tccagaccga
     1441 tgataattat atgagttcta agaaaggggt attttccgcc ggagatatgc gccgcggaca
     1501 atccctgatc gtctgggcca tctccgaagg ccgccgctgt gcccgggcca tcgatgagta
     1561 tttgatgggc gaaagccgat tgccaataat ataagtttct gtgtaatgaa tcagaagttg
     1621 tgaaataatt actgtttcgt gcctgttcgc ccttatgtct cgccggagaa gaaacacgaa
     1681 aaagacataa ggggagattt tttcacagct tttcagtgaa aaggggcgtt cttttaaaaa
     1741 tcccccttag tccccctttt tcaaagggga attcttgttc ccctctttca taaagaggaa
     1801 cctccccctt tcgtaaaggg ggatagaggg ggattttcgg gtcaggggag atttttcccc
     1861 gtttagtgac cggttacgtt tctttgtgtt ttttgtttga caacagtggt ttttgtgtta
     1921 tcctgaagta ggaattaggg taatcatcgg agtctttttg ttatgttaaa attaaaagtc
     1981 cgcagagagg cgcgcttgga gaagattgag gtgcgcctct tttgcttttt gcgggggata
     2041 caatggttaa atatatcttt atcaccggcg gggtaatttc aagtttgggc aagggcattg
     2101 ccacggcctc tattgccaag atcctggagt cttgcggctt tcgggtaagc ctgatcaagt
     2161 ttgaccctta tctgaatgtt gaccccggga cgatgaatcc ttatcagcac ggtgaggtct
     2221 atgtaaccca tgacggagcg gagactgatt tagatctagg ccactatgag agatttaccg
     2281 gcgcccggct ggggcggatt aataatgtaa ccaccggaca gatttacagc acggtgttgg
     2341 cccgggagag aaaaggggat tatctgggaa agaccattca ggtcattcct catatcacca
     2401 atgagatcaa agaccgaatc aaggccgtgg ccaaggaaac caaggccgag attattttaa
     2461 tggaagtagg cggcacggtc ggcgatattg agtctttacc atttttggaa gcggccaggc
     2521 agtttggttt ggaagaaggc cgggccaacg cgctttatat tcatcttacc ctgattcctt
     2581 atatccgggc cgccgatgaa attaaaacca agcccaccca gcattctgtc ggcaccctgc
     2641 gtgaaattgg tatccagccg gatattctct tgtgccgcac cgagaagcct ttggatgatg
     2701 aggtaaagtc aaaaatatcc ggctggatac caatttca
//
LOCUS       DATDUB010000025         4397 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_515887, whole genome shotgun sequence.
ACCESSION   DATDUB010000025 DATDUB010000000
VERSION     DATDUB010000025.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 4397)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4397)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4397
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_515887"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1509)
                     /locus_tag="VJA84_00445"
     CDS             complement(<1..1509)
                     /locus_tag="VJA84_00445"
                     /EC_number="6.3.2.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR01499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004326 - tetrahydrofolylpolyglutamate
                     synthase activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008841 - dihydrofolate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006730 - one-carbon metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="folylpolyglutamate synthase/dihydrofolate
                     synthase family protein"
                     /protein_id="HLD40627.1"
                     /translation="MTYRQAITYLNNFVNYEKKDYYSYRKSFRLGRMKGFLMLLGNPQ
                     DSLKCLHIAGSKGKGSVCIFAANILRSAGYRVGLYTSPHLSDARERIRVLSRTNHDPQ
                     ITYRESRPTSHEFEGMISRRELAALVERLKPAIKEYNSRNRDQALTFFEVWTALAFLY
                     FKEKQVDYAVLETGLGGRLDATNAVNPLVCGITPISYDHTQYLGNTLRQIAKEKAGII
                     KERQSAPRLRSGQARAPEHQMAVISALQEKEAREAIRKRCVQKKAKLYEIGRDILSFS
                     RKPAALPLGRRESRHLDSPVKPGNDRPLFRAGGQSFDLQGIKRRYNNLEIRLLGRHQL
                     GNAALAVGMVEALGDQRIKPAHIRQGLKAARWPGRLEVISRNPYIVLDGAQNAASALA
                     LKEAIRDNFRWQKLILVLGMSRDKDVPGFCRQFSDFCDKVVLTKSANPRAANPRDLAG
                     YFSGKKIVAADSVNKAISKAKAVAKKNDLILVTGSLFVVGEARAEWAATGGRP"
     gene            complement(1509..3092)
                     /gene="purH"
                     /locus_tag="VJA84_00450"
     CDS             complement(1509..3092)
                     /gene="purH"
                     /locus_tag="VJA84_00450"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0003937 - IMP cyclohydrolase activity
                     [Evidence IEA];
                     GO_function: GO:0004643 -
                     phosphoribosylaminoimidazolecarboxamide formyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HLD40628.1"
                     /translation="MTKIKRALISVSDKTGVVDFALGLHKLGVEILSTGGTAKALREA
                     KMPVIEVSDYTGFPEMLDGRVKTLHPKIHGGLLALRDKPEHTQSLKEHNIGLIDMVVV
                     NLYPFEKNTQKPGVSIEEAIENIDIGGPSMLRSAAKNYRSVAVVCNPERYAAVLEELR
                     NNNGALSRETLQEFGVEVFRETSRYDHMIYGYLKKHILDKAQDKEGAFPHCLGLNLVK
                     VQDLRYGENPHQKAAFYRDAGETQGLAAMKQLWGKELSFNNILDLNAAVNIVREFSLP
                     AAVFIKHNNPCGAAQNQDILKAYKQAWSCDRLSAFGGIVALNREVDLALARLIAKSGF
                     LECIISPKFSLETLGLLKDKKNLRLLELPVGAAPRGRPEQCATLDIKRVWGGALVQDE
                     DILTLDENNLKTVTKQKPSKKEMESLIFAWKIAKHTKSNAIILAKGTKTVGIGAGQMS
                     RVDSVFISTKKAGKLTAGSVLASDAFFPKEDAIVLAAKYRISAIIQPGGSIADEQIIQ
                     TADKCGIAMVFTGIRHFRH"
     gene            complement(3129..3821)
                     /locus_tag="VJA84_00455"
     CDS             complement(3129..3821)
                     /locus_tag="VJA84_00455"
                     /inference="COORDINATES: protein motif:HMM:NF017847.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF933 domain-containing protein"
                     /protein_id="HLD40629.1"
                     /translation="MKIAVVGLPEFPLGKKNLVDERLGALEGLIKPSKTTYLTIEFLD
                     GSRVKDVDGIICDKEAKLDLVIQDLEVVENRLQRLQEGEEKNFSQRLKEILEKNKCLI
                     EEPFSEEEKKTLLNYNLVSIKPIFFVDKNENKPAGEIIFAAYYSFGMSCFITGAKDKE
                     LKSWPIKKGATAYEAAGAIHSAIQQKFIKAEIIAYDDVVKAGGLNQAKQYMHLEGREY
                     VMKDGDLLNVRT"
     gene            complement(3958..>4397)
                     /locus_tag="VJA84_00460"
     CDS             complement(3958..>4397)
                     /locus_tag="VJA84_00460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020258837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HLD40630.1"
                     /translation="VLYLVFTLFAAIFSLPFGRLCDRIGRKKVLALAYLLWTALCLLF
                     GFFPRSHTAIILSFVLYGLHKAALEPAQKTLVSELAPPDYKASSLGAFQMVIGLCALP
                     ASLVAGLLWDKAGINIPFYFSLILTLVSLSLLALVKETKTASA"
BASE COUNT         1033 a         1255 c         1000 g         1109 t
ORIGIN      
        1 ggggcggccc cccgtggccg cccattctgc tcttgcctct cccaccacaa agagcgagcc
       61 ggtgactaag attaaatcat tttttttggc cacagccttg gctttagata tcgccttatt
      121 cacgctatcg gcggcaacaa tcttttttcc ggagaaatat ccggctaaat cccgcggatt
      181 agccgcgcgg gggttagcgg atttagtcaa gacaacctta tcgcagaaat ccgaaaactg
      241 ccggcaaaac ccggggacat ccttatcacg ggacatcccc aaaaccagga tcagcttttg
      301 ccagcggaaa ttatcccgga tcgcctcttt taaggctagg gccgaggccg cgttttgcgc
      361 gccatccagc acgatataag gattccggga aataacctcc agccttcccg gccaacgcgc
      421 cgctttaagg ccctggcgga tgtgcgcggg cttaatccgc tgatcgccta atgcctccac
      481 catccccacg gccaaggcgg cattgcctaa ctggtgccgg cctaagagcc ggatctctaa
      541 attattatac ctgcgcttaa tcccctggag atcaaatgat tgcccaccgg cccgaaatag
      601 aggcctgtca ttccccggct tgaccgggga atccagatgt ctggattccc tcctgcctag
      661 cggcaaggcc gctggctttc gcgagaatga caaaatatcc ctgcctattt cgtataactt
      721 agcctttttc tggacacagc gtttcctgat tgcctcccgc gcctctttct cctgcaaggc
      781 gcttatcacc gccatctggt gctctggtgc tctggcttgc cccgagcgta gtcgaggggc
      841 gctctggcgc tctttaatta ttcccgcctt ctccttagct atctgcctta aggtatttcc
      901 taaatactgt gtatggtcat agcttatcgg agtaatcccg cagaccaaag gattgacggc
      961 attagtcgca tccagcctgc cccctaagcc cgtctccaac accgcataat caacctgctt
     1021 ttccttaaaa tataaaaaag ccaaggccgt ccagacctca aaaaaggtca aggcctggtc
     1081 tctgttgcgg gaattatact ctttaattgc cggttttaat cgctcaacca gcgcggccaa
     1141 ttccctccgg ctgatcatcc cttcaaattc gtggctcgtg ggtcgtgatt cgcgatacgt
     1201 gatttgtggg tcgtgattcg tccgggatag aacccgtatc ctctccctcg catccgacag
     1261 atgcggcgag gtatacaagc ctaccctata tccggccgac cttaaaatat tggccgcgaa
     1321 gatacacacc gagcctttac ctttactgcc ggcaatatgc aggcacttga gactgtcctg
     1381 gggattgccc aacagcatca aaaacccttt catccttcct aacctgaatg attttcggta
     1441 agaatagtaa tctttctttt cgtaattaac gaagttatta agataggtaa tggcctgcct
     1501 ataggtcatt aatgcctgaa atgccttatc ccggtaaaga ccatcgcgat gccgcattta
     1561 tccgcggtct ggataatctg ctcatcggca atagagcctc cgggctggat gatggccgag
     1621 atccggtatt tggcggccaa gacgatagcg tcttctttgg gaaagaaggc gtcagaagcc
     1681 agaaccgagc cggcggtgag cttgccggct ttcttggtag agatgaatac cgaatccacc
     1741 cgggacatct ggcccgcgcc gatacctacg gtctttgtcc ccttggccag gataatggca
     1801 ttgctcttgg tatgcttggc tatcttccag gcaaagataa gggactccat ttctttcttg
     1861 gaaggttttt gcttagtaac tgtcttaaga ttattttcat ccagggtcag gatatcctca
     1921 tcctgaacca gggccccgcc ccagaccctt ttaatatcca atgtagcaca ctgttccggg
     1981 cggccacggg gggccgcccc tacggggagc tccaggagcc ttaagttctt tttatccttt
     2041 aacaaaccca aggtctccag gctgaatttg ggagagatta tgcactctaa aaatccgctt
     2101 ttggcaatca gccgagccaa agccaaatcc acctcccggt tcaaggccac aatcccgccg
     2161 aaggccgaga gccggtcaca gctccaggcc tgtttatagg ccttaaggat gtcctggttt
     2221 tgggcggcgc cgcagggatt attatgcttg ataaagaccg ccgcgggcag actaaactct
     2281 cttacgatat ttaccgccgc gtttaaatct aagatattgt taaaggagag ttccttgccc
     2341 catagctgtt tcattgctgc caggccttgt gtttcgccgg catcgcggta gaaggcggcc
     2401 ttctggtgcg gattctcgcc ataacgtaag tcctggacct tgaccaaatt cagccccaaa
     2461 caatggggaa acgcgccttc cttatcttgc gccttatcta aaatatgttt tttaagatac
     2521 ccgtagatca tatggtcata ccgcgaggtt tccctgaaca cctcaacccc aaattcctga
     2581 agcgtttccc gcgagagcgc cccgttattg ttccttaatt cctccaatac cgcggcgtaa
     2641 cgctcgggat tgcagaccac cgccaccgac ctgtagttct tggccgccga acgcagcatg
     2701 ctcgggccgc cgatatcaat attctcaatc gcctcttcta tggacacccc cggcttttgg
     2761 gtgttttttt caaaagggta taaattaacc accaccatat caatcagccc aatattatgc
     2821 tctttcaggc tttgcgtatg ttcaggtttg tcccgcaggg ccagcaggcc gccgtggatt
     2881 ttgggatgca gggtcttcac ccggccatcc agcatctccg gaaagccggt ataatccgag
     2941 acctcaatca ccggcatctt ggcctctcta agggccttgg ccgtgccccc ggtagataaa
     3001 atctctaccc ccagcttatg cagtcccagg gcaaaatcca ccaccccggt cttatccgaa
     3061 acgctaatca atgccctctt aatctttgtc ataattctcc tttatacata tagaaacggg
     3121 tgacgagatt atgttcttac attgagcaaa tccccatcct tcatcacata ttcccggccc
     3181 tcaaggtgca tatactgctt ggcctgattc aaccctccgg ccttgaccac atcatcataa
     3241 gcgataatct cggccttgat gaatttctgt tggatggccg agtggatcgc tccagcggcc
     3301 tcataggcgg tagcgccttt ttttatcggc cagctcttta actccttgtc cttggccccg
     3361 gtaataaaac aactcatccc gaagctgtag taagcggcaa agattatctc ccccgccggc
     3421 ttgttttcat tcttatccac aaagaatatc ggctttatgc tcaccaggtt ataattgagc
     3481 agggtctttt tctcctcctc gctgaaaggc tcttcaatca ggcatttatt cttctccaat
     3541 atttccttga gacgctggga aaagtttttc tcttcccctt cctggagccg ctggaggcgg
     3601 ttttccacca cctccaaatc ctgaatcacc agatccagct ttgcctcttt atcgcagata
     3661 atcccatcga catccttgac ccttgagccg tctaagaact caatagtcag gtaggtggtc
     3721 ttggaaggtt taatcaaacc ctccagggca cccaggcgct catcaaccag attcttcttg
     3781 cccaacggaa attccggtaa ccccacaaca gctatcttca ttttttatcc ttccagtagt
     3841 gaacggtttc aaaccgttca ctacatggac gcacactatg cgtccactac aggttataca
     3901 aatctgacgg cattacctca cttattctaa cattaaaccc ggaatttgca ataggaccta
     3961 tgcggaggcg gtttttgtct cttttaccaa agccaaaagg ctaagggaga caagggttaa
     4021 gataagggaa aaatagaacg ggatgtttat gccggctttg tcccaaagca acccggcaac
     4081 cagcgaggca ggcagggcgc acaaaccgat gaccatctga aaggccccca gactgctggc
     4141 cttatagtca gggggcgcga gctccgagac cagggttttt tgcgccggct caagggcggc
     4201 cttgtgcagg ccgtagagga caaaagaaag gataattgcc gtatggcttc gcgggaaaaa
     4261 accaaaaagc aggcataacg ccgtccataa aagataggcc aaagccagaa cctttttcct
     4321 gcctatccgg tcgcaaagcc ggccaaaggg gagggaaaat atcgccgcga aaagcgtaaa
     4381 taccaggtat aaaaccg
//
LOCUS       DATDUB010000026         6303 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_351226, whole genome shotgun sequence.
ACCESSION   DATDUB010000026 DATDUB010000000
VERSION     DATDUB010000026.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 6303)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6303)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6303
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_351226"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..105)
                     /locus_tag="VJA84_00465"
     CDS             complement(<1..105)
                     /locus_tag="VJA84_00465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019177157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly scaffold protein"
                     /protein_id="HLD40631.1"
                     /translation="MEQAYSEKVMDHFLHPRNIGEIPDASGVGNVGNPV"
     gene            complement(128..781)
                     /locus_tag="VJA84_00470"
     CDS             complement(128..781)
                     /locus_tag="VJA84_00470"
                     /inference="COORDINATES: protein motif:HMM:NF023646.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase C-terminal
                     domain-containing protein"
                     /protein_id="HLD40632.1"
                     /translation="MIVTQKKPQEEILNMLKKHNQVFLIGCGECSTTCHTGGEKEVLE
                     MKQLLESQGKKVTGWVIPNAPCIAAQTKAGFAQNMPALRDTQAILVLSCGLGVQSVKE
                     NDRFGLEVLPALNSMFGTLMDAKGNFHEVCSNCGECVLDQTGCICPITRCPKGLLNGP
                     CGGVMKGKCEVDRSRDCAWVLIYKELEKKGQLDKMKALSKPKDYGKAGKPHKVLVNA"
     gene            complement(884..2188)
                     /locus_tag="VJA84_00475"
     CDS             complement(884..2188)
                     /locus_tag="VJA84_00475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010584534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="replication-associated recombination protein A"
                     /protein_id="HLD40633.1"
                     /translation="MDLFEDKSINPKNIPLAARMRPKSLDEYAGQSHIIGKGKLLRRA
                     IESDRLTSLILYGPPGSGKTSLAYCISAVTKSEFTAVNATVSNVEELRRIIQKAKHLK
                     SASAKKTILFIDEIHRFNKAQQDVLLPDVEENNIVLIGATVHNPFFSLVAPLLSRSLV
                     FELKPLSQKEILTILNNALQDKEKGLGNIKVKAQKEALEFLSQVSDGDARRALSALEV
                     GTLTTEPDKEGIINFDLAIAQESIQKKAVLYDRDEDAHYDTASAFIKSMRGSDPDAAL
                     YWLAKMLYAGEDPRFIARRICICASEDVGNADPQALVLAASALSVSEFVGLPECRIPL
                     AQAAVYVACAPKSNAAYLGIEKASEDVEKGRLLEVPEHLKDASYPGAKELGHGQGYKY
                     AHDYKDHYVQQEYKPSTARYYLPTEIGYEAKIKKRLEELRKK"
     gene            complement(2192..2347)
                     /gene="ssrS"
                     /locus_tag="VJA84_00480"
     ncRNA           complement(2192..2347)
                     /ncRNA_class="other"
                     /gene="ssrS"
                     /locus_tag="VJA84_00480"
                     /product="6S RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00013"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00013"
     gene            complement(2436..4520)
                     /locus_tag="VJA84_00485"
     CDS             complement(2436..4520)
                     /locus_tag="VJA84_00485"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: protein motif:HMM:NF036799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000049 - tRNA binding [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004826 - phenylalanine-tRNA ligase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HLD40634.1"
                     /translation="MKISYNWLKDFVDIRLKPEDLAQRLTMAGLEVKAIDKFEDDYVF
                     EIEITSNRPDWLSVIGVAREIAAVTKSKVKSQKSKFKIQNHKRETIPFKIAIEDKKAC
                     PLYSARVISDVKIGPSPEWMAKRLRSIGLRPVNNIVDITNYVLFTTGQPLHAFDSDKI
                     VGAKISARFAQKNEEIITIDGIKRKLTPEILVIADENHPIAIAGIMGGKDTQVNESTK
                     NILLESAYFAPTVVRPAVRRLALASDSSYRFERSVDITQVVNSSDLAAGLIQKYAAGK
                     ICGLCLAGLKPKKTAGQGAAVGLPIRQRAMVRLPIAAAIAQATKVITFSLSQANKLLG
                     REIPLVRAKSIFKTLEFKVGTSKGDVLKLTPPGFRQDIKSDVDLVEELCRIYGYENIP
                     LSLPAVRHQAIEEDGLILIRKKAREALTSLGYSEAITYSLLSREIIAKAAGEDSADIV
                     CLENPLSAQQEVLRPDLSIGLLGVLARNLELGNRNPGFFELGDCFLKEKESRVLGLIE
                     EGGLIELKGKVELLLAKLGVEDYSFANMAYPVFSPGQGASLVVSGCEAGIIGQVNPDV
                     LKNFKIDSSGVSYCELNLDALKPYVRFEKAYTELPKYPAVSRDLTLIAKEQVSYQGIL
                     DEIMTARIKELEAVRFKDIYCSEALGKDRKSITISLEFRSPEATLTDFQVNGYMEKIV
                     QTLTLNPGISLR"
     gene            complement(4746..5855)
                     /gene="pheS"
                     /locus_tag="VJA84_00490"
     CDS             complement(4746..5855)
                     /gene="pheS"
                     /locus_tag="VJA84_00490"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007222035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009328 - phenylalanine-tRNA ligase
                     complex [Evidence IEA];
                     GO_function: GO:0004826 - phenylalanine-tRNA ligase
                     activity [Evidence IEA];
                     GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HLD40635.1"
                     /translation="MPFDWTVLEQEAQDKITRSESLEALEQLKIKYLGRQGLLAGITG
                     SIPGLPPEERPEVGKGANLFKGAILRLLDEREKQLKTRDRACAVNFDFSLPGKTVQSG
                     TTHPITQTIEEITSIFTRMGFVTVEGPEVENEFNNFTGLNIPLDHPSRDAFDTFYLKS
                     PQSTVHSPQKKIKDHRLSTIDYRLLLRSHTSPVQIRVMRKHKPPLAVIVPGKVYRPDA
                     VDASHSFMFHQVEGFLVDEAVSFSDLKGVLTLFARKLFGEDIKMRFRPHFFPFTEPSA
                     EVDISCIICGAHKSTRAQEHQQKRCSVCGGKGWLEILGCGMIHPNVFKNVGYPKGKYS
                     GFAFGMGVDRIAMLKHGINDIRLFYENDLRFLRQF"
     gene            complement(5807..>6303)
                     /locus_tag="VJA84_00495"
     CDS             complement(5807..>6303)
                     /locus_tag="VJA84_00495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40636.1"
                     /translation="RFCRILFLLFAICYSLSAICYAQPMVSSVELIEKAKELDGQEVI
                     YEGEVIGEVMTRGDYSWVNLNDGLNAVGVWMGNNSLGLIYFAGGYKSRGDWLRIRGVF
                     NRACRRHGGDLDIHAQDITKIRSGRLVKHRLVGEKKRIVLILAGVCLCLLIGQFLSRK
                     LKIK"
BASE COUNT         1565 a         1695 c         1383 g         1660 t
ORIGIN      
        1 tacgggattc ccgacattac ctactccgct ggcatccggg atctccccga tattcctggg
       61 gtgcagaaaa tgatccatta ccttttcgct gtatgcttgt tccattttgg tttctctttc
      121 gcgggtttta agcgttaact aacactttat ggggtttgcc ggcctttccg taatccttag
      181 gctttgaaag cgccttcatc ttgtctaact gccccttctt ttccaattcc ttataaatca
      241 aaacccaggc gcaatcccgg gagcggtcca cctcgcactt gcccttcatc accccgccgc
      301 aggggccgtt aagcaggccc ttgggacagc gggtaatcgg gcagatgcat ccggtctggt
      361 ccagcacgca ctcaccacag ttggagcaga cctcatgaaa attacctttg gcatccatca
      421 gggtgccgaa catagaatta agcgccggta agacctctaa accaaaacgg tcgttttctt
      481 tgactgactg cacccccagg ccgcaggaca agaccaggat ggcctgggta tcccttaagg
      541 ccggcatatt ctgggcaaaa ccggccttgg tctgggcggc aatacagggg gcattgggaa
      601 tgacccagcc ggtaaccttc ttgccctggg attccaggag ctgtttcatc tccaggactt
      661 ccttctcccc tccggtatgg caggtggtag aacactcccc gcagccaatc aaaaagacct
      721 gattatgctt cttaagcata ttcaggattt cttcttgagg ttttttctgg gtaacaatca
      781 taataggttc tccgttaact ataggccatc gactacagac ccttaactat ttttcttata
      841 ttattatctc acttttacaa gcaaactcaa gaaaaatctg gccctatttc ttcctcaatt
      901 cctccagccg cttttttatc ttggcctcgt agccgatctc tgtgggcaaa taatacctag
      961 ccgtggaagg tttatactcc tgctggacat aatggtcttt gtaatcgtgg gcatacttat
     1021 agccttggcc atggcccaat tctttggctc ccgggtaact ggcgtctttt aaatgttccg
     1081 gcacctccag aagccttccc ttttccacat cttcgctggc cttctcaata cccagataag
     1141 cggcattgga cttgggggcg caggccacat agaccgcggc ctgtgccaga ggtatgcggc
     1201 actccggcag gcccacaaac tcggaaaccg aaagcgcgct ggcagccagg accaaggcct
     1261 gggggtcggc attgcccaca tcctcgctgg cgcagatgca aatcctgcgg gcaataaacc
     1321 gggggtcttc cccggcataa agcatcttgg ccagccaata aagcgcggca tccggatccg
     1381 agccgcgcat actcttgata aaggcggaag ccgtgtcgta atgggcatcc tcatcccggt
     1441 cataaagcac cgccttcttc tggatagact cctgggctat ggccaaatca aaattaatta
     1501 tgccctcttt atccggctcg gtggtcagcg tcccgacctc taaagccgat aatgcccgcc
     1561 gggcatcacc gtcgctgacc tggctcaaga attccagggc ctctttttgg gccttgacct
     1621 tgatattacc taagcccttt tctttatctt gaagggcatt attgaggatg gtcaaaatct
     1681 ccttctggct caatggcttt aactcaaaga ccaaactccg ggaaagaagc ggggccacca
     1741 aagaaaagaa aggattatgc accgtggccc cgatcaagac gatattgttc tcctccacat
     1801 ccggaagcaa aacatcctgc tgggccttgt taaaacggtg gatttcatca ataaaaagga
     1861 tggtcttttt cgcggaggcg gattttaaat gtttggcctt ctggataatc ctgcgcaatt
     1921 cctcaacatt agagaccgtg gcattaacag cggtaaattc ggatttggtt actgccgaga
     1981 tgcaataagc cagggaggtc ttgcctgaac ccggagggcc gtaaaggata agggaggtca
     2041 gccggtcaga ctcaatcgcc cggcgcagga gtttaccttt accgataata tggctttggc
     2101 cggcgtattc atctaaactt ttgggccgca tccgcgccgc taggggaatg tttttggggt
     2161 ttattgattt atcttcaaag agatccataa aaaaatcccc gcactgtgcc gttagactga
     2221 tcgtttgaac cctgtttttc aggtgggggc ctcctcttaa aggctaggcc taaaagagag
     2281 tttgagctcc cgttaaaaaa gtgttggttc acttttactc aagtcttaac gcgcacggca
     2341 gggacaatta aaagaacagt ttcctttttc tattttaagt ataccactgc ctgcggaaaa
     2401 aatcaagaga tttttttatt tcttcccccc cccccttaac gcaggctgat tcccgggttt
     2461 agggtaaggg tttgaactat tttttccata tagccattca cctggaaatc agtaagcgtg
     2521 gcctcgggag agcggaattc caaagagata gtgatagatt tcctgtcctt gcccagcgcc
     2581 tctgaacagt aaatgtcctt aaaccttacc gcctctaact cttttatccg cgcggtcatg
     2641 atttcatcaa ggataccctg ataagaaacc tgctctttag ctatcaaggt caaatcccgg
     2701 cttactgccg gatacttggg aagctcggta taggcctttt caaaacggac atacggcttg
     2761 agcgcgtcta agtttaactc gcagtaagaa accccggagc tgtctatttt aaagtttttt
     2821 aatacatcag gatttacctg gccgattatt cccgcctcac atcctgaaac tactaaactc
     2881 gcgccctggc ctggggaaaa aacaggataa gccatatttg caaagctgta atcctctacc
     2941 cctaacttag ccagcaataa ttctaccttg ccttttaatt ctataagccc gccttcttca
     3001 atcagcccta atacccggct ttccttttct ttcaggaaac aatctcccag ttcaaaaaaa
     3061 cccggatttc tattccccag ttccagatta cgggccaaaa cccccaacag cccgatgctc
     3121 aagtccggcc tcaaaacctc ctgctgggcg cttaaaggat tttctaagca gacaatatcc
     3181 gctgaatcct ctcctgcggc cttagctata atttcccggc ttaacaaact ataggtaatt
     3241 gcctcgctgt atcctaaaga agttaatgcc tctcgcgcct ttttccggat aagaataagg
     3301 ccgtcttctt caatcgcctg atgccggact gccggaaggc ttaagggtat attttcataa
     3361 ccatagatac ggcagagctc ctcaaccagg tcaacatcag acttaatatc ctgacgaaat
     3421 cctggtggag tcaacttcaa gacatcgcct tttgaagttc caactttaaa ttccagggtt
     3481 ttaaaaatag atttagccct gactaaaggg atttcccggc ccaataattt attggcttga
     3541 gacagactga aggttataac cttagtggct tgggctatgg ctgcggctat aggaagccgc
     3601 accatcgccc tctggcgtat cggaagccca accgcggccc cctggcctgc cgtcttttta
     3661 ggttttaacc cggcaagaca aaggccgcag attttacccg cggcatactt ctggatcagc
     3721 ccggcggcca gatccgaact gttgacaacc tgggtaatat ccaccgaccg ctcaaaacgg
     3781 taggaagagt cgctggctaa agccagccgc cggaccgccg gacgaacaac cgtcggagcg
     3841 aaataggcgc tttctaaaag gatattctta gtggactcat tgacttgcgt atccttgccg
     3901 cccataatcc cggcaatggc tattggatga ttttcatcag caattactaa aatctccggg
     3961 gtcagttttc tttttattcc gtcaatcgta attatctctt cattcttttg agcaaagcgc
     4021 gccgaaattt tcgcccctac aattttgtcc gagtcaaagg catgcaacgg ctgaccagtt
     4081 gtaaacaaaa catagttggt aatatccaca atattattta ccggccgcag tcctattgac
     4141 cttaatcttt tggccatcca ttccggcgaa ggccctatct ttacatcgga aatgaccctg
     4201 gccgagtaaa gggggcaggc cttcttatct tcaatagcga ttttgaaagg aatggtttct
     4261 cttttgtgat tttgaatttt aaattttgac ttttgacttt tgacttttga ctttgtaacc
     4321 gccgctatct cccgggcaac cccgattacc gagagccagt ccggacggtt agaggtaatc
     4381 tcaatctcaa agacatagtc gtcctcaaat ttatcaatgg ccttaacctc aagtcccgcc
     4441 atagtcagcc tctgtgccag gtcctcgggc tttagcctga tatccacaaa atctttcagc
     4501 caattataac ttattttcat ccaaaaatct ccatatcaac ccattaatcg cggacgcaca
     4561 agaagcacca acacaagagt accagtagtg aacggtttca aaccgttcac tactgacgga
     4621 ctgcggcagg tgtctcgtgc gagttccgca ggcgctattc cacaatgtaa ttattaagaa
     4681 aagcgccgag gactgtttga gcacgggatg cctgccgcag tccggcagga aataacccgc
     4741 gcattctaaa attgtctcaa aaatctcaag tcattctcat aaaacagccg gatatcgtta
     4801 atcccgtgct taagcatcgc gatgcggtcc acccccatcc caaaggcaaa accgctgtat
     4861 tttcctttag gatatccgac atttttaaag acattgggat ggatcatccc acagcccaga
     4921 atctccagcc agcccttgcc cccgcagaca ctgcaacgtt tttgctggtg ctcttgcgct
     4981 cttgtgctct tgtgcgcccc gcatataata caagaaatgt ccacttcggc ggaaggctcg
     5041 gtgaaaggaa aaaagtgggg gcggaaacgc atcttgatat cctctccaaa gagcttcctg
     5101 gcaaaaaggg tcaagacccc tttcaaatcc gaaaaactca ccgcctcatc cactaaaaag
     5161 ccttccacct gatgaaacat aaatgagtgc gaggcatcta ccgcgtccgg acggtagacc
     5221 ttgcccggca caatcaccgc cagaggcggc ttgtgctttc gcatcacccg gatttggaca
     5281 ggtgaggtat gactgcgcaa caatagtcga tagtctatag tcgatagtct atggtctttt
     5341 attttcttct gtggactgtg gactgtggac tgtggacttt ttaaataaaa tgtatcaaag
     5401 gcgtctcttg aaggatggtc taagggtata ttcaggccgg tgaaattgtt aaactcattt
     5461 tccacttccg ggccctctac ggtcacaaaa cccatccggg taaatataga ggtaatttct
     5521 tctatggtct gggtaatggg atgggttgtc ccggactgga cagtttttcc cggcaggctg
     5581 aaatcaaaat tgaccgcgca agccctatcc cgcgttttta gctgtttttc cctttcatcc
     5641 aataaacgca ggattgctcc tttaaacaga ttggcccctt taccgacctc cggcctttct
     5701 tccggcggca ggccgggaat agagccggta atcccggcca aaaggccctg ccggccgaga
     5761 tatttaatct ttaactgctc taaggcttct aaactctcgg agcgggttat tttatcttga
     5821 gcttcctgct caagaactgt ccaatcaaaa ggcataaaca tacccctgct aatattaaga
     5881 ctattctctt tttctcgccc accaggcggt gtttaactaa tctgccgctt cggattttgg
     5941 ttatatcctg ggcgtggata tccaggtccc cgccgtgccg gcggcaggcc cggttaaaca
     6001 cgcctcggat ccgcagccag tcgccccggg atttataacc tcccgcgaag taaataaggc
     6061 ccaaggaatt attccccatc cagacgccta cagcattcag gccgtcattc agattgaccc
     6121 aggaataatc cccccgggtc attacctccc cgattacttc tccctcatag ataacctctt
     6181 ggccatccaa ttccttggcc ttttcaatca gctctacgga agaaaccatc ggctgggcgt
     6241 aacagatagc agatagcgaa tagcagatag cgaatagcaa aaataagatt ctacaaaagc
     6301 ggg
//
LOCUS       DATDUB010000027         7122 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_351565, whole genome shotgun sequence.
ACCESSION   DATDUB010000027 DATDUB010000000
VERSION     DATDUB010000027.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 7122)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7122)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7122
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_351565"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..89)
                     /locus_tag="VJA84_00500"
     CDS             complement(<1..89)
                     /locus_tag="VJA84_00500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013681712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40637.1"
                     /translation="MRKRILSGMRPTGRLHLGHLFGVLENWKRL"
     gene            complement(86..2242)
                     /gene="infB"
                     /locus_tag="VJA84_00505"
     CDS             complement(86..2242)
                     /gene="infB"
                     /locus_tag="VJA84_00505"
                     /inference="COORDINATES: protein motif:HMM:TIGR00487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HLD40638.1"
                     /translation="MSEKNVKTKSAGQKAVVGLHIAQAAGQKAVVGLHIAQAAVSKTK
                     TVKKAPKAKAKPKAVHPVKPLSQAKERSIGVKKAVAVRKPRVKKEAPAVVKPAEKPQA
                     DQLKIIPPAKESITAPEVKGPAAAAEVVSVPQEKIVEIDIPVMLKELAFALGEKPAVI
                     IKKLLIEHKLLANLNFPVSEELALRIASGYGYKIKRKPTEEELLFKAHEADDPLKLKP
                     RPPIVTFMGHVDHGKTSLLDAIRKSKVADTEYGGITQHIGAYSVSLAHGKITFLDTPG
                     HEAFTAMRARGAKVTDIVVLVVAADDGVMPQTIEAIDHAKDAQAAIIVAMNKIDKSQT
                     NVDMLKKQLSELGLAAEDWGGKTISVGVSAKTGQGIDELLEMILLEAEMLELKADPLK
                     PASGVVLEAKVTEGRGPVATLLVENGTLRVQDVIIAGPYCAKVRAMFNEYGKPVREAP
                     PSTPVEVLGLSGLPDAGEQFFALSDEKKARELAAKRKAQLRERELKPIKMMSLEDLSN
                     QIKEGRVKELKLILKADVSGSLQAIIESLKKLSSEEVKLNIIHQGIGSINVSDVILAE
                     ASGAIIMGFHVDTDERSKEEADKTGVDIRVYNVIYELINDLRTALEGLLEPKLKKIFL
                     GRIAVRQVFKLTKSGNIAGCYVEKGKITRTSKVSLLRNGAVVYEGSLQSLKRFKDDVR
                     EVTEGMECGIALAGFSETMPGDVIEAYDVEKIARKL"
     gene            complement(2262..3488)
                     /gene="nusA"
                     /locus_tag="VJA84_00510"
     CDS             complement(2262..3488)
                     /gene="nusA"
                     /locus_tag="VJA84_00510"
                     /inference="COORDINATES: protein motif:HMM:TIGR01953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor NusA"
                     /protein_id="HLD40639.1"
                     /translation="MNGELLSVLEHMEREKGIKKDILIEAVELALASAVRKAAGINPG
                     DEVKVVLDRQTGEIKAFSGGEEIKSRDFGRIAASTAKQVIIQKIREAEKDVIFNEFNA
                     KVGQIISGTVYRFEKGNVIVDLMGKAEGVLSKREQIPSDEFRQGQRVSAYLAEVRKEA
                     KGPQILLSRSHPNFVKKLFDLEVPEIYEGIVEVKAISREPGERTKIAVWSKDEKVDSV
                     GSCVGMRGARVKNIVNELRGERIDIVRYSEDSHSYIAASLSPAQISEIKLNKENKKAT
                     VIVNQDQLSLAIGKHGQNVRLASKLTGWNLDVRTKEEYAREMLSPLASPIGEPKEALA
                     EKPQEAAEEASQEPVLSLEQLPGVGEKTKELLIASGFADVEAVANAQAEALAGIKGIG
                     KVKAGKLIKEAKKLIK"
     gene            complement(3488..3958)
                     /gene="rimP"
                     /locus_tag="VJA84_00515"
     CDS             complement(3488..3958)
                     /gene="rimP"
                     /locus_tag="VJA84_00515"
                     /inference="COORDINATES: protein motif:HMM:NF014617.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000028 - ribosomal small subunit assembly
                     [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA];
                     GO_process: GO:0042274 - ribosomal small subunit
                     biogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimP"
                     /protein_id="HLD40640.1"
                     /translation="MMGYHNEEILEKIRETAGPVIEGAGFEIVDLRLIRANRRFILRF
                     LVDKPEGGISLEECSRLNGEIGRLLDERDILGGESYVLEVSSPGVDRPLFSGKDFLRI
                     RGRMVRIFLNEPQEGRLELAGEVEAVKDDCLLLKADERTVKLSLTKIKKAKQVI"
     gene            complement(4241..5482)
                     /gene="proS"
                     /locus_tag="VJA84_00520"
     CDS             complement(4241..5482)
                     /gene="proS"
                     /locus_tag="VJA84_00520"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008826417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004827 - proline-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006433 - prolyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HLD40641.1"
                     /translation="MLWTKSFIPTLRDAPQEAETAAHKLMLRAGLTRMLVAGVYSYLP
                     LGLKVLNNIQRIVRQEMNAKGAQELLLPALQPQELWDTTGRNSLMEEIMIRFIDRRGR
                     KMCLGPTHEEIITHLAAGNINSYKQLPFILYQIQSKFRDEIRPRFGLIRGCEFIMKDA
                     YSFDADEEGLEKNYRLMYDAYLKIFARAGLNCLITEADSGVMGGKVSHEFMAPAESGE
                     DSVFVCPGCNHAATARIDKCPKCSSDTQEKKAIEIGHIFKLGTKYSQPLSALFTDENG
                     KRKAMIMGCYGIGVSRMVAAVIETNHDENGIIWPKEISPFDAIILPLNISDAQTRDTA
                     FKLYRELTDLGLETLLDDRDERSGVKFNDADLIGIPLRIVIGPKNLKENKLEIQRRKD
                     KSVELVSIEQAVGKIREETGK"
     gene            complement(5591..6838)
                     /locus_tag="VJA84_00525"
     CDS             complement(5591..6838)
                     /locus_tag="VJA84_00525"
                     /inference="COORDINATES: protein motif:HMM:NF012652.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CpaF family protein"
                     /protein_id="HLD40642.1"
                     /translation="MSQELKDKIRKTIREQSHIFSGEKTDENHLRYVIRRIIEELCLK
                     DHLKIEEAVSAKIIEELVNEFLGLGPLKALLEDKGITEIMVNGPHKVYIEKGGKKILS
                     EVAFENNQHLMHIIQKILAPTRRHVDEMTPFTDVSLPDGSRVNIIIPPLSLHGPVMTI
                     RKFLKEFGSVEDLAAKDTLSRNMADFLTAAIKAKLNIIFSGATGSGKTTTLNILSSYI
                     SPDERIITIEDTAELKLNQEHVVTLEAKPGNIEGRGEITIRDLFRNALRMRPERIILG
                     EIRSAEALDMLQAMCSGHDGSLAVLHASSPQDVISRIETMILISGVNIPMWAIKKQIA
                     SSLNLIVHQEQLADGSRKITHITEVRGLENEELVLQDLFSYEIEKVTDGRVIGSWKNH
                     GVVPLFFNRFKKRGVELSEEIFK"
     gene            complement(6816..>7122)
                     /locus_tag="VJA84_00530"
     CDS             complement(6816..>7122)
                     /locus_tag="VJA84_00530"
                     /EC_number="1.17.7.3"
                     /inference="COORDINATES: protein motif:HMM:NF016438.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046429 - 4-hydroxy-3-methylbut-2-en-1-yl
                     diphosphate synthase activity [Evidence IEA];
                     GO_process: GO:0016114 - terpenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HLD40643.1"
                     /translation="IISCPACGRTEANIEAIVNELYRRVFDASNASLLDRPVKLAVMG
                     CVVNGPGEAEDADLAIAFGRNEGLIYKDAKPLRKVPFDQAVNELLKEWKRYVPGTKR"
BASE COUNT         1635 a         2068 c         1489 g         1930 t
ORIGIN      
        1 agccttttcc aattttccag caccccgaac aaatgcccca ggtgcagcct gcccgtgggc
       61 cgcattccgc tcaggatacg ctttctcata gtttccgggc tatcttctcc acatcatagg
      121 cctcaatcac atccccgggc attgtttccg agaaaccggc caaggcaatc ccgcactcca
      181 taccctcggt gacctcgcgc acatcgtcct tgaaacgttt caaagactgc aaagaccctt
      241 catagaccac agccccgtta cgcaggaggc tgaccttgct cgtccgggta atcttgccct
      301 tttccacgta acagccggcg atatttccgg acttggtcaa cttaaatacc tggcgcaccg
      361 cgatccttcc cagaaatatc ttctttaatt taggctcaag caggccttcc agagcggtcc
      421 ttaaatcatt aatcagctca tagataacat tgtagacgcg gatatccacc ccggtcttat
      481 ccgcctcttc cttggagcgt tcatcggtat ccacatggaa acccataata atcgctccgg
      541 aggcttcagc caggataaca tccgagacat tgatactgcc tatgccctga tggataatgt
      601 ttaatttgac ctcctcactg cttaacttct tcaaagattc aataatggcc tgaagggaac
      661 cgctgacatc ggccttgagg ataagcttca attccttgac ccggccttct tttatctggt
      721 tggataaatc ctccagggac atcatcttta tcggttttaa ttccctctcc cgcagttggg
      781 ccttgcgctt tgccgccagt tccctggcct tcttttcatc gctcaaggca aaaaactgct
      841 ccccggcatc cggcaggccg gacagcccca agacctctac cggggtagaa ggaggggcct
      901 cccgcaccgg ctttccatat tcattaaaca ttgcccgcac cttggcgcaa tacggcccgg
      961 caataatcac atcttggacc cgcagggtgc cgttttccac caaaagggtg gctaccggcc
     1021 cccggccttc agtgaccttg gcctccagga ccacgccact ggccggcttt agcggatcag
     1081 cctttaactc cagcatctcc gcctctaata aaatcatctc taagagttca tctattccct
     1141 gaccggtctt agctgaaacc ccgacgctaa tggtcttgcc tccccagtct tcagcagcca
     1201 ggccaagttc cgacaactgt ttcttaagca tgtccacatt ggtctgggac ttatcaatct
     1261 tgttcatggc cacgataatg gcggcctggg catccttggc atggtcaata gcctcaattg
     1321 tctgcggcat taccccgtca tccgcggcca ccaccaagac cacaatatcc gtgaccttgg
     1381 cccctcttgc cctcatcgcg gtaaaggcct catggcccgg ggtatccaga aaggtaatct
     1441 tgccgtgagc caggcttacg gaataagcgc cgatatgctg ggttatgccg ccgtattcag
     1501 tatccgccac cttggacttg cggatggcat ccagaagcga ggttttacca tggtcaacat
     1561 ggcccataaa ggtaactatc ggcggcctgg gtttaagttt taaagggtcg tccgcctcgt
     1621 gcgccttaaa aagcaattct tcttcggtag gcttcctctt aattttatag ccgtatcctg
     1681 aagctattct tagcgccaat tcctcggaaa ccgggaaatt aagattagcc aggagtttat
     1741 gctcaataag cagttttttg attataacgg ccggcttttc ccccagggca aaagccagtt
     1801 ccttaagcat taccggaata tctatctcaa cgattttttc ttggggaaca ctcacaacct
     1861 ctgctgccgc ggcaggaccc ttgacttcag gggcagtaat tgattctttg gctggaggga
     1921 taatctttag ttggtctgct tgaggttttt ccgcaggctt gacaaccgcg ggagcttctt
     1981 tcttaacccg cggtttcctt accgcaaccg cctttttcac cccgatagac ctctccttag
     2041 cctgcgacag aggtttaacg gggtgaaccg cttttggttt agccttggcc tttggggcct
     2101 tcttcaccgt cttggtctta gaaaccgcgg cttgggctat atgaagccca accacggcct
     2161 tctggccagc ggcttgggct atatgaagcc caaccacggc cttctggcca gctgattttg
     2221 tttttacatt tttttctgac ataatctatc acatccttat tctatttaat caattttttg
     2281 gcctctttga tcagcttgcc cgcctttacc ttgccaatcc cttttatccc ggccaaggcc
     2341 tccgcttgcg cgttagccac agcctccaca tcggcaaacc cggacgctat aagcaattcc
     2401 ttggtctttt ctcccacccc cggcagctgc tccagagata aaaccggctc ttgggaggct
     2461 tcttcagcgg cttcttgagg cttctccgca agcgcctcct tcggctcgcc tatcggcgaa
     2521 gccaatgggc taagcatttc ccgggcgtat tcttctttgg tgcgcacgtc taagttccag
     2581 ccggtcaact tagaggctaa gcgcacattt tggccgtgtt tgccaatagc caatgacaac
     2641 tgatcctgat tcacaatcac cgttgccttt ttattctctt tattcagctt tatctcggat
     2701 atctgggccg gagaaaggct ggcggcaata tagctatggc tgtcctcgct gtaacggaca
     2761 atgtctatcc gctcgccgcg caattcatta acgatgttct ttaccctggc cccgcgcatc
     2821 cccacgcagg aacccacgga gtcaaccttt tcgtctttgg accataccgc tatcttggtc
     2881 ctttccccgg gctcacggga gatagccttg acctccacta ttccttcata tatctccggc
     2941 acctccaaat caaagagctt cttgacaaaa ttaggatggg aacgggaaag caggatctgc
     3001 ggccccttag cctcttttct tacctctgcc agataggcgc tgaccctctg gccctggcga
     3061 aattcatccg aagggatctg ctcccgttta gacaggacgc cttcagcctt gcccatcagg
     3121 tcaacaataa cattaccctt ctcaaaacga taaaccgtgc cgctgataat ctggccgacc
     3181 ttagcgttaa attcattaaa gattacatcc ttttccgcct cgcgtatctt ctggataatc
     3241 acctgcttgg cggtagaggc ggcaatcctg ccgaagtccc gggatttaat ctcctcaccc
     3301 ccggaaaagg ccttaatctc cccggtctgg cggtccagga ctaccttaac ttcatccccc
     3361 ggatttatac ccgccgcttt tcttaccgcg ctggctaatg ccaattccac cgcttcaata
     3421 aggatatcct tcttgatacc cttttccctc tccatatgct ctaaaaccga caacaattct
     3481 ccattcatca gatcacctgt tttgccttct ttattttggt taacgataat ttgactgttc
     3541 tttcatccgc cttcaataat aaacaatcgt ccttgactgc ctcaacttcc cctgctaatt
     3601 ccagcctccc ctcctggggt tcattcagaa aaatcctgac catcctgccg cgaatcctca
     3661 aaaagtcctt cccgctaaat agcggccggt caacgccggg ggaagaaacc tccaagacat
     3721 aactctcccc tcccaggatg tcccgctcat ccaataaacg cccgatctct ccattcaacc
     3781 gggaacattc ctccaggctg attccgcctt caggcttatc caccaggaaa cgcaagataa
     3841 atctccgatt agcccggatc aacctcaaat ccacaatctc aaaacccgcg ccctcaatga
     3901 cagggccggc agtttctctt atcttttcta atatttcttc gttatgatac cccatcataa
     3961 aaagtcaaaa gttaaaacgc aaaagtcaaa actacaagta aaaactaaaa agtttggtaa
     4021 taattcagcg tttggaaata atttgtcatt cagactgtgt cataatgtca tcctgaccct
     4081 gagcgcaagc gaaggggaag gatctcgttt tttaaattac cgacgagatt cttcggtcgc
     4141 tcgcaatgac gacaaaacac ttttcacagc ttcagttgtt acaaaagttt tgacttttga
     4201 attgtagttt tgcattttga cttttgagtt ttgacttttc ttattttcct gtttcttctc
     4261 taatcttgcc taccgcctgt tcaatgctca ccagctctac tgacttatcc tttctcctct
     4321 ggatctccag cttattctct ttaagattct tcggcccgat aacaattctt aaagggatac
     4381 cgattaaatc cgcgtcgtta aacttgaccc ccgaacgctc atcccggtca tccagaagcg
     4441 tctccaggcc taagtccgtc aattcccgat acagtttaaa agcggtgtcc ctggtctggg
     4501 cgtcgctgat atttagcggc aggataatgg cgtcaaaagg ggatatctct ttcggccaga
     4561 taatcccgtt ttcatcatga ttggtctcaa tcaccgccgc caccatccgg gaaaccccga
     4621 tgccataaca gcccataatc atggccttgc gctttccatt ctcatcagta aaaagagcgg
     4681 aaagcggctg ggaatatttt gtccctaatt taaaaatatg gccgatctca atggccttct
     4741 tctcctgcgt gtccgaagag catttagggc atttatctat ccgggcagtt gccgcgtgat
     4801 tacaccccgg acagacaaag acgctgtctt ctccggattc tgccggcgcc ataaattcat
     4861 gggaaacctt gcctcccatc actccggaat ccgcctccgt aatcagacaa ttcaggcccg
     4921 cgcgcgcgaa tatcttcaaa taagcgtcat acatcaaacg gtaattcttc tccaggccct
     4981 cttcatcggc gtcaaagcta taggcgtcct tcattataaa ctcacagccg cggatcaggc
     5041 cgaaacgggg gcggatctca tcccggaact tgctctggat ctgataaaga ataaacggaa
     5101 gctgtttata agaattaata tttcccgcgg ccagatgggt aattatctct tcatgggtgg
     5161 ggcccaggca catcttcctg ccccggcggt caataaaacg gatcattatt tcttccatca
     5221 ggctgttcct gccggtggta tcccagagct cctggggctg taaggcaggc agtaaaagtt
     5281 cctgggcgcc tttggcattc atttcctgcc ggactatcct ctgaatatta ttcaagacct
     5341 taaggcccaa aggaagatat gaatacaccc cggcaaccag catccgcgta agcccggccc
     5401 ttaacataag cttatgggcc gcggtctcgg cctcttgagg agcatccctt aatgtcggga
     5461 taaaactctt agtccacagc atttttactc gcttcgctcg taaacgctga actacgctga
     5521 acatgacgca gaactacgca atacagctta tgcgtggttc cgcatatagt tccgcgaaag
     5581 ttcagcgttg ttatttgaat atctcctcgc ttaactccac tccccgcttc ttaaaccggt
     5641 taaagaataa agggacaacc ccgtgattct tccaagagcc gatgaccctg ccgtcagtta
     5701 ccttctctat ctcatatgaa aatagatcct gcaggactaa ttcttcattc tccaggcccc
     5761 tgacctcggt aatatgggta atcttgcgcg aaccgtcggc aagctgttcc tgatggacaa
     5821 tcagattaag gctggaggca atctgcttct tgatcgccca catcgggatg tttaccccgg
     5881 agataaggat catcgtctca atcctggaga tcacatcctg gggggaactg gcgtgaagga
     5941 ctgccagcga gccgtcgtgg ccggaacaca ttgcctgcag catatccagg gcctccgcgg
     6001 aacggatctc tcccaggatt atcctctccg ggcgcatcct taaagcattc cgaaacaggt
     6061 cccggatggt aatctctcct cttccttcaa tatttcccgg cttggcctcc agggtcacca
     6121 catgctcctg attcaatttc agttccgcgg tatcctcaat agtgataatc cgttcatcag
     6181 gcgaaatata agaagataga atatttaagg tcgtggtctt gccgcttccg gtggccccgg
     6241 aaaatatgat atttaacttt gcctttatgg ccgcggtcag gaaatccgcc atattcctgc
     6301 ttaaggtgtc cttagccgcc aaatcctcca cgctgccaaa ttccttcagg aatttacgga
     6361 tagtcattac cggtccatgc agcgaaagcg gagggataat tatattcacc cgtgagccgt
     6421 cgggcaaaga aacatcggta aagggggtca tctcatccac atgcctgcgg gtaggggcga
     6481 gtattttttg gattatgtgc atcaggtgct gattattctc aaaagccacc tctgaaagta
     6541 ttttcttgcc gcctttctca atatacacct tatgcggccc gttgaccatt atctcggtaa
     6601 tgcccttatc ttcaagcagg gcctttaaag ggccaagccc caggaattcg ttaaccaact
     6661 cttcaataat tttagcggat acggcttcct caattttaag atggtctttc aggcacaact
     6721 cttcaataat ccggcggata acataacgca gatggttctc gtctgttttt tccccgctaa
     6781 agatatggct ttgctcccgg atcgttttgc gaatcttatc ttttagttcc tgggacatag
     6841 cgcttccatt cctttaatag ctcatttacc gcttgatcaa aagggacttt tcttaagggt
     6901 ttggcatcct tgtaaatcag gccttcattc ctgccaaagg ctatggccag gtccgcgtcc
     6961 tctgcctctc ccgggccgtt aaccacacag cccattaccg ccagctttac cggcctatcc
     7021 agcagactgg cgttagaggc gtcaaaaacc ctccggtaaa gctcattgac tatcgcttct
     7081 atatttgcct cggtcctacc gcaggccgga cagctgataa tc
//
LOCUS       DATDUB010000028         8188 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1186280, whole genome shotgun sequence.
ACCESSION   DATDUB010000028 DATDUB010000000
VERSION     DATDUB010000028.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 8188)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8188)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8188
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1186280"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(126..683)
                     /gene="pyrE"
                     /locus_tag="VJA84_00535"
     CDS             complement(126..683)
                     /gene="pyrE"
                     /locus_tag="VJA84_00535"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: protein motif:HMM:TIGR00336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004588 - orotate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HLD40644.1"
                     /translation="MSEINKLREELLKLLKKEALRVGEVVLSSGATSSFYLDGRCVTL
                     NAKGAYLSARLILDLLKDEKIEAVGGPTLGADPIAGAVAAVSYLRKRPLKTFIIRKTP
                     KAHGARRQIEGPSLKKGSRLILVDDVATSGTSFLESIDILRSEGFQVDTAVCIVDRQE
                     GAKEALAQKDCRLLSIFTPRDFGIK"
     gene            776..1438
                     /locus_tag="VJA84_00540"
     CDS             776..1438
                     /locus_tag="VJA84_00540"
                     /inference="COORDINATES: protein motif:HMM:NF012383.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComF family protein"
                     /protein_id="HLD40645.1"
                     /translation="MIKAVTGIIYPLRCLICRQKLEPAGFNDFICQSCLKKIVPNTPP
                     FCRQCGRERVYFDRAISACAYEGVIKEIIHSFKYRHKIKLGGFLAGLMLDFIREYHLP
                     LTQCDCIIPVPLSLTRLREREFNQAQIIAAKISESLQIPLLNNALTRVRHSRPQAQLS
                     REERLHNLKGAFAALDKKDLNGKDILLIDDVLTTGATASEAARALKEAGVNSVFVFTA
                     AG"
     gene            1527..2645
                     /locus_tag="VJA84_00545"
     CDS             1527..2645
                     /locus_tag="VJA84_00545"
                     /inference="COORDINATES: protein motif:HMM:NF015684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HLD40646.1"
                     /translation="MKILRTYLLKEFSLPFVFSLIVLIFVMLLGNLFQLIELIITKGV
                     NFFSVAKLFLFLVPYLLTYTIPIAILAAVLLSLGRLSSDNEILAIRASGINIFILIVP
                     LLILGLLLSLFLVILNDRIIPLAHYASRRTLIEIGIKNPTAAIEPGTFIDSFQNYVLF
                     VYSIERNKQTGERNILNNVRIYEPQGKDKPTRTIVAKKGEFVSIPEKKVVKLKLSDGT
                     SDEPDPNKPGEFFKLNFKTYFLTLSLDKAEGTGQIEKKPKDMTIKELKEQITEYSSEG
                     IDTLPLITHLHQKIALAFSALVFILVAAPMAVITHRREKAVNFGLAILIILVYYLLLI
                     GFESLSLQGYFPPVVSIWMPNIIFGLIGSCLIFRLCVS"
     gene            2615..3727
                     /gene="lptG"
                     /locus_tag="VJA84_00550"
     CDS             2615..3727
                     /gene="lptG"
                     /locus_tag="VJA84_00550"
                     /EC_number="7.5.2.5"
                     /inference="COORDINATES: protein motif:HMM:NF015684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015221 - lipopolysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015920 - lipopolysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter permease LptG"
                     /protein_id="HLD40647.1"
                     /translation="MFNLQAMRLLDRYILKSVLAVFLGCFFAFVFLYIIADFISRLDD
                     ILKHHISFSLIFSYYLHSLPVMLTQTTPLAMVLASIYTFGRLNHNNELIVIRSSGLSL
                     WQICLPVLTCGILVSASMLVVNEKVIPYSRMESEKIKAQLEGESKAVSKEAVLNNLTF
                     YGLENRLFFINSFDAKNGSMEGITILEHDRLQNLTAKITAKRGLYKDKLWIFYECTRL
                     NFDLEGHISENSAYSEEGIMEISETPQDFLQQRKRAELMSSNQLKDYIRKLKKSGASG
                     AVKSLLIDLYQRYASAFTTLALMLLGIPFSFVIRKRANIFTSLVTAFAMSFLYYVLNG
                     ISLAIGKAGFLLPSLSCWLVPIASSILALRLIRRTA"
     gene            complement(3724..4842)
                     /gene="alr"
                     /locus_tag="VJA84_00555"
     CDS             complement(3724..4842)
                     /gene="alr"
                     /locus_tag="VJA84_00555"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR00492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008784 - alanine racemase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HLD40648.1"
                     /translation="MPEHYRPAWAEINLGNLDHNFHLVRKLVGAGVKILVPVKADAYG
                     HGIIAVSKRLEKLGVDYLGVASIDEGIILRKNGIKKPILVLSPIFPDGAEAVLRHNLI
                     PAVCAWELALKLDGEAARRKQKAVIHIKVDTGMHRIGIAHHSARLFIRQVSRLKNIFV
                     EGIFTHFPCADNNPAFTRQQIGMFEDLIRQLEKEGIHIPLKHAANSLGVLDYPAGHFN
                     MVRPGLIVYGLSPRDRLRHKLLPVLSLKTRIAYVKAVDKGKGVSYGHTFVTALKTRIA
                     TLPVGYGDGYPRSLSNKAFCLIGGKRVRIVGRICMDQMMADVTNIRDVKTGQEAVLIG
                     RQKAEAISAEELAKLAGTIPYEIVCNLGQRIPRVYRKG"
     gene            complement(4842..5564)
                     /gene="tsaB"
                     /locus_tag="VJA84_00560"
     CDS             complement(4842..5564)
                     /gene="tsaB"
                     /locus_tag="VJA84_00560"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: protein motif:HMM:TIGR03725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003725 - double-stranded RNA binding
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     dimerization subunit type 1 TsaB"
                     /protein_id="HLD40649.1"
                     /translation="MNILAIDTSSKYLSLVIARDECILFRFFGPLGRELSAKLVPIID
                     SSLKKAKLSLKSIDYFGVGLGPGSFTALRIGLSAMKGLVFPFNKPIAGISSLDVLARS
                     VKSVAAAFMPLTKEETICPIVDARRGLLYCAFYHLKNGRLSRKSRYLLIPAEDLITRL
                     SSRRRTIFLGDGIPLYRQYIKKMLGGNAEFAKEDTWYPLPENLLACVREKIRAGKLTD
                     SYRLAPVYLYPKECQIGSIIRK"
     gene            complement(5819..7978)
                     /gene="recG"
                     /locus_tag="VJA84_00565"
     CDS             complement(5819..7978)
                     /gene="recG"
                     /locus_tag="VJA84_00565"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: protein motif:HMM:NF008168.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HLD40650.1"
                     /translation="MEANPNAGLFLWTVYPGYCIIAIVNDLSAIDIRYLKGVGPKRAG
                     LFNKLGVYFVEDLFYYFPRRYEDRSRISSISRLRIGESQTVRVRILRTYERRSFKQRN
                     LSVFEALVEDTTGRMPCVWFNQPYLRNYLKAGTEVVLYGRPAIHGKSFQMQNPEYEIV
                     EDDKHAANLNYGRIVPVYSLTEELSQRMFRRLIRACLDEYLPRMSEILPYDIRKRNNL
                     LNIASSILNMHFPQDAASQGRAYKRILFEECFLLQLIFGLKRQKGAKVKGTSHRIEED
                     LLARFEDSLPFKLTSSQKRVIQEIRADMSLPKPMHRLLQGDVGSGKTIVALYACLIAA
                     SNGYQSAFMAPTELLAEQHYQNISSQLSAFSCQGRALQVRLLVSATPKKEKEKILKDL
                     KSGEIDILVGTHALIQMGVEFKNLSLAVIDEQHKFGVHQRLSMLAKGSNPDCLIMTAT
                     PIPRTLAMVIYSDLDVSTLDELPAGRLPVKTCLVQEEKRQWVYDFARRNIKEGRQAYI
                     VYPIIEESENLDLKSAVSMYEELSQDVFKEFKVELIHGRLKPQKRSRIMRSFKEGKTD
                     ILVSTVVIEVGVDVANASVMVIEHAERFGLSQLHQLRGRIGRGQYESHCILIGSPDSQ
                     EAGLRLKAMVEENDGFKIAQRDLELRGPGEFFGVRQHGLPELRVNPLEDIEQLHIAKQ
                     EAESLLKLDPALELKPNQGLSSVLRSRFPDYDKLSQA"
     gene            complement(8009..>8188)
                     /locus_tag="VJA84_00570"
     CDS             complement(8009..>8188)
                     /locus_tag="VJA84_00570"
                     /inference="COORDINATES: protein motif:HMM:NF013625.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-binding domain-containing protein"
                     /protein_id="HLD40651.1"
                     /translation="AGLYEGEVDGKIGPKSKKAIEEFQAKNNLTVDGKVGRRTWEKMK
                     EYLNMAAVASPEVGN"
BASE COUNT         2086 a         2246 c         1768 g         2088 t
ORIGIN      
        1 ctatttcgag attcgatttt taaagtgtca ttgcgaggca cgaagtgccg aagcaatccc
       61 gtcgcaagag attgcttcgc ttcgctcgca ataacgctaa ttaggacagc aatgtgttca
      121 aataactact tgattccaaa atcccgaggg gtgaagatag aaagtaaccg gcagtctttt
      181 tgggccaggg cctcttttgc cccttcctgg cggtcaacaa tacagacagc cgtatccacc
      241 tggaagcctt cagagcgcag gatgtctatt gactccagga aggatgttcc ggaggtagcc
      301 acatcatcaa ccaggattaa ccgggagccc ttctttaaag aagggccttc aatctggcgc
      361 cgggcgccgt gggccttggg ggtcttgcgg ataataaagg tcttcagcgg ccttttccgg
      421 agatagctta ccgccgccac tgccccggca atagggtcgg cccctaaagt cggccctccc
      481 accgcctcta tcttctcgtc cttcaaaaga tccaggatca ggcgggccga taaatacgca
      541 cctttggcat tcagggtcac acagcggccg tcaaggtaaa aagagctggt cgcccccgaa
      601 gacaggacaa cctctccgac acgcaaggcc tccttcttca acaatttcag caattcttct
      661 ctaagcttat ttatctcact cataatttta ttattttacc ccgcaaaaga aagcctgtca
      721 agcatttgac aagagggttt tttgttgtta tacttgtttt tctatgatac cagcgatgat
      781 taaggccgta accggaataa tttatcccct gcgctgcttg atctgccggc agaaacttga
      841 gccggcaggc tttaacgatt ttatctgcca gtcttgccta aagaagatag tcccgaacac
      901 ccctcctttc tgccgccaat gcggccggga aagggtatat tttgaccggg caatctctgc
      961 ctgcgcttac gaaggggtaa tcaaagaaat catccacagc tttaaataca ggcacaagat
     1021 aaaattaggc ggttttctgg ccgggctgat gctggacttt atccgggagt atcatctgcc
     1081 gcttacccaa tgcgattgca taatccctgt cccgctttct ttaaccaggc taagggaaag
     1141 ggaatttaac caggcccaga taatagccgc gaagatctcc gagagtctcc aaatccctct
     1201 cttaaataac gcgcttaccc gcgtccgtca cagccggcca caggcgcaat taagccggga
     1261 ggaacgatta cataatctta aaggggcatt cgcggccctg gacaaaaaag acttaaacgg
     1321 caaagatatc ctgcttattg acgatgtcct gactaccgga gccaccgcct ccgaggcagc
     1381 cagggcatta aaagaagccg gggtaaactc ggtattcgtc tttaccgcgg cgggataata
     1441 tgaatcccgc accttcttat aaaagttttc aggaataaag gtatgaatat acagattaca
     1501 ttgatgaata atgaagaagg tgcgggatga aaatactgcg cacctattta ctgaaagaat
     1561 tcagcctccc cttcgtcttc tccctgatag tactcatctt tgtgatgctt ttaggcaacc
     1621 tctttcagct tattgagctg attataacca agggagtgaa tttcttcagc gtggccaagc
     1681 tgtttctctt cctggtccct tacctcttga cctacaccat acctatcgcc atcctggccg
     1741 cggtcctgct ttctctgggc cggctttcct cggacaacga aatcctggct atccgggcca
     1801 gcgggataaa tatcttcatc ctgatcgtcc cgctcttaat cctggggcta ctgcttagcc
     1861 tgttcttagt aatcctgaat gaccggatca tccccctggc ccactatgcc agccgccgga
     1921 cactgataga gataggaatc aaaaatccca ccgcggccat tgagccgggg acattcattg
     1981 actccttcca aaactatgtc ctctttgttt attccataga gcgcaacaaa cagaccggcg
     2041 aacgcaatat cctgaataat gtgcgcatct acgaacccca gggcaaagac aaacccaccc
     2101 ggactatcgt agccaagaag ggcgaattcg tctccatccc ggaaaaaaaa gtggtcaagc
     2161 taaagttgag cgacggcacc tccgatgagc cagaccccaa taaacccggg gaattcttta
     2221 aactcaattt caagacctat ttcctgaccc tttcattaga caaggccgaa ggcaccggcc
     2281 agatagagaa gaaacccaag gatatgacga tcaaagaact taaagagcag atcactgaat
     2341 attcctctga aggcatagac accttgcccc tgatcaccca cctgcatcaa aagattgccc
     2401 tggccttttc ggccctggtc tttatcctgg tggccgctcc tatggcggta atcacccacc
     2461 gccgggaaaa ggcggtgaat ttcggactgg ccatcctgat tatcctggta tattacctgc
     2521 ttttaatcgg gtttgaatcc ttaagcctgc agggatattt tccgccggtg gtttccatct
     2581 ggatgcccaa tattattttc ggactgatcg gtagttgttt aatcttcagg ctatgcgtct
     2641 cttagaccgc tatatactca agtccgtgct ggccgtgttc ctgggctgtt tttttgcctt
     2701 cgtcttcctc tacataatag ccgacttcat cagccgctta gatgatatcc ttaaacacca
     2761 cattagtttt tccctgattt tcagttacta tttgcactcc ctgccggtaa tgcttaccca
     2821 gaccaccccc ctggctatgg tgctggcatc catatacacc tttggcagac tcaaccacaa
     2881 caatgagctg attgtcatcc gttccagcgg attgagcctc tggcagatct gcctgccagt
     2941 cctcacctgc ggcatcctcg tctcggccag catgctggta gtcaacgaaa aggtcatccc
     3001 ctattcccgg atggaatcgg aaaagataaa ggcccaattg gaaggagaga gtaaggctgt
     3061 ctctaaagag gccgtgctca ataacctcac cttctacgga ctggagaacc gcctgttttt
     3121 catcaattct tttgacgcca agaacggctc aatggaaggg ataactatcc tggagcatga
     3181 ccgcctccag aacctcaccg ctaaaataac cgccaagcgc gggctttaca aagacaagct
     3241 ctggatattc tacgaatgca ccagattgaa ttttgatttg gaagggcaca tatccgaaaa
     3301 cagcgcctac agcgaagaag ggattatgga gatcagcgaa accccccagg actttctcca
     3361 gcagaggaaa cgcgccgagc tgatgagttc aaaccagctt aaggactata tccgcaagct
     3421 gaaaaaaagc ggggccagcg gcgcggtaaa gagcctgctc atagacctct atcaaagata
     3481 cgcctccgcc ttcaccaccc tggcccttat gctcttaggc ataccctttt cctttgtgat
     3541 ccgcaagcgg gccaatatct ttacttcctt agtaaccgcc ttcgcgatga gttttcttta
     3601 ttatgtcctt aacgggataa gcttagccat aggcaaagcc ggtttcctcc tcccatcctt
     3661 atcctgctgg ctggtcccga tagcctcatc catcttagcc ctgcgcctca tccgccggac
     3721 cgcttaacct ttcctatata cgcgggggat gcgctggccc aaattacaga caatctcgta
     3781 gggaatagtc ccggcaagct tggccagctc ttcggcgctt attgcttcag ctttctgccg
     3841 tccgatcagg accgcttcct gcccggtttt gacatccctg atgttagtta catccgccat
     3901 catctggtcc atacaaatcc tgccgacaat ccttaccctt tttccgccaa tcaggcaaaa
     3961 agccttattg gaaaggctgc ggggatagcc gtcgccgtag cccaccggca aagtggcaat
     4021 ccgcgtcttc agggcagtaa caaaggtatg gccatagctt acccccttgc ccttatccac
     4081 agccttaaca taggcgatcc tggtcttcag gctcaagacc gggagcaatt tatgccttaa
     4141 cctgtcccgg ggagacagac cgtagactat aagcccgggc ctgaccatat taaaatgccc
     4201 ggcgggataa tccagcaccc ccaaactgtt agcggcgtgt tttaagggga tatgaatccc
     4261 ctctttctct aattgccgga tcaaatcctc aaacatccct atctgctgac gggtaaaggc
     4321 cggattattg tccgcgcagg ggaaatgggt aaatatccct tcaacgaaaa tattcttaag
     4381 cctggaaacc tgccgaataa atagcctagc gctgtgatgg gctatgccaa tacggtgcat
     4441 cccggtatcc accttgatat gaataaccgc cttctgtttt cttctcgcgg cctcaccatc
     4501 cagctttaag gccagttccc aagcgcagac agccgggatt aaattatgcc ttaacaccgc
     4561 ttctgccccg tcagggaata tggggctaag cacaaggata ggctttttaa tcccattctt
     4621 acgcaggatt atcccctcgt ctatgctggc caccccaaga taatccacgc ccaatttttc
     4681 caatctctta gaaacagcga ttatgccgtg gccataggca tccgccttta ccgggacaag
     4741 gattttaacc cccgcaccca ccagcttcct gaccaagtgg aaattatggt ccagattccc
     4801 cagatttatc tcggcccagg ccgggcggta atgttcaggc attactttct tattatactc
     4861 cctatctggc attccttggg atacaaatat accggcgcca gtctatacga atcggttaat
     4921 ttgccggcgc ggattttctc tcggacacag gccagaagat tttccgggag aggataccag
     4981 gtgtcctctt tagcaaattc ggcatttccc cccagcattt tcttaatata ctgccggtat
     5041 aaagggatgc cgtcacctaa gaatatcgtc ctcctccggg aacttaacct ggttatcaga
     5101 tcctccgcag ggattaaaag ataacggctc ttccgggaca gccttccatt cttaagatgg
     5161 taaaaagcgc aataaagaag accacgtctg gcatccacaa tcggacaaat tgtttcttcc
     5221 tttgtgagcg gcataaatgc cgccgctaca gattttaccg aacgcgccaa cacatctaag
     5281 ctggagatac cggctatcgg cttgttaaag ggaaaaacta atcccttcat tgccgaaaga
     5341 cctatcctca aggcagtaaa agagccgggg cccagaccaa cgccaaaata atctatactt
     5401 ttcagagaaa gctttgcctt ctttagcgaa ctatcaataa taggaaccag tttagccgaa
     5461 agctcccggc ccaaaggccc aaaaaatctg aacaatatac actcatccct ggcaataact
     5521 aaagaaagat atttagaaga ggtatctatg gctaagatat tcatttgcat aaaataaagg
     5581 gtctatagtc aatagtctat ggtctatcta tcgactatcg accattgacc atcgaccctt
     5641 tattaattat cattgctgtc ctaattagcg tcattgcgag agaagagaag caatctcttg
     5701 cggcgggatt gcttcggcac ttcgtgcctc gcaatgacac tttaaaaatc gaatctcgaa
     5761 atagtgtttc cgtcagagac aatgtcataa tttggacatg tctgattaat tatatattct
     5821 atgcctgcga taatttatca taatccggga acctggacct taatacggag gaaagcccct
     5881 gattcggctt gagctccagg gcagggtcaa gcttaagcag gctctcggcc tcttgcttgg
     5941 caatgtgtaa ctgctcaata tcttcaagcg gatttacccg cagttccggc aggccgtgct
     6001 gtctgacccc gaagaattcg cccgggccgc gcagttccaa gtcccgctgg gcaattttaa
     6061 aaccgtcgtt ttcctcaacc atagccttca gcctaagacc tgcctcctgg ctgtccggac
     6121 tgccgataag gatacaatgc gattcatact gccccctgcc gatcctgccc ctaagctgat
     6181 gcagttgaga cagtccaaac ctttcggcat gctcaatcac catcaccgag gcattagcca
     6241 catccacacc cacctcaatt accaccgtag agaccaggat atccgttttg ccttctttaa
     6301 aagagcgcat tatccggctt cttttctggg gcttaagcct gccgtgaatc agctcaacct
     6361 taaattcctt aaagacatct tgacttagct cctcatacat actgactgcc gacttcaaat
     6421 ccaggttttc agactcctca attataggat agactatgta tgcctgccgg ccttctttta
     6481 tattccggcg cgcgaaatca tagacccact gccgcttttc ttcctggacc agacaggtct
     6541 ttaccggaag cctgccggca gggagttcat ccaaagttga gacatccaga tccgaatata
     6601 tcaccattgc cagggtgcgg ggaatagggg tggcagtcat aatcaaacag tccgggttac
     6661 tgcctttagc cagcatactt agcctctgat gcaccccgaa cttgtgctgt tcatcaatca
     6721 ctgccaggct tagattctta aattccaccc ccatctggat aagggcgtgg gtgccaacta
     6781 aaatatcaat ctccccgctc tttaaatcct tgaggatttt ttccttctcc tttttagggg
     6841 tcgcgctgac cagtaatcta acctgcaaag cgcgcccttg acagctgaag gctgaaagct
     6901 gagagctgat attctgataa tgctgttcag ccaaaagctc ggtaggggcc ataaacgcgg
     6961 attgataccc gtttgaggcg gcaataagac aggcatacaa ggcaactatg gtcttgccgg
     7021 agccgacatc tccctgcaat agccgatgca tcggctttgg caaagacata tccgctctta
     7081 tttcctgaat gacccttttt tgagaagagg tcagcttaaa aggcaggcta tcttcaaacc
     7141 tggccagcaa atcttcctct attctatggc ttgttccctt aaccttcgcg cccttctgcc
     7201 tttttaggcc aaagattaac tgtaaaagga aacactcctc aaagagtatc cttttataag
     7261 cccggccctg gcttgcggca tcctggggaa agtgcatatt caggatactg cttgcgatat
     7321 tcaggagatt attccttttt cttatgtcat aaggaaggat ttcactcatc cgcggcaggt
     7381 attcatctaa gcaggcccgt ataagccgac ggaacatcct ttggctcaat tcttcggtta
     7441 aagaatatac cgggacaatc ctgccgtaat taagattagc cgcgtgttta tcatcctcaa
     7501 caatctcata ttcagggttc tgcatctgga aggattttcc gtgaatggcc ggcctgccgt
     7561 aaaggacaac ctccgtcccg gctttaagat agtttcttag atacggctga ttaaaccaga
     7621 cgcagggcat ccttcctgta gtgtcctcca ccaaggcctc aaagacgctc aaattcctct
     7681 gtttaaagct tcggcgttca taagtccgaa gtatcctgac ccggacagtc tgggattctc
     7741 ctatgcgaag ccgggaaata gaactgatcc ggctgcggtc ttcataacgg cggggaaaat
     7801 aataaaacag gtcctcaaca aaataaacac ccaatttatt aaagagcccg gccctttttg
     7861 ggcctacccc tttaagatat cttatgtcta tagccgagag gtcattcact atggcaatta
     7921 tacaatagcc cggatagact gtccacaaaa acaaacccgc gttgggattt gcttccaacg
     7981 cgggctgaac aatggaacca atgacggttt aattccctac ttccggggag gcaaccgcgg
     8041 ccatattaag atattccttc atcttctccc aggtcctgcg tccgacctta ccgtcaacag
     8101 tcaaattgtt cttggcctga aattcctcaa tcgccttttt gctcttaggc cctatcttgc
     8161 cgtcaacctc tccctcataa agcccggc
//
LOCUS       DATDUB010000029         3775 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_684953, whole genome shotgun sequence.
ACCESSION   DATDUB010000029 DATDUB010000000
VERSION     DATDUB010000029.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3775)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3775)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3775
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_684953"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..587)
                     /locus_tag="VJA84_00575"
     CDS             complement(<1..587)
                     /locus_tag="VJA84_00575"
                     /inference="COORDINATES: protein motif:HMM:TIGR04076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0046500 - S-adenosylmethionine metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR04076 family protein"
                     /protein_id="HLD40652.1"
                     /translation="MVETPFPRLRLTVNKVGGHCYHNYKLGDVLILEDFTHPPEHFCL
                     GLAHVLFPAVYALSWGARFPFMENQRSLLITCPDGGKLEFKAEILDKEGKIEFIPKDL
                     EHKGPNPKKMVVEVAQCTGKCFYGYKLGQKWETRGLATIPNFCGAAFHTMFPALFTLN
                     FGGQFWFMKDPDCIDTVTCPDGGHVVFKVSRAKEE"
     gene            complement(701..1705)
                     /locus_tag="VJA84_00580"
     CDS             complement(701..1705)
                     /locus_tag="VJA84_00580"
                     /inference="COORDINATES: protein motif:HMM:TIGR00745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketopantoate reductase family protein"
                     /protein_id="HLD40653.1"
                     /translation="MKIAVIGSGAIGGLVAGYLKHRKEDVFLVGRGKAVEAIAKDGLH
                     ISGVRGNIDVRVDAFHKLEQKADLVILAMKTQDLEKFLKDNPLYLKDALVLTTQNGIQ
                     AEKILAHHIRKDKIISSIVMFGSTYTEPNNITHNFDGKWIIGRLFGENDAKLQEVAAV
                     LNRIFPVVLSNDILGMKWLKVFVNANNCLPAILGKSMQETFKRLGACRISIAIWKEGL
                     ELTRRTETKLASLPDFPLERAEKLTAMPVEEAAKIFSGIMTNLSRQPLYGSILQSIKR
                     GKPSEIDYINGEFVRLAKGFGLSAPLNNKLVNLVHKVERTKKFLSLAELTEETKEFLQ
                     "
     gene            complement(1711..1983)
                     /locus_tag="VJA84_00585"
     CDS             complement(1711..1983)
                     /locus_tag="VJA84_00585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40654.1"
                     /translation="MNWDSHTQEKFKLMISRMPVFHRRIAEEAVTQKAQENALERGAA
                     SVSEADVISALFSDVPKPFYSLMIRLLEDVGFDYRKYGFPKDANSR"
     gene            complement(1980..3524)
                     /locus_tag="VJA84_00590"
     CDS             complement(1980..3524)
                     /locus_tag="VJA84_00590"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I adenylate-forming enzyme family protein"
                     /protein_id="HLD40655.1"
                     /translation="MDVASVLINTVKKFHSRPAVIFTRLSTQGLRDPDSSGRDKTISF
                     LELYDNVFKLAQGLAKLGIGKSDKVAIYLPNWPEYIYSYLALFSLGVTVVPLDYMLTE
                     EELVSCLSHCQAKALIAKEKPIVSLTNLKDRVSSLKEMIVLEQVKTNFSNFNQVLASG
                     RPFPPQNIKIEDADPALIMYTSGTTGAPKGILLNYRHLDGSPKAMEHFVDLSDKDIKL
                     SALPLSHSGGLVYIQNCVCYGITLVLMERFQPLEFLRNIQKYKVTCFHLVPSMYYAIL
                     QLKEFESFDLSSLRWVVVFGAPSDPRSLRRFQQFCPNAHFLNGWGLTETCPPNTVIPL
                     GSKNIESVGRPAPWVEVKIFGVDDKELPQGAVGEVVIRGWVVMEGYYQDPKTTAEVLR
                     GGWFHSGDLGRFDEEGFLYIVGRKKDMIKVSGEIVYSFEVENVLLKHPAIQEAAVVGE
                     PDKLRGEIVKAFVALKKDIFASSSDIRSFCKEHLAHFKVPHDVEIRDSLPKTPSGKIQ
                     KEKLKE"
BASE COUNT          973 a         1003 c          820 g          979 t
ORIGIN      
        1 tattcctctt tcgcccggga gaccttaaac accacatgtc ctccgtccgg gcaggttacc
       61 gtatctatac aatccggatc cttcataaac caaaactggc cgccaaaatt aagggtaaat
      121 aatgccggga acatcgtatg aaaggccgcc ccgcaaaaat tggggattgt ggctaaaccg
      181 cgggtctccc atttctggcc cagcttatac ccgtaaaaac acttgccggt gcattgggcc
      241 acctctacca ccatcttctt ggggttcggg cccttatgct ccaagtcctt agggataaat
      301 tctatcttgc cctctttatc taagatttcc gctttaaatt caagttttcc tccgtccggg
      361 caggtgatta gaagcgaacg ctgattttcc ataaagggga acctcgcccc ccagcttaag
      421 gcgtagaccg ccgggaaaag cacatgggcc aggcctaagc agaaatgttc cgggggatgg
      481 gtgaagtcct ccaagattaa tacatcgcca agtttataat tatgataaca atgcccgcct
      541 accttattca ccgtaagtct taatctcgga aacggcgttt ctaccattga tctttatcct
      601 cccaagttag aagtcaataa ttacgggtcg atagtctata gccgatagtc tatttgttta
      661 ttgactattg accatcgacc attgaccctt aatcttttct ctattgcagg aattctttgg
      721 tctcttcagt caattccgcc aggctcaaga attttttagt ccgctctacc ttatgcacca
      781 gattcaccag cttattatta agcggcgcgg acagaccgaa acctttagcc agccggacaa
      841 attcgccgtt aatataatca atctccgaag gctttccgcg ttttatgctc tgcaggatag
      901 aaccgtaaag cggctggcgg cttaaattag tcataatccc ggagaaaatc ttggccgcct
      961 cctcaacagg catagcggtt aatttttccg cccgctccag ggggaaatcc ggtaaggagg
     1021 ccaatttagt ttccgtgcgc cgggtgagtt ccagtccttc cttccagata gcgatgctga
     1081 ttctacaggc ccccaggcgc ttaaaggtct cctgcatact cttgcccagg attgccggaa
     1141 ggcagttatt ggcattgaca aagaccttga gccacttcat ccccaggatg tcattactta
     1201 aaaccacagg gaatatccgg tttaaaacag cggcaacctc ttgaagcttg gcgtcattct
     1261 ccccgaacaa acgaccgata atccatttgc cgtcaaaatt atgggtgata ttattcggct
     1321 ccgtgtaagt agagccgaac atcacaatgc tggagataat cttgtcctta cggatatgat
     1381 gggccagtat cttctccgcc tggatgccgt tttgggtagt taagacgagc gcgtccttta
     1441 aatagagcgg attatcttta aggaattttt ccaggtcctg ggtcttcatt gccaggatga
     1501 ctaagtccgc cttttgctct aatttatgga aggcatctac gcggacatca atattgccgc
     1561 ggacgcccga gatatgcagg ccgtctttgg ctatcgcctc aacagctttc cccctgccga
     1621 ccaaaaagac atcctctttg cggtgcttaa gatacccggc aaccaacccc ccaatcgccc
     1681 cggaaccgat aactgctatc ttcataaata ttagcgcgaa ttagcgtctt taggaaagcc
     1741 atatttcctg taatcaaacc ccacatcttc caagagccgg atcatcaggc tgtaaaaggg
     1801 tttgggcaca tcactaaaga gagcggagat cacatcggct tccgaaaccg aggccgcgcc
     1861 gcgctccagg gcattctctt gcgccttctg ggttaccgcc tcctcggcaa tccggcggtg
     1921 aaacaccggc atcctggata tcattaattt aaatttctct tgcgtatgag aatcccaatt
     1981 cattctttca gtttctcctt ctgaatcttg ccgctggggg tcttgggcag ggaatctctt
     2041 atttccacat catgcggcac cttaaaatgg gccagatgct ccttgcaaaa agaacggata
     2101 tctgacgaac tggcaaagat atctttcttc agggccacaa aggccttgac tatctccccc
     2161 cgcagtttat ccggctcacc cactaccgcc gcctcctgga tcgcgggatg ttttaataag
     2221 acattctcca cctcaaagga atagacaatt tccccggaga ccttaatcat atctttttta
     2281 cggcccacaa tatataggaa gccttcttca tcaaacctgc ccaaatcccc gctatgaaac
     2341 cagccgccgc gcagaacctc ggcagtggtc ttagggtctt gataataccc ctccatcacc
     2401 acccagcccc ggataaccac ctctcccacc gccccttgcg gcaattcctt atcatccact
     2461 ccgaatatct tcacctctac ccagggcgcg ggcctaccca cgctctcaat attctttgag
     2521 cccaggggaa taaccgtatt cggaggacag gtttccgtaa gcccccagcc gtttaggaaa
     2581 tgggcattgg ggcagaactg ctgaaatctc cttaatgatc gcggatcgct gggcgcgcca
     2641 aagaccacca cccagcgcaa ggaggataag tcaaaactct caaattcctt aagctgcagg
     2701 atggcataat acattgaagg caccagatga aaacaggtga ccttatattt ctggatattc
     2761 cttaagaact ctaagggctg aaatcgttcc atcaacacca gggttatccc gtaacagacg
     2821 caattctgaa tgtaaaccag ccccccggaa tgcgataaag gcagggcgga gagcttgata
     2881 tccttatcgc ttaaatccac aaaatgctcc attgccttgg gcgagccgtc aagatggcgg
     2941 taattaagca gtatcccttt tggggcgccg gtagtgccgg aggtatacat tattaaggcc
     3001 gggtcagcgt cttctatttt tatattttgg ggaggaaaag gccggccgga agccaagacc
     3061 tggttaaaat tgctaaagtt agtcttgacc tgctccaaga ctatcatctc tttcaggctg
     3121 gaaacccggt ctttcaaatt agtcaaagaa actatcggct tttccttagc aatcaaagcc
     3181 ttggcctggc aatggcttaa acagctgact aactcttcct cggtgagcat ataatccaaa
     3241 ggcactaccg ttacccccag agagaataaa gccaggtagc tatagatata ttccggccag
     3301 ttaggcaggt agattgccac cttgtcggat ttcccgattc ctaatttagc caatccctgg
     3361 gccagcttaa agacattgtc gtaaagctct aagaagctta tagttttgtc tcttcccgat
     3421 gaatcgggat cccgcagtcc ttgtgtagag agtcgggtaa aaataaccgc cggacgagaa
     3481 tgaaacttct tgaccgtgtt aattaaaact gaggcaacat ccatattttc tcgcgtttag
     3541 gccgcaggcc acatagtaaa attttactat ttaactttac ttaattttaa tcccccagct
     3601 cactattgtc aaattatttt taggaaaagt tgtaaccgga cagtaaaggg gggaattttg
     3661 tcatttccca gcttgaccgg ggaatgacaa agcaacaacg acccccgctg actggttacg
     3721 aaaagtttgc gggaagatta ttccggggag atttgatgcg gactgttcac ctggc
//
LOCUS       DATDUB010000030         3173 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1523216, whole genome shotgun sequence.
ACCESSION   DATDUB010000030 DATDUB010000000
VERSION     DATDUB010000030.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3173)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3173)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3173
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1523216"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..213
                     /locus_tag="VJA84_00595"
     CDS             <1..213
                     /locus_tag="VJA84_00595"
                     /inference="COORDINATES: protein motif:HMM:NF014657.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF177 domain-containing protein"
                     /protein_id="HLD40656.1"
                     /translation="KDFRLNIAIDKSDTSIDISEDIRQEIILEYPDKPLCEETCLGLC
                     VNCGRNLNEGNCNCAPPRNPSQNLLR"
     gene            311..511
                     /gene="rpmF"
                     /locus_tag="VJA84_00600"
     CDS             311..511
                     /gene="rpmF"
                     /locus_tag="VJA84_00600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013908321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HLD40657.1"
                     /translation="MPLPKRRFSRSRTLKKRAHKIFKLGELSSCPQCHSPKHSHQVCP
                     VCGYYRGKPVLEIKVKEKKKKG"
     gene            511..1527
                     /gene="plsX"
                     /locus_tag="VJA84_00605"
     CDS             511..1527
                     /gene="plsX"
                     /locus_tag="VJA84_00605"
                     /EC_number="2.3.1.274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012546990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043811 - phosphate:acyl-[acyl carrier
                     protein] acyltransferase activity [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase PlsX"
                     /protein_id="HLD40658.1"
                     /translation="MKKIIVDAMGGDYAPKVVVEGALAAAREFPCKIALIGKEEDIRQ
                     ELKKAGGDIDSIEIINAPEVIGMGEPAALSIRKKRNSSIVKGIESLKEAKADAFFSAG
                     NTGAVVCAATIGLGMLSGVERPGIAIIIPTLKKVPTLIIDVGANIDAKPSHLLQYAAM
                     AQVYYQHIFQAEKPSIGLLNIGEEEAKGTDFLKETHKLLSDSSFNFIGNIEGRDIFKG
                     NARIIICDGFVGNIALKVSEGVAEAFGELLKREIMNSLMAKIGVLFIRNSLRRFKKHL
                     DYSEYGGAPLLGINGVVMIGHGRSSAKAIKNAIKSAVKEVESNVKEEMIESIKSVTAK
                     ADHS"
     gene            1530..2510
                     /locus_tag="VJA84_00610"
     CDS             1530..2510
                     /locus_tag="VJA84_00610"
                     /EC_number="2.3.1.180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019879480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0033818 -
                     beta-ketoacyl-acyl-carrier-protein synthase III activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase III"
                     /protein_id="HLD40659.1"
                     /translation="MTKNAGIIGLGKYLPKKRLTNRDLEKIVDTSDEWIFSRTGIKER
                     RLAAKDEATSDMAVQAAKDALKDSGIKAKKIDLIIAATISPDMPFPSVSSIVQNAIGA
                     ENSACFDLSAACAGFVYGLVTAQQFILSRTYKNVLVIGAEKISDAVDWQDRSTCVLFG
                     DGAGAAVVSTVKRGGILSTYLGCDGSGGPLLMIPAGGTRLPASHETIDKKLHYIKMQG
                     NELFKIAVHSMAEAARAALKKAGLALKDVDCFIPHQANSRIIGAVVKKLGLSEKNIYL
                     NIDKYGNMSSASVIVAFCEAVRSGRVKKGDIVLLDTFGAGLVWGACVIKW"
     gene            2504..>3173
                     /locus_tag="VJA84_00615"
     CDS             2504..>3173
                     /locus_tag="VJA84_00615"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: protein motif:HMM:NF012901.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004314 - [acyl-carrier-protein]
                     S-malonyltransferase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HLD40660.1"
                     /translation="MVAFIFPGQGAQYIGMGRDLYTAYPQSKEVFDKADKVLGFPISR
                     LCFEGPQDLLTKTRNCQPAIFTASIAALEAFKSRITNHEPRTTKYTAGLSLGEYSAYA
                     ASGVLSFEDALRLVKKRAELMEDATSKYPGKMSAVLGLGREEVQEICLSSGAEIANFN
                     CPAQVVITGRVEAVEKAKQLAQQKGAKRVIDLEVSGAFHSSLMKEAAEELNQQLKDYN
                     IQDAE"
BASE COUNT          855 a          706 c          867 g          745 t
ORIGIN      
        1 aaggatttcc gtttaaatat tgccatagat aaatccgata ccagtattga tatcagcgaa
       61 gacatccgcc aggagattat cctggaatat cccgataagc ctttatgcga ggaaacctgc
      121 ctggggttat gcgttaactg cggccggaat ttgaatgaag gtaattgtaa ttgtgctccg
      181 cctcgcaatc cgagtcaaaa tcttcttcga taattttgac tcgctcggcg gagttaattc
      241 gcgcataaac ttatgttcgc tcgctaaagc tcgctccata agtttagcgc tcattaagga
      301 ggaaaaataa atgccgttac caaagaggag gttttcccgt tcccgcaccc tgaaaaaaag
      361 ggcgcacaaa atatttaagc tgggggagtt gagttcctgt ccccagtgcc atagccccaa
      421 gcattcccat caggtctgcc cggtctgcgg ttattaccgg ggtaaaccag tgctggagat
      481 aaaggtcaaa gaaaagaaga aaaagggtta atgaagaaga taatcgttga cgctatgggg
      541 ggggattatg cccccaaggt tgtggttgaa ggggcgctgg cggcagccag ggaatttccc
      601 tgcaaaatag cccttatcgg taaagaagaa gatattcgcc aggagcttaa gaaagccggc
      661 ggcgatattg attctataga gataattaac gccccggaag taattggtat gggcgagccc
      721 gcggccttaa gcataaggaa gaaacgcaat tcctctatcg taaagggcat agaatcgctt
      781 aaagaggcaa aggctgacgc ctttttcagc gccgggaaca ccggggcagt ggtctgcgcg
      841 gccaccatag gcctgggaat gctttccgga gtggagaggc cggggatcgc catcattatt
      901 cctactttaa agaaggtgcc taccttaata atagatgtgg gcgccaatat agacgctaag
      961 ccctcccatc ttttgcaata cgcggcaatg gcccaggtct attaccagca tatctttcag
     1021 gccgagaagc cctctatcgg cctgctgaat atcggtgaag aagaggccaa aggcacggat
     1081 ttcctcaaag aaacccacaa actgctttct gattccagtt ttaattttat cggtaatatt
     1141 gagggcaggg atatcttcaa aggcaatgcc cggataatta tttgtgacgg ctttgtgggc
     1201 aatatcgccc ttaaggtttc agaaggggtg gccgaggcct ttggcgaact cctgaaacgg
     1261 gagattatga acagcctgat ggctaagatt ggcgtgctct ttatccgtaa cagcctgcgt
     1321 cgttttaaga aacatctgga ttattcggaa tatggcggcg cgcctctttt agggataaac
     1381 ggggtggtaa tgatagggca tggccgttct tcagccaagg ccattaagaa cgcgataaag
     1441 tccgcggtaa aagaagtgga aagcaatgtc aaggaagaga tgatagagtc catcaaatcc
     1501 gtaaccgcga aagccgatca ctcatagaaa tgactaagaa cgccggaatc ataggattag
     1561 gtaaatatct tccgaagaaa aggctgacca acagggatct ggagaagata gtggatacct
     1621 ccgatgagtg gatattcagc cgcaccggga taaaggaacg ccgtttagcc gctaaagatg
     1681 aggccaccag cgatatggct gtccaagcgg ccaaggacgc ccttaaggac tccgggataa
     1741 aggcgaaaaa aatagatttg ataatcgccg ccaccatatc cccggatatg ccatttcctt
     1801 ctgtttcttc tattgttcaa aatgccatag gggcagaaaa tagcgcctgt tttgatttat
     1861 ccgcggcctg cgccgggttt gtctatggcc tggttacggc ccagcagttt atccttagcc
     1921 ggacctacaa gaatgtcctg gtgattggcg cggaaaagat atcggacgcg gttgactggc
     1981 aggaccgctc tacctgcgtg ctttttggcg acggggccgg ggcggcggtg gtttcaaccg
     2041 tcaaaagagg gggcatttta tccacttatt taggttgtga cggttcagga ggtcctttac
     2101 taatgattcc tgccggagga acgcgtcttc ccgccagcca cgagactata gacaagaaac
     2161 tccattacat caagatgcag ggaaatgagc tttttaagat tgccgtccac agtatggccg
     2221 aggccgcccg cgccgcttta aagaaggcgg gattggcgct taaggatgtg gattgtttta
     2281 tccctcatca ggcaaactcc cggataatcg gggccgtggt caagaaactg ggcttgtccg
     2341 aaaaaaatat ttacctgaac attgacaaat acggaaatat gtcttcggcg tcggtaattg
     2401 tcgccttttg cgaggcggtc cgaagcggcc gggtgaaaaa gggggatatt gtgctcttgg
     2461 atacctttgg ggcaggcttg gtctgggggg cttgtgttat aaaatggtag cctttatttt
     2521 ccccggccag ggcgctcaat atataggtat gggcagggat ttgtatactg cctatcctca
     2581 aagcaaagag gtctttgata aagcggataa ggtcttaggt tttcccatct cccggctctg
     2641 ttttgaaggg ccgcaggatc tgctgaccaa gacccggaat tgccagccgg ccatctttac
     2701 cgccagcatc gccgccctgg aggccttcaa gtcacgaatc acgaaccacg aaccacgaac
     2761 cacgaaatac acggccggac ttagcttagg cgagtattcc gcctatgcgg caagcggggt
     2821 cttgagcttt gaagatgcct tgagattggt taagaaaagg gcggaattaa tggaagatgc
     2881 aaccagtaaa tatcccggta agatgagcgc ggttttaggg ttagggcgcg aagaggtcca
     2941 ggagatttgt ctatcatctg gagcggaaat agccaatttt aattgcccgg cccaggtggt
     3001 cattaccggc agggtggagg ctgtggaaaa agccaaacaa ttggcccagc aaaaaggggc
     3061 aaaaagggtt attgacctgg aggtctccgg ggcctttcat tcttcactga tgaaagaggc
     3121 ggcagaagag ttaaatcaac agctcaaaga ttataatatc caggatgccg aaa
//
LOCUS       DATDUB010000031         3305 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_180524, whole genome shotgun sequence.
ACCESSION   DATDUB010000031 DATDUB010000000
VERSION     DATDUB010000031.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3305)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3305)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3305
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_180524"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..479)
                     /gene="kdsB"
                     /locus_tag="VJA84_00620"
     CDS             complement(<1..479)
                     /gene="kdsB"
                     /locus_tag="VJA84_00620"
                     /EC_number="2.7.7.38"
                     /inference="COORDINATES: protein motif:HMM:NF003952.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008690 - 3-deoxy-manno-octulosonate
                     cytidylyltransferase activity [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
                     /protein_id="HLD40661.1"
                     /translation="MDVIGVIPARYGSTRFEGKVLADIHGKPMLQWVWEAAKKAKILD
                     EVIIACDDERIEDTARSFGARVTRTSKDHQSGTDRLCEVVNPLEVKVVVNIQADEPLL
                     EPVMLENIARPLLDDASLNVTTLMKRIDDPSEIKDPNVVKVVTDRQGLALYFSRLAIP
                     "
     gene            complement(588..1553)
                     /gene="rfaE1"
                     /locus_tag="VJA84_00625"
     CDS             complement(588..1553)
                     /gene="rfaE1"
                     /locus_tag="VJA84_00625"
                     /inference="COORDINATES: protein motif:HMM:TIGR02198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016773 - phosphotransferase activity,
                     alcohol group as acceptor [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-beta-D-manno-heptose-7-phosphate
                     kinase"
                     /protein_id="HLD40662.1"
                     /translation="MRLKAIIQKFPKARVLVLGDLILDEFIWGKVERISPEAPVPVVL
                     VNSESFMPGGATNVASNIASLGGIALICGIAGDDKAGRTLDLELRKRGVDTSGIIVDA
                     HRPTTVKTRIIAHHQQVVRVDREKSGPLDDALLEQILTFIRARIETVDAVIIEDYGKG
                     VIVPRLLTRIIPWARKYKKIVTVDPKIDHFSYYKGVTCITPNEKEAQGGSGVIIKDSA
                     DIERAGKKLLKELDLESCLITRGENGMSLFERDGKSIHIPTVAQEVFDVSGAGDTVIA
                     AFTLALASGASKLEAAHLSNFAAGIVVSKVGTAVVTKEELIERIK"
     gene            complement(1681..2613)
                     /locus_tag="VJA84_00630"
     CDS             complement(1681..2613)
                     /locus_tag="VJA84_00630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004513951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40663.1"
                     /translation="MKIDLNKVKTYSIKQRLSKVKKDAFARPCAKGESFGAFLNSLPC
                     ILKAGDFRAVVEAIVKAKKKGKPVILMMGAHVIKCGLNPLVIDLLKKKVISAIVLNGA
                     GIIHDFEIAYQGKTSEDVAAALKLGSFGMGQETAEFLNQAINQGVRSGLGIGEAVGKA
                     IAGGKLKYCKDSILSVCYRNNIPVSVQVAIGTDIIHQHPSFDGASTGEGSKRDFLKLA
                     ETVSKLGNGGVVLNFGSTVILPEVFLKALNLARNLGYKAYNFTAANFDMVHHYRPQVN
                     VVSRPTQDTGKGYYITGHHEIMLPLLHRAVVEKL"
     gene            complement(2816..3070)
                     /locus_tag="VJA84_00635"
     CDS             complement(2816..3070)
                     /locus_tag="VJA84_00635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HLD40664.1"
                     /translation="MISRIGLATRVAPTLGDIVGAFKSIAANEYIHNVKNNDWPPFKG
                     SLWQRNYYEHIIRDERDLNRVREYVVNNPYKWQEDEYYTA"
BASE COUNT          807 a          984 c          705 g          809 t
ORIGIN      
        1 gggatggcca aacgggaaaa atataaggcc agcccctggc ggtcagtaac caccttgacc
       61 acattggggt cttttatctc cgacgggtca tctatccttt tcatcagggt agtcacattc
      121 aaggaggcgt catctaaaag cggccgggcg atattttcca gcatcaccgg ctccagaagc
      181 ggctcatcgg cctggatatt caccaccacc ttaacctcta aagggttgac cacctcacaa
      241 agtctgtcgg tgcctgactg gtgatccttg gaagtccgcg tgaccctggc cccaaatgac
      301 ctggccgtat cttcaatccg ttcatcgtca caggcaataa tcacctcatc caggatcttg
      361 gcttttttcg ccgcctccca gacccattgc agcatcggct taccatgaat atcggccagg
      421 accttgccct caaaacgggt agagccatac ctggccggga tcacccctat tacatccatc
      481 tttcctcgct tcgctcggaa cgcggaacaa cgctgaactt tacgcgcctg cctgccggca
      541 gggaaacacg cgatacaagt tatgcgtagt tccgcgcagt tccgcgacta tttaatcctt
      601 tctatcaact cttctttagt cactactgcg gtgcccacct tgctaaccac aatcccggcg
      661 gcaaaattag agaggtgcgc ggcctcaagc ttagacgccc cgctggccag ggccagggta
      721 aacgcggcga ttaccgtatc cccggcgccg gaaacatcaa aaacctcctg ggccaccgtc
      781 gggatatgga tactctttcc atcacgctca aacaggctca tcccgttttc cccccgggta
      841 atcaaacaag actccaaatc caattcctta agcagtttct tcccggcccg ctcaatatcc
      901 gcgctgtctt ttataataac ccccgaaccg ccctgggcct ctttctcatt cggggtaata
      961 caggtaaccc ctttataata agagaaatgg tctatcttcg ggtccaccgt gactatcttt
     1021 ttatatttcc tggcccaggg aattatccgg gtcaagagcc ggggaacaat caccccttta
     1081 ccgtaatcct ctataatcac cgcgtcaacc gtttcaatcc gcgcgcggat aaaagtcaat
     1141 atctgctcca gaagagcatc atccagcggc ccgcttttct cccggtccac ccgaaccact
     1201 tgttgatgat gggcaattat ccgggttttt accgtggtcg gccgatgcgc gtccacaatg
     1261 attcctgagg tatccacccc tctttttcgc agttccaaat ccagggtccg gccggcctta
     1321 tcgtcaccgg caatcccgca gataagcgcg atacctccca aagaggcaat attgctggcc
     1381 acattggtcg ccccaccggg cataaagctc tcggaattaa ccaagaccac cggcaccggg
     1441 gcctccgggg atatcctctc caccttgccc cagataaact catccaaaat caaatcccct
     1501 aacaccagaa ccctggcctt aggaaacttc tgaattatcg cctttaatct catctaaaaa
     1561 tctccatatc aacttgttaa tcacgggtgc cccaggacac cagtcacaag agcactatca
     1621 catcgctacg agcgcgttga gcgtccctgc gaaaatacaa ccttgacagg acccgcgcac
     1681 tcacaacttc tccactaccg ccctatgcaa aaggggcagc attatttcat gatggccggt
     1741 gatgtaataa ccctttcccg tatcctgggt cggcctgctt accacattaa cctggggccg
     1801 gtaatgatgc accatatcaa aattggccgc ggtgaaatta taggccttat aacctaagtt
     1861 acgggccaaa ttcagggcct ttaagaaaac ctccgggagt atcacagttg agccgaagtt
     1921 taaaaccacg cctccatttc ccagtttaga aacagtctcc gctaacttca ggaaatcccg
     1981 cttagagccc tcaccggtag aggccccgtc aaatgaagga tgctgatgga taatatccgt
     2041 gcctatggcc acctggacgc tgaccgggat attattccgg taacagacag acagtatgct
     2101 gtctttacaa tatttgagct ttcccccggc aatggccttg cccactgcct cgcctattcc
     2161 caatccgctt cttacccctt ggttaatggc ctgattcaaa aactccgcgg tctcttgccc
     2221 catcccgaag ctccccaatt ttaaggccgc ggccacatcc tccgaggtct taccctgata
     2281 ggcaatttca aaatcgtgga ttatcccggc tccgtttaag acaatagcgc taatcacctt
     2341 tttcttaagc aggtctatta ccaggggatt aagcccgcac tttatcacat gcgcgcccat
     2401 catcaggatt accggcttgc ctttcttttt ggccttgact atcgcctcta ccaccgcccg
     2461 gaaatccccg gccttcaaga tacaggggag agaatttaaa aaggccccaa agctttcccc
     2521 cttagcgcaa ggcctggcaa aggcatcctt ttttacctta gacaatcttt gctttatgga
     2581 atatgttttg accttattca aatctatttt cactcgaaaa tcccttatat caatactacc
     2641 tttatcaggc ctggggcagg tgtcccgcgc gcagttccgc aggcgtcatt ccaaaatgta
     2701 atcattcaga aaaacgccga ggatgtttga gcacgggata cctgacgcag gccgaatggt
     2761 tctgactgtt tcatcaaact atcttatcac ggctttagga tatcgtcaac cgcctttaag
     2821 cggtataata ttcgtcttcc tgccatttat atggattatt cacgacatat tcgcggacgc
     2881 ggtttaaatc gcgttcatcg cgaataatat gttcgtaata attcctttgc catagagatc
     2941 ctttaaacgg cggccaatca ttgtttttga cattatggat atattcgttg gcggcaatag
     3001 atttaaacgc gccaacaata tcccccaatg taggggcaac ccttgtggca agccctatcc
     3061 gcgatatcat tgttttgggc gcccacaagg ggcgccccta caatgaaaat ttcaaaaaat
     3121 ctcgccccgc cttacggcgg ggaaaatcag attttcagat gaccagataa ccaaggaggt
     3181 tgccagccta ttgcctcaaa caagcgcgca acgagcgccc ggccgagacc ggatggtcgt
     3241 tgttgctggt gctgccccag atgcagccgt cgaagccgga gcaggcgaca gaaagcggtt
     3301 ctgta
//
LOCUS       DATDUB010000032         3480 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_849039, whole genome shotgun sequence.
ACCESSION   DATDUB010000032 DATDUB010000000
VERSION     DATDUB010000032.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3480)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3480)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3480
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_849039"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2014
                     /locus_tag="VJA84_00640"
     CDS             <1..2014
                     /locus_tag="VJA84_00640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007221025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit"
                     /protein_id="HLD40665.1"
                     /translation="IMSVLGAATPGFTQQQQAAPHGKTKTPALDAFGRDITHAAKEGK
                     LDPVIDRKIEIERIIQILSRRTKNNPVLLGEAGVGKTAIVEGLAQLIVNENVPDVLRN
                     KRLIILDLALMVAGTKYRGQFEERIKAVMEEIKRSQDVIIFIDELHTLVGAGAAEGAI
                     DASNILKPSLSRGEIQFIGATTMDEYRKYIEKDAALERRFQTIMVEPPNAPQTVEILK
                     GLRDRYEAHHKVKFLDEALEAAAKLSERYISGRFLPDKAIDLIDESGSRARLDVLVIP
                     PDIKELEAKVEALKKDKEALIKSQDFEKAAALRDQERQARLELEKVNKEWNQKKDQMR
                     PQIDAEAIAKIISQWTGIPLFRLEEKEGDKLLKIEENLHKRVVGQEEAISAIANATRR
                     SRAGIKDPRRPIGSFIFLGPTGVGKTLLARALAEFMFGDEESLIQIDMSEYMEKHNIS
                     RLIGAPPGYVGYEEGGQLTEKVRRRPYSVILLDEIEKAHSDVFNLLLQVFEDGRLTDS
                     FGRKIDFRNTVVIMTSNVGAELIRKQGSLGFKSQKEELTYQEMKEKLLGEVKHAFKPE
                     FLNRIDDIIVFRPLIKEDLHRIVDIELGHLIKRLTEQKINLELTPTAKDFLIEKGFDP
                     VFGARPLKRIIQRFVEDPLAQEIITKRFKEGSNVRVDKKNDVLVFE"
     gene            1995..3011
                     /locus_tag="VJA84_00645"
     CDS             1995..3011
                     /locus_tag="VJA84_00645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40666.1"
                     /translation="MSWYLNKTFRILILLFCCAGLSILSKEALAQETKTFDGRIDFFS
                     QYASFIFDLKEQGVLSAAGNTQGDKYSIHLSLKHIRFGKSDISCDFYSSGIILKAENG
                     KIKAVKGRAWTQASLLNFKPLKEFSADYEINDSGLTIKTLNWADIEIKGEIKRNPDGT
                     LFSNPDFDLYLTIKEMALDELAGLLGINPKDTALSGKVSGEIRLKGPKEAMKIEAKLT
                     ALNGRAEEVKFNNAKFALKGIFPVMRLEDAQINEVNGAAYELKGQFNLLELSNLGSPQ
                     HQVTVHSANNVMLIQDWIIKHNIDYEGKDIVEAAYPLKNNQALKMRVKNQDETLGWQK
                     TVKF"
     gene            3044..>3480
                     /locus_tag="VJA84_00650"
     CDS             3044..>3480
                     /locus_tag="VJA84_00650"
                     /inference="COORDINATES: protein motif:HMM:NF014460.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HLD40667.1"
                     /translation="MAKNIISFAHKVGSHIVYYIDYVGALTRLFFKTLYWIFIPPFKR
                     QRILRQAFIIGVESLPIVSLVAFFIGVILALQTAYQMQKLSSEIYIANIVALSIVREL
                     GPVITSLIVAGRCGAAITAELGTMKVTEQIDALETLAANPIKYL"
BASE COUNT         1033 a          797 c          856 g          794 t
ORIGIN      
        1 aattatgtcg gttctgggag cggctacccc cggcttcacc caacaacagc aggcggcccc
       61 gcacggaaaa accaaaaccc cggccctgga tgcttttggc cgggatatta ctcatgccgc
      121 caaagaaggc aagcttgacc cggtaattga ccgtaaaatt gagattgaac ggattatcca
      181 gattttatcc cggcgcacca aaaataaccc ggtgcttttg ggtgaggcgg gcgtgggaaa
      241 aaccgcgatt gttgagggat tagcccagtt aatcgttaac gagaatgtcc ctgatgtctt
      301 aagaaacaag cgcctgataa tcctggattt ggccctgatg gttgccggga ctaaataccg
      361 cggccagttt gaagagcgaa tcaaggcggt aatggaagaa atcaagcgct ctcaggatgt
      421 aatcatattt atagacgaac tgcacacctt agtcggggcc ggagcggctg agggggcgat
      481 agacgcctca aatatcttaa agccgtcctt atcacgggga gaaatccaat tcatcggagc
      541 caccaccatg gatgaatacc gcaaatacat tgagaaagac gcggccctgg aaagaagatt
      601 ccagactata atggttgaac cgcccaacgc tccgcagaca gttgagatac ttaaaggctt
      661 aagggataga tacgaagccc accacaaagt aaagttctta gacgaggcct tagaggcggc
      721 ggctaaatta tccgaacgct acatctcggg caggtttctt ccggataaag ctattgacct
      781 gattgatgaa tccggctccc gggccaggtt agacgtcctg gtaatccccc cggatataaa
      841 agagcttgag gcaaaggtag aggccttaaa aaaagataaa gaagccctga taaaatccca
      901 ggattttgaa aaagccgcgg ccctgcgcga ccaggaaaga caggcgcgtc tggagctgga
      961 gaaggtaaat aaagagtgga accaaaagaa agaccagatg cgcccccaga tagacgccga
     1021 agccattgcc aagataattt cgcaatggac aggaataccg ctttttcgcc tggaagaaaa
     1081 agagggtgac aaactgctta aaattgaaga aaatctgcat aaacgggtgg taggccagga
     1141 agaggccatc tcggcgattg ccaatgccac ccgacgttcc cgggccggga ttaaagaccc
     1201 ccgccggccc atcggctcat tcattttctt agggccgacc ggcgtaggta aaactctctt
     1261 agcccgggcc ctggctgagt ttatgtttgg tgatgaggaa tccctgattc agatagatat
     1321 gtccgaatat atggaaaaac acaatatctc ccggctaatc ggcgctcctc cgggatatgt
     1381 gggctatgag gaaggcggac aattgactga aaaggtcagg cgtcgtccct attcggtaat
     1441 tctcttagat gaaattgaaa aggcccattc cgatgtcttt aacctgctgt tacaggtgtt
     1501 tgaagacgga cggctcaccg atagcttcgg ccgcaagata gactttcgta atacagtggt
     1561 aattatgacc tctaacgtgg gggcggaact tatccgcaag caaggctctt taggcttcaa
     1621 atcccagaaa gaggaattaa cttaccagga aatgaaagaa aagctcttgg gtgaggtaaa
     1681 gcacgccttc aagccggagt ttctcaaccg aattgatgat atcatcgtct tcaggccatt
     1741 gattaaagag gacctgcaca gaattgtgga tattgagctg ggccatctta tcaaaaggct
     1801 tacggagcaa aagataaacc ttgagctcac cccgacggcc aaggatttcc tgattgagaa
     1861 aggttttgac ccggttttcg gggccaggcc attaaaaagg ataatccaga gattcgtgga
     1921 agatcctctg gcccaggaaa tcattactaa acgttttaag gaaggttcta atgtccgggt
     1981 ggacaagaaa aacgatgtcc tggtatttga ataaaacctt tagaatcctt attttacttt
     2041 tctgctgtgc cggcttgagt atcctgtcta aggaagcctt agcccaggaa accaaaacct
     2101 ttgacggcag gattgatttc ttcagccaat acgcctcttt catcttcgac ctgaaagaac
     2161 aaggcgtgct ttcagccgcg ggaaatacac aaggcgataa atacagcata cacttatctt
     2221 taaagcatat aagattcggt aaaagcgata tatcatgcga tttctactcc agcggaataa
     2281 ttctaaaagc ggaaaacggg aaaataaaag cggtaaaagg aagagcctgg acccaggcct
     2341 cattgcttaa ttttaagccc ttaaaagaat tctccgccga ttatgaaata aacgacagcg
     2401 gcctgaccat caaaacgctc aactgggcgg atatagaaat caaaggagag atcaaaagaa
     2461 acccggacgg cactcttttt tctaaccctg attttgacct ctatttaacc attaaagaaa
     2521 tggccctgga tgaactggcc gggctccttg gcattaatcc caaagatacc gctttatccg
     2581 gtaaggtatc cggagaaata aggctaaaag gccctaagga ggcgatgaag atcgaggcta
     2641 aattaaccgc tctcaacggc cgggcggaag aggttaaatt caacaacgct aaattcgccc
     2701 tgaaaggaat ttttccggtt atgcgcttag aggacgccca aataaacgag gtaaacggag
     2761 cggcctatga attaaaaggg caatttaatc ttttagagct gtctaatctt ggctctcccc
     2821 agcaccaggt aaccgtccat tcggcaaata atgttatgct tattcaggat tggataatca
     2881 aacataatat tgattacgaa ggaaaagata tcgtggaggc ggcgtatcct ttaaagaaca
     2941 accaggcgct taagatgcgc gtcaagaatc aggatgagac cttgggatgg cagaaaacgg
     3001 taaaatttta gcatatagcg tatagcatac ggcattaaga cttatggcta aaaacattat
     3061 tagctttgcc cataaggttg gctcgcacat agtctattat attgactacg tgggcgcgct
     3121 gaccaggctt ttttttaaaa cgctctattg gatatttatc ccgcctttta agcgccaaag
     3181 gatcctgcgc caggccttta tcatcggagt agagagcctg ccgattgttt ccttagtcgc
     3241 ctttttcatc ggagtaatcc tggccctgca gaccgcctac caaatgcaga aactttccag
     3301 cgagatatac atcgctaaca ttgtagccct ctctatcgtc cgggagctgg ggccggtaat
     3361 caccagcctg atagttgccg gcaggtgcgg ggcggccata accgcggaat tgggcaccat
     3421 gaaagtaacc gagcagatag acgccttaga gaccctggcc gctaacccga taaaatatct
//
LOCUS       DATDUB010000033         4064 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_16211, whole genome shotgun sequence.
ACCESSION   DATDUB010000033 DATDUB010000000
VERSION     DATDUB010000033.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 4064)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4064)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4064
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_16211"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            271..1152
                     /locus_tag="VJA84_00655"
     CDS             271..1152
                     /locus_tag="VJA84_00655"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_process: GO:0009966 - regulation of signal transduction
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HLD40668.1"
                     /translation="MADSSANILIIEDEVEIASVIETTLQGIGYNVYRVLEPREGIAM
                     LSDTEFAAVITETRSAKMNGIEVTRAVQRISPETNVIVLTFYSFISSAIEAMEAGAYG
                     YITKPLNISEIRIVTQRAVERFFLLSANADKDYYAQLVVLDGLTGLYNRRYFNELMTL
                     EFSKLNRSQDTLSLLMIDVDNFKKYNDTNGHPAGDKLLKDAAQVFGSVVRDVDSVCRY
                     GGEEFAVLLPQASKEEAALVAERLRAQVNLYLGATVSIGIGSAPADAQEAQALIDKAD
                     AALYQAKQTGKNKFCLA"
     gene            1337..1909
                     /locus_tag="VJA84_00660"
     CDS             1337..1909
                     /locus_tag="VJA84_00660"
                     /inference="COORDINATES: protein motif:HMM:TIGR01662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HLD40669.1"
                     /translation="MTRAVFLDRDGVINRYPGDGKYVTNLKEFSFLPKVKEAIALLTS
                     HKYPLFIISNQAGVGKGLYSQAVLERITEHMLKELSRHKGKVQAVYYCTHRNEDNCSC
                     RKPKAGLIKKAIDGRDIDIKNSFFVGDTIRDIQTARAAGCRSILIFSGQEKPANRDSW
                     PVQPDYVFPDLYQAAKFIIQKNKGSMVNGL"
     gene            2159..3373
                     /locus_tag="VJA84_00665"
     CDS             2159..3373
                     /locus_tag="VJA84_00665"
                     /inference="COORDINATES: protein motif:HMM:NF018613.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016758 - hexosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HLD40670.1"
                     /translation="MKKVLLVYVSAGAGHQKAAEALYQFLKDNHPELELQIIDLLDYT
                     PASFRLFYSKGYIFLISKLPWLWHLLYRTSSLFANNKIFAYLDYLTALPFVDLLVRER
                     PDVVISTHFLTSSILTVFKKKNPARNIKLVSIITDYNLHPLWLGEGGDLYIAACDFAR
                     EELLRRNVPADKVRVRGIPAKEKFYRQEDRKQIAAKYGIKDSVFTVLIITGAVGLGPI
                     EEIAKALAGEIQVLAVCGKNKRLYQRLNALASRSLSVIASDRRERSNPKNEIASSSRE
                     AGLLAMTNKFGLLKAFPLIDYVDELMSVTDAVITKAGGLTITESLAKGLPMVFFSNIP
                     GLESSNARVLSENGCAFDTSGIEEIKQRVLSLKNNPVFYQQTVSSIIRFRKSQTLTAI
                     ACEIKNLLTCRG"
     gene            3394..3618
                     /locus_tag="VJA84_00670"
     CDS             3394..3618
                     /locus_tag="VJA84_00670"
                     /inference="COORDINATES: protein motif:HMM:NF014838.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40671.1"
                     /translation="MSVSIIETRGVIWEGMAKRVVLPAKEGQICVLDNHQPFLARLKE
                     GVIRLPEMETTVKDGVAVMNANELKVFVEF"
     gene            3622..3843
                     /locus_tag="VJA84_00675"
     CDS             3622..3843
                     /locus_tag="VJA84_00675"
                     /inference="COORDINATES: protein motif:HMM:NF012365.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase F0 subunit C"
                     /protein_id="HLD40672.1"
                     /translation="MGISELIVILLMFLSTAGPAAVIAYVGSAALKAVSRNPAASPKI
                     FIVMILSFIFSGSIAVVALLIIYNLFSKG"
     gene            3847..>4064
                     /locus_tag="VJA84_00680"
     CDS             3847..>4064
                     /locus_tag="VJA84_00680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40673.1"
                     /translation="MLIKLAIIQVITFAAIILVLRFVFSRNLNSALGRLNALHEENLV
                     KEDQLSDELKRAKEERDAEVKKGRDEAVL"
BASE COUNT         1042 a          915 c         1031 g         1076 t
ORIGIN      
        1 tcattgcgag cgaagcgaag caatctctta cgacgggatt gcttcggcac ttcgtgcctc
       61 gcaatgacac tttaaaaatc gaatctcgaa atagtgtttc cgtcagagac aatgtcataa
      121 tttggacatg tctgatattg aatgagactg ttgaattagc gaatattctg gcatcaagca
      181 ttttaactat gaggggaaaa gcgaataccg taaagttttt aatttttcct tgtactttta
      241 ccttttacct ttttactttc acctttttat atggctgata gcagcgcgaa tatactgata
      301 attgaggatg aggtagaaat cgcctcggtt atagagacta cgcttcaggg gataggttat
      361 aatgtctatc gggtacttga gccgcgagag gggattgcta tgctctctga taccgagttt
      421 gccgcggtga ttaccgagac ccgctcggcc aaaatgaacg gcattgaagt gacccgggcc
      481 gtgcagagga tttccccgga gaccaatgtc attgtgctga ccttttattc ctttatcagc
      541 tcggcgattg aggcgatgga ggccggggcc tacggatata tcaccaagcc cctgaatatt
      601 tccgagatcc ggattgttac ccagcgggcg gtggaaaggt ttttcctgct ttcggccaat
      661 gccgacaagg actattacgc ccagttagtg gtcctggacg ggcttaccgg tttatataac
      721 cgcaggtatt ttaacgagct gatgacctta gaattctcca agcttaaccg aagccaggac
      781 accctgtctt tattgatgat tgacgtggat aattttaaga aatacaacga taccaatgga
      841 caccccgccg gggataaact gcttaaagac gcggcccagg tctttggctc cgtggtcagg
      901 gatgtagact cggtctgccg ctatgggggg gaggagttcg ccgtcctgct tcctcaagca
      961 agcaaagaag aggccgccct ggtggccgaa cgcctgcggg cccaggtgaa tctgtatctg
     1021 ggggcaactg tcagtatcgg tatcggctcg gctccggctg acgcccagga ggcccaggcc
     1081 ctgattgaca aggccgatgc cgcgctatat caggccaagc agaccgggaa aaacaaattc
     1141 tgtttggctt aatgaggctg tgtcataatg tcatcctgac cctgagcgca agcgaagggg
     1201 aaggatctcg ttttttaaat tagcgacgag attcttcggt cgcctctgct ccctcagaat
     1261 gacaaaatgg tcaattcagg aaattgcgac acagtctgaa tgccataaaa ataaatttag
     1321 gactcactat aataatatga cgagggctgt gttcctggac cgggacgggg tgattaaccg
     1381 ctatcccgga gacggcaaat atgtaactaa tttaaaggaa ttcagtttcc tgcctaaggt
     1441 aaaagaggca atcgccttat tgacttctca taagtatcct ctatttataa tttccaatca
     1501 ggcaggggtg ggtaagggat tatattctca agcggtctta gagcggataa ctgaacatat
     1561 gcttaaggag ttgtcccggc ataagggcaa ggtccaggcg gtctattact gcacacaccg
     1621 caatgaagat aactgttcct gccgtaaacc taaggccggg ctgattaaga aggctattga
     1681 cggcagagat attgacatca aaaattcctt ctttgtggga gatactatcc gggacatcca
     1741 gactgcccgg gccgcgggat gccgctccat acttattttt tccggccagg aaaagccggc
     1801 taaccgcgac agttggccgg tccagccgga ttatgttttc cctgacttat atcaggcggc
     1861 aaagtttatt attcaaaaaa ataaagggtc tatggtcaat ggtctatagt ctatagttga
     1921 caaaaaatag cttttgacta tcgactattg actatactag tgtagtgtct tataagtctc
     1981 tttacttata gtctcttaca ttattgtcat tctgaggcga agccgaagaa tctcgtattt
     2041 tagatccttc gtcgctgccg ctcctcagga tgacgaagat tatcaaatgt aaagaagcgt
     2101 tagggacaat gcactagtaa ctattgacta tcgacccata attctttatc ctatacttat
     2161 gaaaaaggtt ttgctggtct atgtctcggc gggggccggg catcagaagg cggctgaagc
     2221 cctgtatcaa ttcctcaagg acaaccatcc tgaacttgaa ctccaaataa ttgacctctt
     2281 agattatacc ccggcctctt tccggctctt ctattctaaa ggctatatct ttttaatcag
     2341 taaactcccc tggctctggc atttgcttta ccggacatcc tctctttttg ccaataataa
     2401 aatatttgcc tatctggatt acctgactgc cttgcctttc gtagatttgt tagtccgaga
     2461 gaggccggat gtggtgatct ccacccattt tctgaccagc agtatcttga ccgtattcaa
     2521 aaagaaaaac cccgcgcgga atataaaatt agtttctatt attaccgact acaacctgca
     2581 tcctttatgg ctgggcgagg ggggggattt atatatcgcc gcctgcgatt tcgcgcgcga
     2641 ggagttattg agaagaaatg tccccgcgga caaggtccgg gtccgcggta tcccggccaa
     2701 agagaagttt taccggcagg aggatagaaa acagatcgcc gccaagtatg ggattaagga
     2761 ttctgttttt acggttttga taatcaccgg ggcggtgggc ctcggcccga ttgaagagat
     2821 agccaaggcc ttggccggag agattcaggt cctggcggtt tgcggaaaga ataagcggct
     2881 ttaccagcga ctcaatgccc ttgccagccg cagtctttct gtcattgcga gcgaccggag
     2941 ggagcgaagc aatcccaaaa acgagattgc ttcgtcgtcc cgcgaagcgg gactcctcgc
     3001 aatgacaaat aagtttggtt tgctgaaggc attccctttg atagactatg tggatgagct
     3061 gatgtcggtg acggacgcgg taatcaccaa ggccggcggc ttgaccatta ccgaaagctt
     3121 ggccaagggc ctgccgatgg tgtttttctc taatatcccg ggcctagaaa gctctaatgc
     3181 cagggtgctc tcggaaaacg gatgcgcctt tgatacctct ggcattgaag aaataaaaca
     3241 gcgggtcctt tctttaaaaa ataatcccgt tttctatcag caaacagtct ccagcataat
     3301 ccgcttcagg aaaagccaga ccctgacggc aatagcctgc gaaatcaaaa atctcctaac
     3361 ctgtcgcggg taaatgtgat ataataaaaa aatatgagtg taagtattat tgaaaccagg
     3421 ggggtaatct gggaggggat ggctaagcgg gtggttcttc ctgccaaaga agggcagatc
     3481 tgcgtcttag acaaccacca gccgtttctg gcccgtctga aagaaggggt catccgcctg
     3541 ccggagatgg agacgacagt caaagacggg gtcgcggtaa tgaatgctaa tgagttgaag
     3601 gtgtttgttg agttttaaaa tatgggtatc tctgaattaa ttgttatctt actgatgttc
     3661 ctttccaccg ccgggccggc ggcggtgatc gcctatgtgg gaagcgccgc gctcaaggcg
     3721 gtatcccgta atccggcggc ctcgcctaag atttttatcg tgatgatttt gtcctttatt
     3781 ttttccggtt caatcgcggt ggtggcgctg ttgataatct ataacctttt tagcaaagga
     3841 taaaatatgt taattaaatt ggcaataatc caggtgatta ccttcgcggc gattatcctg
     3901 gtcttgcgct ttgtcttttc ccgcaatctt aactcggcct tgggccggtt gaacgccctg
     3961 catgaggaaa atttagtcaa ggaagatcag ttgagcgatg aattaaaacg ggccaaggag
     4021 gaacgggacg ccgaggtcaa aaaaggacgg gatgaggcgg tcct
//
LOCUS       DATDUB010000034         5104 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_521589, whole genome shotgun sequence.
ACCESSION   DATDUB010000034 DATDUB010000000
VERSION     DATDUB010000034.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 5104)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5104)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5104
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_521589"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1481)
                     /locus_tag="VJA84_00685"
     CDS             complement(<1..1481)
                     /locus_tag="VJA84_00685"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018205329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003852 - 2-isopropylmalate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019752 - carboxylic acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HLD40674.1"
                     /translation="MDKIIIFDTTLRDGEQSPGASLNQKEKLEIAFALEKLGVDALEA
                     GFPVSSPGDFESVKLIARQVRKPIICGLARALKKDIQAAYEATKPARRARIHVFLATS
                     KIHMKYKLKKAEEEILRLAVEAVKYARNLCPDIEFSPEDASRTEKDFLYRVVEAVIKA
                     GAKTVNIPDTVGYAEPQGYGELIRLLKENVPNIGQAVISVHCHNDLGLAVANSLSAVQ
                     NGARQVECTINGIGERAGNASLEEIVMGLKVRKDFFKVGTAINRKELYKTSRLVSKLT
                     SFVVAPNKAIVGLNAFRHESGIHQDGVLKERSTYEIIQAKDVGFKVEGIVLGKHSGRH
                     AFKERLNNLGYKLGDKDIDRAFGKFKLLADKKKQIFDEDLLAIVQEGMDIPPREAWSL
                     NTFEIHSGNRLSPFARVILKLKGKLIEGESGGDGPVDACYKAIEKIIRFKCQLLDYGI
                     QSVSRGEDAQGEVSVRLRAKGKEVFGRGSSTDIIEASLKAYLQA"
     gene            complement(1513..2814)
                     /locus_tag="VJA84_00690"
     CDS             complement(1513..2814)
                     /locus_tag="VJA84_00690"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: protein motif:HMM:NF012492.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HLD40675.1"
                     /translation="MMKQNNHEQKAAPDAGTGFFGLGIAPRILETLERIKFKTPTPIQ
                     YKAIPLAIEGKDVIGIAQTGTGKTHAFAIPMIQRLAQKDALAIVLAPTRELALQIDEA
                     VRVLAQPFGMRTACLIGGAPMRPQEDALRRRPHIIIATPGRFIDHMESRNILMVRVNM
                     LVIDEADRMLDMGFAPQVEKILMLLPRQRQTMLFSATMPAEIMKMVNTYMQLPVHVEM
                     APSGTTAEGVTQELYIVKREAKISLLSKILSQYQGSVLLFIRTKHSAHKIVRSIREMG
                     HRVAEIHSDKSLPQRREALEGFKSGRYRVLVATDIASRGIDVTKIEVVINYDLPEDVE
                     NYVHRIGRTARAGCKGRAISFATPDQKGDVKNIEQLIRKQLPIVKHPEIPAEEFEAFA
                     RPAPTRGARRGFGSQGYRPRQGGGHPAPRRGSGGDSWRRRF"
     gene            complement(3067..4014)
                     /locus_tag="VJA84_00695"
     CDS             complement(3067..4014)
                     /locus_tag="VJA84_00695"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004071762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HLD40676.1"
                     /translation="METEKIESQARILANRVHKRFRHLSRRFRRQGIECFRLYDWDIP
                     EVRAVVDWYAGHIVIAEYERRQTTPDWLPRMAQAVAGVLDIPLERAHMKRRRTKTEDQ
                     PRYGRMSSRGERFKARERNLYFWVNLDDFLDTGLYSDHRDTRVIVGKLAEGRDFLNLY
                     GYTGAFTCAAAAGGAKTTVTVDRSDTYLKWARDNLELNGLWGKQHSLIQSDAVKYLKQ
                     AQHDGQRFNLAVVDPPSFFQDHGRGVSFDINRDHPALLKDVLKVMAAGSEVFFSTNHQ
                     CFSPRLEGLPIKKLVELTPATIPEDYRNRLAHRCWRLTT"
     gene            complement(4033..4800)
                     /locus_tag="VJA84_00700"
     CDS             complement(4033..4800)
                     /locus_tag="VJA84_00700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012960451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015499 - formate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015724 - formate transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formate/nitrite transporter family protein"
                     /protein_id="HLD40677.1"
                     /translation="MYHEALENMAALSVAKSSYLKKSRLSYLVASILAGAYVGFGIIL
                     IFTVGAPLAEANAPAVNLVMGLSFGIALTLVVFAGSELFTGNNMCMAIGALEKKVTLA
                     DLLNVWGWSWIGNFLGSIGLAVLAALSGVMASKADFVAKAAYAKMQAPASELFFRGLL
                     CNWLVCLAIWTSSRTKSDAAKCILIFWCLFAFIACGFEHSVANMTLLPLALFLPHPET
                     VTWLGVWKNLFVVSLGNIVGGAVCVGFLYWLSCRAKD"
BASE COUNT         1200 a         1497 c         1194 g         1213 t
ORIGIN      
        1 gcctgcaaat aggccttaag cgaggcctca ataatatccg tggaactgcc ccggccaaat
       61 acctccttgc ctttggcccg aagacgcacg ctcacctctc cctgggcatc ctcgccccgg
      121 ctgaccgact gtatcccgta atctaagagc tggcacttaa aacggatgat cttttctatc
      181 gccttataac aggcatccac cggcccgtct ccaccggact cgccctcaat caacttaccc
      241 tttaacttca gtattaccct ggcaaaaggg ctaagccggt tcccggaatg gatctcaaag
      301 gtgtttaaac tccaggcctc gcgcggggga atatccatcc cctcctggac aatcgccagc
      361 aggtcctcat caaagatctg cttcttttta tccgccaaga gcttaaactt cccaaaggcc
      421 cggtcaatgt ccttatcgcc taacttatag cctaaattat tcagcctttc cttaaaggcg
      481 tgccggccgg agtgcttgcc taagactatc ccctccacct tgaaacccac atccttggcc
      541 tggatgatct cgtaggtgga tcgttccttt aacaccccgt cctggtggat gccggactca
      601 tgacggaagg cgtttaagcc cacaatggcc ttgttcgggg ccaccacaaa actggtgagc
      661 ttgctcacca agcgcgaggt cttataaagc tcttttctat ttattgctgt gccaacctta
      721 aagaagtcct ttcttacctt aagccccatc acgatctctt ccaaagaggc gttgccggcg
      781 cgctcgccga tgccgtttat ggtgcattcc acctggcggg ccccgttttg gaccgcggaa
      841 agcgaattgg ccacggccag ccccaggtca ttgtggcaat gcacggagat aaccgcctgg
      901 ccgatattgg ggacattttc ctttaacagc cggatcagct ctccataacc ttgcggctcg
      961 gcatagccta cggtatccgg aatattcacc gtcttggccc cggccttaat caccgcctcc
     1021 accacccggt agagaaaatc cttctcggtg cgcgaggcat cctcgggaga aaattcaata
     1081 tccggacaga ggttgcgggc atacttaacc gcctcaactg ccaggcgcag gatttcctcc
     1141 tcggccttct tcagcttata cttcatatgt atcttggaag tggccagaaa gacatggatg
     1201 cgcgctcgcc ttgccggttt agtcgcctca taggcggcct gaatatcttt ttttagcgct
     1261 ctggccaagc cgcagattat cggtttcctc acctggcggg caatcagctt taccgactca
     1321 aaatccccgg ggctggaaac cggaaagccg gcctcaagcg cgtccacccc caatttctcc
     1381 agggcaaagg caatctccag cttctctttc tggtttaaag aggcccccgg agactgctcc
     1441 ccgtcacgca aggtggtatc aaaaataata atcttatcca ttggggtcag gtctattttc
     1501 ttagcatttt ctctagaatc tgcgcctcca ggaatctccc ccggagcctc tcctcggagc
     1561 gggatgcccc ccaccctgtc tgggcctata gccctgggag ccgaaaccgc gccgcgcccc
     1621 gcgagtcggg gcaggccggg caaatgcttc aaattcctcg gccgggattt ccgggtgttt
     1681 gactataggc agctgcttcc ggataagctg ttcaatattc ttcacatctc ccttttgatc
     1741 cggggtggca aaagatatgg cccggccctt acatccggcc ctggcggtgc gcccgatgcg
     1801 atggacataa ttttccacat cttccgggag gtcgtaatta attaccacct ctatcttggt
     1861 cacatcaatg ccccgggagg cgatatcggt agccaccagg acacggtaac gcccggattt
     1921 aaaaccctcc aacgcctccc gcctctgggg gagggattta tccgaatgta tctccgcgac
     1981 ccgatgcccc atctcgcgaa tggacctgac aatcttgtgg gcgctgtgct tggtgcggat
     2041 aaacaaaagc accgagccct gatactgcga caatatcttg cttaaaaggc tgatcttggc
     2101 ctcgcgtttg acgatataaa gctcctgggt caccccctcg gcagtggtgc cggaaggcgc
     2161 catctccaca tgaacgggaa gctgcatata ggtattaacc atcttcataa tctctgccgg
     2221 catagtcgcg gaaaaaagca tggtctgcct ctggcgcggc aagagcatca atatcttttc
     2281 cacttggggg gcaaaaccca tatccagcat gcggtcagcc tcatcaataa ccagcatatt
     2341 cactctcacc atcaggatat tgcggctttc catatggtca ataaacctgc ccggggtggc
     2401 aatgataata tgcggcctgc ggcgaagcgc gtcctcctgc gggcgcatcg gagcgcctcc
     2461 gataaggcag gcagtgcgca tcccaaaagg ctgggccaat acccgcaccg cctcatcaat
     2521 ctgcagggcc agttcgcgcg taggggcaag cacaatggcc agggcgtcct tctgggccag
     2581 gcgctggatc atcgggatgg caaaggcatg ggtcttgccg gtgccggtct gggctatccc
     2641 gatcacatcc ttaccctcaa tcgccagcgg tatggcctta tactgtatcg gggtaggggt
     2701 cttaaactta atccgttcta atgtctccaa tatcctgggg gctatcccca gcccgaaaaa
     2761 acctgttccc gcgtcgggcg ctgctttttg ttcgtggtta ttctgtttca tcatatttat
     2821 caccgtaatt cctctctatt ttagtttttc cacaatcagg ctgggtcata atctcttaaa
     2881 atgaccattt tgtcattctg aaggaacaga gcgaccgaag gatcttgccg gtaatttaaa
     2941 agacgagatc cttccccttc gcttgcgctc agggtcagga tgacattgtg acacagtctg
     3001 aatactaagt taatactata tcatataatt ccgaaaataa ccaagaaaat ttcgccttgg
     3061 gctgccttag gttgtcagac gccagcagcg gtgcgccagg cggttgcggt aatcctcggg
     3121 gatggtggca ggggtcaatt caaccaattt ctttatcgga aggccttcca agcgggggct
     3181 gaaacattga tggttggtag agaagaacac ctctgaaccc gcggccatca ccttcaggac
     3241 atccttaagc aaggccggat ggtcacgatt gatatcaaaa gacaccccgc ggccatggtc
     3301 ctgaaaaaac gacggcgggt ccaccaccgc caggttaaag cgctgtccat cgtgttgcgc
     3361 ctgtttcaga tatttgaccg cgtcagattg tatcaggcta tgctgtttac cccagagccc
     3421 gtttaactcc aggttatccc gcgcccactt caggtaagta tccgaacgat ccacggtaac
     3481 tgtagtcttg gccccgccgg cagccgcggc gcaggtaaag gccccggtat atccatagag
     3541 attcaagaaa tccctgcctt cggcaagttt acccacaata acccgggtat cccgatggtc
     3601 cgaatataaa ccggtatcta agaagtcatc cagattcacc cagaaataca ggttccgctc
     3661 gcgggccttg aaacgctccc cgcgggaaga catccggcca taacgcggct ggtcctcggt
     3721 cttggtgcgg cgacgcttca tatgcgcccg ctctaagggt atgtccagga ctccggcaac
     3781 cgcctgggcc atcctgggca gccaatccgg ggtagtctgg cggcgctcat actcggcgat
     3841 cactatatgc ccggcatacc agtccaccac cgcccggacc tccgggatat cccagtcata
     3901 aaggcggaaa cactctatgc cctggcgcct gaaccgccgc gataaatggc ggaaacgttt
     3961 atgtacgcgg ttagccagta tccgggcctg actctcaatc ttttccgttt ccatttttca
     4021 aaaagaatct tcttaatctt tagcccggca agaaagccaa tataaaaagc ctacgcacac
     4081 cgccccgcca acgatattgc ctaacgaaac tacgaaaaga tttttccata cgcctaacca
     4141 tgtgacagtt tcgggatgag gtaaaaataa ggcaagcggt aaaagggtca tgttagcgac
     4201 gctatgctca aaaccgcaag cgataaaggc aaacaagcac cagaaaatca ggatacattt
     4261 cgcggcatcg ctcttagtgc ggcttgaggt ccaaatcgcg aggcagacca gccaattaca
     4321 caacaggcct ctaaaaaata gttcgcttgc cggcgcctgc atcttggcat aggctgcctt
     4381 tgccacaaaa tccgcttttg acgccatcac tcctgaaagc gcggctaaaa ccgcaagccc
     4441 gattgagcct aagaaatttc ctatccacga ccagccccac acattcaaca aatcggctaa
     4501 agtgactttc ttctccagag cccctattgc catacacata ttattcccgg taaaaagctc
     4561 tgagccggca aaaaccacta aggtcagggc aatgccaaaa gaaagcccca taactaagtt
     4621 tactgccggg gcattcgcct ctgctaaagg cgctcccacg gtaaaaatca ggattatccc
     4681 aaagcctaca tatgcgccgg caaggatact ggccactaaa taagatagcc gggatttttt
     4741 caggtatgag ctcttcgcga cactcaaagc tgccatattt tctaaagcct catgatacat
     4801 ttaaagtagc tccctcctct actgtgccct ctgatttcag tgaggtggcg ctttgcggat
     4861 cgtcaccaac ttttcatacc tattatatct ttgacggatt gcaaaggttt tcttcagagt
     4921 gagccgcacg gccgcaattc ttgcaataaa accgggcgtc tttaacaagc tcttttattc
     4981 tccccaaatc tttctgaatg attatctgac atatatgatt tttcgcatgg cagtcttgag
     5041 accccctgca ttgttgagcg tcattattac ccatacaccc ccccttattg tcctgtttag
     5101 atgc
//
LOCUS       DATDUB010000035         2947 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_2027180, whole genome shotgun sequence.
ACCESSION   DATDUB010000035 DATDUB010000000
VERSION     DATDUB010000035.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2947)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2947)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2947
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2027180"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            223..1314
                     /gene="dnaN"
                     /locus_tag="VJA84_00705"
     CDS             223..1314
                     /gene="dnaN"
                     /locus_tag="VJA84_00705"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:TIGR00663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HLD40678.1"
                     /translation="MQFKTTKEELFNRIQIVHNIVGSRVSLPILSNVLLDVSSGKLKL
                     TTTDLDIGISCEYPVETVESGTITVPTKRFADIVHELPEGPVSLTAKKNNIVTIQTEN
                     CEFKIMGMPKDEFPKLPEFKDKETLKIEQGILKDMLIKTAFAVSHDETRYVLNGILFK
                     TENNKLSLIATDGRRLALIEKNINIYTSKDINIIIPLKTITELNRNLKDNDEAIMITL
                     GDKQALFDLGTVQIISRLIEGEFPNYRQVIPEEQKEKIRLNREGFLLAVKRTIVLSTQ
                     DYQVAKLEIFKNKLVISKSTPDVGESREDMASEYAGKEMIIGFNPAYLIDALKNIQDE
                     FINLEVWDPEKPGVIRSGGYTYLVLPMRA"
     gene            1311..1619
                     /locus_tag="VJA84_00710"
     CDS             1311..1619
                     /locus_tag="VJA84_00710"
                     /inference="COORDINATES: protein motif:HMM:NF017103.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DciA family protein"
                     /protein_id="HLD40679.1"
                     /translation="MKRAAEPIGKTLEAVFKELTARQKSHQQIILEALDEFLEKEELS
                     HIQPRSLRDKTLTLRVSSPARLYVLNLKKNKLLKMLQEKLGEDIISEIFLRVGPIKQN
                     "
     gene            1638..>2947
                     /locus_tag="VJA84_00715"
     CDS             1638..>2947
                     /locus_tag="VJA84_00715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018131397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HLD40680.1"
                     /translation="MSQEEKEKKAHSYDAATIQVLEGIEAVRKRPAMYIGDTYARGLH
                     HLVYEVVDNSVDEALAGHCTKIEVAVRPDNSVSVSDNGRGIPVDIHKTEKKPAVEVVL
                     TMLHAGGKFDHAAYKVSGGLHGVGVSVVNALSEWLEVEVRRDGKIYHQRYEKGKTVSK
                     LTVIGKAKHTGTKVTFKADKEIFKAIDYSYDTLSGRLRELAFLNKGLEITIADQRHDK
                     AAEFKFSGGIVSFVDYLNQNKNPLHNKVVYFVKEKEGIILEAALQYNDGYSENIFSFA
                     NNINTIEGGTHLSGFKSALTRAINQHAKNKNILKDNIGISGEDTREGLTAVVSVKIPN
                     PQFEGQTKTKLGNSEVEGLASSVVFDSLSTFFEENPSVANKIVDKAVLSSRAREAARK
                     ARELTRRKGALESGGLPGKLADCSERDAALCELYIVEGDSAGGSA"
BASE COUNT          898 a          633 c          720 g          696 t
ORIGIN      
        1 taaaaataat aaggttaaga ccgacataga aaaaattgtc cacaggatta aacagtaaat
       61 ccataggtaa ttaaaaggtt gcgagcgcct taatttaccc ttaaaacaat gtccaattcg
      121 cgttattcac aggaagttaa ctatattatt actaatacta tttatttaat ttaaattaaa
      181 taatattaat aattgttgac cgtcttttaa accggagggg atatgcaatt taaaaccacc
      241 aaagaagaac tctttaaccg cattcagatt gtccataata ttgtcggctc cagagtgagc
      301 ttacccattc tttccaatgt ccttttagat gtctcatccg ggaaattgaa gctgactacc
      361 acggatttgg atatagggat atcctgtgaa tatcctgtgg aaactgtgga aagcggcact
      421 ataaccgttc ctactaaaag gtttgccgat attgttcacg aattacctga aggccctgtg
      481 tctttaaccg ccaaaaagaa caacatagtc accatccaaa ccgaaaactg cgaatttaag
      541 attatgggca tgcctaaaga cgaattccct aaacttccgg aatttaagga taaagaaacc
      601 cttaaaatag agcagggtat tttgaaggat atgctgatta aaaccgcgtt tgccgtttcc
      661 catgatgaaa cccgctatgt cttaaacgga atactcttta aaacagaaaa caataaactg
      721 tctttgatcg ccaccgacgg cagaaggctg gctttaattg agaaaaatat taatatctat
      781 accagtaagg atattaatat cataattccc ttaaagacta ttaccgagct aaaccgcaac
      841 cttaaagata atgatgaagc gataatgatt actttggggg ataagcaggc cctttttgat
      901 ttgggaacgg tgcagattat ctcccgcttg attgaggggg aattcccgaa ttaccggcag
      961 gtaattcccg aggaacagaa ggaaaagatc cggcttaacc gggaagggtt tttgttagcg
     1021 gtaaaaagga ccatagtctt atccacccag gattatcaag tagccaagtt agagattttt
     1081 aagaataagc tggtaatctc taagtctacc ccggatgtgg gggaatccag ggaagacatg
     1141 gcctcggaat acgccggcaa agagatgatt atcggcttta acccggccta ccttatagac
     1201 gccttaaaga atatccagga cgaatttatc aatcttgagg tctgggaccc cgaaaaaccc
     1261 ggggtcatcc gcagtggcgg atatacctac ctagtcctgc cgatgcgggc atgaagagag
     1321 cggcggagcc gataggcaaa accttagagg ccgtatttaa agagttgacc gcgcgccaga
     1381 aaagtcatca acagataatc ctggaggcct tagacgaatt tctggaaaaa gaggaattaa
     1441 gccacatcca gccgcgctcc ctgcgcgaca aaaccttaac tttgcgggta agctccccag
     1501 ccaggctcta tgtcttgaat ttaaagaaaa ataaactatt aaaaatgttg caagaaaagc
     1561 tgggagaaga tataattagt gaaatctttt taagggtagg gccaataaag cagaactaag
     1621 agttaagaga cagaaaaatg agccaagaag agaaagaaaa gaaggcgcat agttacgatg
     1681 ccgccactat ccaggtttta gagggcattg aggcagtgcg caaaaggccg gcaatgtata
     1741 tcggggatac ctacgcccgc ggcctgcacc atctggttta tgaagtggtg gataattccg
     1801 tggatgaggc tttggccggg cactgcacta agattgaggt agcggtccgt ccggataaca
     1861 gcgtcagtgt cagtgataac ggccgaggca taccggtgga tatccataag accgagaaaa
     1921 aaccggcggt ggaggtggtc ctgactatgc tgcatgccgg aggtaaattt gaccacgcgg
     1981 cttacaaggt ctccgggggc ctgcatgggg tgggggtgag cgtggtcaac gccctttccg
     2041 aatggctgga ggttgaggtc aggcgcgacg gcaagatcta tcatcagcgc tacgaaaaag
     2101 gcaaaaccgt ttccaagctc acggttatcg gcaaggccaa acataccggc accaaggtta
     2161 cctttaaagc cgataaagag atatttaagg ccattgacta ttcttatgat accttatccg
     2221 ggcgcttgag agagctggcc tttttgaata aaggcttaga gataaccatt gccgaccaga
     2281 ggcatgataa agcggcagag tttaagtttt ccggagggat tgtctctttt gtggattatt
     2341 taaaccagaa caagaacccc ctgcataata aggtggttta ttttgtcaag gaaaaggaag
     2401 ggataatcct ggaggcggcc ctgcaataca acgacggcta ttccgaaaac atcttttcct
     2461 ttgccaacaa catcaatact attgagggag gcacgcattt atccggattt aaatccgcgc
     2521 tgacccgggc tatcaaccaa catgccaaaa acaaaaatat cctcaaggac aacataggta
     2581 tcagcggaga ggatacccgc gaagggctga ccgcggtggt ttcggtgaag atccctaatc
     2641 cccagtttga aggccagact aaaaccaagt taggcaattc cgaggtggag ggcctggctt
     2701 catcggtggt ttttgattcc ttaagcacct tttttgagga aaacccttca gtcgccaata
     2761 aaattgtgga taaggcggtt ctttccagcc gggcccgtga agccgcgcgc aaggcccgcg
     2821 agcttacccg cagaaaaggc gcgctggagt ccggcggcct gccgggaaaa ttagccgact
     2881 gttccgaacg cgacgccgcg ctctgcgagc tgtatatagt ggaaggcgat tccgccgggg
     2941 gctcggc
//
LOCUS       DATDUB010000036         4981 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1860354, whole genome shotgun sequence.
ACCESSION   DATDUB010000036 DATDUB010000000
VERSION     DATDUB010000036.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 4981)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4981)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4981
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1860354"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            103..2283
                     /gene="acsB"
                     /locus_tag="VJA84_00720"
     CDS             103..2283
                     /gene="acsB"
                     /locus_tag="VJA84_00720"
                     /EC_number="2.3.1.169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013163059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA decarbonylase/synthase complex
                     subunit alpha/beta"
                     /protein_id="HLD40681.1"
                     /translation="MSKIVASAAIRGARAITKEAEDFLNKALKEHGPDARIGFPETAF
                     FLPMANALLGAEVKTIKEARDILNYAQGLLPDLPKEKLWLPYLGDTLDAGIATMLSEE
                     IITVLRYLYKQEPQADCNGFFTDTILRSLGIQLVDGRMPGFAAILGAAPTNEIAVNIV
                     RQLQERNILIFVGSSSNGRSIIDQLKESGVEMGWDSYIVPYGRDTISAIYPLNWAIRS
                     AMTFGGIKAGQARKCLLYTKERVFAFGLALWLVDDLKYATGAGVINMGFPIIADTDIP
                     EIKPSGITTYEALVKEFDYKKIVPRCIEVRGVKVKVSKIPIPVLYGAAFEGERVRREQ
                     LYCEFGGKSSQAFELIMAKDPLEIEDGKITLVGPDIDQMPPEKKSLPLGVWVEVSGRK
                     MQKEFEPILERQLHRFFNYCMGVMHIGQRDINWIRISKDAFAKGLRLKHLGIVLHAMI
                     HDEFGAIADKVQVTLYTKQEDVDKKLAEARHVYVERDERLGGMTDESVDTFYSCELCQ
                     SFAPNHICVISPEKVGLCGAYSWLDTKAAYEIAPSGGNKPIPKGECLDPLNGEWASVN
                     AYINLRSNKTLERFSMYSMINNPSTSCGCFECIMALIPEANGIMIVPRDFAGMTPCGM
                     TFTTLAGSVGGGVQTPGFLGVGKIYLTSKKFISADGGLRRVVWMPKELKEQLAEKLAK
                     RCQEIGEPDLISKIADETQAVTAEELVPFLEKVGHPALTMPSLI"
     gene            2430..2942
                     /locus_tag="VJA84_00725"
     CDS             2430..2942
                     /locus_tag="VJA84_00725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40682.1"
                     /translation="MPCLKRIAFCILIHIIIISIGNTAFSFYPYQEEADKYVSFAEAR
                     EAKGDFIRASGYWLKVIETAKPDNPALSLARQRLERIGEIIPSVKQRLLKQESARLSG
                     ETVRFKQEIPSVVSLKEPAQSCIERAKAFSKNKDYVNALKALLEAKQSDPGNEELDTL
                     LQSAMARLFP"
     gene            3201..>4981
                     /locus_tag="VJA84_00730"
     CDS             3201..>4981
                     /locus_tag="VJA84_00730"
                     /inference="COORDINATES: protein motif:HMM:NF014759.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase"
                     /protein_id="HLD40683.1"
                     /translation="MPNPRLFLIDGSGLCYRAYYAIPGLATSTGQPTGAVFGFINILN
                     KLLKKDPEYLACCFDVSKDTHRKKIYKDYKINRPSAPEEMISQIGLIKEALSAYHIPA
                     LEAEGYEADDLIASVCAKARTSGLDVVIISSDKDLLQLVEDGVSVFDPRKDKEGFVYT
                     EEEVKARFGVSPRSLLDIFALTGDPTDNIPGVKGIGEKTALGLINEFSGIHNLIEQAD
                     KIKSNSLRQAVKDNVENIRLSYELFQLKNDLEIDFNPGDFRRAQPDYARLYDLFKRLE
                     FNRLLKGLPEFGGGDDSSLREDFEPGLESLDNADNNKRAEIWDSIRKTGELFFALEAD
                     KAYFYLPEKVYSVSMEDNNFQGLLIEPGVRKIGHNLKEAKSVFLKRGIDVQGMFFDVM
                     LAGYLLEPGLAGFSLSELAFKYLDKRYLEDKLSAPGRLGLIVRLFPVLKEKLKENGLD
                     GLFYELEMPLSCVLARMERNGVKIDTPALSALSRQMEESLISLRSRIYGLNSGSEFNL
                     NSPRQLADALFNRLKLPVVKKTKTGPSTDEEVLRKLAKVHQLPALVMEYRRINKLKST
                     YVDALPDLIDPLTQRIHASFDQTGTETG"
BASE COUNT         1265 a         1110 c         1346 g         1260 t
ORIGIN      
        1 ttcgcgctga cccgtgacct gggatacgag aaggaagagt tttatttata attttgactt
       61 ttgatttttg agttttcact ttcgctatgg agggggattg atatgtctaa gattgttgcc
      121 agcgccgcga tacggggcgc cagagccata accaaagagg ccgaggattt cctgaataag
      181 gcccttaaag agcacggccc ggacgcgaga ataggttttc cggaaacggc ctttttcctg
      241 ccgatggcca atgccctgtt aggggcggag gtcaagacca taaaggaagc ccgggacatc
      301 ctgaattatg cccaaggtct cctgccggat ctgcctaaag aaaagctctg gctgccctat
      361 cttggggata ccctggatgc cggcatagcc acaatgttgt cggaggaaat aattaccgtc
      421 ttgcgttatc tctataagca ggagccgcag gctgattgca acggattctt taccgatact
      481 atcctgcgct cgttaggcat tcagctggtt gacgggagga tgcctggttt tgccgccatc
      541 ctgggggcgg cccctaccaa tgagatcgcg gtaaatatag tgcgccagct ccaggaaagg
      601 aacatcctga ttttcgtagg cagttcttct aacggcaggt ccatcattga ccagttaaaa
      661 gagtcgggag tggaaatggg ctgggacagc tatatcgtgc cttacggccg ggacactatc
      721 agcgcgatct atcctttgaa ttgggccatc cgctcggcaa tgacctttgg cgggattaag
      781 gccggacagg ccaggaagtg cctgttgtat accaaggagc gggtctttgc ttttggtctg
      841 gccctttggc tggtagatga tttaaaatac gctaccggcg ccggggtaat taatatgggc
      901 tttccgataa ttgccgatac cgatatcccg gagatcaagc cgtcggggat tactacctat
      961 gaggccttag tcaaggaatt tgattacaag aaaatagtcc cccgctgtat tgaagtaaga
     1021 ggagtcaagg tcaaggtttc taaaataccc atcccggtat tatacggagc cgcctttgaa
     1081 ggcgagaggg tgcgcaggga acagctttat tgcgagttcg ggggaaagtc ctcccaggcc
     1141 tttgaattga ttatggctaa agatcccttg gaaatagaag acggaaagat taccctggtc
     1201 ggcccggata ttgaccagat gcctccggag aagaaatccc tgcctttagg ggtctgggta
     1261 gaggtgtccg gacgcaagat gcagaaagag tttgagccta tcctggagcg gcaattacac
     1321 cggtttttca attattgtat gggggttatg catatcgggc agagggacat caactggatc
     1381 cggatcagca aggacgcctt tgccaagggt ttaaggctaa agcatctggg catagtcctg
     1441 cacgcgatga tccatgatga attcggggcc attgccgata aggtccaggt gaccttgtat
     1501 accaaacagg aagatgtgga caagaaatta gccgaggccc ggcatgtcta tgtggaacgc
     1561 gacgagcgtt taggcgggat gactgatgag agcgtggata ccttttattc ctgcgagctc
     1621 tgccagtcct ttgcccctaa ccatatctgc gtaatctcac ctgaaaaggt ggggctgtgc
     1681 ggggcctatt cctggttaga caccaaggcc gcttatgaga ttgcccccag cggcgggaat
     1741 aagcccatac ctaaagggga atgccttgac cccttaaatg gagaatgggc ttcagtcaat
     1801 gcctatatca acctgcgttc caataaaacc ctggagcggt tttctatgta ttcaatgatt
     1861 aataacccct ccacttcctg cggttgtttt gaatgcatta tggcccttat cccggaggca
     1921 aacgggataa tgatcgtgcc tcgggacttt gccgggatga ccccctgcgg aatgaccttt
     1981 actactctgg ccggttcagt tggaggcggg gtgcagaccc cgggcttcct gggcgtaggc
     2041 aagatttacc tgaccagcaa gaagtttatc tcggcggacg gcggattaag gcgggtagtc
     2101 tggatgccta aggagttaaa agagcaattg gcggaaaagc tggccaaaag gtgccaggaa
     2161 atcggcgaac ctgacctgat aagcaagatt gccgatgaaa cccaggcggt taccgcggaa
     2221 gagctggtgc ccttcctgga aaaagtcggc catccggccc tgactatgcc ttctttaata
     2281 taaaaattat cttatagttt gggaaattat aactgataag attcttcgca tagctcagaa
     2341 tcaagtaaaa tctaagcgcc agaggcagat tttacttgac tttaagggct ttttatatta
     2401 ttgttgtaaa gcaacaagcc atttctttta tgccctgtct gaagcggatc gccttttgca
     2461 tcctaatcca tataataatt atcagtattg gaaatacggc tttcagtttt tacccgtatc
     2521 aagaagaagc ggataaatat gtctcttttg ccgaagcccg cgaggccaaa ggggatttta
     2581 tccgggcttc gggctattgg ctgaaagtaa tagaaacggc caagccggat aatccggcct
     2641 tatccctggc cagacagcgc ctggagagaa taggagagat tatcccttcg gtaaaacaga
     2701 gattactgaa gcaggagtca gcccggctgt ctggtgaaac agtgcgattt aagcaggaaa
     2761 ttccctctgt tgtttcccta aaagaacccg cccaatcctg tatagagagg gctaaagcgt
     2821 tttctaagaa taaggattat gttaacgccc tgaaggcgct ccttgaggcc aagcagtctg
     2881 accccggcaa tgaagagctg gatacactgc ttcagtcggc aatggcccgg ctgttccctt
     2941 aaataataat accaccccat attaaatcaa aagtcaaaag acaaaactat tgcattcaga
     3001 ttgtgtcgca atggcaaaat actgtcattg cgagggccgc ctgcctgccg gcaggcagga
     3061 aggcccgaag caatctctat cagcgtcgga gattgcttcg tcgctcactt tgttcgctcc
     3121 tcgcaatgac ggaaagagtt tttttcaacg ctttcaattt aatttttgaa ttttgagttt
     3181 taacttttaa ctttctctta atgcctaatc ccagattatt tctgattgac ggttcagggc
     3241 tgtgttaccg ggcctattac gccatccccg gcctggccac atctaccggc cagcctacgg
     3301 gggcggtatt cggatttatc aatatcctga ataaactgct gaagaaggac ccggaatact
     3361 tagcctgctg ttttgatgtc tctaaagata cccatcgcaa gaagatctat aaagattaca
     3421 agattaatcg ccccagcgcc ccagaggaga tgatcagcca gattgggctg ataaaagagg
     3481 cgctttcagc ctaccatatc cctgcgcttg aggctgaagg ctatgaggcc gatgacctga
     3541 ttgcctctgt ctgcgccaag gccaggacaa gcggcctgga tgtggtgatc atcagctcgg
     3601 acaaggacct gttacagtta gttgaggatg gggtgagcgt gtttgaccca agaaaagata
     3661 aggaagggtt tgtgtatact gaagaggagg ttaaggccag gtttggggtt agtcccagga
     3721 gccttttaga catatttgcc ctgactggag atcctacgga taatatcccg ggggtaaaag
     3781 gaatcggaga aaagaccgcc cttggcctga taaatgagtt ttccggcatt cataatctta
     3841 ttgaacaggc ggataagata aaatccaatt ccctccggca ggcggtcaag gataatgttg
     3901 agaatatccg cttaagctat gagttgttcc agttaaagaa tgatttggag atagatttta
     3961 atcccgggga ttttaggcgc gcccagccgg attacgcgcg gctgtatgat ttgtttaagc
     4021 ggctggaatt taaccgcctg cttaagggcc tgccggagtt tggcgggggg gatgattcct
     4081 ctttgcggga ggattttgag ccaggattgg aatctttaga taacgcggac aataataaga
     4141 gagctgaaat atgggattca atccgaaaga ccggggaatt attctttgcc ctggaggcgg
     4201 ataaggccta tttttatctt ccggaaaagg tttattccgt gagtatggag gataataatt
     4261 ttcagggatt gttgatagag ccgggggtca ggaaaatagg ccataatctg aaagaggcca
     4321 agtccgtatt cctgaagcgg ggcatagatg tccaggggat gttctttgat gttatgcttg
     4381 ccggatacct gcttgagcct ggtttagccg gattcagcct ctcggagctg gcctttaaat
     4441 atttggataa aagatatctt gaggataaat tgtcagcccc gggcagattg ggcttaatcg
     4501 tcaggttgtt ccctgtcctt aaagaaaaat taaaagagaa tggtttggac gggcttttct
     4561 atgaattgga gatgcctttg tcatgtgtcc tggccaggat ggagcgtaac ggggtgaaga
     4621 tagatacccc ggccttgtcc gccttatccc ggcagatgga ggagagcctg ataagtttaa
     4681 gaagccggat atacgggctg aattcgggga gcgagtttaa ccttaattca ccccggcagt
     4741 tggctgacgc gctttttaac cgtttgaagc ttccggtagt caaaaagacc aagaccggcc
     4801 cctccacgga tgaagaggtc ttgcgcaagc tggctaaggt ccatcagctc ccggccttgg
     4861 tcatggaata ccgccggatc aataagttga agagtaccta tgtggatgcc ttgccggatt
     4921 tgattgaccc tcttacccag aggatccacg cctcttttga ccagaccggg actgaaaccg
     4981 g
//
LOCUS       DATDUB010000037         2862 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1696823, whole genome shotgun sequence.
ACCESSION   DATDUB010000037 DATDUB010000000
VERSION     DATDUB010000037.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2862)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2862)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2862
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1696823"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..487)
                     /locus_tag="VJA84_00735"
     CDS             complement(<1..487)
                     /locus_tag="VJA84_00735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40684.1"
                     /translation="MNKRVKYYLNKDGEFVIENYHLSRPFSSFFPGIAGVWGVPIWVF
                     YVNRGQAISSFGIKDKDHPVLEFRPANQAYQTASVLGFRTLIKVKAGKGKDIFYDAFN
                     SSAGKRGIERGNKMFIRSSELRLTETNPELGLETEIEYFTIPNDNYGALARKLTLRNI
                     SK"
     gene            complement(489..1097)
                     /locus_tag="VJA84_00740"
     CDS             complement(489..1097)
                     /locus_tag="VJA84_00740"
                     /inference="COORDINATES: protein motif:HMM:NF013053.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismatase family protein"
                     /protein_id="HLD40685.1"
                     /translation="MREIVFIDIDTQFDFMLPRGKLYIENSQDIIPNLKALTGAAYNN
                     EILIVSTVDRHIKADPEFKEFPPHCVAGTSGQRKIPETLSKRQVFVPGKILNKGGFFD
                     KIKSCPQVIFEKNAYDIFVNFNLWRVFRPFRAAFVYGVALDYCVKYAVSGLLQLGLEV
                     NLVTDAIKSVDPKQEKPLLARFSRNGVRLVKTKELLSQIRSL"
     gene            complement(1356..1814)
                     /locus_tag="VJA84_00745"
     CDS             complement(1356..1814)
                     /locus_tag="VJA84_00745"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HLD40686.1"
                     /translation="MLILFSAVSFAAESLPVSSKAEAALVDFSLQDLNGKTVSSADFK
                     GKPVIMFFWATWCPYCRVEIPVLAKKYNEIKENNIALLAINIGEKQDKVAKFMSQAKA
                     EFPVLLDLDSRVANSYNLLGIPTFIFINSQGKIVFQGNDLPEDYIERLKQ"
     gene            complement(1922..2593)
                     /locus_tag="VJA84_00750"
     CDS             complement(1922..2593)
                     /locus_tag="VJA84_00750"
                     /inference="COORDINATES: protein motif:HMM:NF014713.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcdA"
                     /protein_id="HLD40687.1"
                     /translation="MIAQSDTLSYLSAFLGGVLVSFSPCVYPLVPVTLGFIGVRAGSS
                     RLKGLILSLVYVLGLAVTYSVLGLIASLGGRLFGEISTHPVSFLVIGNACILAGLSFF
                     DLFSFSFSGARLANKVKRGAGYGSSFLLGMVSGLVAGPCTAPALGTILLYVANKQNLV
                     YGASLLFVFAYGMGFLLILTGTFSSFFLNLPKSEKWFSGVKKLCGFILIGIGEYFIIQ
                     AGRAM"
     gene            complement(2577..>2862)
                     /gene="cutA"
                     /locus_tag="VJA84_00755"
     CDS             complement(2577..>2862)
                     /gene="cutA"
                     /locus_tag="VJA84_00755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012545706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0010038 - response to metal ion [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="divalent-cation tolerance protein CutA"
                     /protein_id="HLD40688.1"
                     /translation="SSKEEANKIAQGLLQYKLAACVNILAGLESRFWWQGKIDSAQEV
                     LLVIKTRKTLFNKLAKKVKRLHSYTVPEIIALPIISGNKAYLDWINDCAK"
BASE COUNT          798 a          759 c          622 g          683 t
ORIGIN      
        1 gtttagagat attgcgcagg gtaagcttgc gggccaaggc tccgtagtta tcgttaggaa
       61 tagtgaagta ttctatctcc gtttccaggc ccaactccgg attggtctcg gtaagcctaa
      121 gttccgagga gcggataaac atcttattgc cgcgctctat gccccgcttg ccggctgaac
      181 tgttaaaggc atcgtagaaa atatcctttc ctttcccggc cttgaccttg atcagggtgc
      241 gaaagcccag gacggatgcc gtttgatagg cctggtttgc cggacggaac tctaaaaccg
      301 ggtggtcctt gtccttaatc ccgaaactgc tgattgcctg gccgcggttg acataaaaga
      361 cccagatcgg caccccccag accccggcga tacccgggaa aaaactggaa aagggccggc
      421 tcaaatggta attctcaatc acaaactccc cgtctttatt aagataatat ttcactcttt
      481 tattcacctt ataaactcct gatttgagat aataattctt tagtcttcac taaccggacg
      541 ccgttacggc taaaccgcgc caagagcggc ttttcctgtt ttgggtcaac cgactttatc
      601 gcgtccgtaa ccagattcac ttctaatcct aactggagca ggcctgaaac cgcgtactta
      661 acgcaataat ccaaagctac tccataaaca aacgcggccc tgaatggcct gaatacccgc
      721 cagaggttaa agttaacgaa tatatcatag gcgttcttct caaaaattac ctggggacaa
      781 cttttaattt tatcaaaaaa accgccttta ttcaaaatct tcccgggaac aaacacctgc
      841 cgcttagaca gggtttcagg aatcttcctt tgtccggatg tcccggcaac acaatgggga
      901 ggaaactcct taaattccgg gtcagccttt atatgccggt caaccgtaga aacaatcagg
      961 atctcgttat tatacgccgc gccggttaat gcctttagat taggaattat atcctggctg
     1021 ttctctatat acagctttcc cctcgggagc ataaagtcaa actgggtatc aatatctata
     1081 aagacaatct ctcgcatatt aaaagaccgt aatggccgat agtgctccgt gacataaatt
     1141 tctgctatct ataaacactt cagcttactg gcgtgggtga caaggttgtg tgtgcgcagg
     1201 gcgtacggaa atttttgcgg cttggcctcc gagcaaagcg aggagcgcaa aaatttacgc
     1261 cgagtgaggc ctgccgcagg agcaggccga acgtccctgc gaacacataa ccttggcagg
     1321 acccgcgcat tatattaaga cacaatagca acgcactact gctttaatct ctctatataa
     1381 tcttccggca ggtcgttgcc ctggaagaca atcttaccct gggaattgat aaatataaaa
     1441 gtcggtatgc ccagcaaatt gtaggaattc gccacccgcg aatccagatc taagagcacc
     1501 gggaattctg ccttggcctg gctcataaac ttagccacct tatcctgctt ctctccgatg
     1561 ttaattgcca ggagcgctat gttattttct ttaatttcat tgtatttctt ggctaaaaca
     1621 ggaatctcca cccggcagta agggcaccag gtggcccaga agaacattat caccggctta
     1681 cccttaaaat ccgccgaaga gaccgtctta ccgtttaaat cctggaggct aaagtcaacc
     1741 aaggccgcct ctgcctttga agaaacaggc agagactccg ccgcgaaaga aaccgcggag
     1801 aacaatataa gcataacctg aagaaatacc gccaggaata taaatttttg actttttccg
     1861 ccacaaaaca tggcggatcc gccaatctgt gtggcggaga cttttgactt ttgactttta
     1921 ttcacatcgc cctcccggct tgaatgataa aatattcccc tatcccaatc aagataaacc
     1981 cgcacaactt cttgaccccg gaaaaccatt tttccgactt cggcagattc agaaaaaacg
     2041 agctgaatgt cccggtgagg atcaataaaa accccatccc ataggcaaag acaaataaga
     2101 ggctcgcccc ataaaccaaa ttctgtttat tcgccacata aagcagtatt gtccccaagg
     2161 ccggggcagt gcagggcccg gccaccagcc cggagaccat tcccaaaagg aaacttgacc
     2221 catagcccgc gccccttttt actttattcg ctaaacgcgc cccgctgaaa ctaaagctga
     2281 agagatcaaa aaatgacaat cccgccagga tacaggcatt gcctatgact aagaaagaaa
     2341 ccggatgtgt tgagatctcc ccgaagagcc tgccgcctaa tgaggcaatc aggcctaaaa
     2401 cagaataggt aactgccaga cccaggacat agactaagct taagattaaa cctttgagcc
     2461 gggacgagcc ggccctgacc ccgataaacc ctaaggttac cggcaccaag ggatagacgc
     2521 agggagaaaa gctgaccagg accccgccca aaaacgcgct tagatagctt aaggtatcac
     2581 tttgcgcaat catttatcca atccagatag gccttattcc cgctgattat aggaagagcg
     2641 attatctccg gaactgtata gctgtgcagg cgcttgacct tcttggccag cttattaaag
     2701 agggtcttgc gggtcttaat gactaaaagg acctcttggg cgctgtcaat cttgccctgc
     2761 caccaaaaac gcgactccag ccccgccagg atattcacgc aggcggccaa cttatactga
     2821 agcagcccct gggcaatctt atttgcctct tctttggaag ag
//
LOCUS       DATDUB010000038         2004 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_854320, whole genome shotgun sequence.
ACCESSION   DATDUB010000038 DATDUB010000000
VERSION     DATDUB010000038.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2004)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2004)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2004
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_854320"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..973)
                     /locus_tag="VJA84_00760"
     CDS             complement(<1..973)
                     /locus_tag="VJA84_00760"
                     /inference="COORDINATES: protein motif:HMM:NF014477.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0017013 - protein flavinylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD:protein FMN transferase"
                     /protein_id="HLD40689.1"
                     /translation="MESKSQSGHPFLHTVANILVFWRSGALALSLATCLFLSGCSQRP
                     YYKETRVLMGTFVEITCQDKKAIEQAFQEIRKIEVAANNFDSSSEISRLNKDGEIKAG
                     PDLPAMVRESLKYYRLSQGAFDITVGPLARLWKERIKQADEGLKEIEIPSAEDISAAL
                     VLTGLDKIILDEARSVIKFSRPGVEIDLGGIAKGYAVDKAVTRLRELGVTSAMVNAGG
                     NIYCLGKKYSRKWRIGIQHPRWPEGRGWASDSPSQKPQEILFYLELENHAVATSGDYQ
                     QYFSAKGKHYSHIIDPKTGYPVDNGVISATIIALDAVSSDALSTSVFV"
     gene            complement(975..>2004)
                     /locus_tag="VJA84_00765"
     CDS             complement(975..>2004)
                     /locus_tag="VJA84_00765"
                     /inference="COORDINATES: protein motif:HMM:NF014826.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DNA polymerase/3'-5' exonuclease PolX"
                     /protein_id="HLD40690.1"
                     /translation="KINQGRAQVDLRVVEKRSYGAALVYFTGSKAFNIKLRQMAIKKG
                     LKVNEYGVFKVKGGKETYLCGQSEEEVFKALGLPDIEPELREDTGEIEAALKNKLPKL
                     LSLKDIKGDFHCHSRYSDGNNSILEMAEAAKALGYQYINISDHSQSLKVAGGLSLEDL
                     KKKKAEIDKLNAQLKGFRILFGTEVDIDSLGKLDYPDSILAEFDLVVAAIHSGFKQSK
                     KQITKRLVRACKNKNVDVIAHPTGRLWGSREPYEIDWEEFFQAALDCRTALEINAYPL
                     RLDLNDLNCRRAKEKGIRLVISTDSHTTDQLKYMHLGVSTARRGWVTKADVINTLPYE
                     EVKNLFRK"
BASE COUNT          487 a          556 c          424 g          537 t
ORIGIN      
        1 ggacaaaaac cgaggtgctc aaggcatcag aggagacagc gtccaaagct attattgtcg
       61 cagaaattac cccgttgtca accggatatc cggttttagg gtcaataata tggctgtaat
      121 gtttaccctt agcagaaaaa tactgctggt agtcaccgga ggtagccact gcatgatttt
      181 ccagctccag ataaaagagt atctcttgtg gtttctggct tgggctatct gaagcccaac
      241 cacggccctc tggccagcgt ggatgctgga tgccgatacg ccatttccgg gagtatttct
      301 ttcccaaaca atagatattt cccccggcat taaccatagc cgaggttacg cctaactccc
      361 taagccgggt aacggcttta tccacggcat aacctttggc aattcccccc aaatcaattt
      421 ccacccccgg ccggctgaac ttaatcacag accgggcttc atccaggata atcttatcca
      481 agccggtaag aacaagcgcg gcggagatat cttccgcgga cgggatttct atctccttta
      541 acccctcatc cgcctgttta atcctttcct tccacaacct ggccagcggc ccgaccgtaa
      601 tgtcaaaagc cccttgactt agacgataat atttcaagga ttccctgacc atagccggca
      661 aatccggccc ggccttgatt tcaccgtctt tgttcagccg ggatatttcc gaagaagagt
      721 caaaattatt tgccgctact tcaattttac ggatttcctg aaaagcctgc tcaatcgcct
      781 ttttatcctg gcaggtaatc tccacaaagg tgcccattaa aacccgcgtt tccttatagt
      841 agggcctttg ggaacaaccg gataaaaata agcaggtagc caaggagagc gccagagcgc
      901 cagagcgcca gaacaccagg atattagcaa ccgtatgtaa aaacgggtgg ccagattgtg
      961 atttactctc catcttattt cctgaacagg tttttcactt cctcatacgg cagggtgttt
     1021 atcacatcgg ccttagtaac ccagccccgc cgcgcggtgg aaacccccag atgcatatac
     1081 ttgagctggt ccgtggtatg cgagtccgtg gatataacta accttatccc cttttctttt
     1141 gcccggcggc aattgaggtc attcagatcc aggcgcaaag gataggcatt gatttccaag
     1201 gctgtccggc aatccaaagc cgcctgaaaa aactcttccc agtctatctc ataaggctct
     1261 ctgcttcccc agagccttcc ggtaggatgg gcgataacat ccacattctt atttttacag
     1321 gcgcggacta agcgcttggt tatctgcttc ttggactgct taaacccgct gtgtattgcc
     1381 gccaccacca ggtcaaattc cgccaggata gaatccggat aatctaattt tcccagcgaa
     1441 tcaatgtcca cctccgtccc gaagagaatc cggaaacctt taagttgagc gtttaattta
     1501 tctatctccg cctttttctt ctttaaatct tccagcgata atcccccggc aacctttaga
     1561 ctctgggagt ggtcgctgat attaatatat tgataaccta aggccttcgc cgcctcggcc
     1621 atctctaaga tgctgttatt accgtcggaa tacctggagt ggcagtgaaa atcacctttg
     1681 atatccttta aagacaaaag cttaggcagt ttatttttaa gggcggcctc tatttctcct
     1741 gtgtcttcgc gcagttccgg ctcaatgtcc ggcaggccca gggccttaaa tacctcttct
     1801 tcgctttgac cgcagagata ggtctcctta ccgcctttga ccttaaagac cccgtattcg
     1861 ttgaccttca aacctttctt tatcgccatc tgacggagct tgatattaaa ggcctttgag
     1921 ccggtaaaat aaaccagggc cgcgccataa cttcttttct ccaccacccg taaatccacc
     1981 tgggcgcggc cctggtttat ttta
//
LOCUS       DATDUB010000039         3058 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1027320, whole genome shotgun sequence.
ACCESSION   DATDUB010000039 DATDUB010000000
VERSION     DATDUB010000039.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3058)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3058)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3058
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1027320"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..408
                     /locus_tag="VJA84_00770"
     CDS             <1..408
                     /locus_tag="VJA84_00770"
                     /inference="COORDINATES: protein motif:HMM:NF013283.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="BamA/TamA family outer membrane protein"
                     /protein_id="HLD40691.1"
                     /translation="CLSDAYWDSSSVPIYERFYAGGAYSIRGYHERKIGPIDTVSNDP
                     IGGESMLIANVEYLYPLADFIKAAVFYDLGNVWSKVYKFASGGYKSGTGLGLRVKTPI
                     GPLRLDYGFPMNKEPGEPEKGKGRFHFSLSHGF"
     gene            597..1124
                     /locus_tag="VJA84_00775"
     CDS             597..1124
                     /locus_tag="VJA84_00775"
                     /inference="COORDINATES: protein motif:HMM:NF015871.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpH family outer membrane protein"
                     /protein_id="HLD40692.1"
                     /translation="MKKIFAAVMIMAFGILSLSSVYAAAEKFGSVDVGKLFDQYEKTK
                     EYSKSLEDKASSYEKERDVKLSEIKQMQDKLNLLSDAEKEKKQKEIDDLIKSAREFAM
                     NRETDLKKEGDDRLKEVAKDIEDAVSEYAKKEGYTMVFNERVFVYSNKANDITSKVFE
                     LLQARNKKDKTAKKQ"
     gene            1160..2191
                     /gene="lpxD"
                     /locus_tag="VJA84_00780"
     CDS             1160..2191
                     /gene="lpxD"
                     /locus_tag="VJA84_00780"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007938992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016410 - N-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HLD40693.1"
                     /translation="MRSTLGEIARLLDAELVGDPAVVITGLSGIKEAKEGDITFLANS
                     RYAGLADETRASAIITSKEYLPSLKKPVIKTENPSLAFTKIAEYLWPRGLYHPRGVHP
                     SAIVGEGVSLGNNVSLGAYAVISDAVHIGDNSIIYPGCFIGGESIIGRDCLIYPNVTI
                     REKTTIGDRVIIHSGSVVGSDGFGFVNLDGRHQKIPQTGIVEIEDDVEIGSNVSIDRA
                     RFDKTIIGKGTKIDNLVHIAHNVVVGENCLIIAQAGISGSTTIGNNVTLAGQAGLVGH
                     ITVGDGAIVAAQGGVTKSVPANTVVSGYPARPHNEAKRINACVSRLPELYKTIWELEK
                     KVKQLEDRK"
     gene            2284..>3058
                     /gene="lpxC"
                     /locus_tag="VJA84_00785"
     CDS             2284..>3058
                     /gene="lpxC"
                     /locus_tag="VJA84_00785"
                     /EC_number="3.5.1.108"
                     /inference="COORDINATES: protein motif:HMM:NF015299.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008759 - UDP-3-O-[3-hydroxymyristoyl]
                     N-acetylglucosamine deacetylase activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-acyl-N-acetylglucosamine deacetylase"
                     /protein_id="HLD40694.1"
                     /translation="MENLQKTIKNPVSISGTGIHTGNKVNLRFKPAEINSGISFTRLD
                     LPGKPEIKVDCANLSETYQSLRRTTLAVSGAEVQTVEHLTAVLCALQIDNLIIEIDSA
                     EIPGMDGSAGEFLSVLKNAGIVQQDAARKYFSLKEPIFVEEGPAKAAAFPANDFSICY
                     TLDYNHPFLKSQYKEIFISPEAFESEIAQARTFCLKEEADDLQEKGLGKGATYQNTLV
                     VGEKEVIKNTLRFPDEFVRHKILDLIGDLYILGMPIKARI"
BASE COUNT          842 a          650 c          833 g          733 t
ORIGIN      
        1 tgtttaagcg atgcctactg ggattcttct tcagtgccta tttacgagcg gttttatgcc
       61 ggaggggcct attccatacg cggttatcac gaaagaaaaa tcggccccat agatacggtt
      121 tccaatgacc ctatcggggg cgaatcaatg ctgatcgcta acgtggaata tctatatcct
      181 ttggcggatt ttatcaaggc cgcggttttt tatgatttgg gaaatgtctg gtctaaggtg
      241 tataaattcg cctccggcgg atataagtcc ggaaccggcc tgggcttaag ggtcaagacc
      301 ccaatcgggc ctttaaggtt ggactatggt ttcccgatga acaaagagcc gggcgagccg
      361 gaaaaaggca agggcaggtt tcatttcagc ttgagccacg gtttttaagg taaggataat
      421 ttgcgtaatg tttaatgtgt aacgtgtaat gttggtgtaa tgggtaattg tgtgatggaa
      481 ttacaaaatt atttttccat tccacattgc aacattacac caacattaca cataaaactt
      541 tacacattac acagaactta ttgacggtta acatattata cgaggaggat taaaagatga
      601 agaagatttt tgcggcggtt atgataatgg cattcgggat tttatcttta agttcggttt
      661 atgccgcggc ggagaagttc ggctcggtgg atgtgggcaa gctttttgac caatacgaga
      721 agaccaagga gtattctaaa agccttgagg ataaggcctc aagttatgaa aaggaaagag
      781 atgtcaagct ctccgagatc aagcagatgc aggacaaatt aaaccttctc tcggacgccg
      841 aaaaggaaaa gaagcagaag gagatagacg acctgattaa gtccgcccgc gagttcgcga
      901 tgaacaggga aacagactta aaaaaggaag gcgacgacag gcttaaggag gttgccaagg
      961 atatagagga cgcggtttcc gaatatgcca agaaggaagg ctacacgatg gtttttaacg
     1021 agcgggtctt tgtttacagc aataaggcca atgatataac ttccaaagtt tttgaattac
     1081 tgcaggccag gaataagaag gataaaacgg ctaaaaagca gtagggaacg gttttaaacc
     1141 gtttcctaca aactgtgaaa tgcgcagcac attgggtgaa atagcccggc tccttgacgc
     1201 ggaattagtc ggggatcccg cggtggtcat taccggctta agcgggataa aagaggccaa
     1261 agaaggggat ataaccttcc tggccaatag ccgctatgcg ggcctggccg atgagacccg
     1321 ggcctcggcg atcattacct ccaaagagta tctcccgtcc ctgaaaaagc cggttatcaa
     1381 gactgaaaat ccttccctgg cctttacaaa aatagcggaa tatctctggc cgcggggcct
     1441 ttatcatccc cggggcgtcc acccgagcgc gattgtcggg gagggggtat ctttagggaa
     1501 taatgtttct ctgggggcat acgcggtaat ttccgacgct gtccacatag gggacaatag
     1561 tataatctat cccggatgtt ttatcggcgg ggaatctatt atcggccggg actgcctgat
     1621 ttatcccaat gtcactatta gagagaagac tacgataggc gacagggtga ttattcatag
     1681 cggctcggta gtcggttctg acgggtttgg ttttgtcaat ctggatggcc ggcatcagaa
     1741 gataccccag accgggattg tagagataga ggatgacgta gagatcggct caaatgtcag
     1801 cattgaccgg gcccgttttg acaagacgat tatcggcaag ggcaccaaga ttgataacct
     1861 tgtgcatatc gcccataatg tggtagtcgg agaaaactgc ctgatcattg cccaggccgg
     1921 gatttccggc agtaccacaa tcggcaataa tgtgaccctg gccggccagg cgggcttagt
     1981 cggtcatatt acggtgggag acggggctat agtcgcggcc cagggcgggg tgactaagtc
     2041 tgtgccggct aataccgttg tttcgggtta tccggcccgg cctcacaatg aggccaagag
     2101 gatcaatgcc tgcgtcagcc gcctgccgga gctttataag actatctggg agttggagaa
     2161 aaaggtcaag cagttagaag atagaaaata agggtcaata gtcgatagtc tatagtcaat
     2221 aaaaaaggaa accatcggct atcggccata gactatagac ccataattat ttacaggtca
     2281 aatatggaaa atcttcaaaa gacgattaaa aatccggttt caatatccgg gaccggcata
     2341 cacaccggaa ataaggttaa tctgcgtttc aagccggcag agataaactc cgggatcagc
     2401 tttacgcgcc tggatcttcc cggtaaaccg gagataaagg tggactgcgc caacctctcg
     2461 gaaacttatc agagcctaag gcggaccacc ctggctgttt ccggggccga ggtccagact
     2521 gtggagcatc ttaccgcggt cttatgcgcc ttgcagatag ataacttgat tattgagatt
     2581 gactccgcgg agatccctgg aatggacggc tccgctggag agttcttaag cgtcttaaag
     2641 aatgccggca ttgtccagca ggatgcggcc aggaaatatt tctccctaaa agagccgata
     2701 tttgttgagg aaggcccggc caaggccgcg gcatttccgg ccaatgactt tagcatttgt
     2761 tataccctgg attataatca tccgttcctg aaatcgcagt ataaagagat attcatcagc
     2821 ccggaggctt ttgagtccga gattgcccag gccaggacat tctgccttaa ggaagaggcg
     2881 gatgacctgc aggaaaaggg tttaggtaag ggggcgactt atcagaatac cctggtggtg
     2941 ggagagaaag aggtaatcaa gaataccttg aggttcccgg atgagtttgt ccggcataag
     3001 atcctggatc tgatcggcga cctttatatc ctggggatgc ctatcaaggc ccggataa
//
LOCUS       DATDUB010000040         2595 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1028500, whole genome shotgun sequence.
ACCESSION   DATDUB010000040 DATDUB010000000
VERSION     DATDUB010000040.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2595)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2595)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2595
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1028500"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(70..879)
                     /locus_tag="VJA84_00790"
     CDS             complement(70..879)
                     /locus_tag="VJA84_00790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40695.1"
                     /translation="MLSKKKNILLSLSLAVVFISVVYIIVFLNLKPAQNQLVLVRDID
                     LEELDNREALNKYTGEKIVYNVRMGNVTLGKSVFNRLQPVELDGKMVNLMSFETRLAR
                     FSDKEKIYSAAGTFLPLKIEREISNWPFLEKISEQYDQDKFTLTIIKTKGKVSEERVI
                     RKDGPIHNSIILPFVLRDIPELAVGWSMAANLPGQKFEIKLSSLKTLKLPAGEFKAYH
                     FESNPSKFEIWVSADERRIPLKIKGAGPLGYTLVMKEYKLGNNNGSMVDSR"
     gene            complement(933..1490)
                     /locus_tag="VJA84_00795"
     CDS             complement(933..1490)
                     /locus_tag="VJA84_00795"
                     /inference="COORDINATES: protein motif:HMM:NF024067.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3786 domain-containing protein"
                     /protein_id="HLD40696.1"
                     /translation="MSYQVAVEKGWKELADLADADSYSVGLMGDTYEVNLKDKSVFSD
                     SCNIPAKEYVALLILHYLIGSFKNAFIPSGEWVSFKDIPGGEIYYPAFRDGVIEALLR
                     KYGKNPQGLFGVLERFKGAKKVEDIGDAAIEIETFPEIKVRVVLWQADEEFGAEAGLL
                     FDRNLTRIYSMEDITVFSHFVVNSL"
     gene            complement(1494..2195)
                     /locus_tag="VJA84_00800"
     CDS             complement(1494..2195)
                     /locus_tag="VJA84_00800"
                     /EC_number="5.4.99.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR00093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine synthase"
                     /protein_id="HLD40697.1"
                     /translation="MRLQVFLSHSRVCSRRKALELVQAGRVSVQGKVITEPSYEVSAD
                     APDIRLDGRKVELGGKDYLILNKPRGVVTTLQDKYAQATVLEFLPKAYKHLYPVGRLD
                     KDSEGLLLFTNDGDLAFKLLHPSFKVDKVYYVETDKPLKANDARCLENGVFIEGRKTA
                     PAKIVPQGKDSFRITIHEGRKRQIRLMLSSLGFQVRRLSRIKYGPISLGDLKAGQWRL
                     LDKKEIESLRSDTGG"
     gene            2217..2513
                     /locus_tag="VJA84_00805"
     CDS             2217..2513
                     /locus_tag="VJA84_00805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40698.1"
                     /translation="MNLPVFAANVDFSQSSFRIFGCGYRKPHHGPLASGNPDAPTYSR
                     SNIGTTRMFELFLPEQKQLVPQPPKIRKNFGGYPPKAGGKIDLSEKTDRFFILG"
BASE COUNT          663 a          709 c          544 g          679 t
ORIGIN      
        1 ccaggtagaa atcaataaat cttgggtcta tagccgatag tctatggtct atggtctttt
       61 ttctatcaac tatcgactat cgaccatcga cccattatta tttcctaatt tatattcctt
      121 catcaccagt gtatacccca atggcccggc cccctttatc ttcaagggaa tcctgcgctc
      181 atcagcgctg acccaaatct caaatttaga gggattactc tcaaaatgat aggccttaaa
      241 ttcgcctgcc ggcagtttca atgtcttcag agagcttaat tttatctcaa acttctggcc
      301 cggcagattc gcggccatag accagcctac agccaattcc gggatatcgc gcaggacaaa
      361 aggaagaatg atgctattgt ggataggacc gtcttttctg attacgcgct cttctgacac
      421 ttttccttta gttttaatta tcgtaagagt gaatttatcc tggtcatatt gttcgctgat
      481 tttctccaga aacggccaat tggagatttc cctctctatc ttgagcggca ggaaggtgcc
      541 cgcggcgctg taaatcttct ctttgtcgga aaacctggct aagcgggtct caaaactcat
      601 caggttcacc attttgccgt ctaattcaac cggctgcagg cggttgaata cggatttccc
      661 cagagtcaca ttgcccatgc gcacattata aactatcttt tccccggtat atttgtttaa
      721 agcctcccta ttgtccaatt cctcaagatc aatatcccgg accaaaacca gctggttctg
      781 cgccggcttt aaattcaaaa agacaatgat ataaacaaca gaaataaaaa ccactgccag
      841 cgatagggat aataatatat ttttcttctt ggaaagcatt agttctaatc agtcttggcc
      901 gcggggaggt gtcccgcgcc ttatattcat agttaaaggc tattcaccac aaaatgcgag
      961 aatacggtga tgtcctccat agaataaatc ctggtcaggt tgcggtcaaa gagcagtccg
     1021 gcctccgccc caaactcctc atccgcctgc cacaaaacca cccgcacctt gatctccgga
     1081 aaagtctcaa tctcaattgc cgcgtctccg atatcctcaa ccttcttggc ccccttaaac
     1141 ctttccagga ccccaaaaag cccctgggga tttttcccgt atttcctcaa caaggcctca
     1201 ataaccccgt cccggaaggc cggataatag atttctccgc ccggtatatc cttaaaagaa
     1261 acccactccc cgctggggat aaaggcattt ttaaaagacc cgatcaaata atgcaatatc
     1321 aataacgcca catattcctt ggccgggata ttgcaggaat cggagaagac gctcttatcc
     1381 ttaaggttga cctcgtaagt atctcccata aggccgaccg aataactatc ggcatcggcc
     1441 aggtccgcta attccttcca ccctttttct accgctactt ggtaagacat cgctcaccct
     1501 cctgtgtcgc tgcgcaaaga ctcaatctct tttttgtcca acaaccgcca ttgcccggcc
     1561 ttcaaatcgc ctaagctgat cggcccatac ttaatccggg ataggcgccg aacctggaat
     1621 cccaaactgg aaagcataag ccggatctgc cgctttcttc cttcatgaat ggttatccta
     1681 aaagagtcct tgccttgcgg gactatcttt gccggagcgg ttttcctgcc ttcaataaac
     1741 accccgtttt ctaaacaacg ggcatcattc gccttaagcg gcttgtccgt ttcaacataa
     1801 taaaccttgt ccactttaaa gctgggatgc aaaagcttaa aggcaaggtc tccatcattg
     1861 gtaaacaaaa gcaggccttc ggaatcctta tccagccggc ccaccggata tagatgctta
     1921 taggctttgg gtaaaaattc taaaactgtg gcttgggcgt atttatcctg cagggtggta
     1981 actactcccc tgggcttatt gagaataaga taatccttgc cccctaactc cactttcctg
     2041 ccgtctaagc ggatatccgg cgcgtcagcg ctgacctcat aagacggctc ggtaattacc
     2101 ttcccctgga cgcttaccct gccggcctgg accagctcca gggcctttct ccgggaacaa
     2161 acccggctat gcgacaaaaa tacctgcaag cgcataagct tatactaagg aaaataatga
     2221 atctgccggt tttcgcagcg aatgtcgatt ttagccaaag cagctttcga attttcggct
     2281 gcggctatcg gaagccgcac cacggccctc tggccagcgg gaatcccgat gctccgactt
     2341 atagtcggag caatatcggg acgacgagga tgtttgagct gtttttgcca gagcaaaaac
     2401 agctagttcc gcagccgccg aaaatacgaa agaactttgg cggctacccg ccgaaggcgg
     2461 ggggcaaaat cgacctgagc gagaaaacag acagattctt tattttaggt taaccttatg
     2521 cgcttgcagg tctttttgtc gcatagccgg gtttgttccc ggagaaaggc cctggagctg
     2581 gtccaggccg gcagg
//
LOCUS       DATDUB010000041         2717 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_526475, whole genome shotgun sequence.
ACCESSION   DATDUB010000041 DATDUB010000000
VERSION     DATDUB010000041.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2717)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2717)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2717
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_526475"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..251
                     /locus_tag="VJA84_00810"
     CDS             <1..251
                     /locus_tag="VJA84_00810"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40699.1"
                     /translation="ARAIERKSSESALNILADLFANGERPERILGALRYQFVRPGASP
                     GENRNKIQLLLETDNNLKTGRIKPVFALEALVVKLCRA"
     gene            complement(232..519)
                     /gene="rpsT"
                     /locus_tag="VJA84_00815"
     CDS             complement(232..519)
                     /gene="rpsT"
                     /locus_tag="VJA84_00815"
                     /inference="COORDINATES: protein motif:HMM:TIGR00029.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000312 - plastid small ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HLD40700.1"
                     /translation="MAQRRRQSLKAQRKDKKRHQRNIKIKSGLKKTLKKLQGFITEKK
                     LEEAKKTLKETVSQLAKAAKKKIMHSNTAKRKISRLSKKVSGLEAPKPGRA"
     gene            720..2264
                     /gene="murJ"
                     /locus_tag="VJA84_00820"
     CDS             720..2264
                     /gene="murJ"
                     /locus_tag="VJA84_00820"
                     /inference="COORDINATES: protein motif:HMM:TIGR01695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0034204 - lipid translocation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="murein biosynthesis integral membrane protein
                     MurJ"
                     /protein_id="HLD40701.1"
                     /translation="MSTNKAIARSASVIGAFTLFSRILGFIRDVVIARMFGTGMYSQA
                     FVVAFRIPNLLRDMVAEGAVNAAFVPVFSVYAAKKSKEEFWHLANCLLNILLVILAAL
                     TILGVVFSPWIVRLIAPGFSADILKFQETVRLTRIIYPYLLLVALSAYSMGILNSLRH
                     FSLPAFAPCLLNISIIVFAVIYGETTLGLALGVLAGGVLQLAVQAPMLYKKGFRYRPA
                     LELSHPGIRQIGRLIVPRIFSSCVYQLNLFVDTILGSLVQIVGQGAISALYFANRIFQ
                     FPLGIFGIAIAQAALPSLSRQALENNLDNFKKTLNFSLVAVFLIMLPVSSLIVVLAKP
                     IVAALFGGGRFDAYSTEITAGALLFYALSLSFYCANKVLVSGFFSLKDTKTPLKITAA
                     SLLVNIVFNLILMYPLKLKGLALATSLSGVINFLVLFYSLRKKIGPLNGRYLSRVFAK
                     ILFSSLIASGASFYVYARCLVSAPPLVRVSAAALSGLAIFVLGALILDLAEIKKVIQW
                     VLRKKY"
     gene            2294..>2717
                     /locus_tag="VJA84_00825"
     CDS             2294..>2717
                     /locus_tag="VJA84_00825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002702925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HLD40702.1"
                     /translation="MISVNNVSLQLGQRRLFSEVNIVFSPGNCYGLIGANGSGKSTFL
                     KILSGEVESTSGEVVIAAGKRVSTLRQDQFAFDEYTVLTTVIMGHKKLYEIMLAKDAL
                     YSKTPFTEADGMRAGELEGEFSELQGWNAESDAAKLLSE"
BASE COUNT          591 a          603 c          679 g          844 t
ORIGIN      
        1 tggcccgggc aattgagcga aagagctcgg agagcgccct taatatactg gcggatttat
       61 tcgcgaatgg agaaaggccg gagaggatac tgggggcctt gcgttatcag tttgtccgtc
      121 cgggggcgag tcccggggaa aaccggaata agatacaact gcttttagaa acggataata
      181 atttaaagac cggcaggatc aagccggtct tcgcgctgga ggccttggtg gttaagctct
      241 gccgggctta ggcgcttcaa gcccggagac tttcttgctt aagcgggaga tcttgcgttt
      301 ggcggtgttg gagtgcataa tctttttctt ggccgccttg gctaactggg aaacagtctc
      361 tttcaaggtt ttcttggcct cttccagctt tttctcggta ataaaaccct ggagtttctt
      421 gagggttttc ttgagcccgg acttaatttt tatgttgcgc tggtgccttt ttttgtcttt
      481 gcgctgcgcc tttaatgatt gccttctgcg ttgggccatt aaatcctccg tttaagtaat
      541 tgtagattga tgtttaaaaa ccctaaatcc gaaactctaa atcctaaaca aactcaaaac
      601 tataaactcg aaatccaaaa caaatttttg agtttgaagt ttgcgatttt ggatttgttt
      661 agagtttagg gttttgaatt tagagtttat aaatttatat ataccatatc tgctgaatta
      721 tgtcaaccaa taaagctata gccaggtctg cctccgtaat cggggccttc acccttttct
      781 cccggatttt agggttcatc cgggatgtgg tgattgcccg gatgttcggc acgggcatgt
      841 attcccaggc ctttgtggtt gctttcagga tccccaatct cttacgggat atggtggcgg
      901 agggggcggt gaacgcggcc tttgtcccgg tatttagcgt ttacgcggcc aaaaaatcca
      961 aagaggaatt ctggcatttg gctaattgtt tattgaatat cctcctggta atcttggcgg
     1021 cgcttactat cctgggggtg gtgttctctc cctggattgt gcgcctgatt gcccccgggt
     1081 ttagcgccga tatattaaag tttcaggaaa cagtcaggct taccaggatc atctatccct
     1141 atttattgct tgttgccttg agcgcctatt ctatggggat attgaattct ttgaggcatt
     1201 tcagccttcc ggcctttgcc ccctgccttt tgaatatttc tataatcgtc ttcgcggtta
     1261 tttacggaga aacaaccctc ggcctggccc tgggggtcct ggcaggcggg gtattacagt
     1321 tagcggtgca agcgcctatg ctttataaaa aaggattccg ctatcgtccg gcgctggagc
     1381 ttagtcatcc cgggataagg caaatcggga gactgattgt ccccaggata ttcagttcct
     1441 gcgtttatca gcttaatctc tttgtggata ccatactcgg ctctttggtc caaatcgtag
     1501 gccagggcgc gatttcagcc ttgtatttcg ctaaccgtat ttttcagttc cccttaggca
     1561 ttttcgggat agctattgcc caggcggcct tgccctcctt atcccgtcag gcgctggaga
     1621 ataatctgga taattttaag aagacgctga acttttcctt agttgccgtt ttcttgatca
     1681 tgcttccggt ttcaagccta atagttgttt tggctaagcc gatagtcgcg gccttgtttg
     1741 gcggggggag atttgacgct tattccaccg agattaccgc cggagcgctt ttgttttacg
     1801 ccttatcctt aagcttttac tgcgccaata aggtgctggt ctcgggattt ttttctctta
     1861 aagacactaa aaccccgctt aagataaccg cggcctcgct cttagtcaat atcgttttta
     1921 atcttatcct gatgtatcct ttaaaattaa agggcctggc cctggctacc agcttatccg
     1981 gagttattaa ctttctcgtc cttttttatt ctttgagaaa aaagatcggc ccgctaaacg
     2041 gccggtattt aagccgggtt ttcgctaaga tactcttttc ttctttgata gcttccgggg
     2101 caagttttta tgtttatgcc cggtgtttgg tcagcgcccc gcctttagtg agggtaagcg
     2161 ccgcggcgct ctccgggctg gcaatttttg tcttgggagc gcttatccta gatttggctg
     2221 aaatcaaaaa ggtcatccaa tgggtattga gaaaaaaata ttaaatttta tgaaaggtta
     2281 aaggtgcgag aatatgattt cggttaataa tgtgtctttg cagttaggtc aacgcaggct
     2341 tttctccgaa gtgaatattg ttttttctcc cggtaattgt tatggcctga tcggcgccaa
     2401 tggttcgggc aagtccacat ttttaaaaat cctctccggc gaggttgagt caacttccgg
     2461 cgaggtcgtg attgccgcgg gtaagagggt ctccacctta cgacaggacc agtttgcttt
     2521 tgatgaatat acggtattga ccacggtgat tatggggcat aaaaagctct acgagattat
     2581 gctggccaaa gacgccctgt attccaagac cccttttacc gaagccgacg gaatgcgcgc
     2641 cggggagctt gagggagagt tctctgaact tcagggatgg aacgctgaat ccgacgcggc
     2701 caaattgtta agtgaac
//
LOCUS       DATDUB010000042         3656 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1700249, whole genome shotgun sequence.
ACCESSION   DATDUB010000042 DATDUB010000000
VERSION     DATDUB010000042.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3656)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3656)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3656
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1700249"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(241..1263)
                     /locus_tag="VJA84_00830"
     CDS             complement(241..1263)
                     /locus_tag="VJA84_00830"
                     /inference="COORDINATES: protein motif:HMM:NF024878.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing phosphohydrolase"
                     /protein_id="HLD40703.1"
                     /translation="MLSTIHTVYRLINSTYDLKNLILRLAKLTSQTLGAQTCSIVILD
                     PGNKKITLRCATRPNAKCVIDKTKGLRAYSSIERHIIHKSSVIRNNSTLAIPLIADDL
                     IGMIILKRRANDLPFDSYDQEILMTLGEQAVIGIRNLQLYEEQQKIILGSIKSLVTLF
                     DTRVPCAYTHSPYFSRLVCAIGREMRLDEKDIQSLKFASLLHDAGKVDIPIEILTKSS
                     GLTEKEFSIIQGHPVKGAKILRHLEAIRPAIPIILHHHEKFNGTGYPSRLKGRKIPLG
                     ARIMAVADAFEAMIYGRPYRERVRISQALKEIRHKSGSQFDPHCIEAFFKAIKKLNLK
                     KYLQNN"
     gene            complement(1268..2419)
                     /locus_tag="VJA84_00835"
     CDS             complement(1268..2419)
                     /locus_tag="VJA84_00835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004513342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016793 - triphosphoric monoester
                     hydrolase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyguanosinetriphosphate triphosphohydrolase"
                     /protein_id="HLD40704.1"
                     /translation="MTNYLKNWEDKNLSPYAAKSFSSRGRAHKEKEHLYRGCYQRDRD
                     RIIHSAAFRRLEYKTQVFVNHEGDYYRTRLTHTLEVSQIARTIASRLGLNCDLVEAVA
                     LAHDLGHTPFGHSGEEALDELMSDFGGFNHNLQGLRIVDKLEERYPEFPGLNLSWEVR
                     EGIIKHSTFYDKMGRLEEFHPEKMPTIETQVVDIADEIAYNNHDLDDGLTSGLIEETK
                     LRKNRLWNMLSTKVYSRYGAIKPQLKKYQIIRLLIDAQVTDLIKETQKKIKKAKVQSA
                     EDALNLDYKLVSFSPDMEALRLPLKDFLMRELYRNYRVVRMSDKAKRFITELFKLYLN
                     SPQQLPEETGGRIQSGEDTRRVICDYIAGMTDRYALDEYKKLFDPYEKV"
     gene            complement(2388..2870)
                     /locus_tag="VJA84_00840"
     CDS             complement(2388..2870)
                     /locus_tag="VJA84_00840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015283587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT domain-containing protein"
                     /protein_id="HLD40705.1"
                     /translation="MDKLWAPWRINYISNAKKQKGCLFCRTSKSSLDRKNLIILRSRH
                     VFVMLNKFPYNNGHLMAAPYRHIKDLKSLTQEEILDMFSTLNNIQDILKKTLNPAGFN
                     IGINAGRSAGAGIPGHLHIHIVPRWKEDTNFMPVVFDTKIISQSLDELYDKLSKKLGR
                     "
     gene            complement(2873..3361)
                     /locus_tag="VJA84_00845"
     CDS             complement(2873..3361)
                     /locus_tag="VJA84_00845"
                     /inference="COORDINATES: protein motif:HMM:TIGR00040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042578 - phosphoric ester hydrolase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase family protein"
                     /protein_id="HLD40706.1"
                     /translation="MRIIVLSDTHIPGRAKDLPEEVYAQIKGADLLIHAGDITSAAFF
                     KKMEKIKPGIKAVSGNMDEGVLKDSLPNKLLFKAGNFYIGVVHGGGSPFGLMDWCEKE
                     FQKEKPDLIIFGHSHKPFNGYRGKTLFFNPGSPTDKIFSQINSYGIITINDKIEAKIV
                     NL"
BASE COUNT          806 a          808 c          939 g         1103 t
ORIGIN      
        1 cgtcattgcg agcgaagcga agcaatctct tgcgacggga ttgcttcggc acttcgtgcc
       61 tcgcaatgac actttaaaaa tcgaatctcg aaatagtgtt tccgtcagag acaatgtcat
      121 aatttagaca tgtctgattc tctatcggaa taatttctcc gaagcaaaag cgcggtttct
      181 attgcttttg cgaaggagaa taaccggttg attagtcaat cggttattat ataatagata
      241 tcaattgttc tgcaagtatt tttttaggtt tagttttttg attgccttaa aaaaggcctc
      301 tatgcaatga gggtcaaatt ggctgccgga tttatgccgg atttctttta aggcctggga
      361 gatgcggacc ctctcccggt aaggcctgcc gtatatcatt gcctcaaagg catcggctac
      421 cgccataatc cgcgccccca gaggtatctt cctccctttc agccgtgaag gatatccggt
      481 gccgttaaat ttctcgtggt gatgcagtat gatggggata gccggacgga ttgcctcaag
      541 atgccttaat atttttgccc cttttaccgg atggccctga ataatgctga attccttctc
      601 ggtcaggccg gaggatttag tcaatatttc tattgggatg tctactttgc cggcatcgtg
      661 caggaggctg gcgaatttca ggctctggat gtccttttca tctaagcgca tttccctgcc
      721 gatggcgcag actaagcggc tgaaatacgg gctgtgggtg taggcgcagg ggacccgggt
      781 gtcaaataag gtaaccaggg atttgatgct tcccaggatg atcttttgct gttcttcgta
      841 aagctggagg ttgcggatgc cgattaccgc ctgttctccc agggtcatca ggatctcctg
      901 gtcataggag tcaaagggta agtcattcgc gcggcgttta aggataatca ttccgatcag
      961 gtcgtcggct atcaggggaa tagccagggt agagttattc cgtatcaccg aagacttatg
     1021 gatgatatgc cgctcaatgg agctgtaagc gcgtaggcct ttggtcttgt caattacgca
     1081 tttggcattt ggccgggtcg cgcagcgcag ggtaattttc ttgttgccgg gatcaaggat
     1141 aactatggag caggtttggg cgcctaaggt ttgagaggtg agcttggcca agcgcaggat
     1201 aaggttctta aggtcgtagg tggagttgat caggcggtaa acagtatgta tagttgacag
     1261 caccgcccta tactttttcg tagggatcga atagtttctt atactcatct aaagcgtacc
     1321 tgtcggtcat tccagcgata tagtcgcaaa ttactcttct ggtgtcttct ccggattgga
     1381 tgcgtcctcc ggtttcttcc gggagctgct gggggctgtt gagatataac ttaaaaagct
     1441 cggtgatgaa acgtttggcc ttgtcagaca tccgcaccac ccggtaattg cggtaaagct
     1501 cccgcatcag gaaatctttc agcggcagcc gcagggcctc catatccggg ctaaaggaaa
     1561 ccagcttgta atcaaggtta agggcgtctt cggcggattg gactttggct ttttttatct
     1621 tcttttgggt ttcttttatt aaatccgtta cctgcgcgtc aatcagcaga cggataatct
     1681 ggtatttctt taattgaggt tttatcgcgc cgtaacggct gtaaacttta gttgagagca
     1741 tattccaaag ccggtttttc cttaacttgg tttcctcaat cagcccggaa gtcaggccgt
     1801 catccaagtc atgattatta taagctattt catcggcaat gtccactact tgtgtttcta
     1861 tggtgggcat cttctccgga tgaaattctt ctaaccgccc cattttgtca tagaaggtgg
     1921 agtgtttgat tatgccttca cggacttccc agctcaagtt aagccccggg aattccggat
     1981 agcgttcctc aagtttgtcc actatcctta aaccctggag gttatggtta aagcccccga
     2041 aatccgacat caactcatcc agggcctctt ctccggaatg gccgaagggc gtatgcccta
     2101 agtcatgggc cagggccaca gcttctacca ggtcgcagtt caggcctaac cttgaggcga
     2161 tagtcctggc tatctgggac acctctaagg tgtgggtaag ccgggtgcgg tagtaatcgc
     2221 cctcgtgatt tacaaagacc tgggttttat attccagcct gcgaaaggcc gccgagtgga
     2281 ttatcctgtc ccggtccctc tgatagcagc cgcggtagag gtgctctttt tctttatgcg
     2341 cccttcctct ggaggaaaag cttttagcgg cgtagggcga gagattttta tcttcccagt
     2401 tttttagata atttgtcata gagttcatcc agggattggg agattatttt ggtatcaaat
     2461 actaccggca taaagttggt gtcttctttc cagcggggaa cgatatggat gtgcaggtgg
     2521 ccggggattc cggccccggc agaacgtccg gcatttatcc caatgttaaa tccagcgggg
     2581 ttcagcgttt tttttaggat gtcctgtata ttgttcaggg tggaaaacat gtccaggatt
     2641 tcttcttggg tcaatgattt caggtctttg atgtgccggt aaggcgcggc catcaggtgg
     2701 ccgttattgt aagggaattt attaagcatg acaaatacat gccgggagcg caggataatc
     2761 agatttttcc ggtcaaggga tgattttgaa gtcctgcaga aaaggcagcc tttttgtttc
     2821 ttggcgttag atatgtaatt tatcctccag ggggcccaga gcttgtccat ttttataggt
     2881 ttactatttt ggcctcaatc ttgtcgttaa tggtgattat tccgtaagag tttatctggc
     2941 tgaatatctt gtcggtcgga ctgccggggt taaagaataa tgtcttgcct ctatatccgt
     3001 taaagggttt gtgggaatgg ccgaatatga tcagatcggg cttttctttt tgaaattctt
     3061 tttcgcacca atccatcagc ccgaacgggc tccccccgcc gtggactacc ccgatataaa
     3121 agtttccggc tttgaataag agtttattgg ggaggctgtc tttcaggact ccttcgtcca
     3181 tattcccgga gacagctttt atgccgggtt ttattttttc cattttttta aagaaggccg
     3241 ctgaagtgat gtctccggcg tggattagca ggtcggcgcc ctttatctgg gcatagacct
     3301 cttccggcag gtccttggcc ctcccgggta tatgggtgtc ggatagaacg atgattctca
     3361 cctgaaaatc tccatagcta tatttattac aacaagttat gacaacatgt cattcccgcg
     3421 aaagcgggaa tccagataat ctggattgtc cggtcaagcc ggacaatgac aaaggatttt
     3481 cattctcgtt ggtgtcccgc ttttagcggg gcatgaaagt ttcattattt tattatcctg
     3541 ggctgggagt agatgtctaa taaggtgttt actgcctggg cgtcccaggt gcttaccttt
     3601 tcttccttgg cgatgagctt ggcgttgtca tctatcttgt caaaagcgat gaacac
//
LOCUS       DATDUB010000043         4330 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1029930, whole genome shotgun sequence.
ACCESSION   DATDUB010000043 DATDUB010000000
VERSION     DATDUB010000043.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 4330)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4330)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4330
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1029930"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            123..2084
                     /gene="acs"
                     /locus_tag="VJA84_00850"
     CDS             123..2084
                     /gene="acs"
                     /locus_tag="VJA84_00850"
                     /EC_number="6.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018195535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003987 - acetate-CoA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0019427 - acetyl-CoA biosynthetic process
                     from acetate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase"
                     /protein_id="HLD40707.1"
                     /translation="MTLKSKNIETILAEKRIFKPSKKFQRRARISSMKEYLSMYEKSI
                     KDPEKFWGLIASELTWFKKWSKVLDETEAPFYKWFVNGKTNITLNCLDRHLDTATRNK
                     AAIIWEGEPKDRRTLTYSQLLQEVCLFANALKNLGIQRGDRVAIYLPMIPELAISVLA
                     CARIGAVHTVIFAGFSAEAIRDRVLDSESKLVITADGGWRKGNVLPLKQTVDEALREC
                     PCVRHVVVVKRGQGESFPCRIKEGRDHWYHRIIDDVSAKCPAEPVDSEDMLFLLYTSG
                     TTGKPKGIIHTAGGYMVYAYLTSKYVFDLRPEDVYWCTADIGWITGHSYLVYGPLING
                     ATVFMYEGAPNWPDWGRFWRMIQDNSISIFYTAPTAIRAFMKWGEEWPNKYDLSSLRL
                     LGTVGETINPEVWMWYHRVIGAERCPIVDTWWQTETGGIMITPLPGCVPAKPGSATVP
                     FFGVDAAVLSEEGKEVEVGILSIRKPWPGMLRGIYGDKERYKQTYWSKWPGKYFPGDG
                     ARKDSDGYFWILGRIDDVVNVAGHRIGTAELESIFVEHPGVAESAVIGIDHEIKGKCL
                     VGFITLKEGVIATETLEKELKEWAGKKIGRFAVPDKIIFSADLPKTRSGKIMRRLLRD
                     IATGRALGNVTTLAEANVIEQLREKYEED"
     gene            2091..2807
                     /locus_tag="VJA84_00855"
     CDS             2091..2807
                     /locus_tag="VJA84_00855"
                     /inference="COORDINATES: protein motif:HMM:NF014704.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CvpA family protein"
                     /protein_id="HLD40708.1"
                     /translation="MNELDIMLIVAVAVSSLMGYFKGFVKEAMGALAVIISAAVTYAY
                     FKRGGSLLFLSLIFILTNLGLAVVFWWLRKSVWRNDPGLSLPKRLGGVAVGFVKGMVS
                     VLIALASLALFAGIIKVTRPDINEYVETSLLYARYRGIRPVTAGSLKDKPAPALGFAE
                     RRAGLPKEMVKEFIKIDSVKAILEDKRLIEDLNQEDYAKVMGNPKLLKLLNDPEFLKQ
                     VVALGLRQGRRPVRGNEGEK"
     gene            2869..4143
                     /locus_tag="VJA84_00860"
     CDS             2869..4143
                     /locus_tag="VJA84_00860"
                     /inference="COORDINATES: protein motif:HMM:NF024571.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HLD40709.1"
                     /translation="MIKERKVFKKLLAEAGNDKVSVVLGPRQTGKTTALKFIHETLTG
                     RDKAGGIFLDLDIYSNFEKVSTYENALAAFRLAGYNPQGLKKFYVFLDEFQRYQDLSV
                     IIKNIYDHHKNIKLYVTGSSSLAIKHKIQESLAGRKIITHLYPLNFEEFLRFKGREEL
                     VQQVKNVPLLEGGNLFASTKELYKELEEFIIFGGYPEAALSDKKPAKIEVLKSIFDLY
                     VKKELVEYLKLDKIMEAKKLIQYLAVNNAQKIKYQNIAQIAGLSQKTVKSYIELLKET
                     FLIAEVKPFFTNKNKELVKIPKIYFIDSGVANFFINNFNGFELRNDSPFLFENYVLSE
                     LIKAGIKPDTIKFWQDKNQTEVDFLLEAGKRLTAIEVKFKQLLSGGDLSAFKIFERDY
                     PGARGFLVNLSCQKVFKKVKALLPYKAAQAIL"
BASE COUNT         1189 a          818 c         1171 g         1152 t
ORIGIN      
        1 cggaaatagg gtcaaaaagg cagtgtttaa agttccatta taaaaataag aattcaatcg
       61 gtctcgcagg ctctccaagg gcgaaggcct gtttctggaa tctggagtgg ggaggcgaag
      121 aaatgacgct caagtcaaaa aacattgaga caatattagc cgagaaaaga atttttaagc
      181 cgtctaagaa atttcagcgg cgcgcgcgta tctcgtctat gaaggaatac ttgagtatgt
      241 atgaaaaaag catcaaagat cctgaaaaat tctggggact catcgccagt gagcttacct
      301 ggtttaagaa atggagtaaa gtgcttgatg agacagaggc ccctttttat aaatggtttg
      361 taaacgggaa aacaaatatt acgcttaact gtcttgaccg tcatttggat acggcaacac
      421 gcaacaaggc ggccattata tgggagggtg agcctaaaga ccgccgcaca ttgacctata
      481 gccagttgtt gcaagaagtc tgcctctttg ctaatgcctt gaagaatctc gggatccagc
      541 gcggtgaccg tgtagccatt tacctgccca tgattccgga actggctatc agcgtgcttg
      601 cctgcgcgcg catcggggcg gtgcatacgg tcatttttgc cggtttttct gccgaggcta
      661 tccgtgaccg cgtattagac tccgagtcaa aacttgtcat tacggccgac ggaggatggc
      721 gaaagggaaa tgtcctgcca ttaaaacaaa ctgtggatga agccctgcgt gagtgccctt
      781 gcgtcaggca tgtggtggtg gtcaaacggg gacagggcga gtcgtttccc tgccgcatca
      841 aagaaggccg ggaccactgg tatcatcgta tcatagatga tgtctcggca aagtgtccgg
      901 cagagccggt agacagtgaa gatatgttat ttcttttata taccagcggg acaacgggaa
      961 agccaaaagg gattattcat accgctggcg gatatatggt gtatgcctat ctgaccagta
     1021 aatatgtatt tgacttaaga ccggaagatg tttattggtg cactgccgat attggctgga
     1081 ttaccgggca cagttatttg gtctacggac cgttgattaa cggggctact gtatttatgt
     1141 atgaaggggc tcctaattgg ccggactggg ggcgtttttg gaggatgata caggataatt
     1201 ccataagcat attttatacc gcgccgaccg ctatccgggc gtttatgaaa tggggagaag
     1261 agtggcctaa taaatatgat ctttcttctt tgcgtttatt ggggacggtg ggagaaacta
     1321 ttaatccgga ggtctggatg tggtaccatc gggttatcgg ggcggaaaga tgccctattg
     1381 tggatacctg gtggcagacc gagaccggcg gcatcatgat tacgccgtta cccgggtgtg
     1441 tcccggccaa gcccggcagc gccacggtgc cgttttttgg ggtggacgcg gccgtgttat
     1501 ccgaagaggg caaggaagtt gaagttggga tactttctat tcgtaagccc tggccgggga
     1561 tgctgcgcgg tatttacggg gataaggaaa gatataaaca aacctattgg tccaagtggc
     1621 ccgggaaata ctttcccggg gacggggcaa gaaaggatag cgacggatat ttctggattt
     1681 taggcaggat tgatgatgtg gtcaatgttg ccggccaccg tatcgggacg gctgaacttg
     1741 agagcatatt cgtggaacac cccggtgtcg cggaatcggc ggtgattgga atagatcatg
     1801 aaattaaagg taaatgcctg gtcgggttta tcaccctcaa agaaggggta atagccaccg
     1861 aaaccctgga aaaagagttg aaggaatggg cgggaaagaa aatcggcagg tttgctgtcc
     1921 ccgataagat tattttctcc gcggatttac ctaaaacccg ctccgggaaa attatgcgcc
     1981 ggctcttaag ggacatcgcg acaggacgcg cgttaggcaa tgttactacc ttggcggagg
     2041 ctaatgttat tgaacagcta agagaaaaat atgaggagga ttaggtgtct atgaatgaac
     2101 ttgacataat gctgatcgtc gcggtggcgg tgagctctct gatgggttat tttaaaggat
     2161 ttgttaaaga ggccatgggt gccttggcgg tgattatcag cgcggcagta acctatgctt
     2221 attttaaaag aggcgggagc ctgctttttt tgtctttgat ctttatcctt accaatttag
     2281 gcttggccgt ggttttctgg tggcttagga aatctgtctg gcggaatgat cctggacttt
     2341 ctttgccaaa gcggctggga ggagtggctg tcggctttgt aaagggtatg gtatccgtgt
     2401 taattgcgct ggcttctttg gccttattcg cgggcataat taaggtaacc cggccggata
     2461 ttaatgaata tgtggagact tccctgttat acgcgcgata ccggggaata aggcctgtta
     2521 ccgctggatc gcttaaagat aaacctgccc cggccctcgg cttcgccgag aggcgagcag
     2581 gcctgcctaa ggaaatggtc aaagaattca ttaagattga ttcggtaaag gcaatattag
     2641 aggataagcg gttaattgaa gaccttaatc aggaagatta cgccaaggtt atgggtaatc
     2701 ctaaattgct taaactctta aatgacccgg aattcttaaa gcaggtggtc gcgttgggat
     2761 tgcgccaggg ccgccggcct gtccggggaa atgagggcga aaagtagaaa gcggtcttta
     2821 atatattctt gacattacat ccagaataga gtattctatt atgcagatat gattaaagag
     2881 agaaaggtgt tcaaaaagct gttggctgaa gcgggtaatg ataaggtctc ggttgtactg
     2941 gggccgcgtc agaccgggaa aaccaccgcc cttaaattta tacatgaaac actgacaggc
     3001 cgcgataagg ctggcggaat atttcttgat ttggacatat attccaattt tgagaaagtt
     3061 tcaacctatg aaaacgcgtt ggcggctttc aggttagccg ggtataatcc tcaaggctta
     3121 aagaaatttt atgtctttct tgatgagttt caaagatatc aagacctctc cgtaatcata
     3181 aagaatattt atgaccacca taagaatata aaattatacg ttaccggctc atcatcttta
     3241 gccataaaac acaaaataca ggagagcctg gccggcagga agataattac ccatttatat
     3301 ccgctgaact ttgaagaatt cctgcgtttt aagggaagag aggaattggt tcaacaggta
     3361 aaaaatgttc ctttattaga gggggggaat ttattcgcct ccaccaagga gctttataaa
     3421 gaacttgagg agtttataat cttcgggggt tacccggagg ccgccttatc ggataaaaag
     3481 ccggctaaaa tagaggtgct aaaaagtatt tttgatttat atgtaaagaa agaattggtt
     3541 gaatatctta agcttgataa aattatggaa gcaaaaaagc tgattcagta tttggcggtc
     3601 aataatgccc aaaagatcaa atatcagaat atcgcccaga tcgccggtct gtcccaaaag
     3661 actgtaaaga gttatataga gctgcttaaa gaaacattcc tgatagccga ggtaaaaccg
     3721 ttcttcacga ataaaaataa ggagttagta aagattccga agatttattt tatagactcc
     3781 ggagtagcca atttttttat taataatttt aacggctttg aattaaggaa tgattctcca
     3841 tttttgtttg aaaattatgt cctttcggaa ttgataaagg caggcataaa gccggatacg
     3901 attaaattct ggcaggataa aaatcagact gaagtagact ttctgcttga ggcaggcaag
     3961 aggttgacgg cgatagaggt gaaatttaaa cagttattgt ccggcggcga tttatccgcg
     4021 ttcaaaatct ttgaaaggga ttatcctggc gctaggggct ttttggttaa cttatcttgt
     4081 cagaaagtct tcaaaaaggt gaaggcttta ctgccttata aagccgcgca ggcgatttta
     4141 tagctagcgc tttgtagcag tcttattttc tcaagaactg gcgcattatg gaatcgtcgc
     4201 tgatttcaat tgccgtgggc cggccgtggg ggcaggtgaa aggggtttgg caggccagaa
     4261 gcttttcgcg ctggtattcg gcggcttgag gggttatgtt ttggccaaag gttaccgagg
     4321 atttgcaggc
//
LOCUS       DATDUB010000044         2238 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1865110, whole genome shotgun sequence.
ACCESSION   DATDUB010000044 DATDUB010000000
VERSION     DATDUB010000044.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2238)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2238)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2238
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1865110"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..337
                     /locus_tag="VJA84_00865"
     CDS             <1..337
                     /locus_tag="VJA84_00865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40710.1"
                     /translation="YNLKMFLDSSLKEGTLNQSPLELLASPLKANIQEAVKFSSQQPV
                     LQTGCLAPELTYLWSGDLGDANPVPVEPEFISSYQSSGVKAVNLVVLTPAGVVGSAFE
                     MVEVDDAQG"
     gene            321..>2238
                     /locus_tag="VJA84_00870"
     CDS             321..>2238
                     /locus_tag="VJA84_00870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HLD40711.1"
                     /translation="MMLKANRKRYLKVIIFGFFLSFSGPAFAREGVSDYLCDIGEGYY
                     LKGQYDDALHEFNKALMVDPQSPKAKSYIRKIDLRLKSLMPREIDPAIKETVKPAIKK
                     VVPEKLESRKEIPPRPEGGGLSSYGQSHKKKIIPLDQIREPSIESAPVLSKVQAVDMA
                     LAKFEKELDVKEEEALPQGWAVKDGGIKDEGSGQEDAALGKTGALKISGEVRLSLGLT
                     SEDVIWKDANSDKIGVPREKNWRYLWGDLRHNTYDPEIYDRLNLVLESQFDGPLNILL
                     DFTLDPWTFIGKNHVAVNSAAGGDRVEMDLKYWSGDSRTLNETYRSKKGNIINLKQVK
                     VDNGDTTLTTPTGIFDWGTTYNAIQPMEINRDYRPVRKLWFDYKQDDYSWKIFPISDD
                     FEALTSDDPLRISNNHVYWEESPWLDEYEPSVIFEPDSGTFPLKKGRWIRRLSFITKD
                     SSDDYPHRLTFLRGASFKTLDQSYSLEAVAATPMSLWDEYYRSNSAIGAARLKVPLQD
                     TLDLGLTTTTKVGLNGGSAEALNQVEALDLSYQVAPLSSISLEAAESHTEIQEAKGFD
                     TVSDGVAAKLGLDYDAGEEKTDGLYASQLYFAHMDANFNPGLSNYRYTRNDDFTFSRH
                     IFFSEINEIDKPLIW"
BASE COUNT          579 a          473 c          598 g          588 t
ORIGIN      
        1 atataattta aagatgtttt tggattcttc gttaaaagag gggacattaa atcagtctcc
       61 attagagctt ttggccagcc ctcttaaggc caatattcag gaagcggtaa aattcagttc
      121 ccaacagcct gtcttgcaga ccggctgcct tgccccggag ctgacctatt tgtggagcgg
      181 ggacttgggc gatgctaacc ctgttccggt ggagccggaa tttatttcca gctatcaatc
      241 ttcaggggta aaggcggtaa acctggtggt tttgactccg gcgggggttg tgggaagcgc
      301 gtttgaaatg gtggaggtgg atgatgctca aggctaaccg gaagagatat ctgaaggtaa
      361 tcatcttcgg tttttttctt tctttttccg ggccggcctt tgcccgggag ggcgtcagcg
      421 attatctctg cgatatcggc gaaggttatt atttgaaagg ccaatatgat gatgccctgc
      481 atgagtttaa caaggccttg atggttgacc cgcagagccc gaaggcaaaa agctatatcc
      541 gcaagataga cttgaggtta aaatccctga tgcctcggga gattgatccg gcgattaaag
      601 aaactgttaa gcccgccatt aagaaagtag tccctgaaaa actggaatcc aggaaagaaa
      661 ttcctcccag gccggagggc ggtggtttgt cctcctatgg ccaaagccac aagaaaaaga
      721 ttattccctt agatcagatc cgtgaacctt caatagaatc cgctccggtt ttgtctaagg
      781 tccaggctgt ggatatggcc ctggccaagt ttgaaaaaga acttgacgtt aaagaagaag
      841 aggctcttcc tcaaggctgg gctgttaagg atgggggtat taaagatgaa gggtctgggc
      901 aggaagatgc cgccttagga aaaaccggag cgcttaagat atccggagag gtgcgcttaa
      961 gcctgggatt aacctccgag gatgttatat ggaaagacgc taattcggat aaaattggcg
     1021 tgcccagaga aaagaattgg cgttatctct ggggcgattt gcgccataat acctatgacc
     1081 ctgaaatcta tgaccgcttg aatttagttc tggaaagtca gtttgacggc cctttaaata
     1141 ttctgctgga ttttaccctt gatccctgga catttatcgg taaaaatcat gtggctgtga
     1201 attccgccgc cggcggggat agggtagaga tggatttaaa atactggtcg ggcgacagcc
     1261 gcacccttaa tgagacttac cgttctaaga agggaaatat catcaatctt aagcaggtaa
     1321 aagtggataa cggcgatacg accctgacta cccctacggg aatttttgac tggggaacta
     1381 cctataatgc tatccagcct atggagatta accgcgatta ccgcccggta agaaagttat
     1441 ggtttgacta taaacaggat gattatagct ggaaaatttt tcccatttcc gatgattttg
     1501 aggccctgac cagcgatgac cctctaagga tatccaataa tcatgtttat tgggaagaaa
     1561 gcccctggtt agatgaatat gagcccagcg ttatctttga gccggatagc gggacttttc
     1621 ctttgaagaa agggcgctgg ataagaagac tgtcctttat taccaaggat agcagcgatg
     1681 actatccgca tcggcttact tttttgcggg gggcgtcttt taagaccttg gaccagagtt
     1741 attctttaga ggcggtcgcg gccacgccga tgagtttatg ggatgagtat taccgctcta
     1801 acagcgctat cggggcggca cggcttaagg tcccgcttca ggataccctg gatttggggt
     1861 tgaccactac tactaaggta ggtttgaatg gcggcagcgc cgaggccctg aatcaggttg
     1921 aagccctgga tttgagttat caggttgccc cgcttagttc tatatctctg gaggcggcgg
     1981 agagccatac cgagattcag gaggccaaag gatttgacac tgtttctgac ggggtggcgg
     2041 cgaaattggg ccttgattat gatgccggcg aagaaaaaac cgacgggctt tacgccagcc
     2101 agctttattt tgcccatatg gatgctaatt ttaatcccgg cctgtcgaat taccgctata
     2161 cccgaaacga tgattttacc tttagccggc atatcttttt ttcggaaata aatgaaatag
     2221 acaaaccctt gatctggg
//
LOCUS       DATDUB010000045         4663 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1535527, whole genome shotgun sequence.
ACCESSION   DATDUB010000045 DATDUB010000000
VERSION     DATDUB010000045.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 4663)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4663)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4663
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1535527"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1117
                     /locus_tag="VJA84_00875"
     CDS             <1..1117
                     /locus_tag="VJA84_00875"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: protein motif:HMM:NF024754.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-dependent helicase"
                     /protein_id="HLD40712.1"
                     /translation="KVFADAKVITLEENYRSSQPILNLTNEIIRQAREKFEKKLFSRR
                     QGQGHPLYVETADEHEQSEFVAERILELREEGVSLREMAVLFRSGWHSNDLEIELSKR
                     NIPFRKYGGQRFVEASHIKDILSYLKVAYNASDQVSWHRLLLLLPKIGPKTAEKILEE
                     VIILKRGLSVDLQGLVFQKNPQLAGLFQFLTKALSAGLGVGEMFHLFLGHYQPLLKEK
                     YDDFHKRGNDLDSLYRIAIRYKSLEQFLTDMALEPPEKSLAQRGPEDKEEDFVTLSTI
                     HSAKGLEWKSVFIIHLAEGHLPSYLSLEDEDQIEEERRLFYVASTRAKDNLFLIKPRL
                     NTSIGRYFDEGRSYFNQTSRFLDEGRILDKFVSTEVI"
     gene            complement(1286..2134)
                     /locus_tag="VJA84_00880"
     CDS             complement(1286..2134)
                     /locus_tag="VJA84_00880"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: protein motif:HMM:NF002187.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051745 - 4-hydroxy-3-methylbut-2-en-1-yl
                     diphosphate reductase activity [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA];
                     GO_process: GO:0050992 - dimethylallyl diphosphate
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HLD40713.1"
                     /translation="MKITIAKNAGFCFGVKRAIDIALESAKQEKPVYMLGDIVHNENV
                     VKTIEDAGIKKTKTIPKENKSNLLIRAHGSAQKTLDTARKSRLNVIDATCPMVKEIHK
                     IVIDMDKKGYKILVIGDHKHDEVQGIIGQIKHKAVVLENAEDIKAKITRKLPKAAVVV
                     QSTQNLEKALKMQNILKDRVEDLKFFNTICAPTRMKQEEIKSLAQANDRVIVIGSKTS
                     ANTKRLYEIAKSINPRSYWVNSTADIQSEWLKKAKSIGITAGASTPDETIEEIKDYIQ
                     ENRLRR"
     gene            2359..3843
                     /locus_tag="VJA84_00885"
     CDS             2359..3843
                     /locus_tag="VJA84_00885"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HLD40714.1"
                     /translation="MDNWNRLSALPFKELREIQNQKLRHFISRQLYPFSPYYRRLFDR
                     HNIKPGYIKTVEDLRIIPFTKKEDFFSSPENPQAFRDFILQPDEKLIKKYWPKPKLIS
                     LALTKIIRGKDYLKKSLERQYKPIFLTATTGTTQSPVSFLYSDYDLGNLSRSGYRLLE
                     VFGGKGDIRAVNIFPYAPHLAFWQTFYAAVHHNDFMLSTGGGKVMGTQGNIEAICKVK
                     PNFLIGVPGYLYHLARVAREQGKDFSFLEKIVLGASAVPPGFKEKLAEILSGMGVKRL
                     SVMGTYGFTEAKCAWGECPTEIGLSSGYHTYPDMEIFEVIDPESGEARKEGEDGELVY
                     TSLDARGSAVVRYRTGDLVKGGISYQPCPYCQRTVPRINSQIYRASNIKDLKLSKLKG
                     TLVNLSYFGEILEAEKGVEEWQIEVRKKDNDPYEIDELVVYLSLKPEVEPQALKVSLR
                     EKMLSTTEVSPNEIIVLPHKEMLEQVEMEVSHKVKRFVDKRPKI"
     gene            3892..4179
                     /locus_tag="VJA84_00890"
     CDS             3892..4179
                     /locus_tag="VJA84_00890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40715.1"
                     /translation="MSIAVDLLKSEHIGIRDLKEHMSSVLKRRKTFIVTDRGVPINVI
                     LPYSDIVELADIMEELSEPKTLETVREGRLAVKSGSKGVPVSRLFGKRKAD"
     gene            4183..4485
                     /locus_tag="VJA84_00895"
     CDS             4183..4485
                     /locus_tag="VJA84_00895"
                     /inference="COORDINATES: protein motif:HMM:NF016876.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HLD40716.1"
                     /translation="MKYEVRFPSVSIEERFDKALSKISQKETRLRIMEAVESLADQPR
                     PGGKKFKAIRPPVYLYEFTAGYRLRAGDYRVLYDIDDAKKIVWILVLRKRDEYTYR"
     gene            4495..>4663
                     /locus_tag="VJA84_00900"
     CDS             4495..>4663
                     /locus_tag="VJA84_00900"
                     /inference="COORDINATES: protein motif:HMM:NF012336.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acyltransferase"
                     /protein_id="HLD40717.1"
                     /translation="MSRIAIVEGIRTPFARAWTDFGDIPAQELGRIAVRELLERTAID
                     PNLIDEVIFGSV"
BASE COUNT         1144 a         1081 c         1236 g         1202 t
ORIGIN      
        1 caaagtcttc gcggatgcca aggtgattac tttagaggaa aattaccgct ccagccagcc
       61 tatcctgaac ctgaccaatg agataatccg tcaggccagg gaaaaatttg agaagaagct
      121 ttttagccgc cggcagggcc agggccatcc cctgtatgtg gagaccgctg atgaacacga
      181 acaatccgag tttgtggcgg agaggatcct ggagcttagg gaagaagggg tatctttgcg
      241 ggagatggcc gtgctttttc gctccggatg gcattccaat gacctggaga tagaactctc
      301 taagcgcaat atcccttttc gcaaatacgg ggggcagagg tttgtggagg cctcgcatat
      361 caaggacatc ctgtcttatc tgaaggtggc ctataacgcc tcggaccagg tcagctggca
      421 caggctttta ctgcttctgc ctaagatcgg tccgaaaacc gcggagaaga tacttgaaga
      481 ggtgataatc ctgaaacggg ggttgtcagt ggatctgcaa ggcttggtat ttcagaagaa
      541 cccgcagttg gccgggcttt tccagttctt gaccaaggcc ttatccgccg gcttgggcgt
      601 gggggagatg ttccatctgt tcctggggca ctatcaacct ttattgaaag agaaatacga
      661 cgacttccat aagcgcggca atgacctgga ttctttgtat aggattgcca ttcgttataa
      721 atccctggaa cagtttttaa cggatatggc cctggagccg cccgaaaaga gcctcgccca
      781 gcgcggcccg gaggataaag aggaggattt tgtcactctc tcaaccatac actccgccaa
      841 aggcctggag tggaagagcg tgtttatcat tcaccttgcc gaaggccacc tgccgtcgta
      901 tctttctctg gaggacgagg accagataga ggaggagcgc aggctctttt atgtggccag
      961 cacccgggcc aaggacaacc tcttcctaat caaacccaga ttaaacacct ccattggccg
     1021 ctattttgac gaaggccgct cctactttaa ccaaacctcc cgtttcttgg acgaaggcag
     1081 aatcttagac aaattcgtct ccacagaagt aatctgaccc cttttttgta accggtcagt
     1141 aaacggggga attcccgcgc ggtcattgcg aggagccgaa ggcgacgaag caatctccgt
     1201 cgggattgct tcgctcactc cgttcgctcg caatgacaag gcgacaattg cccccgttga
     1261 ctgacgcatt accctttttt taaggtcatc gccgaaggcg attttcttgg atgtagtcct
     1321 tgatttcctc tatggtctca tccggggtgg aggccccggc ggtgatccct atggatttgg
     1381 cttttttcaa ccattcgctt tggatgtcag ccgtggaatt tacccagtaa gagcggggat
     1441 tgatggattt ggctatttca tagagccttt tggtattggc gctggtcttt gagccgatga
     1501 cgatcacgcg gtcgtttgct tgggccaggg attttatttc ttcttgtttc atccgggtgg
     1561 gggcgcagat agtgttaaag aacttcaaat cctccacgcg gtctttcaat atgttttgca
     1621 tcttgagcgc cttttccagg ttctgggtgg actggaccac taccgcggcc ttgggcagtt
     1681 tccgggttat ttttgccttt atgtcttcgg cattttctaa gactaccgcc ttgtgtttta
     1741 tctggccgat aatcccctgg acctcgtcgt gtttatggtc gccgatgacc aggattttgt
     1801 aacccttctt atccatatca ataacaatct tatggatttc cttgaccatc gggcaggtgg
     1861 cgtcaatcac attgaggcgg ctttttctgg ccgtatccag cgtcttttga gcgcttccgt
     1921 gggcccggat aaggagatta gatttatttt ctttgggtat ggttttggtt ttctttatcc
     1981 cggcatcttc aatagtcttg accacattct cattgtggac aatgtccccc agcatataga
     2041 ccggtttttc ctgtttcgcg ctttccaggg cgatgtctat ggcccttttg accccgaaac
     2101 aaaaccccgc gttcttggcg attgtaattt tcacctgaaa atctccatat caattcatta
     2161 atcacgggct gtggcaggtg ttccgcgcgc agttccgcag gcgccattcc acaatgtaat
     2221 tatccagaaa agcgccgagg atgtttgagc acggaatacc tgacgcagtc cgttgcgtgt
     2281 aatctagacg aatataatat aagataacac ttaattattc tattggcaat agctaaaagt
     2341 gtgttataat tttagacgat ggacaattgg aatagattaa gcgcgctccc ctttaaggag
     2401 ctaagagaaa tccagaacca aaagctccgt cattttatct cccgccagct ttatcccttc
     2461 agcccttatt accgcaggtt gtttgaccgg cataacatca agcccggata catcaaaacc
     2521 gtggaagatt taaggataat cccttttact aaaaaagagg atttcttctc cagcccggaa
     2581 aaccctcaag ccttccggga ttttatcctc cagccggatg aaaaactgat taagaaatac
     2641 tggccaaagc ctaagctgat ttctttggct ttgactaaga ttataagagg caaggattat
     2701 ctaaagaaaa gcctggagag gcaatacaag cctatcttcc tcaccgccac taccggcact
     2761 acccagtccc cggtatcttt tttatattcc gattatgacc ttgggaattt aagccgttcc
     2821 ggttaccgcc tgcttgaggt tttcgggggg aaaggggata tccgggcggt gaacattttt
     2881 ccttacgccc cgcacttagc cttctggcag accttttatg ccgcggtcca ccacaatgat
     2941 tttatgcttt ctaccggcgg cggcaaggta atgggcaccc agggcaacat tgaggcaatc
     3001 tgcaaggtga agccgaattt cctgatcggg gtgccgggat acctttatca tttggcgcgc
     3061 gtggccaggg agcagggcaa ggatttcagt tttttggaga agattgtctt gggcgcctcg
     3121 gcggtccccc ctggttttaa ggagaaattg gcggaaatcc tctccgggat gggggtaaaa
     3181 aggctttcgg taatggggac ctatggtttt accgaggcca aatgcgcctg gggcgagtgc
     3241 ccgaccgaga taggcctatc cagcggttac cacacctatc cggatatgga gatttttgag
     3301 gtgattgacc cggaaagcgg cgaggccagg aaagaaggcg aggacggaga gctggtctat
     3361 accagcctgg atgcccgggg aagcgctgtt gtgcgttacc gcaccggaga cctggtaaaa
     3421 ggcgggatta gctatcagcc ctgtccgtat tgccaaagaa cggtcccccg gataaacagc
     3481 cagatctacc gggcctctaa catcaaggat ttaaagcttt ctaagctaaa gggtaccctg
     3541 gttaatttaa gctacttcgg tgagattttg gaggcggaaa aaggggtgga ggagtggcag
     3601 atagaggtcc gcaaaaaaga taatgacccc tatgagatag acgagctggt ggtctatctt
     3661 agcctgaagc ccgaagttga gccgcaggcg cttaaggtga gtttaaggga aaagatgctt
     3721 tctaccaccg aggtcagccc gaatgagatc atcgtcctgc cccataaaga gatgctggaa
     3781 caggtggaga tggaggtctc ccataaggtc aagcgctttg tggacaagcg gccgaaaata
     3841 tgatatactt atgatgtgac tacaattgag tctacaagga ggaaataaac aatgagtatc
     3901 gcggtggatt tgttgaagtc ggagcatatc gggatcaggg atttaaaaga gcatatgtcc
     3961 agcgttttaa aaaggagaaa gacatttatc gtgactgaca ggggagtccc gataaatgtt
     4021 atcctgcctt attcggacat agtggaattg gcggatatta tggaggagct ttccgagcct
     4081 aagactttag aaactgtccg ggagggccgt ttggcggtta aatccgggtc taaaggcgtt
     4141 ccagtctccc gcctgtttgg aaagaggaaa gcggattagt gaatgaaata cgaagtcagg
     4201 tttccttctg tctcaataga ggaaagattt gacaaggccc tttctaagat ttctcaaaaa
     4261 gaaacgcgtc taaggataat ggaagcggtg gaaagtctgg cggaccagcc gcgcccgggg
     4321 ggcaagaaat tcaaggccat ccggccgccg gtttatctgt atgaattcac cgccggatac
     4381 cgcctgcgcg caggcgatta ccgggtcctt tacgatatag atgacgcgaa aaagattgtc
     4441 tggatattgg tcttaagaaa acgcgatgaa tatacttaca ggtagaggct aaatatgtca
     4501 aggatagcca tagttgaggg gatacgcaca ccttttgccc gggcctggac ggattttggt
     4561 gatatcccgg cccaggaatt aggccggata gcagtccgag agttgttgga aagaacagcc
     4621 atagatccga acttgattga tgaggtaatc ttcggttcag tgg
//
LOCUS       DATDUB010000046         4577 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_2036215, whole genome shotgun sequence.
ACCESSION   DATDUB010000046 DATDUB010000000
VERSION     DATDUB010000046.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 4577)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4577)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4577
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2036215"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(47..1990)
                     /gene="recQ"
                     /locus_tag="VJA84_00905"
     CDS             complement(47..1990)
                     /gene="recQ"
                     /locus_tag="VJA84_00905"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: protein motif:HMM:TIGR01389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase RecQ"
                     /protein_id="HLD40718.1"
                     /translation="MSSCLRIIISCTSTATGTEIKPISIPMYTWSIMAEKDTYISREM
                     LGCLKRYWGYEEFRPWQDETILSVLNGRDSLTVLPTGGGKSLCFQLPALLKEGTAVVI
                     SPLISLMKDQVDSLKDMGIPADYLNSSLTPDAQKSVIERIRQGKVKLLYISPERLQGD
                     WTLSLLKSIEVSFFVIDEAHCISHWGHDFREDYRNLGIIKEEFPGIATHAFTATATKE
                     VQGDILGQLCLDGPLINIASVDRANLTYRVEMRSEIIQQITGVLKKHPREAGIIYCLR
                     RDDVDHISTRLNALGFKNLPYHAGMSDQDRHKYQEQFIGEKVDIIVATVAFGMGIDRP
                     DIRFVIHAAMPKSIEHYHQETGRAGRDGLPAHCYMFYGGNDFRLWSFFLEKSPNNEVM
                     REKLKIIYNLCAHPQCRHKVFVNYFGQIYDKVSCGACDYCLGEVDTVNDSKEISRKIL
                     SCVDGVCYGDGRGFGAGYITNILKGNLTEQVSGWRHQRLEVFGAMAREPLVFIRYMVE
                     QLLGQGFLRREGEFSTLSLTETGRQALKGELTPVLAKPLIAQRKKEIAGKQKESKEKE
                     WASVDQGLFEALRRKRAELAQKTGVPAYIIFGDRSLKDMASKAPRTREAFSAVFGVGE
                     HKLKAYSGAFLSVIRAHQREIRG"
     gene            complement(1887..2570)
                     /locus_tag="VJA84_00910"
     CDS             complement(1887..2570)
                     /locus_tag="VJA84_00910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011358184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HLD40719.1"
                     /translation="MDNNYIFELKDAHFSYMGKYPALRGIDITVRQGEQIAVIGANGC
                     GKSTLLHILDGLIFADRGSFKAFGKELKEGAFNRADFSRDFRKKVGLVFQNPDVQLFC
                     PTVKEDIVFGPLQLGVEKGEIQRRLEGLVSILNIGDLLERPPQQLSIGEKRKVAIAST
                     HDLHILEEISDTVYVFSPEKRIVRSGCPHEVLADEQLLKDNNLLHIHSHRHRDKTHIH
                     SHVHLEHHG"
     gene            complement(2563..3393)
                     /gene="cbiQ"
                     /locus_tag="VJA84_00915"
     CDS             complement(2563..3393)
                     /gene="cbiQ"
                     /locus_tag="VJA84_00915"
                     /inference="COORDINATES: protein motif:HMM:NF014420.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0032778 - P-type cobalt transporter
                     activity [Evidence IEA];
                     GO_process: GO:0006824 - cobalt ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cobalt ECF transporter T component CbiQ"
                     /protein_id="HLD40720.1"
                     /translation="MSKRNNFIRRSLMGVLSFLKESVFADEYAAKKGFLQSLDPRIKV
                     ITFILFILAILFTQSISGALYLYAVCLILACLSRVSMGFFLQRTWIFIPLFSLFIAIP
                     ALFSVFTPGEPLLSLNMAGLQLIITRPGLSGATLFVTRVIASVSFAVLLSLTTKHFVL
                     LKVLRIIGIPQVFVMTMGMCYRYIYLFIEMIENTYTAIKSRSGVNIHYQRGQRVVAWN
                     IAYLWVRSCRLNEEVYQAMLSRGYSGEPAVLNDFEVRLKDWLWLSAVLALVFLVFYYG
                     "
     gene            complement(3377..3733)
                     /locus_tag="VJA84_00920"
     CDS             complement(3377..3733)
                     /locus_tag="VJA84_00920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011358182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDGLE domain-containing protein"
                     /protein_id="HLD40721.1"
                     /translation="MKTTAKFWLGVAVLIMLSPLGLILPKYFKAGPAWGEWGADEMRR
                     LVGYIPEGFGKLSNLWSAPIPDYAFKGWEEKGLPGLSFAYILSAIAGIGIIILVMMVI
                     GKLLAKKEEQLNVKKK"
     gene            complement(3736..4173)
                     /locus_tag="VJA84_00925"
     CDS             complement(3736..4173)
                     /locus_tag="VJA84_00925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013174563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0000041 - transition metal ion transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor ABC transporter permease"
                     /protein_id="HLD40722.1"
                     /translation="MHIPDGYLGPATCGVFYAVMLPIWTIASRIVQKTLKARQVPMLA
                     IGAAFSFVIMMFNLPVPGGSSGHATGGVLVAVLLGPWAACIAITVALVVQALYCPYGL
                     NVALPAMLGGHLLVFGWVEAIVTALVIKYLQKQAPELLEEGGR"
BASE COUNT         1225 a         1238 c         1035 g         1079 t
ORIGIN      
        1 tcaagccttt taccctgcgc gtaacgcgta ttctaagccg gataaactat ccccgaattt
       61 cccgctgatg ggccctgatg acggacagga aggccccgga gtaggccttc agtttatgct
      121 ctccgacgcc gaaaaccgcg gagaaagcct cgcgggtccg gggggctttt gaggccatat
      181 ctttgagtga ccggtcaccg aagattatat aggcggggac acctgtcttt tgagccaatt
      241 ccgcccgttt gcgccgcagg gcctcaaaca ggccctggtc aacactggcc cactcttttt
      301 cttttgactc tttctgcttt ccggcgatct ctttcttgcg ctgggcgata agcggcttgg
      361 ccaataccgg ggtcaactct cccttaagcg cctgcctgcc ggtttcggta agcgacaagg
      421 tggagaattc tccctcccgc ctcaagaaac cctggcccag taattgctca accatataac
      481 gaataaaaac aagcggctcc cgggccatcg ccccaaatac ctccaggcgc tgatggcgcc
      541 agccggagac ctgttcggtc aggtttccct ttagaatatt agtaatgtat ccggccccga
      601 agccgcggcc gtcgccataa cagaccccat ccacgcagga aaggatcttg cggcttatct
      661 ccttagaatc attaaccgta tccacctcac ccaagcaata atcacaggct ccgcaggaaa
      721 ccttatcgta tatttggccg aaataattca caaacacctt gtgccggcac tgcggatggg
      781 cgcagagatt atagataatt ttcagtttct cccgcatcac ctcattgtta ggcgatttct
      841 ctaagaaaaa actccataag cgaaagtcat tgcccccgta aaacatatag caatgcgccg
      901 gcaggccgtc gcgcccggcc cggccggtct cctgatgata atgctcaatg ctcttgggca
      961 ttgccgcgtg gatgacaaaa cggatatccg gacggtcaat ccccataccg aaggccaccg
     1021 tagccacgat gatatctacc ttttctccga taaactgttc ttgatattta tggcggtctt
     1081 gatccgacat cccggcgtga taaggaagat ttttaaaccc cagagcgttc agccgggtgg
     1141 agatatggtc aacatcatcc cggcgcaagc aatagataat cccggcctcc cgggggtgtt
     1201 ttttcaggac cccggttatc tgctgaataa tttccgaacg catctcaacc cgataagtca
     1261 aattggcccg gtcaaccgaa gcgatattaa tcaggggacc atccaagcac agctgcccta
     1321 agatatctcc ctggacctct ttagtcgcgg tggcagtaaa ggcgtgagtg gcaatacctg
     1381 gaaactcttc tttaataata cctaaattgc gataatcttc ccggaagtca tggccccaat
     1441 ggctgatgca gtgggcctca tctataacaa aaaaggatac ctctattgat tttagcaggc
     1501 ttaaggtcca atctccctgc aggcgctcgg gagagatata cagaagctta accttaccct
     1561 ggcgaatacg ttcgatgacg gacttctggg cgtcaggagt aaggcttgaa ttcaagtagt
     1621 ccgcgggaat acccatatct ttaaggctgt ccacctggtc tttcatcaag gagattaaag
     1681 gcgagataac cactgccgtc ccctctttaa gcagggcagg cagttgaaag cacaaggatt
     1741 tccctcctcc ggtgggcagg accgtcaggc tgtcgcggcc attaaggaca gacaatatag
     1801 tctcatcctg ccagggccgg aattcctcat acccccaata ccgctttaaa cagccaagca
     1861 tctccctgga aatataggtg tctttttcag ccatgatgct ccaggtgtac atgggaatgg
     1921 atatgggttt tatctctgtg ccggtggctg tggatgtgca ggagattatt atccttaagc
     1981 agctgctcat cggccagcac ctcatgggga cagccggatc tgactatcct cttctctggg
     2041 ctaaacacat acaccgtatc cgagatttcc tccaggatat gcaggtcgtg ggtagaggca
     2101 atggctacct ttcttttctc cccgatactt aactgctggg gaggccgctc caataaatcc
     2161 ccgatattca atatgctaac cagcccttcc aggcgcctct ggatttcccc cttttccacc
     2221 cccagctgta acggcccgaa gacaatatct tcttttaccg tcgggcaaaa gagctggaca
     2281 tcgggattct gaaaaaccag gcccaccttt tttctaaaat ccctggaaaa atcagcgcgg
     2341 ttaaaggcgc cttcctttaa ttctttccca aaggccttga aacttccccg gtccgcaaag
     2401 atcagtccgt caaggatatg taaaagggtg gacttcccgc atccattggc cccgatgacc
     2461 gctatctgct ctccctggcg gaccgtaata tcaatcccgc gcaaggccgg atattttccc
     2521 atataggaaa aatgcgcgtc ttttaactca aaaatataat tattatccat agtaaaacac
     2581 cagaaaaacc agcgccagca cagctgacaa ccacagccag tccttaagcc taacctcaaa
     2641 atcatttaat accgccggct ctccgctata gccgcgggat aacatagcct ggtatacctc
     2701 ttcattcaag cggcaggaac gcacccacag ataagcgata ttccaggcca ccacgcgctg
     2761 acctctctgg taatggatat tgactcccga gcggctttta atggcagtat aggtattttc
     2821 aatcatctca ataaaaagat aaatatagcg atagcacatc cccatagtca ttacaaagac
     2881 ctggggaatc ccgataatcc gtaagacctt gagcaatacg aaatgcttag tggtaaggct
     2941 aagaagaacg gcgaaagata ccgaggctat tacccgcgta acgaataatg ttgccccgga
     3001 taaccccggt cgggtaatga tcagctggag gccggccata ttcaggctca acaagggttc
     3061 cccgggggta aaaacgctaa aaagcgccgg gatggcgata aaaagggaaa atagcgggat
     3121 aaatatccag gtcctttgca aaaagaaacc catactgacg cgagaaagac aggccaggat
     3181 caaacatacg gcataaagat aaagagcgcc ggatatactc tgggtaaata gtatcgccag
     3241 gataaacagg ataaaggtaa tcaccttgat gcggggatct aaagactgca gaaagccttt
     3301 cttcgcggcg tattcatcgg caaaaaccga ctctttgaga aaagaaagaa cgcccataag
     3361 cgaacgccgg ataaagttat ttctttttga catttaattg ctcttctttc ttggccagca
     3421 atttcccgat aaccatcatt acgagaataa ttatacctat tcccgcgata gccgatagta
     3481 tataggcaaa acttaaaccc ggcaaacctt tttcttccca gcctttgaaa gcgtaatcag
     3541 gaataggcgc gctccagagg tttgagagtt ttccaaaccc ctcagggata tagccgacta
     3601 atcttcgcat ctcatcggct ccccattcac cccaggccgg cccggcctta aaatatttgg
     3661 gcaatataag tcccagagga gaaagcataa tcaataccgc tacccccagc caaaacttag
     3721 cagtggtttt catggctatc ttcccccttc ctcaaggagc tccggcgctt gtttctgcaa
     3781 atattttatg accagggcag ttacgatagc ctcaacccat ccaaaaacca agagatgacc
     3841 tcccagcata gccggcagag cgacatttaa tccataaggg cagtagaggg cctggaccac
     3901 cagggcgaca gtaatggcga tacaagccgc ccaggggccc aggagtaccg ccaccaggac
     3961 cccgcctgtg gcatggccgc ttgagccgcc gggaacgggg agattaaaca tcataatcac
     4021 aaagctgaat gccgcgccga tcgccagcat aggcacctgc cgcgctttta gcgtcttctg
     4081 aacaatcctt gaagctattg tccatatcgg cagcataacg gcgtaaaaaa ctccgcaggt
     4141 tgccggccct aaatatccgt cgggtatatg catatcttct ccctatctct tctactattt
     4201 taatatccgc gcttatcctg tcaactcttt tatcgagttc tttcccgaat ctatcgcaaa
     4261 aggaaagaac ttgattacac agattttaaa gagattacac agattttccg tcgggaatct
     4321 aatctgtgta atcatgggaa agatactttt tcagtgtaaa ctatattaca ataggggcgc
     4381 ttaaacttta gagccataat tccccattcc cgagcctaat tatcttgttg cctcagatta
     4441 tctcctatga taagataaaa gccgataggg agggggtatc ttggccagga ttgatattac
     4501 cataaagata gccggggaag ccggacaggg cctgcagaca atgggccagc ttctttccag
     4561 ggcctttgcc agaaagg
//
LOCUS       DATDUB010000047         2764 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_2201485, whole genome shotgun sequence.
ACCESSION   DATDUB010000047 DATDUB010000000
VERSION     DATDUB010000047.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2764)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2764)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2764
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2201485"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..566
                     /locus_tag="VJA84_00930"
     CDS             <1..566
                     /locus_tag="VJA84_00930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015052299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HLD40723.1"
                     /translation="KDIGVEFHSLSKTYNMTGWRVGWVCGNSEIVRGIAKVKSNIDSG
                     IFSAIQVAGVEALTGAQDHIQKMRAIYQERRDALCEGLAQIGWRVSKPKATFYVWVHV
                     PRPEGRGWASNKPEGYGAASYSRSHSPSHKGYDSRGFCAFLLEKADIVATPGVGFGEY
                     GEGYIRFALTVSKERIQQALERIKKYL"
     gene            complement(692..1387)
                     /locus_tag="VJA84_00935"
     CDS             complement(692..1387)
                     /locus_tag="VJA84_00935"
                     /inference="COORDINATES: protein motif:HMM:NF014566.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0071586 - CAAX-box protein processing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II CAAX endopeptidase family protein"
                     /protein_id="HLD40724.1"
                     /translation="MSKNIGSPLIAAVLLTLIAALESAKILPYAPFFLVYGSLAIVAS
                     LYYREIYLSRLKIAPRECLRLSLISAAIGILYISAFIALVGLFLRYNGGIRSLNWDII
                     FIYRFICQGIALSPIIKNTVLFLFIVGWAGVVEELFYRGALFGYLRIRRSFIQAALIS
                     SLFFGLRHSLQLLYISPYPAGAGAIYFLFSFTAGMLLSWLYEKTKCLTVCIVTHTAVN
                     LLGFPFLLNSLQN"
     gene            complement(1390..2634)
                     /locus_tag="VJA84_00940"
     CDS             complement(1390..2634)
                     /locus_tag="VJA84_00940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40725.1"
                     /translation="MGLEILRGEFIYLSFPRKRESRRLDSPVKPGNDWLLWFLKRYIL
                     FFSLICLFPAGGFSAENDFKADFSGDLTHLASGSETAAGKEYVSNLSRLRLELSWRWM
                     DYLSAFIAYDHSLLYSGFIKSPDFKQAQARQREQFFDQDDELLKRGNLRWEHGLYRSY
                     VTYKKEDWEVSFGRRQVSWGLGKFWAPTDLFNPFDPLSLEKDERRVRDNLRVAYFSPG
                     QDSLEGVYVPARSYENSSFGLRLIHPFQEKEIGIILGELKKNEIAGLHFLTNIGKSAL
                     RLEHTFNHYETDFFKTTVNIDYTFSNSLYLMGEYYYNGQGRRDKSVYQITRWNSGEID
                     FLGQDYLGALVGYDLTPLIRAETYIILNIRDESAFINPQLKWSLSSNSSLLLGGQFFS
                     GNDATEFERFHNLGYLRWRLFF"
BASE COUNT          773 a          679 c          676 g          636 t
ORIGIN      
        1 caaaggatat cggggtggaa ttccattctt tgtccaagac ctataatatg accggctggc
       61 gcgttggctg ggtctgcggc aattcggaga ttgtccgcgg gattgccaag gtaaaatcca
      121 acattgattc cgggatattc agcgccatcc aggttgccgg tgttgaggcc ttaaccggcg
      181 cgcaggatca tatccaaaag atgcgcgcta tctatcagga aagaagagac gccctttgcg
      241 aaggcctggc tcaaatcggc tggagggttt ctaagcctaa agccactttt tatgtctggg
      301 tccatgtccc caggccagag ggccgtggtt gggcttccaa taagccagaa ggctatggtg
      361 cggcttccta tagccgcagc catagcccaa gccacaaagg atacgattcc cgcggttttt
      421 gcgccttttt gctggagaag gcggatatcg tggctacccc gggggtggga tttggcgaat
      481 atggggaagg atatatccgt tttgccttaa cggtatccaa agaacggata cagcaagccc
      541 tggaacggat taagaaatat ttgtaagaag ggactgttgt gagattcacc ttttgtcatt
      601 gcccggttta accgggcaat ctaaatgtat tgattttatt atgtttctgg attcccgctt
      661 tcgcgggaat gacattctta ggcatttcgc attagttttg taaagaattc agtaaaaacg
      721 gaaaacccag caaattcacc gccgtatgag taacaataca aacggtcagg cattttgtct
      781 tttcataaag ccatgacaaa agcatcccgg ccgtaaaaga aaagagaaaa taaattgccc
      841 ccgccccggc cggataaggg ctgatataaa gcagttgcag ggaatgcctc aagccgaaga
      901 aaaggctgga aatgagcgcc gcctggataa atgagcggcg gatgcgcaaa tacccgaaaa
      961 gcgccccccg gtaaaaaagc tcctctacca ccccggccca gcccacgatg aacaggaaca
     1021 agaccgtatt tttgatgata ggagaaaggg caatcccctg gcagatgaag cggtaaataa
     1081 aaataatatc ccagtttaaa ctgcggatgc cgccgttata acgcaagaat aagccgacaa
     1141 gcgcgataaa agcggatatg tagagaatgc cgatagcggc gcttattaaa ctcaaacgca
     1201 aacactcacg cggcgctatc tttaaccgtg agaggtaaat ctcgcggtaa taaaggctgg
     1261 caactatagc cagggatccg taaactaaga aaaaaggcgc gtaaggcagg atcttagcgc
     1321 tctccagagc ggcaatcagg gtaagtaaaa cagcggcaat aagaggtgaa ccgatatttt
     1381 tgctcatttt taaaaaaata gtctccagcg caaatagccc aggttgtgaa agcgctcaaa
     1441 ctccgtagcg tcattgccgc taaagaactg ccctcccaag agcagactgc tgtttgatga
     1501 aagcgaccac ttcaactgcg gattgataaa ggcgctctca tcccggatat ttaagataat
     1561 ataggtctcg gcccggatta aaggggtcag gtcgtatcca accagggcgc ctaagtaatc
     1621 ctggcccagg aaatcaatct cgccgctatt ccagcgcgtt atctggtaaa cagacttgtc
     1681 cctcctgccc tgcccgttat aataatactc gcccatcaga tacaggctgt tagaaaaggt
     1741 gtaatcaata ttgaccgttg ttttaaaaaa atccgtttca tagtggttaa aggtatgctc
     1801 cagccgaaga gcggacttgc cgatattagt caggaaatgc aggccggcta tttcgttctt
     1861 tttaagctca cccaggatta tgccgatttc cttttcctgg aacgggtgta tcagccgcag
     1921 gccgaagctg gaattctcat aactcctggc cggcacatac actccctcca gagaatcctg
     1981 gccggggctg aaataggcaa cacgcaagtt gtccctgacc cggcgctcat ccttttctaa
     2041 gctcaagggg tcaaaagggt taaataaatc cgtaggggcc cagaacttcc ccaggcccca
     2101 ggaaacctgc ctgcggccaa aagaaacctc ccagtcctct tttttataag ttacataaga
     2161 acggtaaagg ccatgctccc agcgcaagtt cccccgcttt aataattcat cgtcttgatc
     2221 aaaaaactgt tccctctggc gggcttgagc ctgcttaaaa tccgggcttt tgataaaacc
     2281 gctgtataga aggctgtggt cataggcaat gaaagcggat aaataatcca tccagcgcca
     2341 ggaaagctcc agcctcaaac ggcttaaatt agaaacatat tccttgcccg cggcggtttc
     2401 cgagccgctg gccaagtggg taaggtcacc ggagaagtca gccttaaagt cgttttccgc
     2461 gctaaagccg cccgcgggaa aaaggcagat aaggctaaaa aacaatatat atcttttcaa
     2521 aaaccacaat aaccagtcat tccccggctt gaccggggaa tccagacgcc tggattcccg
     2581 ctttcgcggg aatgacaaat agataaattc cccccttaga atctcaagcc ccatctattc
     2641 aatcactccg tctcttaagc ggaagatccg cttggcctct tttaatatcg cggggtcgtg
     2701 ggtggcgaag ataaaggtaa tcccgctgtc ctggtttagg gtcttcatca ggtggatgag
     2761 ctct
//
LOCUS       DATDUB010000048         2680 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_2037585, whole genome shotgun sequence.
ACCESSION   DATDUB010000048 DATDUB010000000
VERSION     DATDUB010000048.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2680)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2680)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2680
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2037585"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..765
                     /locus_tag="VJA84_00945"
     CDS             <1..765
                     /locus_tag="VJA84_00945"
                     /inference="COORDINATES: protein motif:HMM:NF013257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 9 protein"
                     /protein_id="HLD40726.1"
                     /translation="KTAWLAYLSGAGLAVGFDLEGRGRLFKAALKPAREKKLMSQYLL
                     DLVRFLAILSGLNKDDIKDTVPELKVSDEDAVFAEDFLRERGIQKGELIVVLHPGGYF
                     PSQRWSVERFAQLANNLKEKYPVKIIVVASLAEEAIVNKLSGLMKIKPCVVLGLGLDK
                     AAAIIAQGSIFIGNNSGLLHIAAALGRPTVSTMGPTVPWLWMPQGDNQIVIRHNLECS
                     PCNRGVCREHKCMELITVEEMEKAVDDLLKKENTDS"
     gene            731..1768
                     /locus_tag="VJA84_00950"
     CDS             731..1768
                     /locus_tag="VJA84_00950"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 9 protein"
                     /protein_id="HLD40727.1"
                     /translation="MIYSKKKILIVNLGGMGDFLLSCPAVKALREYYQGAEIVLLTLA
                     RTKPVAGAFAYFDQIIAFDFSFLGAFKQALTLRRRNFDLVLNMRTLVSCPGALKMAFL
                     FYLIGAKLRAGRDTSGRGFFLDIKAPEDAVGSLPEYEYDLNTVRALGIPAEFSLPRLP
                     VRDEDMAYMDNFLKTRNIDPADMLIGINPFAPWLSKCWPIGNFAALIKALRKEFSCKI
                     VITGSSDEVEKALRLQDLAGAELAIASGETTFGQLAALIKRCSLYITNDTGPMHIAAI
                     LQAPLVALFGGGYLKRFDPRNISKKAIVFHKDAHCAPCDKVNCDSMKCLKEITPDEVM
                     AAARSLLGCSR"
     gene            2051..>2680
                     /locus_tag="VJA84_00955"
     CDS             2051..>2680
                     /locus_tag="VJA84_00955"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HLD40728.1"
                     /translation="MNLLEKIYLWFRDLVSKPDERGLSSAGYWQNRLRRDVLDRVVKA
                     EGKLLEIGCGEGLFLEQLSRINPRLRLFGIEREGAVLSEAQRRLNSDIRLVSSDAGRL
                     HFKDASFEWAVGVNLSICVESGAALAEILREAARVLKPGAKLIIEFRNKGNIFLRLKY
                     KWARHYDSTTQNHPLSAYYKKDVLDILGEAGFGVSNIEEIDFPLKGLPAI"
BASE COUNT          617 a          563 c          769 g          731 t
ORIGIN      
        1 aagaccgcct ggctggctta tttgagcggg gccggcctgg ctgttggctt tgatcttgaa
       61 ggccggggca ggctgtttaa ggccgccttg aaaccggcgc gagaaaaaaa gctgatgagc
      121 cagtatttgc tggatttggt caggtttctg gccattttgt caggattgaa taaggatgac
      181 atcaaggata ctgtcccgga attgaaagtt tcagatgaag acgcggtctt cgcggaagat
      241 tttctaagag aacgcgggat tcaaaaggga gagcttattg ttgtcctgca tccgggagga
      301 tatttcccca gccagcgctg gagcgtggag agatttgctc aactggcgaa taatttaaag
      361 gagaaatatc cggttaagat tatagttgtg gcttctttag ctgaagaggc aatagtaaat
      421 aagctctccg gcctaatgaa aatcaagccg tgtgtggttt taggtcttgg tttagataag
      481 gcggcggcaa taatcgccca aggcagtatt tttatcggca ataactccgg cctcctgcat
      541 attgccgcgg ctttgggaag gcccactgtc tcaacaatgg ggccgactgt gccctggctc
      601 tggatgccgc aaggtgataa tcagattgtg atccggcata acttggaatg tagtccttgt
      661 aacaggggtg tgtgccggga gcataagtgt atggagctaa ttaccgttga ggagatggag
      721 aaggcggtgg atgatttact caaaaaagaa aatactgata gttaacctgg gcgggatggg
      781 ggattttctt ttgagctgcc ctgccgtaaa ggccctgcgg gaatattatc aaggagcgga
      841 gattgtctta ttgacccttg cccgcactaa gccggtggcc ggggcctttg cttattttga
      901 tcagataatc gcctttgatt ttagtttttt gggggcgttt aagcaggccc ttaccttgcg
      961 ccggaggaat tttgacctgg tcttgaatat gcgcaccctg gtttcctgtc cgggcgcttt
     1021 gaaaatggcc tttctttttt atcttatcgg ggccaaactc cgcgccggac gggacacttc
     1081 cgggagagga ttttttctgg atatcaaggc gccggaagat gccgtcggga gtctgcccga
     1141 atacgaatat gacctgaata cggtcagggc attggggata ccggcagaat tcagcctgcc
     1201 gcgccttcct gtccgcgatg aggatatggc ttatatggat aatttcctga aaacgcggaa
     1261 tattgacccc gcggatatgc ttatcggtat caatcccttt gccccctggc taagcaaatg
     1321 ctggccaata gggaattttg ccgccttgat taaggccctg cgaaaggaat tttcctgcaa
     1381 gatagtgatt accggctcaa gtgatgaggt tgaaaaggcg cttagattgc aggacctggc
     1441 gggcgcggag ctggcaattg cttccggtga gactacattt ggccagttgg ccgccttgat
     1501 taaaagatgt tctctctata ttaccaatga caccgggccg atgcatatcg cggccatatt
     1561 gcaggcgcct ctggtggcct tgttcggggg gggatacctt aagcgttttg accccaggaa
     1621 tatctctaag aaagcaatcg tttttcataa ggacgcgcat tgcgctccct gcgataaagt
     1681 caattgcgat tcaatgaagt gtttaaagga gataaccccg gatgaggtga tggctgcggc
     1741 aagaagttta ttaggatgta gtcggtgaat gttgttatgg ggttacgcga gggcacgggt
     1801 cctgccaagg ttgtattttc gcggcaccgc gaggttttcc ccaccgagga aaacctcact
     1861 tgatgaatct gctcgctctt ccgccactga agcaatggcg gaaaccttgg ccgctcgcat
     1921 cttcaacatg ccgctcaaac acaaccttgt cacccgtgct tatgtagcgg tgcgatttat
     1981 cgcacatgcg aggagatttt tagttttgaa ttgtagtttt gccttttgag tttttacttt
     2041 tgaattttat atgaatctgc ttgagaaaat atatttatgg tttcgcgatt tggtctctaa
     2101 gccagacgaa agagggctgt cttcggccgg gtattggcag aaccggctaa ggcgcgatgt
     2161 cctggatagg gtggttaaag ccgaaggcaa gttgcttgag attggctgtg gggagggatt
     2221 atttcttgag cagttgtccc ggattaatcc ccgtcttcgg ctgtttggga ttgagcgcga
     2281 gggcgcggtt ttatccgagg cccaaagacg gctgaatagt gatatccgtc tggtatcttc
     2341 tgacgccggt aggcttcatt ttaaggatgc ctcttttgag tgggcagtgg gggtcaatct
     2401 ttctatctgc gtggaatccg gggcggccct ggcggagatt ttgcgggagg ctgcccgggt
     2461 gcttaagccg ggggcgaaat taatcattga attcaggaat aagggcaata ttttcttaag
     2521 gctgaaatat aaatgggcca ggcattatga ttctaccacc caaaatcatc ctttaagcgc
     2581 gtattataag aaagatgtgc ttgatatctt aggcgaagcc ggttttggcg taagcaatat
     2641 agaggagatt gacttccccc taaaaggcct tccggcgata
//
LOCUS       DATDUB010000049         2068 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_29651, whole genome shotgun sequence.
ACCESSION   DATDUB010000049 DATDUB010000000
VERSION     DATDUB010000049.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2068)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2068)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2068
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_29651"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..569)
                     /locus_tag="VJA84_00960"
     CDS             complement(<1..569)
                     /locus_tag="VJA84_00960"
                     /inference="COORDINATES: protein motif:HMM:TIGR00745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketopantoate reductase family protein"
                     /protein_id="HLD40729.1"
                     /translation="MKITVVGPGAMGCLLAAFLAKGKQEVWLLDKNPERAAKIREQGI
                     KVEGIGGNWLAKVNSAGDAKEIGGQDLVLVAVKAYDTKEAIANIKPLLKEDTLILTLQ
                     NGLGNIEIISEVYGQDCVLGGVTNMGATLLGPGWVRYAGKGDTVIGRLDGRIPVQLRS
                     IREVFNKSGIDARISKDIKSLLWSKLIINV"
     gene            complement(639..1394)
                     /gene="surE"
                     /locus_tag="VJA84_00965"
     CDS             complement(639..1394)
                     /gene="surE"
                     /locus_tag="VJA84_00965"
                     /EC_number="3.1.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014856969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008252 - nucleotidase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HLD40730.1"
                     /translation="MNILLTNDDGIYAEGIRVLYESLKDLGNVTIVAPDTERSAVGHA
                     ITLSDPLRVKKVTRGNKFFGYATTGTPADCVKLAIRAILRKRPDIVISGINLGPNTGY
                     SVLYSGTVSGATEGAILNIPSFAISLATFENPDYRVAAGFAKKLARLIINNKGIPHGT
                     LLNVNIPAVDKKDIKGVKIVRQSRTAIEERFDKREDPRKRTYYWLTGEIIKSDGHSDA
                     DIEAIRNNYISITPIRCDMTDYGFIEELKHWKI"
     gene            complement(1397..1999)
                     /locus_tag="VJA84_00970"
     CDS             complement(1397..1999)
                     /locus_tag="VJA84_00970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009439091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HLD40731.1"
                     /translation="MTFRERYEALKKKVVKRKKEFDAFITMLEKDSSWLTSPASTKYH
                     LNKEGGLLEHSVGVAEALLRFRDALAPQISEESCIMVGLLHDVGKIGMPGKPRYLKND
                     NDWEIRNRNITYKINPKEVYMGLAARSLYLIAKYIPLSDSEAQAILYHDGQYVEGNRE
                     AAHHETPLTLLAHFADLWTAHIFEEGRVIEEDTDYYDKKA"
BASE COUNT          514 a          547 c          419 g          588 t
ORIGIN      
        1 acattgatta tcagctttga ccacaaaagt gattttatgt ccttggatat ccgggcatct
       61 atcccggact tgttaaacac ctcccggata gagcgcagtt ggaccgggat cctgccgtct
      121 aagcggccga taacggtatc gccttttccg gcataacgca cccagcccgg ccccaacaat
      181 gtggccccca tattagtaac cccgcccaag acgcagtcct ggccgtagac ctccgagatg
      241 atctcaatat tccccagccc gttctgcagg gtgaggataa gggtgtcctc cttaagcaga
      301 ggcttgatat tggcaatcgc ctctttggta tcataggcct tgaccgccac aagaaccaga
      361 tcctggcccc cgatttcttt agcatcgccc gcggaattga ccttggccaa ccaattgccg
      421 ccgatacctt caacctttat cccctgttcc ctaatcttcg cggcgcgttc cggattttta
      481 tctaagagcc aaacctcctg tttcccttta gccaaaaacg ccgccaacaa acaccccata
      541 gcccccggcc caacaaccgt gattttcata tcttcacctc cttaaaaaag gggtcagatc
      601 cctttttcca gtcagccatt tgcagtaaaa attcttgttt atatcttcca atgtttcagt
      661 tcttctataa aaccataatc agtcatatcg cagcggatag gagtgatgga aatgtaatta
      721 ttgcggattg cttctatatc cgcgtcggaa tgcccgtctg acttgatgat ctctccggta
      781 agccaataat aggtgcgttt ccgggggtct tcgcgcttgt caaacctctc ctctatcgcg
      841 gtcctgctct gccggacaat ctttacccct ttaatatcct ttttgtctac tgccgggata
      901 ttcacattta gaagagtgcc gtgaggaatg cctttattgt ttataatcaa acgcgcaagc
      961 ttcttggcga atccggcggc aaccctataa tcaggattct caaaagttgc cagggaaatg
     1021 gcaaaggagg gaatatttaa tatagctcct tcggtggccc cggaaaccgt gccggaatat
     1081 aatacgctgt agcctgtatt tggaccaaga ttaatgcctg aaatcacaat atccggacgc
     1141 tttcttaaaa tagcccggat agccagcttc acgcaatccg cgggggttcc ggtagtggcg
     1201 taaccaaaga atttattccc ccttgttacc tttttcactc ttaaagggtc agaaagcgta
     1261 atcgcatggc ctaccgcgct tctttcggta tccggagcaa ctatagtcac attgcctaaa
     1321 tccttaaggg attcgtataa tacccggata ccctctgcat atataccatc atcattagtt
     1381 aaaaggatgt tcatatttaa gcctttttat cgtaataatc cgtatcctct tctataacgc
     1441 ggccttcttc aaagatgtgg gcggtccata gatccgcgaa atgcgctaaa agtgtaagcg
     1501 gcgtttcgtg gtgcgcggct tctctattgc cttccacata ctggccatca tgataaagga
     1561 tcgcctgggc ctcggaatca gacaaaggga tatatttggc gattaagtat aaactgcgcg
     1621 cggccagccc catatatact tctttaggat tgattttata ggtgatattc ctattcctta
     1681 tctcccaatc attatcattc tttagatacc tgggcttccc gggcataccg attttaccca
     1741 catcatgcaa gagcccgacc attatgcaag actcttcgga aatctgcggg gcaagggcat
     1801 ccctaaatct taaaagcgct tcggcaacgc ccacactatg ctccaaaagt ccgccttcct
     1861 tattcagatg gtatttcgtg cttgccgggc tggtaagcca cgatgaatct ttttcaagca
     1921 tagtaataaa agcgtcaaat tcttttttac gcttaactac ttttttcttt aatgcttcgt
     1981 agcgctccct gaatgtcata aactatcctt tcaaattgaa ttgtataatc tttcttgcgt
     2041 tctggctcag gcaacggaag aaagatta
//
LOCUS       DATDUB010000050         2753 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1538239, whole genome shotgun sequence.
ACCESSION   DATDUB010000050 DATDUB010000000
VERSION     DATDUB010000050.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2753)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2753)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2753
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1538239"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            235..963
                     /locus_tag="VJA84_00975"
     CDS             235..963
                     /locus_tag="VJA84_00975"
                     /inference="COORDINATES: protein motif:HMM:NF024258.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042578 - phosphoric ester hydrolase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase family protein"
                     /protein_id="HLD40732.1"
                     /translation="MRYAIFSDVHSNLEAFQAVILAYQKENIDHYLCLGDIVGYGTDY
                     SECIRLIKGLKAVTVAGNHEWGVCGKLPLESFTPLAKEAVAWTSKRLNPEELSFLGSL
                     ALTHSLEDFVLAHSSLEAPEEFYYLNNYDQAYNTFNLLRKTACFIGHTHKPGIFVQEN
                     ALLSFCKAGTLRLEENKKYIINAGSVGQPRDGDWRASFAVYDSCAKTVEIKRIGYDVE
                     TAQKKILASGLPEELALRLSSESI"
     gene            963..>2753
                     /gene="ligA"
                     /locus_tag="VJA84_00980"
     CDS             963..>2753
                     /gene="ligA"
                     /locus_tag="VJA84_00980"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: protein motif:HMM:NF005932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003911 - DNA ligase (NAD+) activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HLD40733.1"
                     /translation="MEINLAKKEIEKLRREILRHDYNYYALSQPKISDKEYDCLIRRL
                     KELEGAFPGLVSADSPTQRLTPVIQEEFKVIRHRQKMLSLDNVYSFEELKEWGLRVEK
                     GLGGGKAEYAAELKVDGLSANLTYENGLLVSGGTRGDGENGEDVTANIKTIRSIPLRL
                     TGSNVPELIEIRGEVYLGLKDFQAINKERKENEEALFANPRNAASGSLKLLDTAITAK
                     RNLNFFAHSLGEVRGTGFLSHWEALLRFKEYGVRVNPENRLFQNLDEVFEFCAYWQKS
                     RRRLNYEIDGVVIKVNSLEQRQTLGQTLKSPRWATAYKFPAHQVTTRLKDIIISVGRT
                     GVITPVADLEPVECAGVTISRATLHNFDEIKRLKIKIGDRVMLERSGEVIPKIIKVVD
                     SACGGREKDFQPPHNCPACNSPIVKEKEKEVAFRCPNPSCAAQLEKGLTHFAGRLCMD
                     IEGMGEALVRQLIEKGFVKDFSDIYYLTKEQLLGLELFKEKKAGNLLSAIEKSKRREL
                     SRLIYGLGIRNAGEKASYVLARRFKNIDNLARAGKEELEGIYEIGTVISASVADFFKQ
                     ETVKRLIRRLKQAGVNTTQEQFEVRKSILTG"
BASE COUNT          717 a          579 c          768 g          689 t
ORIGIN      
        1 ctgggcgcgg aatctggctg acggcagggt ccagctggtg ggctaggccg aagaggagac
       61 cataaaaaac ttcttagagc ggattaagcg gaggttttcg gtttatatca gcgatattga
      121 cctgcaatgg attgaggcat caggggaatt tcccgatttt cagatacgat tttagacctt
      181 taaataatcc tttcttacta ttgaccattg accatcgact attgactatt ttaaatgcgc
      241 tacgccattt tttcggatgt tcattctaat ttagaggcct ttcaggcggt cattctggcc
      301 tatcaaaagg agaatattga ccattatctt tgcctgggcg atattgtcgg ttatgggacc
      361 gactattcgg aatgtatccg tttaataaaa ggattaaaag cggtaactgt tgccggcaat
      421 cacgaatggg gcgtctgcgg gaagctgcct ttagagagtt ttaccccttt ggctaaggag
      481 gcggtagcct ggacctctaa aaggcttaat ccggaagaat tgagtttctt gggcagtctg
      541 gccttaacgc acagcctgga agattttgtc ctggcgcata gttcattgga ggcgccggag
      601 gaattctatt atctgaataa ttatgatcag gcctacaaca cctttaacct gctaaggaaa
      661 accgcctgtt ttattggaca tacccacaaa ccgggaattt ttgtgcaaga aaacgccctt
      721 ttaagttttt gtaaggcggg aaccctccgg cttgaagaaa ataaaaaata tatcattaat
      781 gctggaagcg ttggccagcc ccgtgacggc gactggcggg cctcttttgc cgtatatgac
      841 agttgtgcca agacagttga aataaagaga ataggttatg acgttgagac tgcccaaaag
      901 aaaatcctgg cttccggcct tcccgaggag ttagccctgc gtttatcatc ggaatccata
      961 taatggagat aaacctggcg aaaaaggaga ttgagaagtt aaggcgggaa attctgcgcc
     1021 acgactataa ttattacgcg ctttcccaac cgaagatatc ggataaggaa tacgattgcc
     1081 taatccgccg gctcaaggaa ttggaaggcg cgtttcccgg attggtcagc gcggattctc
     1141 ccacccagcg cctgacccct gtgattcagg aagagtttaa ggtcatccgg caccggcaga
     1201 agatgctttc cttggataat gtctattcct ttgaagagtt gaaagaatgg ggtttgaggg
     1261 tggagaaggg tttgggggga gggaaggcgg aatacgccgc ggaattaaag gtagacgggc
     1321 taagcgccaa tcttacctat gaaaacggtc tcttggtttc cgggggcacc agaggcgacg
     1381 gagaaaacgg cgaggatgtt accgccaata tcaagaccat tcgttccatt ccccttcgtt
     1441 tgacagggtc aaatgtcccg gagcttattg agatcagggg agaggtttat ctgggattaa
     1501 aggattttca ggccataaat aaagagagga aggaaaacga ggaggccctt tttgccaatc
     1561 cccgcaatgc cgccagcggt tcgctgaaac tgttggatac cgcgattacc gctaaaagga
     1621 accttaattt ttttgcccat tcccttggag aagtcagggg gacgggtttt cttagccact
     1681 gggaggcctt gctaaggttt aaggaatacg gtgtgcgggt gaatccggaa aaccggcttt
     1741 ttcaaaatct ggatgaggtt tttgaattct gcgcttattg gcagaagagc cggcgccggc
     1801 ttaactatga gattgacggg gtggtgatta aagtcaattc tcttgaacag cgccagaccc
     1861 tggggcaaac cttaaagagc ccccgttggg caacagccta taagttccct gcccaccagg
     1921 ttaccacccg gcttaaagat attattattt ccgtgggcag gaccggggtg attaccccgg
     1981 tggcggattt agagccggta gagtgcgccg gggtaactat cagccgggcc actttgcata
     2041 attttgatga gattaagcgg ctgaagatta aaatcgggga cagggtgatg ctggagcgct
     2101 caggtgaggt gatccctaag attatcaagg tggttgattc cgcctgcggc ggcagggaaa
     2161 aggatttcca gcctccccat aactgtccgg cctgtaattc ccctattgta aaggaaaagg
     2221 aaaaagaggt ggcctttcgc tgtcccaatc cttcctgcgc ggcgcaattg gaaaaaggcc
     2281 tgacccattt tgccggccgc ctgtgtatgg acattgaagg gatgggcgag gccctggtca
     2341 ggcagttgat tgaaaaaggc ttcgtcaagg atttctcgga tatttattat ttaactaagg
     2401 aacagctttt gggtttagag ctgtttaagg agaaaaaagc cgggaacctg ctttcggcga
     2461 tagaaaagag caagcgccgg gaattgtccc ggcttatcta cggcttaggc atacgtaacg
     2521 cgggggaaaa ggcctcttat gtcctggcgc ggaggtttaa gaatatagac aatcttgcgc
     2581 gggccgggaa agaagagctg gaaggcattt atgagattgg aacggtcatc tcggcctcgg
     2641 tggcggactt ttttaagcag gaaacagtga aaagattgat tcgccggctt aaacaagccg
     2701 gggtgaatac tacacaagag cagtttgagg tcaggaagtc cattttgacc ggt
//
LOCUS       DATDUB010000051         3913 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_695783, whole genome shotgun sequence.
ACCESSION   DATDUB010000051 DATDUB010000000
VERSION     DATDUB010000051.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3913)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3913)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3913
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_695783"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..201
                     /locus_tag="VJA84_00985"
     CDS             <1..201
                     /locus_tag="VJA84_00985"
                     /inference="COORDINATES: protein motif:HMM:NF020133.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase"
                     /protein_id="HLD40734.1"
                     /translation="EAAFRLYPQVSKVKEVLFKEAGLGSALMSGSGSAVFGLVDSRKE
                     GLRIAKRVSRFKDWKVFVVKTK"
     gene            324..725
                     /locus_tag="VJA84_00990"
     CDS             324..725
                     /locus_tag="VJA84_00990"
                     /inference="COORDINATES: protein motif:HMM:NF015959.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0030435 - sporulation resulting in
                     formation of a cellular spore [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="septation protein SpoVG family protein"
                     /protein_id="HLD40735.1"
                     /translation="MEITEVRIFLKDSPDKKLKAYATVTFDGAFVVRNIKVIEGTGGL
                     FIAMPSRKIKQPCPKCGFRNEARSKYCNQCASQLPLVSQPITGESQATDMQGEHKDIA
                     HPITQAFRELLQKKVLEAFDQEKKKSGSAAA"
     gene            739..809
                     /locus_tag="VJA84_00995"
     tRNA            739..809
                     /locus_tag="VJA84_00995"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:771..773,aa:Gln,seq:ttg)
     gene            853..2112
                     /locus_tag="VJA84_01000"
     CDS             853..2112
                     /locus_tag="VJA84_01000"
                     /inference="COORDINATES: protein motif:HMM:NF012695.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NTP transferase domain-containing protein"
                     /protein_id="HLD40736.1"
                     /translation="MSNNWTAIILAAGVGTRMKSSLPKVLHQVCGRPMLAYVLDLAKG
                     LGIKNILVVTGHKRELLKDLLTRYKAKEVYQDKRLGTADAIKRCQPALRGFSGNVLVL
                     YGDQPLLKKETLQKLIQRHTETKAQATILSAYPQDPFGYGRIIRDNFSRITAIVEEKD
                     ASAREKEVGEINTGIICFKKDSLFKTIPKIKSDNTKKEYYLTDAIKIMAREGALIESV
                     SISQDVQQAQGINSRIDLAQALKAMRLRILAKFMLEGVTVIDPDATYIEEGVRIGRDT
                     VIYPFTFIEKDVIIGNFCQIGPFCHLRPETVIEDRVTVGNFTEITRSRLGRDSFMKHF
                     SYLGDTVAGKAVNIGCGTVVANFDGRNKNKTVIEDQAFIGSDTVLRAPVRIGKKAVTG
                     AGSVVTKDVAAGTVVAGVPARILKKDD"
     gene            2118..3056
                     /locus_tag="VJA84_01005"
     CDS             2118..3056
                     /locus_tag="VJA84_01005"
                     /EC_number="2.7.6.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005007376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004749 - ribose phosphate diphosphokinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0006015 - 5-phosphoribose 1-diphosphate
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009156 - ribonucleoside monophosphate
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009165 - nucleotide biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate pyrophosphokinase"
                     /protein_id="HLD40737.1"
                     /translation="MDKLALVTGNAHIDLAKDICKCLKIKLSDCLVGRFSEGEIRVKV
                     EENIRGKDVFVIQPTCPPVNDNLMELLIVIDALKRASAKRITAVVPYYGYARQDRKDQ
                     PRVPITAKLVANLITVAGANRVLTMDLHAGQIQGFFDIPLDHLFAVGVFVDYFEKLKL
                     KDLVIVSPDVGGIKMARAYAKRLSAGLAIVDKRRISPESTEAVHILGDIEDKNVILVD
                     DMVSTGSSLIEAVEILAKRGAKEIRAAITHGVLCGSAIERIDKSKNLKELLITDSIPL
                     DDNKKHPRIQVLSIAGLLGEAIKRIHNEESVSSLFD"
     gene            3111..3806
                     /locus_tag="VJA84_01010"
     CDS             3111..3806
                     /locus_tag="VJA84_01010"
                     /inference="COORDINATES: protein motif:HMM:TIGR00731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0008097 - 5S rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA];
                     GO_process: GO:0006950 - response to stress [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25"
                     /protein_id="HLD40738.1"
                     /translation="MEEVILEVEKRTDIGTGRVNRLRKAAGLPAVVYGEGQSPINLQL
                     SAKEFAGIVAGHKGGSFMIKLRIKDGSKREDKAVLIKEIQHHPVKDNVIHVDFNEISL
                     TKNIRVKVPVAAKGEAIGVKRDAGVLDHVIWELEIECLPASIPEVIEVDVSNLQIGQS
                     IHVKDVVVPAGVKVLNDPEAAVLAVAAPTKEEAALPAEAAEGQAKLEPEVIKEKKEKV
                     EGETASAPAGKKG"
BASE COUNT         1063 a          812 c         1117 g          921 t
ORIGIN      
        1 gaggcggctt ttaggcttta ccctcaagtg tctaaggtta aagaggtatt atttaaagag
       61 gcaggcttag ggagcgcgct tatgtccggc tcgggaagcg cggtcttcgg actggttgat
      121 tccagaaagg agggtttgag aatagcaaaa agggtcagcc gttttaagga ttggaaggtt
      181 tttgtggtaa aaactaaata ggatggaaga tatgaagggt caatagtcaa tggaaagagg
      241 aaacgataac atattgtata gaccattgac tatcgactat cgacccttaa ttatttgact
      301 ttaataggag gtaatataca gctatggaaa taaccgaggt aagaattttc ttaaaagatt
      361 caccggataa aaaattaaag gcatacgcca cagtaacatt tgacggcgcc tttgtggtca
      421 ggaatataaa ggtaattgag ggcaccggag gactgtttat cgctatgcct tcgcgcaaga
      481 tcaaacagcc ctgccctaag tgcggattca ggaatgaggc ccgcagtaaa tactgcaacc
      541 agtgcgcctc ccagcttcct ttggtctccc agccgataac cggcgagagc caggcaaccg
      601 atatgcaggg agagcataag gatatcgccc atcccattac ccaggccttc agggagcttt
      661 tacaaaagaa ggtgcttgag gcttttgatc aggagaagaa aaagtccggc tccgcggcag
      721 catagcggaa agattaactg cccggtagtg taatggtagc acatcagaat ttgggtctga
      781 gcgtcatggt tcgaatccat gccgggcaac ttatctgttt aagtgaggac gacgatctgt
      841 aaaggttaat ttatgtcaaa taattggacc gcgataatcc tggccgcggg cgttggcacg
      901 aggatgaaat cctcactgcc taaggtcctg catcaggtct gcggcaggcc gatgcttgct
      961 tatgtcctgg atttggctaa aggcctgggg ataaagaata tcttggtggt caccggccat
     1021 aaaagagagc ttttgaaaga tttgctcacc cgctataagg ccaaagaggt ttatcaggat
     1081 aaacgtttag gtaccgcgga cgccattaaa cgttgtcagc cggccttgag gggtttttca
     1141 ggaaatgtcc ttgtccttta tggcgaccag cctttgctta aaaaagagac cctgcaaaaa
     1201 ctgatccaaa ggcatacgga aactaaggcc caggcaacca tcttgagcgc ctatccgcaa
     1261 gacccttttg gctatggccg gattatccgg gataattttt cccggataac cgcgattgtg
     1321 gaggagaagg atgcctctgc gcgggagaaa gaggttggtg agataaatac cgggataatc
     1381 tgtttcaaga aagacagcct ttttaagacc attcccaaga taaaatccga taacaccaaa
     1441 aaggagtatt acctgactga cgccataaag attatggcgc gagagggggc gctgatagag
     1501 tcggtttcca ttagccagga tgtccagcag gcccagggaa ttaattcccg gatagatttg
     1561 gcccaggcgc taaaggctat gcgcttgagg atattagcga aatttatgct ggaaggggta
     1621 acagttattg atccggatgc cacctatata gaagaaggtg taagaatagg ccgggatacg
     1681 gtaatttatc cctttacatt cattgaaaaa gatgttataa ttggaaactt ctgtcaaata
     1741 gggccttttt gtcatttaag gccggaaacc gtgattgagg atagggttac cgtgggcaat
     1801 tttaccgaga taacccgttc gcgcctgggc cgggattcct ttatgaagca cttcagctat
     1861 ctcggggata cggtcgcggg taaggcggta aatatcggct gtggcacggt agtggctaat
     1921 tttgacggca ggaataaaaa taagacggtt attgaggatc aggcctttat cggctcggat
     1981 acggttttaa gggccccggt aagaatcggc aaaaaagccg ttaccggggc gggttcagta
     2041 gtcaccaaag atgtcgcggc agggacggtg gtagccggag tcccggccag aatattaaag
     2101 aaagatgatt aaatagcatg gataaattag ccttagttac cgggaacgcg catattgacc
     2161 tggccaagga tatctgtaaa tgcctgaaga tcaagctttc cgactgtctg gttggcagat
     2221 tcagcgaggg ggagatccgg gtcaaggttg aggagaacat ccggggtaag gatgtctttg
     2281 ttatccagcc gacctgtcct ccggtcaatg ataatctgat ggagcttttg attgtgattg
     2341 acgcccttaa aagggcctcg gccaagagga taaccgcggt ggtgccgtat tacggctatg
     2401 cccgccagga ccgcaaggac cagccgagag ttcccattac cgcgaagctg gtggccaacc
     2461 tgattacggt tgccggtgcg aaccgggttt tgacgatgga cctgcatgcc ggtcagatcc
     2521 agggcttttt tgatatacct ttggaccatc tttttgccgt tggggtcttt gtggactatt
     2581 ttgagaagct caaacttaag gacttggtga ttgtttcgcc cgatgtgggc gggatcaaga
     2641 tggccagggc ctatgccaag agattaagcg ccggcctggc tatcgtggat aaacgccgga
     2701 tatccccgga gtccaccgag gcggtgcata tccttggaga tattgaagac aaaaatgtta
     2761 tcctggtgga tgacatggtc tctaccggtt cgtccttaat tgaggcggtg gagatcctgg
     2821 ccaagcgcgg ggccaaagaa atccgggcgg ccataaccca cggcgtgctt tgcggctcgg
     2881 ccattgagag aatagacaag agcaagaatc taaaagagct cttgattacc gatagcatac
     2941 ctttggatga caataagaaa catccccgta tccaggtttt atccattgcc ggtcttttag
     3001 gtgaggccat caagaggata cataacgagg aatcagtaag ttcgctattt gattaacatt
     3061 aagagctgta agtagggatc ccgccaaagg cggggtccga ggagatagaa atggaagaag
     3121 taattttaga ggttgaaaaa agaacggata ttgggactgg cagggtcaac cgcctgcgta
     3181 aagccgcggg tttgccggcg gtggtttacg gggaaggcca aagcccgatt aatctccagc
     3241 tgtcggccaa ggaatttgcc ggcatcgttg ccgggcacaa gggcgggtct tttatgatta
     3301 agctgcggat taaggacggt tcaaagcgcg aggacaaggc ggtgctgatt aaggaaatcc
     3361 agcaccatcc ggttaaggac aatgtcattc atgttgattt taacgagatc tccctgacca
     3421 agaatatccg ggtcaaggtc ccggtagccg ccaaaggcga ggccatcggg gtaaaacgcg
     3481 atgccggggt attagaccat gttatctggg aactggaaat tgagtgcctg cctgccagta
     3541 ttcctgaagt aatagaggtg gatgtttcta atctgcagat aggtcagtct attcatgtga
     3601 aggatgttgt cgtgcctgcc ggggttaagg tcttgaatga cccggaggcc gcggtgctgg
     3661 cagtggccgc tccgactaag gaagaggcgg ctttacccgc ggaggccgct gaagggcagg
     3721 ctaagcttga gccggaagta attaaagaga agaaggaaaa ggttgagggg gagactgctt
     3781 ccgcgcctgc cggcaaaaag ggttaatcat gatgaccctt cgacgcattc catttgctca
     3841 gggtcatggt gagcgagcaa agcgagtcga accatgaaaa taattaaata cggctctcaa
     3901 gaattaagaa aaa
//
LOCUS       DATDUB010000052         3729 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_2372219, whole genome shotgun sequence.
ACCESSION   DATDUB010000052 DATDUB010000000
VERSION     DATDUB010000052.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3729)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3729)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3729
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2372219"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..285)
                     /locus_tag="VJA84_01015"
     CDS             complement(<1..285)
                     /locus_tag="VJA84_01015"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011393737.1"
                     /note="catalyzes the isomerization between
                     2-isopropylmalate and 3-isopropylmalate in leucine
                     biosynthesis; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HLD40739.1"
                     /translation="MPYTITEKILLRHTPGKKDIHPGEFIWAKVDLALANDITAPLAI
                     EEFRKSGTKKVFDTRKIALVPDHFTPAKDLKSSNQARMLADFAREFGIKNY"
     gene            complement(353..1594)
                     /gene="fabF"
                     /locus_tag="VJA84_01020"
     CDS             complement(353..1594)
                     /gene="fabF"
                     /locus_tag="VJA84_01020"
                     /EC_number="2.3.1.179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006633717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase II"
                     /protein_id="HLD40740.1"
                     /translation="MKRRVVVTGLGVISPVGNDIGTFWFSLLAGKSGIGMAKSFDVSA
                     FDSRIAGEVKDFDPARYFDFKEAKRMEKFAQYAAAASKEAVKDSRLDLTIEDLTQIGV
                     LIGSGMGSLRMIEEQYKTYLEKGPSRISPFMIPMMIANEAAGQVSILLGLKGPNSCTV
                     TACASGANAIGDAFRVIQNGDAEVMLTGGTESCITPLGVGGFCALKALSRRNDSPQKA
                     SRPFDKDRDGFVIAEGAGIVVLESLEHALKRKARIYAEMSGYGMSGDAYHMTAPDPTG
                     EGAMRSMRGALKDSGIKPEEVDYINAHGTSTALNDKIETLAIKKLFGAHAYKLAVNST
                     KSMTGHLLGAAGGVEFIVCCLSIHHSKLHPTVNQENPDPECDLDYVPNLSRDKEVKTA
                     LSNSLGFGGHNVTLAVRKFSR"
     gene            complement(1780..2025)
                     /locus_tag="VJA84_01025"
     CDS             complement(1780..2025)
                     /locus_tag="VJA84_01025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018267300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HLD40741.1"
                     /translation="MASADKVKSIIAEQLGVKAEEVTPAASFIDDLGADSLDTVELVM
                     ALEEEFGIEIPDEDAEKMATVGDAIKYIEEKSAAAGK"
     gene            complement(2131..2874)
                     /gene="fabG"
                     /locus_tag="VJA84_01030"
     CDS             complement(2131..2874)
                     /gene="fabG"
                     /locus_tag="VJA84_01030"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003739222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004316 - 3-oxoacyl-[acyl-carrier-protein]
                     reductase (NADPH) activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-[acyl-carrier-protein] reductase"
                     /protein_id="HLD40742.1"
                     /translation="MRLKDKVALVTGSAKGIGREIALNLAKEGANIAIWDVNPEAALQ
                     TQKDIEALGIKAMSAKVDVTNSSQVEQEVNKILDKFQKIDILVNNAGITKDGLLLRMA
                     ESDWDAVINVNLKGTFICTKTLSRVMLKQKSGKIVNIASIIGIIGNAGQANYSASKAG
                     VIALTKTTAKELASRGICVNAIAPGFIQTDMTAKLPTEVQEKMLSHIPLNRFGKPEDV
                     AKLCLFLSSSESDYITGQTIVIDGGMVMV"
     gene            complement(2892..>3729)
                     /gene="fabD"
                     /locus_tag="VJA84_01035"
     CDS             complement(2892..>3729)
                     /gene="fabD"
                     /locus_tag="VJA84_01035"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: protein motif:HMM:TIGR00128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004314 - [acyl-carrier-protein]
                     S-malonyltransferase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HLD40743.1"
                     /translation="EVFDKADKVLGFPISRLCFEGPQDLLTKTQNCQPAIFTASIAAL
                     EAFKSRITNHKLRTTKYTAGLSLGEYSAYAASGVLSFEDALRLVKKRAELMEEATGKY
                     PGKMSAVLGLGREEIQEICLSSGAEIANFNCPAQVVITGRVEAIEKAKQLALEKGAKR
                     VIDLEVSGAFHSSLMKEAAEELNQQLKDYNIQDAEIPVISNVTARAQEKSLEIRENMV
                     RQVFSPVLWEDSIRYIAAQGVKTFYEIGPGAILKGLIRKIDSSLEVINIGKAEDINKC
                     KV"
BASE COUNT          869 a         1003 c          781 g         1076 t
ORIGIN      
        1 ataattcttg atcccgaatt cccgggcaaa atcggctaac atcctggcct ggtttgagct
       61 cttcaggtct ttggccgggg taaaatggtc agggaccagg gcgatcttac gggtatcaaa
      121 gacctttttc gtcccggact tgcggaattc ttctatggct aaaggagcgg taatatcgtt
      181 agccaaagcc aaatccacct ttgcccagat aaactctccg gggtggatat ccttttttcc
      241 gggagtatgc cttaaaagta ttttctccgt gattgtatat ggcattttac ttttgagttt
      301 aacttttccc cgcctatagc ttaatattcg gcgggatccc gctttgtttc acttagcggg
      361 aaaattttct cactgccagg gtgacattgt ggccgccaaa ccctaaggaa ttagacaaag
      421 cggttttcac ctctttatcc cgcgacaggt tgggcacata atccaagtcg cattccgggt
      481 cagggttttc ctggtttacg gtaggatgaa gtttggagtg atggatggat aaacaacaga
      541 ctataaactc aactcctcca gccgccccta aaaggtggcc ggtcatagac ttggtggaat
      601 taaccgcgag cttataggca tgcgcgccga ataatttctt aatggctaag gtctctattt
      661 tatcatttaa agcggtagag gtgccgtggg cattgatata atctacttct tccggtttaa
      721 tcccgctatc ctttaatgcc ccccgcatag aacgcattgc cccttcgccg gtgggatcag
      781 gcgcggtcat atgataggca tctccggaca tcccgtaacc ggacatctcc gcgtaaatcc
      841 tggcctttct ttttaaggca tgctctaagg attctaaaac cactatcccc gcgccttcag
      901 caatcacaaa accgtccctg tctttatcaa atggccggga ggccttttgg ggtgagtcgt
      961 tgcgccggga caaggcctta agcgcgcaga aaccccctac gccaagcggg gtgatacagc
     1021 tttccgtgcc gccggtaagc attacctcgg catcaccgtt ctggatcacc cggaaggcgt
     1081 ccccaatggc gttagccccg gaggcgcagg cagtaaccgt gcaggagttt ggccctttaa
     1141 gccctaaaag gatagaaacc tgtccggcgg cctcattggc aatcatcatc gggatcataa
     1201 acgggctgat ccgggaaggg cctttctcca gataagtctt atactgctcc tcaatcatcc
     1261 tcaaactgcc catacccgag ccgataagca ccccgatttg ggtcaaatcc tctatagtca
     1321 ggtctagcct tgagtcttta accgcctctt tactggccgc cgccgcgtat tgggcaaact
     1381 tctccatccg cttagcttcc ttaaagtcaa aatatctggc gggatcaaag tccttgacct
     1441 caccggctat ccgggaatca aacgcgctga cgtcaaagct cttagccatg cctatcccgc
     1501 tcttaccggc aagcaaagag aaccaaaaag tcccgatatc gtttcctacc ggagaaatca
     1561 cccctaaacc cgtaactact acccgtcttt tcacttgaaa atctccaaaa cttgtttata
     1621 tccactgcct tagattagga ctgtctccag gcccaagaac tagcgcccga ttttcattct
     1681 tattggtgtc ccgcttttag cggagcatga aggtttcata aataatcagc cccgaccatt
     1741 aaattgatcg gggctttaaa ttatataagc tcaagacatc tatttaccgg cggcagccga
     1801 cttctcttct atatatttta tggcgtcgcc aaccgtggcc attttctccg cgtcttcatc
     1861 cgggatctca atcccaaact cttcttctaa tgccattacc agctctacgg tatctaagga
     1921 atccgcgcct aaatcgtcaa taaaagacgc cgcgggagtg acctcttccg cctttacccc
     1981 taattgctcc gctatgattg attttacctt atctgctgat gccattattt tcctccttta
     2041 ttaatagtca ataattacgg gtctatagtc tattatttat ttttattgac tattgaccat
     2101 caactatcga ccctttcttt ttttatacga ttacaccata accataccgc catctatgac
     2161 aatggtctgg ccggtaatgt aatcggattc gcttgaagac aggaataagc acaattttgc
     2221 cacatcttca ggctttccga atctatttaa ggggatatgg gaaagcattt tctcctgcac
     2281 ctctgtaggc agcttcgcgg tcatatccgt ctggataaat cccggagcta tcgcgtttac
     2341 gcagattcct cgcgaggcta attccttagc cgtagtcttg gtcaaggcta tgacccccgc
     2401 cttagatgcc gaataattag cctggcccgc attaccgata ataccaatga ttgaggcaat
     2461 attaacaatc ttgcctgatt tctgctttag catcaccctg gagagggttt tggtgcagat
     2521 aaatgtcccc ttcaggttga catttatcac cgcgtcccag tcgctttctg ccatccttag
     2581 caaaaggccg tccttggtaa tgccggcatt gtttaccaat atatcaatct tctgaaattt
     2641 gtcaagaatt ttgtttactt cctgttcaac ctggctggaa ttggtgacat ccaccttggc
     2701 gctcattgcc tttatcccca gggcctctat atccttctgg gtctggaggg cggcttcagg
     2761 attaacatcc cagatagcga tatttgcccc ttctttagcc aggtttaaag ctatttcccg
     2821 gccgatgcct ttggctgaac cggtaactaa agccacttta tcttttagac gcattacctc
     2881 gctcctttcc ctcacacttt acacttattt atatcttcgg cctttcctat atttattacc
     2941 tctaaagagg aatctatctt tcggattaac ccctttagaa tagcgccagg gccgatttca
     3001 tagaatgtct taaccccttg agcggcgata taccttatgg aatcttccca aagcaccggg
     3061 ctaaacacct gtcgaaccat attttcccgt atctccaggc ttttttcctg cgcgcgggca
     3121 gtgacattgc taattaccgg gatttcggca tcctggatat tataatcttt gagctgttga
     3181 tttaactctt ctgccgcctc tttcatcagt gaagaatgaa aagccccgga gacctccagg
     3241 tcaataaccc tttttgcccc tttttccagg gctaattgtt tggctttttc tatagcctct
     3301 accctgccgg taatgaccac ctgggcaggg caattaaaat tggctatttc cgctccagat
     3361 gataggcaaa tctcctggat ctcttcgcgt cctaacccta aaaccgcgct catcttaccg
     3421 ggatatttac cggttgcctc ttccattaat tccgcccttt tcttaaccaa tctcaaggcg
     3481 tcttcaaagc ttaagacccc gcttgccgcg taggcggaat actcacctaa gcttaggccg
     3541 gccgtgtatt ttgtggttcg taatttgtga ttcgtgattc gtgacttaaa ggcctccagg
     3601 gcggcgatgc tggcggtaaa gatggccggc tggcaattct gggtcttggt cagcagatcc
     3661 tgcggccctt caaaacagag ccgagagatg ggaaaaccta agaccttatc cgctttatca
     3721 aagacctct
//
LOCUS       DATDUB010000053         7635 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_696055, whole genome shotgun sequence.
ACCESSION   DATDUB010000053 DATDUB010000000
VERSION     DATDUB010000053.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 7635)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7635)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7635
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_696055"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2604)
                     /gene="uvrA"
                     /locus_tag="VJA84_01040"
     CDS             complement(<1..2604)
                     /gene="uvrA"
                     /locus_tag="VJA84_01040"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013276429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HLD40744.1"
                     /translation="MYTDKIIIKGARVHNLKNIDLSLPRNKLIVITGLSGSGKSSLAF
                     DTIYAEGQRRYVESLSSYARQFLEQLQKPDVDYIEGLSPAISIEQRASSGNPRSTVAT
                     QTEIYDYLRLLFARVGIVHCYKCRKPITRQSLDEIINKILSQMTDKRIEIFAPLIRAR
                     KGEYRDIPAQIQKAGFSKARVDGIIYELENFPKLDKYKIHTIETVVDRLKVGLADKKR
                     LTDSLETALKIGQGCAIINCEGREELFSQNFACVDCGISYSEVQPRNFSFNSPYGACP
                     GCNGLGIKVEFDLDFIIPDRDKAVIEAIEPWKRGGRGYIMYYKSLFREACHSFKIDLN
                     TPFRKLSKEQQRLILYGTDELIGLRRYEGVLPHLERLFKETDSDYLKEEISRFMSNQP
                     CPDCAGARLKKESLSVRIENLSIYDLTRLSVSKALDFFKGLNLREKERLIARQILKEI
                     NAKLQFCLNVGLGYLTLDRLSSTLSGGEAQRIRLATQVGSALVGVLYVLDEPSIGLHQ
                     RDNDKLLNTLKALRDLGNTLIVVEHDEATIRSSDWVVDLGPGAGRYGGEVIFNGKSQD
                     LLKCQGSLTSQYLNKKLKILPASRTLKPDPRKILKITGASEHNLKDITVEFPLGLFIC
                     VTGVSGSGKSTLAYEILYPALTRKLYKSKLKAGSHKKIEGYQHIDKVIVVDQSPIGRT
                     PRSNPATYTGVYGYIRDLFAQLPDSKVRGYKPGRFSFNVQGGRCEACAGDGIKKIEMH
                     FLPDVYVQCEVCQGERFNRQTLEIKYKGKSISEVLAMSVEEARHIFANIPRIKNILDT
                     LYDVGLGYIQLGQSATTLSGGEAQRVKLSSELSRRATGKTLYLLDEPTTGLHFADVDK
                     LLAVLRRLVDKG"
     gene            complement(2737..4854)
                     /locus_tag="VJA84_01045"
     CDS             complement(2737..4854)
                     /locus_tag="VJA84_01045"
                     /inference="COORDINATES: protein motif:HMM:NF022481.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2723 domain-containing protein"
                     /protein_id="HLD40745.1"
                     /translation="MGTKKENILAGLVFLLTFSTYLLTLCPTVSTGDSGELISAAYTL
                     GVPHSPGYPLFCLFGKLFTFIPIGSIAYRVNLMCAFFASLSAVVIYFIIFRLIQRINP
                     ETAFINKFLPAVVSSLIYAYSNTFWSQAVSAEVYAIWIFFLSLSFLILIIWTEKETVK
                     SSSNLDSRFRGNDNPRKDYYLYLFSFLYGVSFTCHQLTVFFAPGCLALILMYRPKIWR
                     EWKTLFLMFDFFLLGLCLYLYVPLRAAANPGMNWNRIKDINGFVDYLLRRQYGSPSEN
                     FSPAYVTQAFNFDFAKFKQLLGYFKYEFSPFCVLFIFGFIPLIFKAKRYLISFLLILI
                     FSGLRVWMNISPQEAHSIYIGRVYLLAGFLIIVVLLGLGIYYLLDFYTRRDKRILYLS
                     LALLIALMPTAPLALNYIENDQSQNYVAYDYGRNILDTLDKDAILLGHGDNALFILAY
                     LKLAEKLRPDVTVYDDISGDVFKETPFDFSSMDNDKKDAVIASLLEKTKRPLYISFGH
                     TLVGTTRHPKELTGIIYRVLREGESVSQQIKEKYWRTYTLRDVFDGYLENKDFLTREI
                     ISVYHIALGTYFISMNEAMGISLYHTAAKMAGNTKFVQETLAMYYSLRGMNEEAISSA
                     KKAVSLGTNDPETYYNLGVTYAKAEMYEAAISSWNTALRLNPNFKKAQDYIQKAQDII
                     AGTAAATPSLTLPTRRPGHNLLK"
     gene            complement(4856..5608)
                     /locus_tag="VJA84_01050"
     CDS             complement(4856..5608)
                     /locus_tag="VJA84_01050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010942433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenol monophosphomannose synthase"
                     /protein_id="HLD40746.1"
                     /translation="MKTLVILPTYNEAGNIRGIAERILSLGDYVHILIVDDNSADGTR
                     EIAGELTERYKDRVFLLERPGKLGLGSAYVQGFRFALEKGYDYAFEMDSDWSHDPQEI
                     PNLLEAAKEADVVIGSRYIGGIRIMNWPLARLALSYSANAYARKMAGLTLSDCTSGFK
                     CFSRKVLETLPLDKIVSNGYAFQIEVNFWCQRLGFKIKEIPIVFSERRSGASKMSKDI
                     AKEAFWLGVRLFVKRIYDFNPPSLTLPTGGRE"
     gene            complement(5795..6973)
                     /locus_tag="VJA84_01055"
     CDS             complement(5795..6973)
                     /locus_tag="VJA84_01055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005770051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HLD40747.1"
                     /translation="METIIPRLFTPPKQSFFLFGPRGTGKSTWLKAHMPDAIWIDLLE
                     ADQFRSYSARPERLKELVLAETEKKIVVIDEIQKVPDLLTVVHSLIEKKLKLRFILTG
                     SSPRKLKKTGTDLLAGRVIRQALHPFMAVELGRKFNLILALKEGLLPLVFSAAAPEAV
                     LRTYASLYVREEVQAEGLVRNIGNFSRFLEAASFSHGSLLNTSNVARDCEVERKTVEA
                     YMTILEDLLLAYRIPVFSKKAKRATVAHPKFYYFDAGVYRSLRPRGPLDRPEEIEGAA
                     LEGLVAQHLTAWNSYRGEKNKVYFWRTAAGSEVDFVVYGEEVFWAIEVKNTSRIRPED
                     LRSLRSFKSEYPQSIAFLLYRGKERLKKGDVLCIPCDEFLLNLSPEKIQITYGVSPGH
                     "
     gene            complement(7090..7278)
                     /locus_tag="VJA84_01060"
     CDS             complement(7090..7278)
                     /locus_tag="VJA84_01060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40748.1"
                     /translation="MIDKYAKYAKNTLKKDQRISIRISKQDLIGIQSKAVDEGIPYQT
                     LVTSLVHKYVTGHLAPTR"
BASE COUNT         1979 a         1912 c         1673 g         2071 t
ORIGIN      
        1 gcctttatcc actaaacggc gcaggaccgc taaaagcttg tccacatcgg caaaatgcag
       61 cccggtagta ggctcatcca gcagataaag ggttttccct gtggcgcgcc ggcttaattc
      121 cgaagaaagc ttgaccctct gggcctctcc accagaaagg gtagtggccg actgccccaa
      181 ttggatatag cccagaccca catcataaag ggtatctagg atattcttta tcctggggat
      241 attagcaaag atatgcctgg cctcttccac agacattgcc aagacctcgg agatggattt
      301 tcctttgtat tttatctcta aagtctgccg gttaaagcgc tctccctggc aaacctcgca
      361 ctgcacatag acatccggca ggaaatgcat ctctatcttc tttatcccgt ccccggcaca
      421 ggcttcacag cggccaccct ggacattaaa ggagaatctt cccggtttat aaccccggac
      481 cttagaatcc gggagttgag cgaataagtc ccggatatag ccgtaaactc cggtgtaggt
      541 agccgggtta gagcgggggg tgcggccaat cggtgactgg tcaaccacga ttaccttatc
      601 aatatgctgg tatccctcaa tctttttatg gcttccggct tttagtttgc ttttgtagag
      661 tttccgcgtc agggccggat acagtatttc ataggccagg gtggactttc cggagccgga
      721 taccccggtg acgcagatga ataaacccag aggaaattct acggttatat ctttgaggtt
      781 atgttcgctg gccccggtaa tcttaagtat ttttctgggg tcaggcttta gtgtccttga
      841 ggcaggcagt atctttaatt ttttatttaa gtattgggaa gtaagggagc cttggcattt
      901 tagaagatcc tggcttttgc cgttaaatat gacctctcct ccatatcttc ccgctcccgg
      961 gcctaaatcc accacccagt cgctggaacg gatagtggct tcatcgtgtt ccactactat
     1021 cagggtattg cccaaatctc taagggcctt cagggtgttt aagagcttat cattgtctct
     1081 ttggtgcagg ccgatgctgg gctcatccaa gacatacaaa acccctacca gcgccgagcc
     1141 tacctgggtg gccagccgta tccgctgggc ctcgcctccg gaaagggtag aactcaaccg
     1201 gtctaaggtc aaatatccca ggcccacatt caggcagaat tgcagtttgg cgtttatctc
     1261 tttgagtatt tgcctggcaa taagcctttc cttttcccta agatttaggc ccttgaaaaa
     1321 atccagggct ttactcaccg acagccgggt tagatcgtaa attgatagat tttctatcct
     1381 gacgcttaaa ctctcctttt taagccttgc tcccgcgcaa tccgggcagg gctggttgga
     1441 cataaaacgg gagatttctt cttttaggta atccgagtcg gtctccttaa ataacctttc
     1501 cagatgcggg agaaccccct catatctgcg gagaccgatt agctcatcag tgccatagag
     1561 gataagtctt tgctgttctt tgctcaattt cctgaaaggg gtattcaagt caatcttgaa
     1621 agaatggcag gcctccctaa agaggctctt gtaatacata atataacccc ggccgcccct
     1681 tttccagggt tctatagcct caattaccgc cttatccctg tccgggatga taaaatccag
     1741 gtcaaattca acctttatcc ctaagccatt gcatcccggg caggccccat aaggagaatt
     1801 aaaggaaaaa ttccgcggct ggacctcgga gtagcttatc ccgcagtcaa cacaggcaaa
     1861 gttttggcta aagagctcct ccctgccttc gcaattgatt atggcgcaac cctggccgat
     1921 ttttaaggcg gtttccagag aatcggtcag ccttttctta tccgccaggc ccacttttaa
     1981 cctgtctacc acggtttcaa tagtatggat tttatatttg tctaacttag ggaaattttc
     2041 caactcatag ataataccgt caaccctggc cttggaaaaa cccgccttct ggatctgggc
     2101 cgggatgtcc cgatattccc cttttctggc ccggatcaaa ggagcaaaga tttcaatcct
     2161 tttatccgtc atctgggaga gtatcttatt gatgatttca tctaagctct ggcgggtaat
     2221 aggtttgcgg catttatagc aatgcactat ccctacgcgg gcaaataaaa ggcgcaggta
     2281 atcgtagatt tcagtctggg tggctacggt ggagcgggga ttgccggagc tcgcgcgctg
     2341 ttcaatggag atcgccgggg acagcccttc aatatagtcc acatccggct tttgcagctg
     2401 ctccaggaac tggcgggcat aactggagag gctttccaca taacggcgct ggccctcggc
     2461 gtaaatggtg tcaaaggcca aagaagactt gccggagccg gataagccgg taattacaat
     2521 cagcttattc ctgggcaagc tcaagtcaat atttttaagg ttatgcaccc tggccccttt
     2581 gatgataatt ttatcagtat acatttctta aattatggtt cctccccctt acagactggg
     2641 tcacaatgtc atcctgagcg gatagcgaag gatctcgtct tttaaattac cgacgagatt
     2701 cttcggtcgc tctgctccct cagaatgaca aaatggtcat tttaagagat tatgacccgg
     2761 tctccttgtg gggagggtta gggagggggt agcggcagcg gtccccgcga tgatatcttg
     2821 agccttctgg atataatcct gggccttttt gaaattcggg tttagcctta aagcggtatt
     2881 ccagctggaa atagccgctt catacatttc agccttggca taggttactc ccaggttata
     2941 ataggtctcc gggtcattag tccccaggct gactgctttc ttggccgagc tgatagcctc
     3001 ttcattcatc ccccttaaag aataatacat tgccagggtc tcctggacga atttggtgtt
     3061 tccggccatc ttggccgcgg tgtggtaaag gcttatcccc attgcctcat tcattgagat
     3121 aaagtatgtg cccaaggcaa tatggtaaac cgagataatc tcccgggtca aaaagtcctt
     3181 attttccaga taaccgtcaa agacatcccg aagggtgtag gtccgccagt atttctcttt
     3241 tatttgctgg cttacgcttt ccccttccct taatacccgg tagattatgc cggttaattc
     3301 cttggggtgg cgggtagtcc ctaccagggt atgcccaaag ctgatataaa gcggcctttt
     3361 ggtcttttcc agcaggctgg cgataaccgc gtctttcttg tcattatcca tagaggagaa
     3421 atcaaaaggg gtctccttaa agacatctcc ggatatgtcg tcataaaccg taacatccgg
     3481 ccttagcttt tccgcgagtt tcaggtaagc caggataaat aaggcgttat ccccgtggcc
     3541 taaaaggata gcgtccttat ccagggtatc taagatattc ctgccgtaat cataggccac
     3601 ataattctgg ctctggtcgt tttctatgta atttaaggcc agcggcgcgg taggcataag
     3661 cgcgatcagc agggccaggc taaggtagag aatcctttta tcgcgccggg tgtaaaaatc
     3721 tagcagataa tatatcccta atcccaataa gactactatt ataaggaatc cggccaagag
     3781 ataaacccgg cctatgtata tgctatgcgc ttcttgaggg cttatattca tccagacgcg
     3841 caggccggaa aagataagga tgagcaaaaa actgatcaga taacgcttag ccttgaatat
     3901 gagcggtata aacccaaaga taaacaagac gcagaatggg ctgaattcat atttgaaata
     3961 cccaagaagc tgtttaaact tcgcgaagtc aaaattaaag gcttgggtca cataggcggg
     4021 gctgaagttt tccgatgggc ttccgtattg ccggcgcagt aaataatcaa cgaatccgtt
     4081 tatgtccttg atcctgttcc agttcatccc cgggttagcc gcggcccgaa gagggacata
     4141 taaatacagg cacagcccca aaaggaagaa atcaaacatc aagaacaggg tcttccactc
     4201 cctccatatt ttaggccgat acatcaagat caaggccaaa cagccggggg caaagaatac
     4261 ggtcaactgg tggcaggtaa aggaaacccc gtaaagaaaa gaaaacagat ataagtaata
     4321 atcttttcgc ggattgtcat tcccgcgaaa gcgggaatcc agattagatg aactcttgac
     4381 tgtctctttc tccgtccata ttattaatat taaaaaagac aaggacagaa agaatatcca
     4441 aatggcatag acctccgcgg agactgcctg gctccagaag gtattggaat aggcatagat
     4501 caggctggat acgactgccg gaaggaattt attgataaaa gccgtttcag gatttatccg
     4561 ctggatcagc ctgaagatta taaaatatat cactaccgct gaaaggctgg caaaaaaggc
     4621 gcacatcaag tttacccggt aggcaatact tcctatgggg ataaaggtaa agagcttgcc
     4681 gaacaggcaa aataagggat agcccggtga atgcggcact cccagggtat aggcggcgct
     4741 aatcaactcc ccggaatccc cggtagaaac cgtagggcat aaggtcaaga ggtaggtgga
     4801 aaaagtaagc aaaaaaacca gcccggccag gatattttct tttttagtac ccattttatt
     4861 ccctcccccc ggtggggagg gttagggagg ggggattaaa atcgtatatc ctttttacaa
     4921 acaagcgcac ccccagccaa aacgcctcct tagcgatatc ttttgacatc ttagaagccc
     4981 cggacctgcg ttcgctaaag acaatgggga tttctttaat tttaaatcct aatctctggc
     5041 accagaaatt cacctcaatc tgaaaggcat agccgttaga gacaatcttg tctaacggca
     5101 gggtctctaa gaccttacgc gaaaaacact taaatccgct ggtgcagtcg cttagggtca
     5161 gaccggccat cttgcgggcg taggcattgg cgctatagct taaggccagc cgggctaagg
     5221 gccagttcat aatccgtatc cccccgatat accttgagcc gatgactaca tctgcctctt
     5281 ttgccgcctc caggagattc ggaatttcct gcgggtcgtg agaccaatcc gaatccatct
     5341 caaaggcata gtcatagcct ttttctaaag caaacctgaa cccctggaca taggccgaac
     5401 ccagccccaa tttccccggc cgctccagca aaaacaccct gtccttgtat ctttcggtta
     5461 attccccggc aatctctctt gtgccgtcgg cggaattatc gtctacgata aggatatgga
     5521 cataatcgcc cagcgataat atcctttcgg ctatcccccg gatatttccg gcctcgttat
     5581 aggtcggcag aataaccagt gttttcattc ttacagttta ccattgaatg caaggccctt
     5641 ggcttcattg cgagaaaacc ccgctttagt caagaagctt tatctttagc gctatccccc
     5701 acctcaagct gtattcccct tcagacctaa ccgattaatt cccggcgcct taactcctta
     5761 gcaattccaa tacggcatcc ttatcaatta atgtctaatg tccggggctg accccatagg
     5821 ttatttgtat tttttcaggg ctcaagttta gcaggaattc atcgcaaggg atacaaagca
     5881 catcgccttt tttcaagcgt tctttgccgc gatacaataa aaacgcgatg ctttgcggat
     5941 actccgattt aaagcttctt agggagcgaa gatcttccgg tcttatcctt gaagtatttt
     6001 taacttctat ggcccaaaat acctcttccc catatactac aaaatcaacc tcggatccgg
     6061 ccgcggtcct ccaaaaataa actttatttt tttcgcctcg gtaagaattc cacgccgtta
     6121 aatgctgggc aaccagccct tcaagcgccg ctccttctat ttcctcgggc ctatccaaag
     6181 gcccgcgagg cctaagcgaa cggtaaaccc cggcgtcgaa atagtagaac ttaggatggg
     6241 ctaccgtcgc ccttttagct ttttttgaaa aaacaggtat acgataagcc aaaagaaggt
     6301 cctcaagtat tgtcatatac gcttctactg ttttcctttc aacctcacaa tctctggcga
     6361 cattactcgt attaagcaat gagccgtgag aaaagcttgc cgcttcaaga aatcttgaaa
     6421 aattgccgat gttacgcacc agcccttccg cttgaacttc ttctctgaca tataacgaag
     6481 cataagtcct taacaccgcc tcgggagcgg cagccgaaaa cacaagcggc agaagccctt
     6541 cttttaacgc caaaataaga ttaaatttcc tgccaagttc aaccgccata aaaggatgca
     6601 acgcctgtct aatcactctt ccggcgagca agtccgttcc agttttcttc aattttcgcg
     6661 ggcttgaacc cgtaagaata aacctaagct taagtttttt ttcaataaga gaatgcacta
     6721 cggttaataa atcgggaact ttctgaattt catcaataac tacgattttc ttctcggttt
     6781 cagcaagcac aagctcctta agccgttccg gcctggcgct gtatgagcga aattggtcag
     6841 cttccaataa atcaatccag atggcatccg gcatatgcgc cttgagccat gttgatttcc
     6901 ccgttccgcg cggcccgaaa agaaaaaaac tctgcttggg cggcgtaaat aatcttggta
     6961 ttattgtttc cacaataagt ccttttttgg aatcagcaac tccataatat tactgtcaaa
     7021 cccaggcctt gtcaagcctt ttaatgccta atgtccgtag ttgaagagcg cattgccctt
     7081 cacgctcatt tatcgtgtcg gcgctaagtg accggtcaca tacttatgca ccaggctggt
     7141 aactaatgtt tgatagggaa tcccttcatc cacggctttg ctctggatgc caatcagatc
     7201 ctgttttgat atccggatgc tgatcctctg gtcctttttt aaggtattct tagcatattt
     7261 ggcatattta tcaatcatat ccttcatatt cgcgacagga gtgattctcc tttttggatg
     7321 gaatccagta attctttttc ttctctgtca agcttatact tgcgcatcgc aatcacctcc
     7381 ccgggtcaaa atattcttta gtttttatta gaaacccctc atactcatcc gcgaccttat
     7441 cccaggtgaa gcccttagcg tattcctttg ctttcctgcc catctctttg cgcaagcatt
     7501 catttccaga aaaacaggca aattttataa agatttaaca tatttcagcg attttctaaa
     7561 gtttatgaaa ttaacaaaag actggaacaa cccttgttct tcccaagtgt tacttaattc
     7621 ataaaaattg acaat
//
LOCUS       DATDUB010000054         3382 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1370367, whole genome shotgun sequence.
ACCESSION   DATDUB010000054 DATDUB010000000
VERSION     DATDUB010000054.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3382)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3382)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3382
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1370367"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..305)
                     /locus_tag="VJA84_01065"
     CDS             complement(<1..305)
                     /locus_tag="VJA84_01065"
                     /inference="COORDINATES: protein motif:HMM:NF016593.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate synthase, component I"
                     /protein_id="HLD40749.1"
                     /translation="MPYLIWKSFDYKGGALNIFEALREKENVFFLDSSLRKYGQGRYS
                     FLGCEPFYVFKGQGPAALEELRRLLERYKFKTPKTDFPFVGGAVGYFSYDWGLSLEW"
     gene            complement(277..1098)
                     /locus_tag="VJA84_01070"
     CDS             complement(277..1098)
                     /locus_tag="VJA84_01070"
                     /inference="COORDINATES: protein motif:HMM:TIGR00573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004527 - exonuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exonuclease domain-containing protein"
                     /protein_id="HLD40750.1"
                     /translation="MDRIIDDVDFVVFDVETTGLSPKDGDRIVEIGALRYKNGQALDS
                     FSSLLNPQRPVSPGAFAVNRISSEMVKDAPKAAEVLPKFLEFAGKSCLAGYNVGFDMG
                     FLENELGLLGQSLAEDTAVVDIIQMARRTFPGLSSYGLGNFSRWLGCSEPQDHRALSD
                     VLLTAQVFGRLLLELKKKGIEDFLAFYNLFGVNPKLSEDITNQHIAAIQKAIDLSVRL
                     KLKYYSSSAAKVTEREVSPKEIRREGKSQYLVGYCHLRKDERTFKINAILNLEII"
     gene            complement(1150..2475)
                     /locus_tag="VJA84_01075"
     CDS             complement(1150..2475)
                     /locus_tag="VJA84_01075"
                     /inference="COORDINATES: protein motif:HMM:NF021445.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerol lysyltransferase
                     domain-containing protein"
                     /protein_id="HLD40751.1"
                     /translation="MRDKVNLKQLVPSGYCLKCLGCCRFSDNLTIWASPGCRLVENSG
                     GYRCEHLNEKDNRCAIYPKRPLDCRLYPFLLVKRTGQDACPTIWLGLHKSCLFIEENR
                     PEVRGYADYLRKNLSRPEAISEIRENPGIYADYQENVEVVSQLKGIYKKIFIPKLNRL
                     TLKDKPIVDKYLKKIKANLSGYHFAPLFIWKDLFNISWALIEGNLCLFYQDNIGMFMP
                     LAPIGNGNDSVIKKCFEIMDFYNPNKEVSRVENVSEEIPGRTKLKDTEYLCSREELAE
                     LKGDRYKHKRSSCNYFVRNYPHQVFAYKRSMLKDCLGLYQLWRNQREESNKDVIYRQM
                     LEDSGVSFNAALRQAKGIGLSGYVVKVKEEIKACSLGYPLNKETFCILFEVCDLGLKG
                     IARFIFREFCRALSGYKYINIMGCSDLENLRRVKLSFHPIKEIKAYNMY"
     gene            complement(2517..2873)
                     /gene="metG"
                     /locus_tag="VJA84_01080"
     CDS             complement(2517..2873)
                     /gene="metG"
                     /locus_tag="VJA84_01080"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: protein motif:HMM:TIGR00399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004825 - methionine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006431 - methionyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase subunit beta"
                     /protein_id="HLD40752.1"
                     /translation="MCYNIQIKEEMHMVSYGKFREIELKVARIQEVTAHPNADRLYVI
                     KVDLGDIQKQIVAGIRASYKPEDLLGRQVVVVNNLEPAVIRGVESQGMLLAASDESGI
                     AFVSPQREVKPGSVVK"
     gene            2901..>3382
                     /locus_tag="VJA84_01085"
     CDS             2901..>3382
                     /locus_tag="VJA84_01085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013625335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HLD40753.1"
                     /translation="MQYDRFQQEAIDCINQGHSVIVSAPTGAGKTAIAEYVIEECLKE
                     NKGVVYTAPIKALSNQKFRDFQHKYPEKIGILTGDISLNPEAPVLIMTTEIFRNKILD
                     EPGSLKKFSWVIYDEIHYIDNPERGTVWEESLILLPNHIRILALSSTVPNINEFSAWL
                     "
BASE COUNT          893 a          949 c          661 g          879 t
ORIGIN      
        1 atccattcca ggctcaagcc ccagtcatag gaaaaatatc ccactgcccc gccgacaaaa
       61 ggaaaatctg ttttgggggt tttaaattta tatctttcca aaagccgcct taattcctca
      121 agcgcggccg gaccctggcc cttaaagaca taaaacggct cacagcccaa gaaagaatac
      181 ctcccctggc cgtatttacg cagactgctg tccaagaaaa agacattttc cttttcccgc
      241 aaggcctcaa atatatttaa ggcgccgcct ttataatcaa atgatttcca gattaagtat
      301 ggcattgatt ttgaaggtgc gctcgtcttt gcgcaggtgg cagtaaccta ctaagtattg
      361 ggatttgccc tcccggcgga tttccttggg gctgacctct ctctcggtaa ccttggccgc
      421 ggagctggaa taatatttca gtttcagcct cacggataag tctatcgcct tttgtatggc
      481 cgcgatatgc tgattggtga tatcttcgct caacttagga ttaaccccga acaaattgta
      541 aaaggcaaga aagtcttcta tccctttttt ctttaattct aaaagcaggc ggccaaatac
      601 ctgggcggtc aagagcacat cgcttaaggc ccggtggtct tgcggctcgg aacaccccag
      661 ccagcgggaa aaattcccca ggccgtaact gctcaatccg gggaatgtcc tgcgggccat
      721 ctggatgatg tctaccaccg cggtatcttc cgcgagggac tggcccagca atcccaattc
      781 attttccagg aaccccatat caaaacccac attgtatccg gcaagacagc tcttgcctgc
      841 aaactccagg aatttaggca aaacctccgc ggctttcggg gcgtctttga ccatctccga
      901 gctgatgcga ttaaccgcga aggcccccgg ggaaaccggc ctctggggat taagcaggga
      961 ggaaaacgaa tctaaggcct gtccattttt ataacgcagg gccccgatct ccactatccg
     1021 gtccccatcc ttgggcgaaa gtccggtagt ctccacatca aagactacaa aatccacatc
     1081 gtctattatt ctatccataa tcactatttt tctccccctt gacgggggag gttaggtggg
     1141 ggtgataaat tagtacatat tgtatgcttt tatttctttt atcggatgaa aagacagctt
     1201 tactcttctt aaattctcca aatccgaaca acccataatg tttatgtatt tgtatccgct
     1261 caaagcgcgg cagaattccc tgaagataaa ccgggcaatc ccctttaatc ccaggtcgca
     1321 gacctcaaac aggatacaaa aggtttcttt attcaaagga taccccagcg aacaggcctt
     1381 aatctcctct ttcaccttca ccacatatcc ggacaagccg attcctttgg cctgccttaa
     1441 tgccgcgtta aaactcaccc cgctatcctc aagcatctgc cggtaaatca catctttatt
     1501 gctttcctcg cgctgatttc tccagagctg atacagtccc aggcaatcct tgagcataga
     1561 ccgcttatag gcaaaaacct gatgcgggta attgcggaca aagtaattac aactggaacg
     1621 cttatgctta tacctgtccc cctttaattc cgcgagctcc tcccgcgaac aaagatattc
     1681 cgtatccttt aattttgtcc gacccgggat ttcttctgaa acattctcta cccggctgac
     1741 ctctttatta ggattataaa aatccataat ctcaaagcac ttcttaatca cactgtcatt
     1801 gccattgcct atcggcgcaa ggggcataaa catcccgata ttatcctgat aaaaaaggca
     1861 aagattgccc tcaatcagcg cccaagaaat attaaataaa tccttccaga taaacaaagg
     1921 cgcgaaatga taccccgaaa ggttagcctt aattttctta aggtatttat caactatagg
     1981 cttatcttta agggtaagtc tattaagttt tgggataaat atctttttat atatcccttt
     2041 taactgactg actacctcta cattctcctg ataatccgcg tagattcccg gattctcgcg
     2101 tatctctgaa attgcctccg gacggcttaa gttttttcta agataatcgg catacccccg
     2161 gacttcaggc ctattctcct caataaacaa acagctctta tgcaggccca gccaaatggt
     2221 gggacaggca tcctggcctg tccttttgac cagcaagaaa ggatagagcc gacaatccag
     2281 cggcctttta ggatatatgg cacagcgatt atccttttca ttgagatgct cacagcgata
     2341 accaccgcta ttttctacta atcgacagcc cggagaagcc caaatagtaa gattatcact
     2401 aaaccggcag cagcccaggc atttcaggca ataccctgaa ggaaccaatt gctttaaatt
     2461 taccttatcc cgcacccaga actcctaaac tctccaaact ctcaaactcc tgaactctac
     2521 tttaccacgc tcccgggttt cacttccctc tgcgggctaa caaaggcaat cccgctttca
     2581 tccgaggccg ctaacagcat cccctggctc tccacccccc ggatcaccgc cggctccagg
     2641 ttattcacca ccaccacctg tctgcccagc aaatcctccg gcttataaga agcgcggatc
     2701 ccggccacaa tctgcttctg gatatcccct aaatcaacct taatcacata cagccggtcg
     2761 gcgttgggat gcgccgtaac ctcttgtatc cttgccactt tcagctctat ctcccggaac
     2821 tttccataac tcaccatatg catttcctcc ttaatttgaa tattataaca catattattg
     2881 ccttatgcta taatacctct atgcaatacg accgttttca gcaggaggcc attgattgta
     2941 tcaatcaggg gcattcggtg attgtctcgg cgcctaccgg agcgggaaag accgcgattg
     3001 ccgaatatgt gattgaagaa tgcctcaaag agaataaagg ggtggtctat accgccccga
     3061 tcaaagccct ctccaatcag aaattccgcg acttccagca caaatacccg gaaaaaatcg
     3121 gcatcctcac cggagacatc tctcttaacc ccgaggcccc ggtcttgatt atgactaccg
     3181 agatcttccg caacaagatc ctggatgagc ccggctcatt aaagaagttt tcctgggtga
     3241 tctatgacga aatccattac attgataacc cggaacgggg cacggtctgg gaggaatccc
     3301 tgatcctcct gcctaaccac atccgcatcc tggcccttag ctcgaccgtg cctaatatca
     3361 atgagtttag cgcctggctg ga
//
LOCUS       DATDUB010000055         2037 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_370722, whole genome shotgun sequence.
ACCESSION   DATDUB010000055 DATDUB010000000
VERSION     DATDUB010000055.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2037)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2037)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2037
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_370722"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..274
                     /locus_tag="VJA84_01090"
     CDS             <1..274
                     /locus_tag="VJA84_01090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012056315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="galactose-1-phosphate uridylyltransferase"
                     /protein_id="HLD40754.1"
                     /translation="QDAFCQMNQEQIQELAKILKAVLARVNEVLFRPAYNFIIYTSPL
                     NVEHKEGYHWHIEIMPKLTRVAGFEWGTGFYIVPTPPELAAKYLKG"
     gene            301..1311
                     /gene="gap"
                     /locus_tag="VJA84_01095"
     CDS             301..1311
                     /gene="gap"
                     /locus_tag="VJA84_01095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007290067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA];
                     GO_process: GO:0019682 - glyceraldehyde-3-phosphate
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HLD40755.1"
                     /translation="MAVKVGINGFGRIGRLVYRAGLNNKNIEFVAVNDLPVGTKTLAH
                     LLKYDSTFGTLKDEVKTTDTSLIVNGKELKIISYKLPAGIPWKALGVEIVVESTGLFT
                     EKEKAQGHLAGGAKKVIISAPAKDEDVTIVMGVNENMYDPKKHTIISNASCTTNCLAP
                     LAKVLLDNFGIKHGLMTTIHSYTNDQKILDLPHKDLRRARAAAVSMIPTSTGAAKAIG
                     AVLPQLKGKMDGYAMRVPTPDVSITDLTCELEKATTIAEINAAFKKAASGAMSHILEY
                     SEAPLVSSDFVGNPKSCIFDPELTKVIDGDFVKVLGWYDNEWGYSNRVVDLIEFIAQK
                     GL"
     gene            1315..>2037
                     /locus_tag="VJA84_01100"
     CDS             1315..>2037
                     /locus_tag="VJA84_01100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014560136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HLD40756.1"
                     /translation="MAKLTVKDLELEDKKVLLRCDFNVPQDENLNITDDTRIRASLAT
                     IKYILSKNPRKLILTSHLGRPDGKVVAKYSLKPVAQRLKELLGQEVKMLTDCVGETVK
                     KDIESAKETLILLENSRFHPEEEKNDPEFSRALAGLAEVFVNDAFGSAHRAHGSTEGV
                     THYLKSASGLLLEKEINYLGGALEKPKKPFVVILGGAKVSDKITVIENLLPKADEIII
                     GGGMCYTFLKAQGRQIGNSKLEK"
BASE COUNT          582 a          440 c          515 g          500 t
ORIGIN      
        1 tcaggacgct ttttgtcaaa tgaaccagga acagatccag gaattggcca agatattaaa
       61 agcggtgctg gcgcgggtca atgaggtttt attccgcccg gcgtataatt ttatcattta
      121 cacttcacct ttaaatgtgg agcataaaga aggctaccac tggcatattg aaataatgcc
      181 caagcttacc cgggtggccg gttttgaatg gggcaccggt ttttacatcg tccccacccc
      241 cccggagtta gcggcaaaat acttaaaagg ataaccaaaa aattaacagg aggtaataaa
      301 atggcggtaa aagttggaat taacggtttt ggcaggattg ggagattggt gtatcgggcc
      361 gggcttaata ataagaatat cgagtttgtg gcggtcaacg acctgccggt gggcaccaaa
      421 accctggccc atctcttaaa atatgattct actttcggga cattgaaaga tgaggtaaaa
      481 accactgata cctccctgat tgtcaatggc aaagagctta aaattataag ttataaatta
      541 ccggcgggga ttccctggaa ggctttagga gtggagatag tggttgagtc taccggactt
      601 tttactgaaa aagagaaagc ccaggggcat ttggcgggcg gggccaagaa ggtcattatt
      661 tccgctccgg ccaaggatga agatgttacc attgtcatgg gggtaaatga gaatatgtat
      721 gatcctaaga aacatactat catctctaat gcctcctgca ccaccaattg cctggctcct
      781 ctggctaagg ttctgctgga taactttggc atcaagcacg gtcttatgac cactattcat
      841 tcctatacca acgaccagaa gattctggat ctgccgcata aggatttaag aagggcgcga
      901 gccgcggcag tctcgatgat tcctacctca accggcgccg ccaaggccat cggagcggta
      961 ttgccccagc ttaaaggcaa gatggatggc tacgctatgc gggttcctac cccggatgtc
     1021 tcaattactg atttgacctg tgaactggaa aaagccacca ctatcgctga aattaacgcc
     1081 gccttcaaaa aggccgcctc cggcgcgatg agccatatcc tggaatattc agaggcgcct
     1141 ttagtttcca gcgactttgt cggcaatccc aaatcatgta tctttgaccc ggagttgacc
     1201 aaggttattg acggagactt tgtcaaggtc ttaggctggt acgacaacga atggggctac
     1261 agcaaccggg tcgtggacct gattgaattt attgcccaga aaggccttta agtaatggca
     1321 aagttaacgg ttaaagacct ggagcttgaa gataagaagg ttttacttag gtgcgatttt
     1381 aacgtgcctc aggatgaaaa cttaaatatt accgatgata cccgtattcg ggcgtctttg
     1441 gctaccataa aatatatctt aagcaaaaac ccaagaaaac ttatcttgac cagccattta
     1501 ggccggcctg acggtaaggt agtggctaaa tacagcctta aaccggtggc ccagagatta
     1561 aaagagctcc tggggcaaga ggtaaaaatg cttactgact gcgtgggtga aacagtcaag
     1621 aaggatattg agagcgccaa agaaaccctg attttgttgg agaattcgcg ctttcatccc
     1681 gaagaggaaa agaatgatcc ggagttctcc cgagccttgg ccggcctggc tgaggtcttt
     1741 gtgaatgatg cctttggcag tgcccatcgg gcgcacggct caaccgaggg ggtaacccat
     1801 tatctcaaat cagcttccgg gttactctta gaaaaagaaa tcaattactt aggcggcgcg
     1861 ttagaaaaac ccaagaaacc ttttgtagtg atattgggcg gggccaaggt ttcggataaa
     1921 attacggtga ttgaaaatct cctgcccaag gccgatgaga ttattatcgg cggggggatg
     1981 tgttatacct ttttaaaagc ccaaggacgg caaataggca attcaaagtt agaaaaa
//
LOCUS       DATDUB010000056         2763 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_2375296, whole genome shotgun sequence.
ACCESSION   DATDUB010000056 DATDUB010000000
VERSION     DATDUB010000056.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2763)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2763)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2763
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2375296"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..575)
                     /locus_tag="VJA84_01105"
     CDS             complement(<1..575)
                     /locus_tag="VJA84_01105"
                     /inference="COORDINATES: protein motif:HMM:NF014234.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004665 - prephenate dehydrogenase (NADP+)
                     activity [Evidence IEA];
                     GO_function: GO:0008977 - prephenate dehydrogenase (NAD+)
                     activity [Evidence IEA];
                     GO_function: GO:0070403 - NAD+ binding [Evidence IEA];
                     GO_process: GO:0006571 - tyrosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydrogenase/arogenate dehydrogenase
                     family protein"
                     /protein_id="HLD40757.1"
                     /translation="MRLFKNVAIVGVGLIGGSIGLAIKKKGLADKVIGIGRRRESLNE
                     ALAVVAVDQAYLGLENIKGADLVVLAAPVREIIKIIPQLPGLISKDCVVIDAGSTKSE
                     ILKTAQRYKLNFIGAHPLAGMEKKGPKYARAGLFENSWCLLVPAKTAKAAALEKIEKL
                     WVKTGARIKIISARDHDRILAYTSHLPHLVV"
     gene            complement(608..1624)
                     /gene="aroF"
                     /locus_tag="VJA84_01110"
     CDS             complement(608..1624)
                     /gene="aroF"
                     /locus_tag="VJA84_01110"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013120466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003849 - 3-deoxy-7-phosphoheptulonate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase"
                     /protein_id="HLD40758.1"
                     /translation="MIIVLKPEISDKEIEHIIERVTKLGLKPMLSKGTERSIIGVIGP
                     EDILRSTPLEAFPGVERVMPVLAPYKLVSREFRKEDSLIDLGKVVRIGGKELVIIAGP
                     CAVENYSSLYETAKAVKQAGAKALRGGAFKPRTSPYTFQGLGEEGLKHLKDVSDKLNL
                     PIVTEVMDTRDVELVVRYADVLQVGARNMQNFNLLKEVGLTKKPVILKRGLSATVKEW
                     LMSAEYILAGGNMGVILCERGIRTFEDSTRNTLDISSIPVVKKLSHLPVIVDPSHAAG
                     RRDLVEPLAKAGIAAGCDGLIIEVHINPEEALSDGAQSLNPAGFEKIIAPLKAVAQAV
                     GRRV"
     gene            complement(1621..1803)
                     /locus_tag="VJA84_01115"
     CDS             complement(1621..1803)
                     /locus_tag="VJA84_01115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40759.1"
                     /translation="MIDLKEDGLKVSREFLKKGVIVRDMRQYGLNNFIRVTMGLKKEN
                     EKFIKELKKIILAGGK"
     gene            complement(1831..2715)
                     /gene="hisC"
                     /locus_tag="VJA84_01120"
     CDS             complement(1831..2715)
                     /gene="hisC"
                     /locus_tag="VJA84_01120"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR01141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004400 - histidinol-phosphate
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HLD40760.1"
                     /translation="MKVNTDILDVTPYQPGKPIEEVKREMGLKEVIKLASNENPLGPS
                     PKAVSAIRKALSKINRYPEGSCFYLRQALSKKLKVKPANLIFGNGSDEIIDIIIKTFS
                     SPGDQILTSEATFLEYKIIARQNGRGVRTVPLRDFRYDLAALKAGVTPKTRIIFIANP
                     NNPTGTYVNTQEVAGLLSGLPENIVVVFDEAYLEFVEKKDFPRILDYARNKKNVIVLR
                     TFSKIYGLAGLRIGYAIANEECISYLERARQPFNVNMPAQEAARAALSDTDFVQKTKR
                     LVSEGKRYLEKELKGLGL"
BASE COUNT          668 a          790 c          584 g          721 t
ORIGIN      
        1 aaaaccacaa gatggggcag gtggctggta taggccagga tacggtcgtg gtcccgggca
       61 gagattatct ttatcctggc gccggtttta acccagagtt tttctatctt ttccaaagcc
      121 gccgctttcg cggttttcgc cggcacaagc agacaccagg aattctcaaa cagcccggcc
      181 ctggcatatt tggggccttt tttctccata ccagccaaag ggtgagcgcc gataaaattg
      241 agtttgtatc tctgggcggt cttcaggatt tcagacttgg ttgagccggc atcaatgaca
      301 acgcagtctt tactaatcaa tcccggcaat tgagggatga ttttaatgat ttcgcggacc
      361 ggcgcggcca ggaccaccaa atccgcgccc ttgatatttt ccagccctaa ataggcctga
      421 tcaacagcca caaccgctaa tgcctcatta agggattcac ggcggcggcc aatgccgatg
      481 accttatcgg ctaacccctt tttctttatg gccagcccga tagagccgcc aatcaaacca
      541 actcccacaa tcgctacatt tttaaacaat ctcatcacaa cccccaaact cctcaactcc
      601 taaactctta aactctccta cctactgcct gggctacggc tttaagggga gcaattatct
      661 tttcaaagcc tgccggattc aaagactggg ccccgtcgga aagggcctct tcgggattga
      721 tatgcacctc aataatcagg ccgtcgcatc cggcggcaat cccggccttg gccaaaggct
      781 caaccagatc ccgtctgccc gcggcatgag aggggtcaac aattaccgga agatggctta
      841 acttcttgac taccggtatg gagctgatat ccagggtatt gcgggtagag tcttcaaagg
      901 tgcgtatccc gcgctcgcag aggatgaccc ccatattccc cccggccagg atgtattccg
      961 cggacatcag ccattcctta accgtagccg aaaggccgcg tttcaagatg accggcttct
     1021 tggtcaatcc cacttctttg agcaggttga aattctgcat attcctggcc cccacctgca
     1081 ggacatcggc atagcgcacc accaattcca catcccgggt atccattacc tcggtaacta
     1141 tcggcagatt gagtttatcg ctgacatcct taaggtgttt gagcccttcc tcgcctaagc
     1201 cctggaaggt atacggagaa gtccggggtt taaatgcccc gccccttaag gccttggccc
     1261 cggcctgttt taccgccttg gcggtttcat aaaggctgga gtaattttcc accgcgcaag
     1321 gcccggcgat aatcactaat tccttccccc caatccggac cactttaccc aaatcaatca
     1381 gcgaatcctc tttgcggaac tcccgggaga ccaatttata aggggccaag accggcatca
     1441 ccctttctac ccccggaaag gcctccagag gggttgaacg caggatgtcc tccggcccga
     1501 ttaccccgat aatactgcgc tccgtgcctt tagagagcat cggtttaagc cctaacttag
     1561 ttacccgttc aattatatgc tcaatctctt tatcgcttat ttccggtttt aagacaatta
     1621 tcattttccc cccgctaaga ttattttctt caattcctta atgaatttct cattctcttt
     1681 tttcaatccc atggttaccc ggataaaatt attaagcccg tattgacgca tatcccggac
     1741 aatcacgccc tttttaagaa actcccggga aacctttaaa ccatcttctt tcaagtcaat
     1801 caaaatgaaa tttgccgctg aagggataaa tcataacccc aggcccttta attccttctc
     1861 taaatacctc ttgccttcgc tcaccaatct ctttgtcttc tgaacaaaat ccgtatcact
     1921 caaggccgcc cttgccgctt cctgggccgg catattcaca ttaaatggct ggcgggcccg
     1981 ttccagatat gagatacatt cttcattcgc tatcgcatag ccgatacgca gtccggccag
     2041 accgtaaatc ttggaaaagg tgcgcaggac aatcacattc tttttgtttc tggcgtaatc
     2101 aaggatccgg ggaaaatcct ttttctccac aaactccaga taagcctcat caaagaccac
     2161 cactatattt tcaggcaaac cggaaagaag tcccgccacc tcttgtgtgt tgacataagt
     2221 cccggtagga ttgttaggat tggcaataaa aataatcctg gtcttagggg tgaccccggc
     2281 cttgagcgcg gccagatcat atctgaaatc cctcaaagga acagttctta ctccgcgccc
     2341 gttctgccgg gcaattatct tgtattccag gaaggttgcc tctgaagtca gtatctgatc
     2401 tccgggtgaa ctgaaggtct tgataatgat atcaatgatc tcatccgagc cattgccgaa
     2461 gataaggtta gccggcttca ctttcagctt tttgcttaag gcctggcgca gataaaaaca
     2521 agagccttcg ggatagcggt tgattttaga taaagccttc cttatcgccg agactgcctt
     2581 agggctgggg cccagagggt tctcattaga ggccagcttg atcacctctt ttaagcccat
     2641 ctcccgcttc acctcctcaa tcggcttacc cggctgataa ggagtgacat ctaaaatatc
     2701 agtattaacc ttcatcttcg cgcctgccga cacttttcaa acctcaaaat ccttcatctt
     2761 atc
//
LOCUS       DATDUB010000057         2112 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_2043056, whole genome shotgun sequence.
ACCESSION   DATDUB010000057 DATDUB010000000
VERSION     DATDUB010000057.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2112)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2112)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2112
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2043056"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..315
                     /locus_tag="VJA84_01125"
     CDS             <1..315
                     /locus_tag="VJA84_01125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40761.1"
                     /translation="LAKSRYLRRNDMVETYYIRMGQIENYGRRYITHFPRIMWSIFAN
                     TVKMPLHIFSEYKYDHNDKYRQRIDALDAQRLSKEDQKINRIKEELKDYLVKDLEKES
                     SL"
     gene            318..1301
                     /gene="tilS"
                     /locus_tag="VJA84_01130"
     CDS             318..1301
                     /gene="tilS"
                     /locus_tag="VJA84_01130"
                     /EC_number="6.3.4.19"
                     /inference="COORDINATES: protein motif:HMM:TIGR02432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016879 - ligase activity, forming
                     carbon-nitrogen bonds [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA lysidine(34) synthetase TilS"
                     /protein_id="HLD40762.1"
                     /translation="MLTRKVLQAVKEYGLIREFDRIVLGVSGGPDSIALLYCLLALKE
                     EYRLTLHIAHLNHMLRPKDSLKDAEFVRLLAKKLGLACAIKKVNVRGLKKGSLEEAAR
                     KARLDFFLDTAKRIKADKIALGHTLDDQAETVLMRLLRGSGLLGLSGILPKRDILGFT
                     VIRPLLGIKRKEIENFLKAKRIIPRVDASNLDQAYFRNRIRHKLLPGLEKYNPNIKEV
                     LAGSAQNLALDYDYLCSSSLKIFKRLAKGTAHQRISFPLDKFLKLHPAIGNMLLRYAY
                     AWLKGDTRRLTYRHIRELNDLLLNRPEGSIVDLPSGISFSKRSKYLIGFLR"
     gene            1361..>2112
                     /locus_tag="VJA84_01135"
     CDS             1361..>2112
                     /locus_tag="VJA84_01135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013506914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HLD40763.1"
                     /translation="MNEKLPKLNQKMKKINPKQRSNIMWFLLIMGIFYLLNFVNVTLP
                     MKEIKYGDFYRMVKENPSTGNIIYVAKIDGRLEGQLNDKTRFLVLIPDDDKDLLALLR
                     ENVAHFEIKTQPLLLSLLFSLGPVLLLIFFWWMMAARGEQLGNRIMGFGKIRMKSAEE
                     NKNLKITFNDVAGVDEAKEELQEVIEFLKDPKKFQRLGGKIPKGVLLVGPPGCGKTLL
                     AKAVAGEAVVPFFSISGSDFVEMFVGVGASRVR"
BASE COUNT          587 a          471 c          514 g          540 t
ORIGIN      
        1 ctggctaaaa gcagatatct aagaagaaac gatatggtgg aaacctatta tatccggatg
       61 ggccagattg aaaattacgg gcgcaggtat attacccatt tccccagaat aatgtggagt
      121 atctttgcca ataccgttaa aatgcccttg catattttct cggaatacaa atacgaccat
      181 aacgataaat accgccaaag aattgacgcc ttagacgccc aaaggctctc caaagaagac
      241 cagaagataa accggattaa agaagagttg aaagactatc ttgttaaaga cctggagaag
      301 gaatcttctc tataagaatg ctcacccgta aagttcttca ggcggtaaaa gaatacggcc
      361 ttatccgcga gtttgaccgg attgtcctgg gtgtttccgg cggcccggac tcaatcgccc
      421 ttctctactg cctgcttgcc ttaaaagaag aataccggct taccctgcac atcgcccatc
      481 ttaatcatat gctaaggccc aaggattccc ttaaagacgc cgagtttgtc cggctcttgg
      541 ccaagaaact gggcctggcc tgcgcaatta agaaagttaa cgtaagagga cttaaaaaag
      601 gttctctgga agaagccgcc cgtaaggcgc gtttggattt ttttcttgat acggctaaaa
      661 gaattaaggc ggataagatc gcccttggac ataccctgga tgaccaggct gaaacggtat
      721 tgatgcgtct tttgcggggc agcgggcttt tggggctttc gggaatattg cctaaaaggg
      781 atatcctggg tttcacggtt atccggcctt tgctggggat aaaaaggaag gaaatagaaa
      841 atttcttgaa ggcaaaaagg ataatcccgc gcgtagacgc cagcaatctt gatcaggcgt
      901 attttagaaa ccgtatccgc cacaaactcc tccccggact ggaaaaatat aacccgaaca
      961 tcaaagaggt tttagccggt tcagcgcaaa atctcgccct ggattatgat tatctctgct
     1021 cctcaagcct aaaaatattt aaacggctgg ccaaaggaac tgctcatcaa aggataagct
     1081 ttcctttgga taaattctta aagcttcatc cggcaatcgg gaatatgctc ttgcggtatg
     1141 cctatgcctg gctcaaaggt gatacccgca ggctgaccta ccggcatatc cgggaactaa
     1201 atgacctgct cttaaaccgc cctgaaggct caatcgttga cctgccttca ggaatttctt
     1261 tcagcaaaag atcgaaatat cttatcggat tcctccgata gtccttgctt ttatccgggt
     1321 ttggccttat aatttttgtc tacagaaagg aaagatagaa atgaatgaaa aactgcctaa
     1381 actcaatcag aagatgaaaa aaataaatcc caaacagcgc tccaatataa tgtggttcct
     1441 gctgattatg gggatatttt atctgcttaa ttttgtcaat gtgaccctgc cgatgaagga
     1501 gatcaaatac ggcgattttt accggatggt taaggaaaac ccttctaccg gaaatatcat
     1561 ttatgtggcc aagattgacg gacggctgga aggacagtta aacgacaaga ccaggttcct
     1621 ggtgcttatt cccgacgacg ataaggacct cttggcctta ttaagggaga atgtcgcgca
     1681 ctttgagatc aagacccagc cgctgttgct ctcgctttta ttctctttag gcccggtttt
     1741 attgcttatc tttttctggt ggatgatggc cgcccgcggc gaacaattag gcaaccggat
     1801 tatgggtttc ggcaagatcc ggatgaagtc cgcggaagag aataaaaatc taaagattac
     1861 ctttaacgat gtggccgggg tggatgaggc caaggaagag ctccaggagg taattgaatt
     1921 cttgaaggac cctaaaaaat tccagcgcct gggaggcaag attcctaagg gggttttatt
     1981 ggtcggccct cctggctgcg gaaaaaccct gctggccaag gcggtagccg gtgaggccgt
     2041 ggtgcctttt ttctccatta gcggctcgga tttcgtggag atgtttgtgg gcgtgggggc
     2101 ttcccgggtc cg
//
LOCUS       DATDUB010000058         4301 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_697768, whole genome shotgun sequence.
ACCESSION   DATDUB010000058 DATDUB010000000
VERSION     DATDUB010000058.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 4301)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4301)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4301
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_697768"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..388
                     /locus_tag="VJA84_01140"
     CDS             <1..388
                     /locus_tag="VJA84_01140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020876553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="YraN family protein"
                     /protein_id="HLD40764.1"
                     /translation="SMSRYNLNFGRASEDAAAVFLKNKGYKILRTNYRVKFGEIDIIA
                     EEASVICFIEVKSRVDCSLGHPKEALTPRKQDKISRAALAYLKENRFLDRNARFDVLS
                     IIKGDDDQIDFELIKDAFELSGRYSY"
     gene            406..2097
                     /locus_tag="VJA84_01145"
     CDS             406..2097
                     /locus_tag="VJA84_01145"
                     /EC_number="6.3.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011565449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004329 - formate-tetrahydrofolate ligase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formate--tetrahydrofolate ligase"
                     /protein_id="HLD40765.1"
                     /translation="MTDLEIARKTKPYPIVKIAQSIGIKEKELELYGNYKAKIELSIL
                     KRIKARRLGKYVLVTAITPTPLGEGKTVTTIGLAMALNRIGKKTIACIRQPSLGPVFG
                     IKGGASGGGYSQVIPKEDFNLHFNGDAHAVSLANNLLAAFLDNSFFKKNPLNIKPESI
                     TWRRVLDVSDRFLRNIKIGLGGKDDGIERDTGFDITAASEIMAILALSRDPADLRKRL
                     GRIVVAEDINGKPITAEDLKAAGSMAVLLKDAIKPNLIQTLEHTPVIAHCGPFGNIAH
                     GNSSIIADQIALRLADFTVTEAGFGTDLGAEKFFDIKCRYSGLKPSAVVLVATVRALK
                     MHSGRFNVVAGQPLDPGLISEDLDALNQGLCNLEKQIENVRAFGMPCVVALNRFKTDT
                     DKEVALVRERAKKAGASDCLISEVWAKGGKGALELAKAVVKAADEKNSFKFLYPLDIP
                     IKEKIKDIAVQVYGAGDVQYEPVAEEKISRFTQAGYDKLPICMAKTHLSISHDPNLKG
                     RPQGFVLPIRDIRASVGAGFLYPLCGKMQTMPGLPTHPAGEKIDLDKKGNVVGMH"
     gene            2094..2654
                     /locus_tag="VJA84_01150"
     CDS             2094..2654
                     /locus_tag="VJA84_01150"
                     /inference="COORDINATES: protein motif:HMM:NF016825.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclodeaminase/cyclohydrolase family protein"
                     /protein_id="HLD40766.1"
                     /translation="MSYNNKTLREYLDHLAARTPAPGGGSASALAGALGCALLSMSCN
                     FTLGKDKYKDVEPRIKQALKQSEGLRKRLLALVDLDVRAYYKVFKSRKASPEVYQRNL
                     ILATNVPLEICRLAVSGYNLCPLLVKIANKYLISDVRVGKELLKSCFKSAEFNVIINL
                     PEINDVSFVNQTKRELANLKKIIKGR"
     gene            2822..3730
                     /locus_tag="VJA84_01155"
     CDS             2822..3730
                     /locus_tag="VJA84_01155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015050717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 5,10-methylenetetrahydrofolate
                     dehydrogenase/5,10-methenyltetrahydrofolate
                     cyclohydrolase"
                     /protein_id="HLD40767.1"
                     /translation="MPAKLLEGKPIAQRVKEEIKEEVKGIIAKSGKRPALAAVQIGDN
                     PAAEVYFKSQIKCAGELDIEYRHHKLSQDISQDSFFSFIDSLNKDNSVSAVFSQMPLP
                     KHIDSRLLPKHLCPSKDAEGMHPENLGRLFFGKAKFIPCTAHSVMELLKASGVQLYGK
                     EVVVVGHSEIVGKPLSLLLLEQFATTTVCHIATGERGLTAEHVKRAEVLVVAVGRANL
                     IKGEWVKEGAIVVDVGINRVNDKIIGDVEFEEAAKRASWITPVPGGVGPLTVTMLMRN
                     VVEAAKLQLNANVVNGLKPFTTELSI"
     gene            3727..>4301
                     /locus_tag="VJA84_01160"
     CDS             3727..>4301
                     /locus_tag="VJA84_01160"
                     /EC_number="1.5.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008868914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004489 - methylenetetrahydrofolate
                     reductase (NAD(P)H) activity [Evidence IEA];
                     GO_process: GO:0006555 - methionine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase"
                     /protein_id="HLD40768.1"
                     /translation="MTFKEKIQAGKFLLTSEVGPPKGIDVGHILEDAELARGRVDAIN
                     VTDLQSSVMRLGSLAVSIKLKEKGFEPVFQLTCRDRNRLALQSDILSAASFGIENILA
                     LTGDYPTLGDHPQAKPVFDIESVQLIQVIRQLEKGQDMAGKKLEGDLPKFCVGAVVNP
                     GAEPLEPQIMKMEKKIEAGAEFFQTQAVYDL"
BASE COUNT         1114 a          962 c         1190 g         1035 t
ORIGIN      
        1 tagtatgtcc agatataatc tgaattttgg aagggcttct gaagacgcgg cggcggtttt
       61 cttaaagaat aaaggctata agatacttag gacgaattac cgggttaaat tcggggagat
      121 tgatattatt gccgaggagg cctcggtaat atgctttata gaggtgaaat cccgcgttga
      181 ctgctccttg ggccatccca aagaggcctt gaccccgcgc aaacaggata agatttcccg
      241 cgctgccctg gcctacctga aagaaaatcg ctttttagac cggaatgccc gttttgatgt
      301 cttgtccatc attaaaggcg atgatgatca gattgatttt gagctgataa aggacgcctt
      361 tgagttgagt ggaaggtata gttattagga aaaggagggt aaagagtgac ggatttagag
      421 atcgcccgca agactaagcc gtatccaata gtcaagattg cccagtctat cgggataaaa
      481 gagaaagagc ttgagcttta cggaaattac aaggccaaaa tagagctgtc catattaaaa
      541 aggattaagg cccggcgttt agggaaatat gtcctggtta ccgctatcac ccccacgcct
      601 ttgggagagg gcaagaccgt aaccactatc ggactggcta tggccttaaa ccgtattggc
      661 aagaaaacta tcgcctgtat ccgtcagccc tctctggggc cggtgttcgg gataaaaggc
      721 ggggcctccg gaggcggtta ttcccaggtt atccctaaag aagattttaa cctccatttt
      781 aacggcgatg cccacgcggt aagcttagcc aataatctct tggccgcttt cttagataat
      841 tcctttttca agaagaaccc cctgaatata aaaccggaga gcattacctg gcgcagggtg
      901 ctggatgtct ccgaccgttt cctgcgcaac atcaagatcg gtttaggcgg caaagacgac
      961 gggattgagc gcgataccgg ctttgacatt actgccgcca gcgagattat ggctatcctg
     1021 gccttgagcc gcgaccccgc ggacctgcgt aagagattag gccggatcgt ggtggctgaa
     1081 gacattaatg gcaagcccat aaccgctgaa gatttaaagg ccgccggctc aatggcggtc
     1141 ctcttaaaag acgccataaa gcctaatctt atccagactt tagagcatac cccggtgatt
     1201 gcccattgcg ggccgtttgg caatatcgcc catggaaaca gctctatcat tgccgatcag
     1261 attgccttgc gcttagcgga ttttacggta accgaggctg gtttcggcac ggatttgggg
     1321 gcggagaaat tctttgatat caagtgccgc tattcgggct tgaagcccag cgccgtggtt
     1381 ctggtggcca ctgtccgggc gctaaagatg cactcgggga ggtttaatgt ggttgccggc
     1441 cagcctttag accccggcct gatcagtgag gatttagacg cgcttaatca ggggttgtgt
     1501 aatttagaaa aacagattga gaatgtccgc gctttcggga tgccctgcgt ggtcgcccta
     1561 aatcgcttta agactgatac ggataaagag gttgccttag ttcgtgagag ggcaaagaag
     1621 gccggggcca gcgattgtct gatcagcgag gtctgggcca aaggcggaaa aggcgccctg
     1681 gagttggcta aggcagtagt taaggccgcg gatgagaaaa acagttttaa gtttttatat
     1741 cctttagata ttcccattaa ggaaaaaatt aaggatatcg cggtccaggt ttacggggca
     1801 ggcgatgtcc agtatgagcc tgtggctgaa gagaaaatat ccagatttac tcaagccggt
     1861 tatgataagc ttcctatatg tatggccaag acccatctct ctatttctca cgacccaaat
     1921 ctaaagggaa ggcctcaagg gtttgtcctg ccaatccggg atatccgggc ttcagtgggc
     1981 gcgggttttc tctatccttt gtgcggcaag atgcagacta tgcccggcct gcctacgcat
     2041 ccggcggggg agaagattga tctggataag aagggcaatg tagtggggat gcattgagtt
     2101 ataataataa aacactaaga gaataccttg accacctggc cgccaggact cctgctccgg
     2161 gcggtggttc ggcttcggcc ctcgccgggg cgctgggatg cgccttgtta agcatgagct
     2221 gtaacttcac cctgggcaag gataaatata aggatgtgga acccaggata aaacaggccc
     2281 tcaagcagtc tgaaggctta agaaaaaggc ttttagccct ggtggacctg gatgtccggg
     2341 cctattataa ggtgtttaaa agccgcaagg ccagtcccga agtctatcag cgtaatttga
     2401 ttttggccac taatgtccct ttggagatct gccgcctggc tgtgtccgga tataatcttt
     2461 gccctttatt ggttaagatt gccaacaagt atttgatcag cgatgtccgg gtgggaaaag
     2521 aattattaaa atcttgcttt aaatccgcgg agtttaatgt tataattaat ttgcctgaaa
     2581 tcaatgatgt cagttttgta aatcaaacca aaagagaact cgccaattta aaaaaaataa
     2641 tcaagggtcg ataggcaata gtcgatggct ttggctatgg ctgcggctat cggaagccgc
     2701 accatagccc tctggcttat aggaagccaa accatggcct ggcggcctat ggtcaatagt
     2761 cagtaaacta taggctatca gctatagact atagaccctt aatttttgac tttttataaa
     2821 gatgccggca aaacttttag aaggaaaacc catagcccaa agggttaaag aagaaatcaa
     2881 agaggaagta aagggcataa tcgccaaatc cggcaaaagg ccggcgctgg ccgcggtgca
     2941 gataggggat aacccggcgg cagaggttta ttttaagtcc cagataaaat gcgccgggga
     3001 actggatatt gaataccgcc accacaagct ctcccaggac atctcccaag acagtttctt
     3061 ctccttcata gactcactta acaaagacaa ttcggtttcc gctgttttta gccagatgcc
     3121 tctgcctaag catattgaca gccgtctcct gcctaaacat ctttgcccgt ctaaggacgc
     3181 tgaaggcatg catccggaga acctgggccg gctttttttc ggcaaggcca agttcatccc
     3241 ttgcactgcc cacagcgtaa tggaattatt aaaggcctcc ggggtccagc tgtatggcaa
     3301 ggaagttgtg gtggtcgggc acagcgagat tgtgggcaag cctttaagcc ttctgctctt
     3361 ggaacaattt gccaccacta ccgtctgcca tattgctacc ggagagcggg gactaactgc
     3421 cgagcatgtg aagagggcgg aggtcctggt agtagcggta ggccgggcga acttgattaa
     3481 aggagagtgg gtcaaggaag gggcgattgt ggtggatgtg gggataaacc gggtcaatga
     3541 caagatcatc ggggatgtgg agtttgagga ggcggctaag cgggcatcct ggattacccc
     3601 ggtgcccgga ggcgtagggc ctttgaccgt aactatgctg atgcgcaatg tggtggaggc
     3661 ggccaaactg cagcttaacg ctaatgtagt gaacggtttg aaaccgttca ctacggagtt
     3721 atcaatatga cctttaaaga gaagattcag gcaggcaaat tcctgctgac cagtgaggtt
     3781 ggccctccaa aggggattga tgtcgggcat atcttagaag acgcggaact ggcgcgcggc
     3841 agggtggacg cgattaatgt tactgacttg cagagttcag tgatgcgttt aggctctttg
     3901 gcagtgagca taaagttaaa agaaaaaggg tttgagccgg tgtttcagct cacctgccgg
     3961 gacagaaacc gcttggcttt acagtcagat atcttgtccg cggccagctt cggcattgag
     4021 aatatcctgg ccttgaccgg agattatcct accttaggcg accatcccca ggccaagccg
     4081 gtatttgaca ttgaatcggt ccagcttatt caggttatcc gccagctgga aaagggccag
     4141 gatatggccg gcaagaaatt agaaggggat ctcccgaaat tctgcgtggg ggcggtggtc
     4201 aatcccgggg ccgagccgct tgagccgcag attatgaaga tggagaaaaa gattgaggca
     4261 ggagcggagt ttttccagac ccaggcagtc tatgacctta a
//
LOCUS       DATDUB010000059         3887 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1710804, whole genome shotgun sequence.
ACCESSION   DATDUB010000059 DATDUB010000000
VERSION     DATDUB010000059.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3887)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3887)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3887
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1710804"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..344)
                     /locus_tag="VJA84_01165"
     CDS             complement(<1..344)
                     /locus_tag="VJA84_01165"
                     /inference="COORDINATES: protein motif:HMM:NF024140.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MCP four helix bundle domain-containing protein"
                     /protein_id="HLD40769.1"
                     /translation="MKILFSHRIIFGFTAMAVLSILVGYFAFVTTKSVQRVSRAIMKE
                     NVSSLKAAEELEIALLSQKGLVGSYFLDGNDLWIKTIEDKKRDFNIWFNKAREVALTD
                     NEKAVLLDISRI"
     gene            complement(347..1021)
                     /locus_tag="VJA84_01170"
     CDS             complement(347..1021)
                     /locus_tag="VJA84_01170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40770.1"
                     /translation="MKFKISKLKIFISTGIFIVAAFYAVNILRENQMLKKIIERLAAD
                     SRVAEVIVTGVKSDQRTKKTYTTIKFLEYNAKLNPLEPKYFTFSGNIIQFQSMVIRFD
                     DFYVKKGHSLKGKSAYLFLKAFLLTDKGAETFDITKINEIPSGYQVEGAKNNFERRLW
                     LRFWEYALNPIQARRAGIKNAQIEAPGTRFIPGMLYTIKIEHDGGLRIDSAPLSPILK
                     NEKVKF"
     gene            complement(1381..1650)
                     /locus_tag="VJA84_01175"
     CDS             complement(1381..1650)
                     /locus_tag="VJA84_01175"
                     /inference="COORDINATES: protein motif:HMM:NF014838.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40771.1"
                     /translation="MEKVFNLIISTPESLVYSGKIVSLVAPSSLGYLGALTNHDNLIS
                     DISRGKITLKEASGSVKVFNSRGKGFLEISQNNAELLLDSPPVLQ"
     gene            complement(1650..3050)
                     /gene="atpD"
                     /locus_tag="VJA84_01180"
     CDS             complement(1650..3050)
                     /gene="atpD"
                     /locus_tag="VJA84_01180"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014062493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000275 - mitochondrial
                     proton-transporting ATP synthase complex, catalytic sector
                     F(1) [Evidence IEA];
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HLD40772.1"
                     /translation="MRYGDVIQIIGPSVDIRFPEREVPKLLDAIKIEYPDRNINLTLE
                     VAQILGNGVVRCIALSSTDGLVRGMKARDLESPITVPVGPQTLGRIFNVLGEPIDNKG
                     DLADANLRNPIHRDSPNFEQQLPISNVFETGLKVIDLLAPFPKGGKIGLLGGAGVGKT
                     VIVMELIRNIAQEHGGVSVFAGVGERTREGNELWMELNYSGVAQKTALVFGQMNEPPG
                     ARLRVGLSALTMAEYFRDQERKDVLLFVDNIYRYIQAGAEVSTLLGRMPSAVGYQPNL
                     ATEVAQLQERIASTRNGSITSVQAIYVPADDLTDPAIVVTFAHLDAKVVLSRQIAELG
                     IYPAVDPLDSTSRILDPKIVGDEHYNVTASVQKILQRYKELRDIISILGIDELSDEDK
                     LIVYRARKIQKFFSQPFFVAENFTGMKGKYVKLKDTIKGFQMLLDGQMDNVPEQAFYM
                     AGTIEDVLEKAEQLKK"
     gene            complement(3145..>3887)
                     /locus_tag="VJA84_01185"
     CDS             complement(3145..>3887)
                     /locus_tag="VJA84_01185"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: protein motif:HMM:NF012456.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0042777 - proton motive force-driven plasma
                     membrane ATP synthesis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FoF1 ATP synthase subunit gamma"
                     /protein_id="HLD40773.1"
                     /translation="LSYTLAKASCADNPFVAAAQFAGRPQGAAPTGRKIALCVISSDT
                     GLCGTYNNNLFRKAEEFIKENSGSKVSLAVIGRKGFNYFRRKGYELPLAYHEPRGNYT
                     GAMLEKILSDLNHMFLSARVSRIYLAYTRFESSSRQKPVIEEFLPLSLPVGDAQCASP
                     TEEYLIEPDAQTVLNELVPVYIANKMRTAILEAKTSEHASRVISMAKATDNAKELLED
                     LILLRNKVRQSGITKEILEIISSAEALK"
BASE COUNT         1027 a          996 c          858 g         1006 t
ORIGIN      
        1 tagattcgcg agatatcaag taaaaccgcc ttttcattgt ccgtaagagc gacttcccgc
       61 gctttattaa accatatatt gaaatccctc tttttatctt caatagtctt gatccataag
      121 tcattgccat ctaagaaata acttccgaca aggcctttct gactcaacaa tgctatctcc
      181 agctcctcgg ctgccttaag gcttgagaca ttctctttca taatcgcgcg cgaaactctt
      241 tgcacggatt tagtggtaac aaacgcgaaa tagccgacca aaatagataa aaccgccata
      301 gcggtaaagc caaaaattat tctatggcta aatagtattt tcatctttaa aacttaacct
      361 tttcgttctt taatatggga gatagaggcg cgctatcaat acgcaggccg ccatcatgct
      421 cgattttaat ggtatacagc atccctggaa taaatcttgt tcccggagcc tcaatttgag
      481 cattttttat gcctgctcgc cttgcctgaa taggattaag cgcgtattcc caaaatctca
      541 accaaagcct gcgctcaaaa ttatttttcg cgccttcaac ctgataaccg gaaggaattt
      601 cattaatttt agtaatatcg aatgtttcgg ctcctttatc ggtcaggagg aatgccttca
      661 aaaatagata cgcgctcttt ccctttaacg aatgcccttt tttaacatag aaatcatcaa
      721 aacggatgac cattgattga aactggataa tattccccga aaaggtgaaa tattttggct
      781 caagaggatt aagtttcgcg ttgtattcca ggaatttaat ggtggtataa gtctttttcg
      841 ttctttgatc agatttaacc ccggttacta ttacttcggc aactctcgaa tcagcggcta
      901 agcgttcaat tatttttttg agcatttgat tttctctaag aatattaacg gcataaaacg
      961 cagcaactat aaaaataccg gtagagataa aaatttttag tttcgatatt ttaaatttca
     1021 tgcgctaaaa ctgtaattga aacgcacata ataaaaaacc gccatctgat ataatatcag
     1081 atggcggccc gaccatctca atcacctctg gaaacacaat taaatagctg acatttccaa
     1141 accctctata atttatattc tgttctttat tatatgtgtt ttcgcgcata aagcaagagg
     1201 tttttcaaac ggtttgtaat gcgtcagtca atgggggatt tagcgggatt tgtcattgcg
     1261 aggagcgaca gcgacgaagc aatcccgacg gagattgctt cgctcacttc ctgcctgccg
     1321 acaggcaggc attcgctcga aatgacacgc ctctgtttac tgacgcatta cagacaggga
     1381 ttattgcagg acaggcggag agtctaagag cagttcggcg ttattctggg agatttctag
     1441 gaagcctttg ccccgggaat tgaagacctt gactgaaccg gaggcctctt ttaaggtgat
     1501 cttgccgcgg gagatgtcgc tgatcaggtt atcatggttg gtcagcgccc ctaaataacc
     1561 caaagaagaa ggcgcgacca aagacacgat cttccccgaa taaactaagc tctcgggggt
     1621 ggagattatc agattaaaga ccttttccat tattttttca gctgttcggc cttctccaaa
     1681 acatcctcaa tggtgccagc catatagaag gcctgctccg ggacattatc catctggccg
     1741 tctaaaagca tctggaagcc cttgatagtg tcctttagct tgacatattt acccttcatc
     1801 ccggtaaaat tttcggccac aaaaaacggc tgggaaaaga atttttggat cttcctggcc
     1861 cggtagacaa tcagcttgtc ctcgtcggaa agctcatcta tgcccaatat ggagatgata
     1921 tcccgcagtt ccttatatct ctggagtatc ttttggacgc tggcggtcac attgtaatgc
     1981 tcatcaccga caatcttcgg gtccagtatg cgcgaggtgg aatctaacgg atcaaccgcc
     2041 ggataaatcc ccagctcggc gatctggcgg gacaaaacca ccttggcatc cagatgggca
     2101 aaggtcacca cgatggccgg gtcggtcagg tcgtccgccg ggacatatat cgcctgcacc
     2161 gaggtaattg agccgttacg ggtagaggca atcctctcct ggagctgggc aacctcggta
     2221 gccaggttcg gctgatagcc cactgccgaa ggcatacggc caagcagggt ggatacttcc
     2281 gcgccagcct ggatatagcg gtagatgtta tccacgaata aaaggacatc ctttctttcc
     2341 tggtcccgga aatactcggc catagtcagc gcggacaggc ccacccgaag gcgcgccccc
     2401 ggaggctcgt tcatctggcc gaagaccagg gcggtcttct gggccacccc ggaataattc
     2461 agttccatcc agagctcatt gccttccctg gtcctctcgc ccaccccggc aaacaccgaa
     2521 accccgccgt gctcctgggc aatgttgcgg ataagctcca taacgattac ggtcttgccc
     2581 accccggccc ctcccaacag accgatctta ccgcctttgg gaaacggggc caaaaggtca
     2641 atgaccttta acccggtctc aaagacattg gaaatgggca gctgctgttc aaaattcgga
     2701 gaatcccggt gaataggatt acgcaaattg gcatccgcca gatcgccctt attgtcaatc
     2761 ggctcaccca gcacattgaa tatccggccc agggtctggg ggcctaccgg cacggtaatg
     2821 ggagactcca aatccctggc cttcatcccc cggaccaggc cgtcagtaga agacaaggct
     2881 atacagcgga ccaccccgtt acctaaaatc tgggccacct ctaaagtaag attaatattt
     2941 ctatccggat attcaatctt aatggcatcc aaaagcttgg gcacctcccg ctccgggaaa
     3001 cggatatcca cgctgggccc gataatctga atcacatcac cgtatcgcat atcgctcctt
     3061 ttagaaatca attaaaatta cgggtcaata gtctatagtc gatagactat tgactatcga
     3121 ccatagaccc tttaatattt tactttattt aagggcctcg gctgaagaga taatctccag
     3181 gatctccttg gtaatcccgg actggcgcac cttgttacgc agtaatatta aatcctccaa
     3241 tagctccttg gcattatccg tggccttggc catagaaatc acccgggagg catgctccga
     3301 ggtcttggcc tccagaatgg cggtcctcat cttattagcg atatacaccg ggacaagctc
     3361 gttcaatacg gtttgggcat ccggctcaat cagatattct tctgtagggg acgcgcactg
     3421 tgcgtcccct acaggcaaag acaaaggcaa aaactcctca atcaccggtt tttgccggga
     3481 tgagctttca aaacgggtgt aggccaggta tatccggctg acccgggcag acaaaaacat
     3541 atggttcaga tccgagagaa tcttttccaa catagccccg gtataattcc cccgcggctc
     3601 atgataggcc aaagggagtt catagccttt tcgccggaaa taattaaatc cttttctccc
     3661 tatcaccgcc aggctgactt tggagccgga attttccttg ataaactcct cggccttgcg
     3721 aaaaaggtta ttattatagg tcccgcacag tccggtatcc gaagagatga cacacaaggc
     3781 aattttcctg cctgtagggg cggccccctg tggccgccct gcaaattgcg cggccgctac
     3841 gaaaggatta tccgcgcaag aggccttggc cagggtatag gataaaa
//
LOCUS       DATDUB010000060         4940 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1711678, whole genome shotgun sequence.
ACCESSION   DATDUB010000060 DATDUB010000000
VERSION     DATDUB010000060.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 4940)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4940)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4940
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1711678"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1021)
                     /gene="hflX"
                     /locus_tag="VJA84_01190"
     CDS             complement(<1..1021)
                     /gene="hflX"
                     /locus_tag="VJA84_01190"
                     /inference="COORDINATES: protein motif:HMM:TIGR03156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HLD40774.1"
                     /translation="MIELNRKEKALLVTVDVFSQRTKGISLEDEANELRELTKTAGLE
                     AAQAEICRVDKPSPNLFIGTGKAWDLSLLVSGHNIDAAIFSTDLSGTQARNLEEKLGC
                     KIIDRTQLILDIFAQHARGPEGKMQVELAQLEYLLPRLTGKGTMLSRMGGGIGARGPG
                     EQKLELDRRIIRSRIGKLKRELAKARAQRDLLRKKRKTEKIPLVSLVGYTNAGKTTLL
                     NSLVNEHQLADDSLFTTLDPLSRILILPNHQKIILSDTVGFLHNLPHHLIEAFKATLE
                     DVREADLLIHVLDVSHPLCYSYYESVNQALLELECQGKNIITALNKIDKIEDQNWIER
                     YKQDFP"
     gene            complement(1018..1956)
                     /gene="miaA"
                     /locus_tag="VJA84_01195"
     CDS             complement(1018..1956)
                     /gene="miaA"
                     /locus_tag="VJA84_01195"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: protein motif:HMM:TIGR00174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0052381 - tRNA dimethylallyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HLD40775.1"
                     /translation="MPQNKPQILFLIGPTAIGKSRLAVQLAAKINAEIISLDSMQIYL
                     GLEILSSQPSRQMQKKVRHHLLNIVNPNQEFDAAEYRKLALKKIKEIQAAGKIPLFAG
                     GTGLYLSIVIDGIFKDVKKDEALREKLYAQAAKKGSVFLHNKLKKIDHAAAAKIHPND
                     AKRIIRALEVYKRTGKPISRLWKTRKGLDTSKYDIKVFGLNKEREGLYRDINQRVEDM
                     FSQGLVNEVKSVLARNPGLTGRQAFRTSRQAIGIREIQGYLAGQYDLERAKEMIKKNT
                     RNYAKRQLTWFRKDKRIIWLEASQKNLPGQIVKLIK"
     gene            complement(1956..2699)
                     /locus_tag="VJA84_01200"
     CDS             complement(1956..2699)
                     /locus_tag="VJA84_01200"
                     /inference="COORDINATES: protein motif:HMM:NF021492.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SPOR domain-containing protein"
                     /protein_id="HLD40776.1"
                     /translation="MKAVKFIILGVCALAAAPLFADSLSRAEAFYLQGSYSDSIEECG
                     LKIAQDKEADKAYYLLGLNYLKLNDPEKAREKLNTLIDKYGSSPYLNSARLSYADSFF
                     LEQDYLRAKTHYENILKNNPAQGPSAYLGLARCALKTGDWQKAKDYAQAIQQKFPQSL
                     EARTAKDLFSGGDFFFTVQVGSFANQKNAQRLTQKLINAQFEAYIDQINSGTTLLYRV
                     RVGKLDSRPEAEKLKNNLEQKGYPARIYP"
     gene            complement(2832..4055)
                     /gene="miaB"
                     /locus_tag="VJA84_01205"
     CDS             complement(2832..4055)
                     /gene="miaB"
                     /locus_tag="VJA84_01205"
                     /EC_number="2.8.4.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR00089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016782 - transferase activity,
                     transferring sulphur-containing groups [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (N6-isopentenyl
                     adenosine(37)-C2)-methylthiotransferase MiaB"
                     /protein_id="HLD40777.1"
                     /translation="MTSQVRPPSVRGKASNPWRREENLYPAAARTWQPKVFIKTFGCQ
                     MNLRDSEVITGLLLESGFEVLDNLEREAEAVLLVTCSVRQHAEDKVWSEIGRLAKLAP
                     KPVIGLVGCMAENYKDAAFKRMPGIDLVVGTNNIGEIPGLLKDIFRERRETKDERRLL
                     AVNKIKRDEFVYEPAFRQEKDRCFVVISEGCDNFCSYCVVPYVRGRLRHRQPGNILKE
                     VESCVEKGIKSITLLGQNVNAYSYKDVDFIKLLELVNPIKGLKEFAFVTSHPRDASRR
                     LFEAMAGLDKLKKSLHLPFQSGSNRILELMKRGYTREHYLHLAGEYRKIVPEGALTTD
                     IIVGFPGETEVDFRQTLLLIEEARFNSAYIFKYSPRGPAAASKLKDDVPKQEKERRHK
                     ILLETQKGISKELKV"
     gene            complement(4108..4419)
                     /locus_tag="VJA84_01210"
     CDS             complement(4108..4419)
                     /locus_tag="VJA84_01210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012861058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GIY-YIG nuclease family protein"
                     /protein_id="HLD40778.1"
                     /translation="MREKFRREGKFYVYMVECADGTYYTGYTNDLKVRLKRHNDGLAS
                     KYTRARLPVTLVWKKEYRQFKSAFKTELVIKNLTRMQKEALVRGKRLDKVLSDAGVKR
                     K"
     gene            complement(4403..4642)
                     /locus_tag="VJA84_01215"
     CDS             complement(4403..4642)
                     /locus_tag="VJA84_01215"
                     /inference="COORDINATES: protein motif:HMM:NF012464.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000150 - DNA strand exchange activity
                     [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HLD40779.1"
                     /translation="MKAAIYIRVSTEDQAKEGYSLEVQREYLESFAKREGLEIFKVYQ
                     DDGISGYSAERPALKKLFNSAKREDLSCFYNARKI"
     gene            complement(4639..>4940)
                     /locus_tag="VJA84_01220"
     CDS             complement(4639..>4940)
                     /locus_tag="VJA84_01220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40780.1"
                     /translation="SGMYLVAQFERVKDCQSKINEQWLKNVERPLQDFLLKEGAHSID
                     NIVWLNKEDKEKLITIDHKKEEAVKDVKDSTVAKLKRMSFDENMINGAMNKVLGK"
BASE COUNT         1154 a         1266 c         1050 g         1470 t
ORIGIN      
        1 caggaaaatc ctgtttgtag cgttctatcc agttttggtc ttctatcttg tcaatcttat
       61 ttaaggcggt gatgatattt ttaccctgac actccaattc taaaagcgcc tggtttacgg
      121 attcataata actgtaacat aagggatgcg aaacatccaa gacatggatt aacaggtctg
      181 cctcgcgcac atcctccaag gtggccttaa aggcctcaat gagatggtgg ggcaggttgt
      241 gcaggaaacc taccgtatcc gagaggatga ttttctggtg gttgggcagg ataaggatgc
      301 gggaaagcgg gtccaaggtg gtaaagaggc tgtcatcggc taattgatgt tcattgacta
      361 aggaattaag taatgtggtc tttccggcat tagtatagcc gaccagagat accaagggga
      421 ttttttctgt tttccttttt ttgcgcagca aatccctctg ggcgcgggcc ttagccaatt
      481 ccctttttaa tttgccaatc cggctgcgga ttattctgcg gtcaagctct aatttttgct
      541 ccccaggccc ccgggcgccg atgccgcctc ccattcggga aagcattgtc ccttttccgg
      601 ttaagcgcgg cagtaaatac tccaactggg ccagctcaac ctgcatcttc ccttcagggc
      661 ccctggcatg ctgggcaaag atgtctaaga taagctgggt gcggtcaatg attttacagc
      721 ctaatttctc ctctaagttc ctggcctggg tgccgctcaa gtcggttgag aatattgccg
      781 cgtcaatatt atgcccgctt accaagaggc ttaaatccca ggccttgcct gtgccgataa
      841 acaggtttgg gctgggcttg tccacccggc aaatctccgc ttgcgcggcc tccagcccag
      901 cggtcttggt caattccctt aattcattgg cctcatcctc gagggaaata ccttttgtcc
      961 tttggctaaa gacatccacc gttaccaata aagccttttc cttgcggtta agttcaatca
     1021 tttgattaat tttactattt ggccgggcaa attcttttgt gaggcctcaa gccagataat
     1081 ccttttatcc ttacgaaacc aggtaagctg gcgcttggcg taattgcggg tattcttttt
     1141 gatcatttcc ttggcgcgtt ctaaatcgta ttggccggca agataaccct ggatttctct
     1201 gatcccgatt gcctgcctgc tcgtccggaa ggcctgcctg ccggtcaggc cgggattccg
     1261 ggctaagacg ctctttacct cattaaccaa gccttggctg aacatatctt ccacccgttg
     1321 attaatatcc cggtaaagcc cttcccgctc tttattcaat ccgaatacct tgatgtcgta
     1381 tttgctggta tccaagcctt tacgggtctt ccaaagccgg gaaataggct ttccggtccg
     1441 tttataaacc tccagggccc ggattatcct tttggcatca ttgggatgaa tcttagcggc
     1501 ggcagcatgg tctatcttct ttagcttatt atgcagaaag acactgcctt tttttgcggc
     1561 ctgggcatag agtttttcgc gcaaggcctc gtctttttta acatccttaa atataccgtc
     1621 aattacgata cttagataca atccggtccc tcccgcgaag agcgggattt tacctgccgc
     1681 ctggatttct tttattttct tcagggctaa cttgcgatat tcagccgcgt caaattcctg
     1741 attcggatta actatattca acagatgatg cctgaccttt ttttgcatct gccttgaagg
     1801 ctgggaactc aagatctcca ggcccagata gatttgcatg gaatccaggg agatgatctc
     1861 ggcattgatt ttagcggcta attggacggc aagacggctt tttcctatcg cggtggggcc
     1921 gattaaaaag aggatttggg gtttattttg gggcatcaag gatagatcct ggcgggataa
     1981 cccttctgct ctaaattatt ctttagcttc tccgcttccg ggcggctgtc taattttccc
     2041 acccgcaccc ggtaaagcag ggttgtgccg gagtttatct ggtcaatata ggcctcaaat
     2101 tgggcgttga ttagtttctg ggttagccgc tgggcattct tttggttggc aaacgaaccc
     2161 acctggaccg taaagaaaaa atctcccccg ctgaataaat ccttagctgt ccgcgcctct
     2221 aagctctggg ggaatttttg ctggatagct tgagcgtaat ctttggcctt ctgccagtcc
     2281 ccggttttta aggcacagcg ggccagcccc agatacgcgc ttgggccttg agccgggtta
     2341 ttctttagaa tattttcata atgtgtttta gccctaagat aatcctgctc taaaaaaaag
     2401 ctgtcggcat aagagagcct ggctgaattt aagtagggac ttgagccata cttatcaatc
     2461 agggtgttta gcttctcccg ggccttttcc gggtcattaa gcttaaggta atttaacccc
     2521 agcagataat aggccttgtc cgcttcttta tcctgggcaa tctttagccc gcactcctca
     2581 atgctgtcgc tgtaacttcc ctgcagataa aacgcctcgg cccggctaag gctgtcggcg
     2641 aataatgggg cagccgctaa ggcgcagaca cccaagataa taaattttac tgccttcatt
     2701 tctttacctt taggtaaggg gtcagtaagc aagggaatta atttctttgt cattcccgcg
     2761 aaagcgggaa tccagacgat atggattccc cggtcaagcc ggggaatgac aaaatgtccc
     2821 catctaaccg gttacacctt tagctccttg gatatccctt tctgggtttc taagagaatc
     2881 ttgtgccgcc tttctttttc ttgtttgggg acatcgtctt ttaacttgct ggccgcggca
     2941 gggccgcggg gtgaatattt aaatatatag gcgctgttaa aacgcgcctc ttctatcaag
     3001 agcaatgtct ggcggaagtc aacttcagtc tctccgggaa agccgacaat gatatccgtg
     3061 gtaagggcgc cttcagggac tattttacga tattccccgg ccaaatgcaa ataatgttcg
     3121 cgggtatatc cccttttcat caattccagg atccggttag acccggactg aaaaggcagg
     3181 tgcagtgatt tttttagttt atccaggccg gccatcgcct caaataatct cctggaggcg
     3241 tcccgggggt gcgaagtaac aaaagcaaac tccttaagcc ctttaatcgg attcaccaat
     3301 tcaaggagtt taataaaatc aacatcctta taagaatacg cgttcacatt ctggcctaag
     3361 agggtaattg acttaatccc tttttcaacg caactttcaa cttccttgag gatattcccg
     3421 ggctgacgat ggcgcaggcg tccccgcaca taggggacta cgcaataaga gcagaaatta
     3481 tcgcatcctt cggaaatcac cacaaaacac ctgtcttttt cctggcgaaa ggcaggctca
     3541 tacacaaact catcgcgctt tattttgttt acagccaaga ggcgtctttc gtccttcgtc
     3601 tctcgtcttt cgcgaaaaat atcttttaac aatcccggaa tttccccgat attattagtc
     3661 cccaccacca aatcaatccc cggcatccgt ttaaatgccg cgtctttata gttttcggcc
     3721 atacagccaa ccagtccgat aaccggctta ggcgcgagtt tagccagcct gccgatttcc
     3781 gaccagacct tatcctcggc gtgctgacgc accgaacagg taaccaataa aaccgcctcg
     3841 gcctcacgct caaggttatc caatacctca aacccgctct ccaaaagcag tcccgtaatc
     3901 acttcagaat ctctaagatt catttggcag ccgaaggttt ttataaaaac cttcggctgc
     3961 catgtccgag ccgccgcggg gtaaaggttc tcttctcttc gccaagggtt agaagcttta
     4021 ccccgcacgc ttggcggccg gacctgactt gtcatattcg agccgccgcg gggtagccgg
     4081 acattacagt attattctta caatttatca ttttctctta actccagcat ccgacagcac
     4141 cttatcaagc cttttacctc ttactaacgc ctctttttgc atccttgtca ggttcttaat
     4201 cactaactca gttttaaacg ccgatttaaa ttgccggtat tcttttttcc aaaccaatgt
     4261 taccggaagt ctcgccctcg tatattttga agccaatccg tcattatgcc gcttcaggcg
     4321 caccttgagg tcattggtat accccgtata gtaagtcccg tcggcgcact ccaccatata
     4381 cacataaaat ttaccctcgc gcctaaattt ttctcgcatt ataaaaacaa ctcaaatctt
     4441 ctctttttgc gctgttgaaa agttttttca aggcagggcg ctcggcagaa taaccgctta
     4501 taccatcgtc ttgataaacc ttgaatattt caaggccttc tcgcttagca aaagactcaa
     4561 gatattctcg ttggacctca agagaatatc cctctttggc ttgatcttcg gtagaaacac
     4621 gaatatatat tgctgctttc attttcctaa taccttattc atagccccat taatcatatt
     4681 ttcatcaaag ctcattcgtt ttaactttgc cacagtcgaa tcttttacat ctttgacagc
     4741 ttcctctttt ttgtggtcta tcgtgatcaa tttttctttg tcctctttgt tcagccatac
     4801 aatattatct atcgaatgag cgccttcttt taataaaaaa tcctgtagcg gtcgctctac
     4861 attcttaagc cactgttcat ttattttact ctgacaatcc tttactcttt caaattgtgc
     4921 taccaaatac atcccacttt
//
LOCUS       DATDUB010000061         2091 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_871374, whole genome shotgun sequence.
ACCESSION   DATDUB010000061 DATDUB010000000
VERSION     DATDUB010000061.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2091)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2091)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2091
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_871374"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..863)
                     /locus_tag="VJA84_01225"
     CDS             complement(<1..863)
                     /locus_tag="VJA84_01225"
                     /inference="COORDINATES: protein motif:HMM:NF012797.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA methyltransferase"
                     /protein_id="HLD40781.1"
                     /translation="MPTNFISSPKNPRLKEIVRLRDAAYRREKGLFIIEGVREVRLAL
                     ESGFSVREIFICPGYFNPSLRANGVSEAIPTEIASSSRHFVGTPRNDHAGIPLEVAKA
                     RKTKIIELDKKAYEKIAFGERKEGIIAVAVSPRFCLSEVKIKPKAMIMVVAGMEKPGN
                     LGAIARSADASGVCALIAADTKGDIYNPNAIRSSLGAIFSVKTLKESSAKVISWLKAN
                     NIKIISAVVGAGLDYTQVDFNQSLAIVLGSEENGLSRIWRDNSDYQVCLPMTGRVDSL
                     NVSVTAGILLY"
     gene            complement(1007..1906)
                     /locus_tag="VJA84_01230"
     CDS             complement(1007..1906)
                     /locus_tag="VJA84_01230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013565364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PfkB family carbohydrate kinase"
                     /protein_id="HLD40782.1"
                     /translation="MSLVVLGTVALDTVQTPRGKRMNMLGGSAAHFAMAARFFVPVNL
                     VAVVGEDFPQGHIDFLRKKGIVTASLKKESGKTFRWEGEYQGDMNSAFTLNTELGVLS
                     AFRPEVTEEQKKMKYIFLANVDPDIQTKLLDSIHSPRLIALDSMNFWIKHKRNSLIKL
                     LKRVDIFVANDAEAKELSGKHGLFEAASFLRKLGPEMIVIKKGEHGVLFYSDALSFSL
                     PAYPVRKLLDPTGAGDSFAGGFMGYLAKAGVINKKTIKKAIGYGTVIASYNVEGFGLE
                     RTARLSLKEIERRFESYRGSLVL"
BASE COUNT          541 a          572 c          432 g          546 t
ORIGIN      
        1 tcataaagca ggatacccgc ggttaccgaa acattcaaag aatccaccct gccggtcata
       61 ggaaggcaga cctgataatc gctgttatcc ctccatatcc ggctcaaacc attttcctca
      121 ctgcctaaaa ctatagctaa agattgatta aaatcaacct gggtataatc caggcccgct
      181 cccactaccg ctgaaattat ctttatatta ttggccttaa gccaggaaat gaccttagcc
      241 gaagattctt ttagcgtctt gacactgaat atggctccta agctggaacg aatggcatta
      301 ggattataga tatccccttt agtatccgcg gcaatcaggg cgcaaactcc agaggcatca
      361 gcggagcggg ctatcgcccc aaggttcccg ggcttttcca tgcccgctac caccattatc
      421 atggccttgg gttttatctt gacctccgaa aggcaaaaac gcggggacac agcgacggcg
      481 attatccctt ctttcctttc gccaaaggct attttctcat aggccttttt atccaactca
      541 attattttag tttttcgcgc ctttgctacc tcaaggggaa ttcccgcatg gtcattgcga
      601 ggagtcccga cgaaatgtcg ggacgacgaa gcaatctccg ttgggattgc ttcgctcact
      661 ccgttcgctc gcaatgacgg attgaagtat cccggacaaa taaatatctc ccggacacta
      721 aatccggatt ccaacgccag cctaacctcc cgcactccct ctatgataaa aagccccttt
      781 tccctgcgat aagccgcgtc ccttaatcta acaatctcct tgagcctggg attcttcggg
      841 ctggagataa aatttgtcgg cattataaat tcaggatcaa tcttggccgt ggcaggtgtc
      901 ccgcgcgcag ttccgcaggc gccattccat aatgtaatta tccggagaag cgccgaggat
      961 gtttgagcac gggatacctg acgcggacaa gacgcccacg cagatgctac aaaactaaac
     1021 tgccgcggta agactcaaaa cggcgctcta tctctttcag gctaagccgg gctgtcctct
     1081 ccagaccgaa tccttccaca ttataggagg caatcaccgt gccatagccg attgctttct
     1141 ttatggtttt cttattaatt actcccgcct tggctaagta acccataaaa cctccggcaa
     1201 aagaatcccc ggctccagta ggatcaagca gtttccttac cggataggcc ggcagggaaa
     1261 agcttaaggc atccgaataa aataagacgc catgctcacc cttcttaatc acgatcattt
     1321 caggcccgag cttacgcagg aaagaagccg cctcaaacaa tccgtgtttg ccggataact
     1381 ccttagcctc ggcgtcgtta gccacaaaga tgtccactct ttttagaagc ttaatcaggc
     1441 tgtttcgttt atgcttaatc cagaaattca tgctgtctaa ggcaatcaac ctgggagaat
     1501 gtatggaatc caaaagctta gtctggatat ccgggtcaac attggccaaa aagatatatt
     1561 tcatcttctt ctgttcttcg gtaacttccg gacgaaaggc ggaaagcacc ccaagttccg
     1621 tgttcaaggt aaaggcggaa ttcatatctc cctgatattc cccttcccat ctgaatgtct
     1681 tgccagactc tttcttgagc gaggcggtca ctatcccttt ttttctcaag aagtcaatat
     1741 gcccttgagg aaagtcttct cccactactg ccaccaggtt taccgggaca aaaaaccgcg
     1801 cggccatagc gaagtgcgcg gcagagccgc ccagcatatt cattcttttg ccccgcgggg
     1861 tctggaccgt atccaaagcc actgttccca acaccactaa actcattgtt ctcctatatt
     1921 tattaacagt tttgttaacc aaaggttaag ggtctataat caatagtcta tggtctatat
     1981 tttttctatt gactattggc catcgactat cgacccttag ttgttttcca agaaaaccgc
     2041 catatccggc ggcaattcag agtgaaaacg catcagttta ccatcagccg g
//
LOCUS       DATDUB010000062         4443 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_2377372, whole genome shotgun sequence.
ACCESSION   DATDUB010000062 DATDUB010000000
VERSION     DATDUB010000062.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 4443)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4443)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4443
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2377372"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(110..748)
                     /locus_tag="VJA84_01235"
     CDS             complement(110..748)
                     /locus_tag="VJA84_01235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011937496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ORF6N domain-containing protein"
                     /protein_id="HLD40783.1"
                     /translation="MERKKRSIAQLIPQEAITNKILLLRGKKAMLDRDLAKLYGVTTG
                     NLNKAVKRNIERFPEDFMFQLIKDEEESLRFQFGSFKRGQHTKYLSCVFTEQGVAMLS
                     SVLRSKRAIQVNIAIMRVFVRLKEIISTHKELAYKLNELERKIEEHDEEIHSIFEAIR
                     QLMAPPPEEKRHIAGFQPRNFSASLTSGRLSRIGRNDLANVVVTKKKVGREK"
     gene            complement(1074..1337)
                     /locus_tag="VJA84_01240"
     CDS             complement(1074..1337)
                     /locus_tag="VJA84_01240"
                     /inference="COORDINATES: protein motif:HMM:NF015959.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SpoVG family protein"
                     /protein_id="HLD40784.1"
                     /translation="MVNESEIQVARLFRVEKEGSKLKAFVDLAIGGCLIVKGFKVMQG
                     QEGLFVGMPSQPGKDGKWYQVALPATKEKGQEISEIILSAYGE"
     gene            complement(1378..1836)
                     /locus_tag="VJA84_01245"
     CDS             complement(1378..1836)
                     /locus_tag="VJA84_01245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40785.1"
                     /translation="MEKLEKLIKEGLNQDHLDLKKTPACPSELELGKYLDKSASISRR
                     GEIEKHLADCGYCLDLLVTAKAALKDFPKKPDLFQALKQQKWFILSMFSLAASFFIKR
                     YFFQFLTLSLILGLKWSLSAEGSRNLVMIFRSLGHKDPAESEKENIFARK"
     gene            complement(1980..2576)
                     /locus_tag="VJA84_01250"
     CDS             complement(1980..2576)
                     /locus_tag="VJA84_01250"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HLD40786.1"
                     /translation="MLILKELVNRCITKDKSAWSEFVLRFRPLAERCVRFRLSRHNFT
                     CAIEDIKDIVQGIFLDIWEKNKLELVKDQDKISGWLSVVSQNAAISFIRSQAKFSRQR
                     SVCADEEGGVNDILNILPSGTDLSRELAKEDLAEAVDKLIAVLEPREKLILKLNIQHN
                     QTHREIADFLNIPINTVSSILRRTMIGLRENLKKKGYI"
     gene            complement(2548..3591)
                     /locus_tag="VJA84_01255"
     CDS             complement(2548..3591)
                     /locus_tag="VJA84_01255"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014425166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004107 - chorismate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_process: GO:0008652 - amino acid biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HLD40787.1"
                     /translation="MLRYLTAGESHGRALMAILEGLPAGLKVEKEKINLELCRRQEGY
                     GRGARMRIEKDKVEILSGLYKGRSIGSPLGILIENRDFSLEAQPEIFNPRPGHADLAG
                     LLKYGFGDARPVLERASARETAARVALGAVCKIFLSEFNVSIDSKVTAIGGETSEKAM
                     RKIIDQAISRKDSLGGVFELQVKGLPVGLGSYVQPDKRLNARLSHAVMSIPGIKAVEF
                     GLGFECANRFGSQVHDAIYYSKDKGYYRKTNNAGGIEGGISNGQDIVIRGYMKPIATL
                     NKPLSSVDLRSKKAALASIQRADTCAVQAAGVVAEAMCALEIANALLEKFGGDCMRDI
                     RQAFGAYLKRISQ"
     gene            complement(3604..3969)
                     /locus_tag="VJA84_01260"
     CDS             complement(3604..3969)
                     /locus_tag="VJA84_01260"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HLD40788.1"
                     /translation="MAKNILVVDDDGMVTKSLCGLLKKSGYSADASGDGFDAIEKVQD
                     THIDLIVIDLRMPGMDGVQTVKRIKEIIKSRNKADIPVIFITGYADSELYAQAKGLGR
                     VLVKPLDNKDLLEGIEEYI"
     gene            complement(3962..>4443)
                     /locus_tag="VJA84_01265"
     CDS             complement(3962..>4443)
                     /locus_tag="VJA84_01265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012648124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HLD40789.1"
                     /translation="KEITFVLYDKKAYDIFNKNASSYLEYIIHKIQSGPFITVDIIIE
                     LNAGIVLIERSNPPYGWAIPGGFLDYNESIEDCAIREAKEETSLDIYDLKQLHTYSKP
                     GRDPRFHTVTTVFTAKGKGIPNADSDAANLKVFKPQEALKLDLAFDHKQVLKDYLNG"
BASE COUNT         1088 a         1188 c          885 g         1282 t
ORIGIN      
        1 ggatagcgaa ggatctcgtc ttttaaatta ccgacgagat tcttcggtcg ctctgctccc
       61 tcagaatgac aaaatggtca ttttaagaga ttatgacaca gtctgaatcc tacttctctc
      121 tgccaacttt ctttttggtt acaacaacat tagctaaatc attgcgaccg attcgggaca
      181 gtctgcccga ggtcaaactc gctgaaaaat tgcgtggctg aaaacctgct atatgtcttt
      241 tctcctctgg tggcggcgcc attaactgac ggattgcctc aaagatactg tgaatttctt
      301 catcgtgctc ttcaattttc ctttccagct cgtttaactt atacgccagc tctttatggg
      361 tagagataat ctccttaagc ctaacaaaaa cccgcataat ggcaatattt acctgtattg
      421 ctcttttgct gcgcaggacg ctggaaagca tagctacgcc ttgttctgta aagacgcaag
      481 ataaatactt agtgtgttgc cccctcttaa agcttccaaa ttggaatctt aaagactcct
      541 cctcatcttt gatcaactga aacataaaat cctctggaaa tctttcaata tttctcttta
      601 ccgctttatt caagttacca gtagttaccc cgtataattt tgccaggtcc ctatcaagca
      661 tcgccttttt acccctgagc agaagtatct tatttgttat agcctcttgg ggaattaact
      721 gtgctataga tctctttttt cgttccataa gcccctcttg gattaggtat cgcaaaatgt
      781 gaacttgaag cctttatctt cgtgccagca tctctgccgc ttcttccagg cctttcaaaa
      841 acaccccgcc gttggcaggg caggcatcca tataaggtct aaaggagtct attttttaag
      901 catattctca aattccctca caattctgct gacagaagta aagtgcattc ccaaatagtc
      961 atctaactaa tccgcaattt ttattcacca taaagcaggg atagcttatt atagccaccc
     1021 ctactttatg gtttatttta ccctaacgct aacaaaacaa agcaatctgt tgtttattcc
     1081 ccataggccg agagaattat ttcacttatc tcttgtccct tttctttagt ggcaggcaat
     1141 gccacttgat accacttacc gtctttgccg ggctggctgg gcatacctac aaacaagcct
     1201 tcctggcctt gcattacctt aaatcctttg acaataagac agccgcctat ggctaaatct
     1261 acaaatgcct taagcttact gccttccttc tcgaccctaa agagccgagc cacctgaatt
     1321 tcgctctcat ttaccattct tatcacctcc tcctacttat atagacgtaa gaggaggcta
     1381 ttttcgtgca aaaatatttt ctttttcgct ctctgccgga tctttgtggc cgagactgcg
     1441 gaaaatcatt actaagttcc gacttccttc ggcgcttagt gaccatttga ggcccaggat
     1501 gaggctaagg gtgaggaatt ggaagaaata ccttttgatg aagaaagagg cggcgagact
     1561 gaacatactt aagataaacc acttctgttg ctttagggct tggaacaaat ccggcttttt
     1621 tgggaaatct ttcaacgccg ctttagccgt aaccaataaa tccaggcaat agccgcagtc
     1681 agccaggtgt ttttcaatct ctcctctgcg gctgatagac gcggacttat ctaaatactt
     1741 ccccagctcc agctccgacg ggcaggcggg ggtctttttg aggtcaagat ggtcttggtt
     1801 taggccttct tttatcaact tttctaattt ttccatattc tttagcctcc gtcgggattg
     1861 cttcgtcgcc cgccttcgtc gggctcctcg caatgactat tgaccataga ctattgaccc
     1921 ttaattcttt ctctacttat taagacgcgc gaattggctg ttttcgtgca aaaatatttt
     1981 cagatatatc cctttttctt caaattttcc ctaagaccaa tcattgtccg gcgcaggatg
     2041 ctggaaacgg tgttaatagg gatattcaag aaatccgcga tttccctatg ggtctggtta
     2101 tgctggatat tcagtttcag gattagcttc tctctcggct ctaagaccgc aatcaactta
     2161 tctacggctt cagctaagtc ctctttggct aattcccggg aaaggtctgt tcctgaaggc
     2221 aggatattca agatatcgtt tactcccccc tcttcatcag cgcacaccga gcgctggcgg
     2281 ctgaatttgg cctgggagcg gataaagctg atcgccgcgt tctgggaaac cacgcttaac
     2341 cagccggaga tcttgtcctg atccttaacc agctccagct tattcttttc ccagatatct
     2401 aagaaaatcc cctggacaat atccttgata tcctctatcg cgcaggtgaa attatgccgg
     2461 ctaagccgga agcgcacgca cctttccgcc agcgggcgga aacgcaagac aaactcgctc
     2521 caggcggatt tatctttagt aatgcaccta ttgactaatt cttttaagat aagcaccaaa
     2581 ggcctgcctg atgtccctca tacaatcccc gccgaatttc tcaagtaacg cgttggcaat
     2641 ctctaaagcg cacattgcct ctgccactac cccggccgcc tgcaccgcgc aggtatccgc
     2701 gcgctggata gaggccaagg ccgccttctt ggaacggaga tccaccgaac ttaaaggctt
     2761 attcaaagtg gcaatcggct tcatatatcc gcggatgacg atatcttggc cgttagagat
     2821 cccgccttca atacctccgg cgttattggt tttacggtaa tagcctttgt ctttggaata
     2881 ataaatcgcg tcgtgcacct gtgagccgaa tctattggcg cactcaaagc ctaaaccgaa
     2941 ttctacggcc tttatcccag ggatagacat cactgcatgg gaaagccggg cattaagcct
     3001 tttatccggc tggacataac tgcccaggcc taccggcagg cccttgacct ggagctcaaa
     3061 taccccccct aaactgtctt ttctacttat tgcctgatca atgatttttc gcattgcctt
     3121 ttcggaggtc tcacctccga tagccgtaac tttagaatct atgctgacat taaactctga
     3181 taaaaatatc ttgcacaccg cccctaaagc tactcgcgcg gcggtctccc gggccgaggc
     3241 cctttccagg accggacggg catccccaaa accgtatttc aagaggccgg ccagatccgc
     3301 gtgcccgggg cggggattaa agatctccgg ttgagcctcc aggctgaaat cccggttttc
     3361 aatcaatatc cccagagggc tgccgatact ccgcccctta tacagtccgg agagaatctc
     3421 taccttgtcc ttttcaatcc gcatcctggc cccacggcca tagccctctt gccggcggca
     3481 caactccagg ttaatctttt ccttctccac cttcaaacca gccggtaggc cttccaaaat
     3541 cgccatcaat gccctgccgt gagattcccc cgctgtcaga tatctaagca tattttcctc
     3601 cgctcatata tattcctcta tgccttccaa gaggtcttta ttatccaggg gtttgaccag
     3661 cacccggcct aatcccttgg cctgcgcata taactcgcta tcggcataac cggtgataaa
     3721 gattaccggg atatcagctt tattcctgga cttaataatc tcctttatcc tttttacggt
     3781 ctggactccg tccatccccg gcatcctcaa atctatgact atcaggtcaa tatgcgtatc
     3841 ctgcaccttt tctatcgcgt caaagccatc tccggaggca tcagcagaat agccggattt
     3901 cttaagcagg ccgcagaggc tcttggtaac catcccgtcg tcatcaacca ctaagatatt
     3961 cttagccatt caaataatcc ttaagcacct gcttgtgatc aaaagccaaa tccaacttaa
     4021 gcgcctcttg cggcttaaag accttaagat tggccgcgtc cgaatccgca ttagggatgc
     4081 ctttgccttt ggcggtaaaa accgtggtta cggtgtgaaa acgggggtcg cgtccaggtt
     4141 tagaataggt atgcaattgc tttaaatcat aaatatccag ggatgtctct tccttggcct
     4201 cccggatcgc gcagtcctct atgctctcat tgtaatctaa gaaacctccg gggatggccc
     4261 agccataagg aggattggaa cgctcaataa gcacaatccc cgcgttaagc tcaataatta
     4321 tatccacggt aataaacggc ccagactgga tcttatggat gatgtattcc aaataacttg
     4381 aggcattttt gttaaagata tcataggcct ttttatcgta gaggacaaat gttatttctt
     4441 tta
//
LOCUS       DATDUB010000063         3048 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_2044922, whole genome shotgun sequence.
ACCESSION   DATDUB010000063 DATDUB010000000
VERSION     DATDUB010000063.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3048)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3048)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3048
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2044922"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1371)
                     /locus_tag="VJA84_01270"
     CDS             complement(<1..1371)
                     /locus_tag="VJA84_01270"
                     /inference="COORDINATES: protein motif:HMM:NF028237.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase N-terminal 7TM
                     domain-containing protein"
                     /protein_id="HLD40790.1"
                     /translation="MLEQFLNPANYYFNPYAVPTLLVSILIFSIGIFVLRQNKGSIIN
                     KAFFYKCLAMGFWLFSIFFVYACNNPALAIKIYKNFTFLGVVNIMPSIMFFTMAWSGE
                     IKRKKLFVAVNFSLSLAVYILVLTTDKMILPMRKYFWGYYPIYSFWLVFYLMLFFAQF
                     IIAMRSLYLTYKLEKISIRKTQKKLVFIALLSAITASADFLPKFFNIAMYPYGYISMF
                     FYISLVAYAIVKYRAFDIETVVHKTIIWLLSFSFIIIPIFFAYKAMLPAFERSKDLEL
                     TFWIFSFLITAFYLRVIQPKIDHLFQRRQANLEQISNRFSEDLVHLKDIGQLVKRIRE
                     TIARALYPQRVDIFIYNEDRKNYTLANVEDAPVRIEELKAENRFLSWLAGNNKIAYKE
                     FIDIDPAYVPVKEDAEEYFNLTGAILAIPLVLNEKLLGIINLGKKSNLKRYSAADSQF
                     LKTLKNQ"
     gene            complement(1364..2932)
                     /locus_tag="VJA84_01275"
     CDS             complement(1364..2932)
                     /locus_tag="VJA84_01275"
                     /inference="COORDINATES: protein motif:HMM:NF015331.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HLD40791.1"
                     /translation="MRNNDMVEINISRIIPAQKWRVIRLITKVWEFPAHIASVKEARV
                     IQKGHRMMKTQWRVEVEGIPISWIEEDILTPGENAIYFKAVEGDLQEFGGEWLFKDTP
                     EGTEVIVNARLRVGIPVIKDFADAYIKKLLTQNFEAILDAVERRLISTRYISHKRGDA
                     DKIAGFGLIGHFYNFKHLERGLKMLSPDFKMPSREFLSQLFPLTPAFKMQDILNFTSK
                     TGQTANGCLIIATFIPEMIEQDTQMIYSKVVRACKVAEKHGVGIVTLGGFTSIVGERI
                     GLDITREADVPITTGNTFTAAMAIDGVLKAASLINKDISSLKAAIVGGTGDIGSACAR
                     VLADRVRQLTITGRTKSNLGRLSKELAKKRKSRIIATSDNFSAVKDADIIIAAASVSA
                     SILKIDWFKPGAIICDVGYPKNISYTPTSRKDILIFSGGLAKSFSPINFSVDVGLPSP
                     NILYGCFAEAIILSLEKRFEPFSFGRGNITAEKIDEIRQLGQKHGFEVSDFYWGDKPV
                     DAPAIDNIKEAVNA"
BASE COUNT          840 a          745 c          656 g          807 t
ORIGIN      
        1 ctggttcttt aaggtcttca ggaattggga atccgcggcg ctgtagcgtt taagatttga
       61 cttcttgccc agattgatta tccccagcag tttctcattc aaaaccaaag ggatagccag
      121 gatcgccccg gtaagattaa aatactcctc ggcatcttct ttaaccggaa cataggccgg
      181 gtctatgtct atgaattctt tgtaggcaat tttgttatta cccgccagcc aggagagaaa
      241 ccggttttca gcttttaatt cctcaatcct caccggggca tcctcaacat tagccagcgt
      301 ataattcttt ctatcctcat tgtaaatgaa gatgtcaact ctctgggggt ataaggcccg
      361 ggcgattgtt tcccggatgc gcttaacaag ctggccgata tccttaagat gcaccaaatc
      421 ctcgctaaac ctgttagaaa tctgttccag gttagcctgg cgcctttgga agagatggtc
      481 tatcttaggc tggatcaccc gcagataaaa ggcggttatc aagaagctga atatccagaa
      541 agtaagttcc agatctttgg acctctcaaa agcggggagc attgctttat aggcgaaaaa
      601 tatgggaatg attatgaagg aaaaactaag cagccagata atggttttat gaaccactgt
      661 ctcaatatca aaggcccggt atttcacaat cgcgtaggct accagggata tataaaaaaa
      721 catagaaata tacccgtagg gatacatcgc gatattaaaa aatttgggga ggaaatccgc
      781 ggaagcggta atggcagata acaaagcaat aaataccagc ttcttctgcg tctttcttat
      841 ggatattttc tccagcttgt aagtcaaata taaactccgc atggcaatta taaattgggc
      901 gaagaaaagc attaaataaa aaaccagcca gaaactgtaa atgggataat acccccaaaa
      961 atattttcgc ataggcaata tcattttgtc cgtggtaagg actaagatat acacggcaag
     1021 agaaagggaa aaattcaccg ccacaaaaag ctttttgcgt ttaatctctc cagaccaggc
     1081 catagtgaaa aacattatgc tgggcattat gttaaccacc cccagaaaag taaaattctt
     1141 gtagatctta attgccaagg cgggattatt gcaggcatag acaaaaaaga tgctaaaaag
     1201 ccaaaaaccc atagccaggc acttatagaa aaaggcctta tttatgatgg aacccttatt
     1261 ctgcctaagg acaaatatac ctatggagaa aatgaggata ctgaccagaa gggtcgggac
     1321 cgcgtaagga ttgaaataat aattggcggg atttaagaat tgctcaagca ttgacagctt
     1381 cttttatatt atctatggcc ggggcgtcta ccggcttatc gccccaataa aaatccgaga
     1441 cctcaaaacc gtgtttttgg cccaactgcc tgatttcatc tatcttctcg gcagtaatat
     1501 tgcccctgcc aaaactaaaa ggctcaaaac gcttctccaa agacaatatg atggcctcgg
     1561 caaaacagcc gtataagata ttcgggctgg gaagcccgac atctacagaa aaatttatcg
     1621 gagaaaatga tttagccagg ccgccggaga aaataaggat gtccttcctg ctggtcgggg
     1681 tataggaaat attcttagga taccccacat cgcagattat cgcaccaggt ttaaaccagt
     1741 caatcttaag gattgaggcg ctgacgctgg cggcggcaat aattatatcc gcgtccttga
     1801 ccgcggagaa gttgtcgctg gtggcgatta tccggctttt gcgtttttta gctaactctt
     1861 tgcttaaacg gccaaggtta gacttggtcc tgccggtaat ggttaactgc cggaccctat
     1921 ccgccagcac cctggcgcag gcgcttccga tgtccccggt gccgcccaca atcgccgcct
     1981 ttaaggagga aatatccttg tttataaggc ttgccgcctt taaaaccccg tctattgcca
     2041 ttgccgcggt aaaggtgttt cccgtggtaa tcgggacatc cgcctcccgg gtaatatcca
     2101 ggccgattct ttcccccact attgaggtaa atccccccag ggttactatt cctaccccgt
     2161 gcttttccgc caccttgcag gccctgacca cctttgaata tatcatttgc gtgtcttgtt
     2221 caatcatttc cgggatgaaa gtggcaataa tcagacagcc attggcagtc tgtccggtct
     2281 tagaggtaaa atttaagatg tcctgcattt taaaagccgg agtcaaagga aaaagctggc
     2341 taaggaattc ccgcgagggc atcttaaagt ccggagacaa catctttaag ccgcgttcca
     2401 aatgcttaaa gttatagaaa tgcccgataa gtccgaatcc ggcgatctta tcggcatctc
     2461 cgcgtttatg gctgatatac ctggtagaaa tcaaacgccg ctctaccgcg tctaatatag
     2521 cctcaaagtt ttgggtcaac agtttcttga tgtaagcatc ggcaaaatcc ttgattaccg
     2581 ggatgcccac ccgcaggcgg gcattaacta tgacctccgt accttcggga gtatccttaa
     2641 acagccactc cccgccaaac tcctgcaagt ccccctctac ggccttaaaa tatatggcgt
     2701 tttctcccgg agtaagaatg tcctcctcaa tccagcttat cggtatccct tcaacctcaa
     2761 cccgccactg ggtcttcatc attctgtggc ctttttgaat cacccgcgcc tctttgaccg
     2821 aggctatatg cgcggggaat tcccagacct tggttatcag gcggatcacc cgccatttct
     2881 gggccgggat aatccgggaa atgtttatct ctaccatatc gttattgcgc ataattactc
     2941 cctttttccc cgttttccat catcccataa ttcaccttga gcggctggac gggacaccct
     3001 tctttccttg cccgcctgat tatatgctat cttttcgttt atccagcg
//
LOCUS       DATDUB010000064         2318 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1209386, whole genome shotgun sequence.
ACCESSION   DATDUB010000064 DATDUB010000000
VERSION     DATDUB010000064.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2318)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2318)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2318
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1209386"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..802
                     /locus_tag="VJA84_01280"
     CDS             <1..802
                     /locus_tag="VJA84_01280"
                     /EC_number="2.6.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013227.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS family aminotransferase"
                     /protein_id="HLD40792.1"
                     /translation="EPDSYTISLEGIEKALKKKNKLKIKAIVPVHLYGQCADIDGILK
                     IAKKHKLKVVEDTAQAFGADYEGKKAGTFGDCGALSLFPGKNLGAFGDAGAILTNNQA
                     VAERLKIFRNQGNKEKYYHLVIGYNNRLDTLQAAILKVKLKYLDGWNKRRQENAEYFN
                     QQLKGLPLKTPFVPAYTTHIYHQYILRLNGASQKLIEYLRAKGIDSRVYYPVSLHLQK
                     CFKDLGYKKGDFPESEKACIQTLAIPVYPDLTQEEKYYIVSSIKEYFK"
     gene            986..1759
                     /locus_tag="VJA84_01285"
     CDS             986..1759
                     /locus_tag="VJA84_01285"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HLD40793.1"
                     /translation="MLKLSVVVLTKNEERNIKDCLESVSGWVDEIIVLDDESADKTAE
                     IAGKYGAKIIHRKMDVEGRQRNFGYAQARNQWVLSLDADERVTPELKEEISAAISKET
                     PCNGWTIPRRNYVGDYWARYGGWYPSPQLKLFRKDKFRYEEAAVHPRAFMDDPCGHLK
                     ADIIHYSYKNLEDFIGKMNNQTTREAQKWYAQNKPMRLGKFIWRSYDRFFRAYLGKKG
                     WKDGYLGFVLAYFAGLYQFLSYLKYRELVRVNKCPRTIP"
     gene            1738..>2318
                     /locus_tag="VJA84_01290"
     CDS             1738..>2318
                     /locus_tag="VJA84_01290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40794.1"
                     /translation="MPQDYSVDAYNRLVVRRKKEELTPWGSFSTDKDNRLIYWLNEPS
                     AWRAKYQLPEKLVFIGGWKLNSNYDLELELKREKPNLSRETLALKGRIIACEKDSLVF
                     EIQSIKKDGLDSFNLLKLSGNWQADEFNRLTFLVTKKDFPDTLILQGAWQLNDNQQIT
                     YIYEKANLRTKTRSSQSLVFSGYWEITPAHRLS"
BASE COUNT          661 a          503 c          573 g          581 t
ORIGIN      
        1 tgagccggac agctatacta tttccttgga aggcatagaa aaggcattaa agaaaaagaa
       61 taagcttaag atcaaagcca ttgtcccggt gcacctttat ggccaatgcg cggatataga
      121 cggcatatta aaaatagcca agaaacataa gctaaaagta gtggaagaca ctgcccaggc
      181 ctttggcgcg gattatgaag ggaagaaggc cggcactttc ggagactgcg gagctttgag
      241 tctttttccg ggcaagaatt taggggcctt tggcgatgcc ggggcgattt tgactaataa
      301 ccaggctgtt gccgagcgtt tgaagatttt ccggaatcag ggaaacaagg agaaatacta
      361 tcatctggtt atcggttata acaaccgcct ggacaccctt caggcggcaa tattaaaggt
      421 aaagctaaaa tatttagacg gctggaataa aagaaggcag gaaaacgccg aatactttaa
      481 ccaacagcta aaaggcctgc cgcttaagac gccttttgtc ccggcatata ccacgcatat
      541 ctatcatcag tatatcctgc gtctcaatgg cgcaagccaa aagctgattg agtatttgcg
      601 ggctaagggc attgattccc gggtttacta tccggtttcc ctgcatctgc agaaatgttt
      661 caaagacctg ggctataaaa aaggcgattt cccggagtcg gagaaggcct gcatccaaac
      721 cctggcaatc ccggtctatc ccgacctgac ccaagaggaa aagtattata ttgtttcttc
      781 tataaaagag tattttaaat aattgtcatt cagactgtgt cacaatgtca tcctgagcgt
      841 tagcgaagga tctcgttttt taaattaccg gcgagattct tcggtcgctc tgctccctca
      901 gaatgactta atggtcattt taagggatta tgacacagtc tgattgcgac cccgccttgg
      961 cgggggaact aatctcccga ttttgatgct taaactatcc gttgtcgtcc tgactaaaaa
     1021 cgaagaaaga aatattaaag actgcctgga gtcggtttcc ggctgggtgg atgagataat
     1081 tgtgctggat gatgaaagcg cggataagac cgcggagatt gccggtaagt atggggccaa
     1141 gattatccat cggaaaatgg atgttgaggg ccgtcagcgt aactttggct atgcccaggc
     1201 caggaatcaa tgggtcttaa gcttggatgc cgatgagcgg gtcaccccgg aattgaaaga
     1261 ggaaatttcc gcggccatca gcaaagaaac cccttgcaac ggctggacca ttccccggcg
     1321 aaattatgtc ggtgattatt gggcgcgtta tggggggtgg tatcccagcc cgcagttaaa
     1381 gctttttcgt aaagataagt ttcgttacga agaggccgcg gtgcacccgc gcgcgtttat
     1441 ggatgaccct tgcggacacc ttaaagcgga cataatccat tattcctaca aaaatctgga
     1501 agatttcatt ggcaaaatga ataaccagac cacccgtgag gcccaaaagt ggtatgccca
     1561 aaataaacca atgcgcctcg gtaagtttat ctggcgcagc tacgacagat tttttcgggc
     1621 ctatctgggc aagaagggct ggaaagacgg atatcttggc tttgtcttgg cctatttcgc
     1681 cgggctttat cagttcttga gttatctcaa ataccgcgag ctggtaagag tgaataaatg
     1741 ccccaggact attccgtaga cgcttataac cgcctggttg taagaagaaa aaaggaagaa
     1801 cttaccccgt ggggatcatt ttccaccgat aaagataatc gcttaattta ctggctcaat
     1861 gaaccctccg cctggcgcgc gaaataccag ttgccggaaa aattagtttt catcggaggg
     1921 tggaaactga attctaatta tgatttggag cttgagctta agcgggagaa accgaactta
     1981 agccgggaaa ccttggcctt aaaaggcagg attatcgcct gcgaaaaaga cagcttggtt
     2041 tttgaaatcc agagcataaa gaaggatggc ttggatagct ttaacttgct caaattatcc
     2101 ggcaattggc aggccgatga atttaaccgg cttaccttcc tggtaactaa aaaggacttt
     2161 cccgacaccc ttattcttca aggcgcctgg cagttaaacg acaatcagca gattacctat
     2221 atttatgaga aggctaatct taggactaaa accaggtctt ctcaaagctt agtctttagc
     2281 ggctattggg aaataactcc cgcgcatcgg cttagtta
//
LOCUS       DATDUB010000065         2116 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1878807, whole genome shotgun sequence.
ACCESSION   DATDUB010000065 DATDUB010000000
VERSION     DATDUB010000065.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2116)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2116)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2116
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1878807"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..770)
                     /locus_tag="VJA84_01295"
     CDS             complement(<1..770)
                     /locus_tag="VJA84_01295"
                     /inference="COORDINATES: protein motif:HMM:NF024241.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HLD40795.1"
                     /translation="MNKIKNSLRASYWDGVCASVMVGLTQDYLVPYALALKATVKQIG
                     LLSCLPNLGAALIQLKSADITERLLSRKRITLISVFCQALTLLPILFIPYFPKDNKPL
                     ILIFLVVLFSGFGALSLGPWSSWMSDHIPANKRGEYFGWRNRSLGVVAVLSALFAGII
                     LQFYKDNVLSGFLIILVFALAARSLSWYFLTRMYEPKFRHSHDAKFSFPDFLKRARES
                     NFARFVFFVAGLNFCVNLAAPFFAVFMLRDLRFSYLTYT"
     gene            complement(829..1836)
                     /locus_tag="VJA84_01300"
     CDS             complement(829..1836)
                     /locus_tag="VJA84_01300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020258015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HLD40796.1"
                     /translation="MYYNNRDVRLEEMPKPKIGPGEILLKMKASGICGSDVMEWYRIK
                     KAPLVLGHEVTGEIAEVGEAVKGYKPGERVFVAHHVPCNTCRYCLTGNHTACQTLHTT
                     NFYPGGFAEYIRVPALNVDRGTFLLPKSVSFEEGTFIEPLACVLRGQRMVGLNPGQSV
                     LILGSGISGLLHLLLAKSLGAGRIMMTDINEFRLKTAKELGADAVINAKDDVIGALRE
                     ANENRLADLVIVCAGASEVFTHALQAVERAGSILCFAPTAPGETLNVPVNDFWRNQIK
                     IIHSYGSGPQDNAMALELLKAKRVRVDRLITHRLKLAEIGEGFRIMSESKDSIKVIIE
                     S"
BASE COUNT          579 a          569 c          461 g          507 t
ORIGIN      
        1 gtataagtca gatagctaaa acgcagatcc cggagcataa acacggcgaa gaaaggcgcg
       61 gccaggttga cgcagaagtt tagaccggcc acaaagaaca caaaccgggc aaaattgctt
      121 tcccgcgccc gttttagaaa atccgggaaa ctaaacttag catcatggct atgccggaat
      181 ttaggctcat acatccgggt aaggaaatac cagctcaagc tccgcgcggc cagggcaaaa
      241 acgagaataa tcaagaaacc tgaaaggaca ttatccttat aaaactgtaa gattatcccg
      301 gcaaatagcg cacttagcac cgctaccacc cccaggctcc ggtttctcca gccaaaatac
      361 tcaccgcgct tattcgccgg gatatgatcg ctcatccagg acgaccacgg ccccaggctt
      421 aaggccccga acccgctaaa caataccacc aggaaaataa ggataagcgg cttattatct
      481 tttgggaaat aaggaataaa taaaatcggc agaagggtca aggcctggca aaataccgat
      541 atcagggtaa tccttttgcg gcttaaaagc ctttcggtga tatccgcgct ttttagctgg
      601 atcaaggccg cccccagatt aggcagacaa ctcaacaggc cgatctgctt aaccgtggct
      661 ttaagcgcca aggcataggg aaccagataa tcctgggtca accccaccat taccgaggcg
      721 catacgccgt cccaatatga agccctaagg ctgtttttta tcttgttcat aatgtaacag
      781 ggacggttct taaatagagg taactccata taaagaaccg tccctctttt aggattcaat
      841 tataactttt atggaatcct tggactcgct cataatccgg aaaccctcgc ctatttccgc
      901 taacttcagg cgatgggtga tcagcctatc caccctgact cttttagctt taagtaattc
      961 cagggccatc gcgttatcct gcggcccgga gccataggaa tggattatct ttatctgatt
     1021 gcgccagaag tcgttcaccg ggacattcag ggtttctccg ggggcagtgg gggcaaaaca
     1081 gagtatggag ccggcgcgct ctaccgcctg cagggcatga gtaaagacct cggatgctcc
     1141 ggcgcagaca attaccaggt ccgccaggcg gttttcatta gcctcgcgca aagcgccaat
     1201 gacatcgtct ttggcattaa taaccgcgtc cgcccccaat tctttagccg tcttaaggcg
     1261 gaattcgttt atatcagtca tcataatcct gcccgcgcca aggcttttgg ccagaagaag
     1321 atgcagcagg ccggatatac cgcttcctaa aattaatacg ctttggccgg ggttaagtcc
     1381 aaccattctc tggccccgta agacgcaggc caaaggctca ataaaagttc cttcttcaaa
     1441 agatacgctc ttcggcaaaa gaaatgtccc tctgtccaca tttagcgctg gcacccggat
     1501 atattcggca aaccctccgg gatagaaatt ggtggtatgc agggtctgac aggcagtatg
     1561 attaccggta agacaatagc ggcaggtatt acaagggaca tggtgggcca cgaatacccg
     1621 ctctcccggc ttataaccct taactgcctc cccaacctcg gcaatctcgc cggtaacttc
     1681 atggcccagg accagagggg ccttcttgat ccggtaccac tccatcacat cgctgccgca
     1741 gataccgctg gccttcatct tgagcaaaat ctcccccggc ccaatcttgg gcttaggcat
     1801 ctcctccagc cgcacatccc ggttattata atacatccct acaagcataa tattagaaat
     1861 tctaaacacc aaactctaaa ttctaaacaa atctaaaatt ataaacctaa aacacaaaaa
     1921 ttacgtattt tatgttttga ttttttaatt tttaacattt gagcttgttt aggatttaga
     1981 atttagagtt ttatttttta cctcattgaa tatctcgcag gccttcttgg gattggcctt
     2041 ctcatgaatc accgcctgca aggccctggc aattgccgcc ggatgcgggc tctgccagac
     2101 atttctcccc agattc
//
LOCUS       DATDUB010000066         4184 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1379198, whole genome shotgun sequence.
ACCESSION   DATDUB010000066 DATDUB010000000
VERSION     DATDUB010000066.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 4184)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4184)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4184
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1379198"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            114..1934
                     /locus_tag="VJA84_01305"
     CDS             114..1934
                     /locus_tag="VJA84_01305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40797.1"
                     /translation="MDVCIRISTDQKEIAKYLLKLKHDKFSQRLNSAYGLPKNKVDPV
                     MARIGFDGQENRLGWSPANIQWIFDNYHTVEKLLKDAEFIRRNFLYAVFCGMGGSGLS
                     VQLVKDTVGEKKARIYSLRTTDPKAIKEILDEISRREGSLEKALLKTLVIAVSKSGST
                     IETVHHKKYFEELYKKLGIEIKEHLWVVTDKGSPMDTGDYPQRQIQLNGRSDIGGRWT
                     SPATGVFLLPLAILAPKKLKPVLERAKVMNRERYLKKDVFFKLGAFLYYWAVYHKKDK
                     LTMFMSREFKDIPMWAEQLFEESLGKDGKGVSLFYGEKLSVKGLKPVELNDRVFFRIK
                     LSGKAPQEKLWRYLSEHKYPVFEINAGTINSIGGILLGLQRAVAAIGYLWDICFVDQP
                     AVEGYKKATKEMMSHPGEIKPPSQWGCAGYKKIKLYYGPLIEAGIISEDELKAEVQAI
                     KGGFEDAPAVYAAILSLLLRKGRLEAVELTSYARMTKGLSDILEQVRYDFFTRGLKMP
                     AKLGEGPDKNHSYHQNIEAGKDMWFSVYFMASVLEQPEALEFDSRLLKAQAIGTVQSL
                     VNKRRRVVLIELMGTIRESEKDLKDFFARALRFLSKQGIV"
     gene            2104..2430
                     /gene="trxA"
                     /locus_tag="VJA84_01310"
     CDS             2104..2430
                     /gene="trxA"
                     /locus_tag="VJA84_01310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013613130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0015036 - disulfide oxidoreductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HLD40798.1"
                     /translation="MSITRVDDKNFKEEVLKASLPVLADFFAEWCGPCKMIAPAIEDI
                     AKEYAGRLKVVKVDVDSAGSTASSLGIMSVPTIMFFKDGKVISQTVGALSKSELKKKV
                     NEVISA"
     gene            2423..3517
                     /locus_tag="VJA84_01315"
     CDS             2423..3517
                     /locus_tag="VJA84_01315"
                     /inference="COORDINATES: protein motif:HMM:NF024891.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HLD40799.1"
                     /translation="MPKKVFIAATMQNDGKTTVSMGLIFNFQERFKNIGFIKPIGQRY
                     LEKRGQKVDEDSLLIEDVCGIKCGIKDMSPIAVEKGFTERYIDHPDKEAIDRLIRESF
                     ARVSQDKDLVVIEGTGHAGVGSVFDHSNAAVARFLGAKVILVSSGGIGRPIDEIMLNK
                     ALFEKEGVALAGVIINKVMPDKFDRVKNTVRKGLERLGVDVLGVMPYQPMLTFPTMRQ
                     ILEETNFKVFSGDGCLDNYIAKIIIGAMEPHNALNFMSQNSLLITPGDREDLIMTAVG
                     LHISKAAVCPTQIAGIILTGGFLPHPEVIGVIKDTNIPVLTTELDTYTAASLIHDLTV
                     KIRPQDDKKIEAVKNMVKEYVDIESMLKWI"
     gene            3508..>4184
                     /locus_tag="VJA84_01320"
     CDS             3508..>4184
                     /locus_tag="VJA84_01320"
                     /inference="COORDINATES: protein motif:HMM:NF013665.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase"
                     /protein_id="HLD40800.1"
                     /translation="MDIIKEMRLRSKKRQKLIVLPEKADPRIKEAAKIIQKEGIARIA
                     VLGKEDLEQKKIEQFAQVFFELRKHKGMTVDEARRVVGQPLYYAAMMVRLGEADGFVA
                     GAANSTPDVARSAIYCLGVDPKINIVSSCFVMVVPDCSFGENGVFIFADCGIVPSPDA
                     RQLAGIAISSAKLAEDLFAMTPRVAMLSYSTKGSAKGEFVDKVVEAAKLAKFARPDLL
                     IDGELQL"
BASE COUNT         1087 a          864 c         1233 g         1000 t
ORIGIN      
        1 gcccctaccg caaggccttg agccgccagg ccgccgcttc cgagctcctg cgctgctccg
       61 gcacccagct tgacccggag gtagtccagg ccgcggtgga ggtgttatag aaaatggatg
      121 tgtgtattcg tatctctacc gatcagaaag agatcgccaa gtatttatta aagctcaaac
      181 acgataaatt cagccagcgg ctgaattccg cttacggact gcctaagaac aaggtggacc
      241 cggtgatggc caggattggc tttgacgggc aggaaaaccg ccttggctgg agcccggcca
      301 atattcagtg gatatttgat aactatcata cggtggagaa actgcttaag gacgcggagt
      361 ttatccgcag gaatttcctt tatgcggtct tctgcgggat gggcggctcc ggattgagcg
      421 tccagctggt aaaagacacc gtgggagaga agaaggcgcg gatttacagc ctaaggacca
      481 ccgaccccaa ggcgataaag gaaatcttag atgagatatc caggcgggaa ggctctttag
      541 aaaaagccct gttaaagacc ctggtgatag cggtgagcaa gtccggctcc accatagaaa
      601 ccgtccacca taagaaatat tttgaggagc tgtataaaaa gctggggata gagattaagg
      661 aacatctgtg ggtggttact gacaagggtt cgcctatgga taccggggat tatccgcaga
      721 ggcagataca gctcaacggc cgttctgata tagggggcag gtggacttct ccggcgacgg
      781 gtgtgttttt gctgcctttg gctatcctgg cgcccaagaa actgaagccg gtcctggagc
      841 gggctaaggt aatgaaccgg gaaagatatc tcaaaaaaga tgtctttttt aagctcgggg
      901 cgtttttgta ttattgggcg gtttatcata agaaggacaa gctgactatg tttatgtccc
      961 gggagtttaa ggatatcccg atgtgggcgg aacagctctt tgaggagtct ttgggtaagg
     1021 acggaaaagg ggtaagcctt ttctacggag aaaaactctc ggtcaaggga ctaaagccgg
     1081 tggaattgaa cgaccgggta tttttcagga taaagctgtc aggcaaggcc ccgcaagaga
     1141 agctctggag atatttaagc gagcataaat acccggtatt tgagataaat gccgggacga
     1201 taaattccat aggcggaatt ctcctgggcc tgcaaagggc ggtggcggcc atagggtatc
     1261 tctgggacat ctgttttgtg gaccagccgg cggttgaggg atacaaaaaa gcgactaaag
     1321 aaatgatgtc tcatccggga gaaattaagc cgccttcgca atggggatgc gccgggtata
     1381 aaaagattaa attgtattac ggcccgttga ttgaggccgg gataatcagc gaggatgaac
     1441 ttaaagctga agtccaggct ataaagggcg gatttgagga tgccccggca gtatacgcgg
     1501 caatcttaag cctcttactg cgcaagggca ggctggaggc ggtagagctg acctcatacg
     1561 cgaggatgac caaaggctta agcgatattc ttgagcaggt ccggtatgat ttctttaccc
     1621 ggggcttaaa aatgccggct aagcttggcg aaggcccgga caagaaccat tcctatcatc
     1681 aaaatattga ggccggaaaa gatatgtggt tttccgtata ttttatggcc agtgtcctgg
     1741 aacagcctga agcgctggag tttgacagcc gcctgcttaa ggcccaggcg atagggacgg
     1801 tccaatcctt agtcaataag cggcgcaggg tggttttaat tgagcttatg gggacaatca
     1861 gggaaagcga gaaggacctg aaagattttt ttgcccgggc actccggttt ttaagtaaac
     1921 agggcatagt ctaaagggta atgcgtcagt gaacggatgc gtgtcattgc gagcgaacga
     1981 agtgagcgaa gcaatctccg tcgggattgc ttcgtcgctc acgctcctcg caatgacaaa
     2041 ttacttccaa acgctgaact gttactgtga ttttgtctta atcaagaaag ggaggtattt
     2101 tgtatgtcta taacgcgcgt ggatgacaag aattttaagg aagaggtgtt gaaggcgtct
     2161 ttgccggttc tggcggattt ttttgccgag tggtgcggcc cctgcaagat gattgccccg
     2221 gcaattgagg atatcgccaa agagtatgcc ggcaggctta aggtggtcaa ggtggatgtg
     2281 gatagcgccg gttctaccgc ttcaagcctg ggcataatgt cggtgccgac gataatgttc
     2341 tttaaagacg gcaaggtgat ttcccaaacc gtgggcgcgc tttctaaaag cgagcttaaa
     2401 aagaaggtga acgaggtaat cagtgcctaa gaaggtcttt atcgccgcca caatgcagaa
     2461 tgacggcaag actaccgtct caatggggct tatttttaat tttcaggaac ggtttaagaa
     2521 tatcggcttt attaagccta ttggacagcg ctatttggaa aaacgcggcc agaaggtgga
     2581 tgaggactcg cttttaattg aagatgtctg cgggataaag tgcgggatta aggatatgag
     2641 tccgattgcc gtggaaaaag gttttaccga gaggtatatt gaccatcccg acaaggaggc
     2701 gatagaccgt ctgataagag agtcttttgc ccgggtttct caagataagg atttagtggt
     2761 cattgagggc accggccacg ccggggtggg ctcggtgttt gaccattcca atgccgcggt
     2821 agccaggttt ctgggggcta aagtgatttt ggtgtcgtcg ggtggaatag gccggcccat
     2881 tgatgagatt atgttgaaca aggccctttt tgagaaagag ggggtggccc tggccggggt
     2941 gatcataaat aaggtcatgc cggataaatt tgacagggtc aagaatacag tccgaaaggg
     3001 gttagaaagg ctgggggtgg atgtcctggg ggtcatgcct tatcagccga tgcttacctt
     3061 tcccacgatg cgccagattt tagaagagac caatttcaag gttttttccg gggatggctg
     3121 tctggacaat tatatcgcca agatcattat cggggcaatg gaaccgcata acgcccttaa
     3181 ttttatgtcc cagaattccc tcttgattac ccccggcgac cgggaagacc tgattatgac
     3241 cgccgtgggc ctgcatattt ccaaggccgc ggtctgtcct acccagatcg cgggaataat
     3301 cttgaccggc ggtttcctgc cgcatccgga ggtaatcgga gtaattaagg ataccaatat
     3361 tccggtgttg accacggagt tagataccta taccgcggct tctttgatcc acgatttgac
     3421 ggtaaaaatc cggccccagg atgataaaaa gatagaggcg gtaaagaata tggtcaagga
     3481 atatgtggat atagaaagta tgttgaaatg gatataatta aagaaatgcg cctgcgctct
     3541 aaaaagaggc agaaattgat tgtccttccg gagaaggctg acccccggat taaagaagcg
     3601 gcaaagataa ttcagaaaga aggtatagcc cggatagccg tcttgggcaa agaggactta
     3661 gagcagaaga agattgagca gtttgcccag gtattctttg aactgcgtaa acataaaggg
     3721 atgaccgttg atgaggccag gcgggtagtc ggccagccgt tatattacgc ggcgatgatg
     3781 gtgaggctcg gggaagccga tggctttgtg gccggggcgg ccaattccac cccggatgtg
     3841 gccaggtccg ctatatactg cctgggggtt gaccccaaga taaacatagt ttccagttgt
     3901 tttgtgatgg tagttcctga ctgtagtttc ggggaaaacg gggtattcat ctttgctgac
     3961 tgcgggatag tcccgagtcc ggatgccaga cagttggccg ggattgccat atccagcgct
     4021 aaattggccg aagacctttt tgccatgact cccagggtgg caatgttaag ctattctact
     4081 aaaggttcgg ctaaaggtga gtttgtggat aaggtggtag aggcggctaa gctggctaaa
     4141 ttcgccaggc ctgacctatt gatagatggg gaattgcaat taga
//
LOCUS       DATDUB010000067         2193 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1546699, whole genome shotgun sequence.
ACCESSION   DATDUB010000067 DATDUB010000000
VERSION     DATDUB010000067.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2193)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2193)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2193
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1546699"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(41..862)
                     /locus_tag="VJA84_01325"
     CDS             complement(41..862)
                     /locus_tag="VJA84_01325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013907874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HLD40801.1"
                     /translation="MENLIKAFVFLFGSIIGSFLNVCIARMPQEGYSLMRPGSHCPLC
                     RKPIHWYDNIPVISFMFLGGHCRFCRERISVQYPIVELLTALSFLYIYSRYRLYLDFF
                     IYAAFACGLIVSTFIDIRWRIIPDEISLGWIAAGLIFALVKSLPVLKQFPRIPIVDSF
                     LGAIIGGGLVYGSGLLGNLIFFKLMKRKSIEGETESIGGGDVKLLAMIGAFIGWKSAI
                     LTFFIAPFMGAVVGIYVLAFKKSHLIPYGPFLSLAALISLFYGNHLLRLLFGYQF"
     gene            complement(846..1724)
                     /gene="aroE"
                     /locus_tag="VJA84_01330"
     CDS             complement(846..1724)
                     /gene="aroE"
                     /locus_tag="VJA84_01330"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: protein motif:HMM:TIGR00507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004764 - shikimate 3-dehydrogenase
                     (NADP+) activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HLD40802.1"
                     /translation="METTSKIYGLIGYPIKHSLSPAMHNAAFKKLKMNALYMLFEKTR
                     EEFPAAVRQLKAMKVRGFNVTVPYKEEIIPYLDGLDEQARQIGAVNTVVNRKGGFIGY
                     NTDAPGFIASLKEDLDCVPQNKNIFIIGAGGAARAIGFALAKEKAKTIVFCDCLAEKA
                     KRLSKDIKGIFPDCLVSSVTSPIDCQLSWAGTRPAPTIDLLVNASNCGMKPGDPLPID
                     PKILPAGIRIYDIIYNPSPTKLVKESGRKRIKAVNGLGMLLRQGTAAFEIWTNKKAPV
                     ELMRQALLKAINGKPH"
     gene            complement(1758..>2193)
                     /locus_tag="VJA84_01335"
     CDS             complement(1758..>2193)
                     /locus_tag="VJA84_01335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40803.1"
                     /translation="KILILAGVVLTVGLYYSRENLRLDWEDLVELVNIQIDNFSYPFN
                     AERSRPVSSLETETNLNSNVGEPFISFSKSQWDKFWDILYGAYPVDYSDNERLPPRVR
                     QLNYPEMEEKLAQAFPQPFAYFQEEHWKQFWPMVFGKKAKPR"
BASE COUNT          614 a          553 c          489 g          537 t
ORIGIN      
        1 caggatgacc gttgaaaaat gaggtttttc aacggtcaat tcagaattga tatccaaaaa
       61 ggaggcgcag gaggtgattt ccgtagaaaa gagagataag cgcggctaag gagaggaacg
      121 ggccgtaagg gatgaggtgg ctctttttaa aggccaggac atagattccc actaccgccc
      181 ccataaaagg ggcgataaaa aaggtcaaaa tcgctgattt ccagccgata aaggctccga
      241 tcatagccag gagcttaaca tcccctcccc cgatagactc ggtctcgcct tcaatagact
      301 tcctcttcat cagcttaaag aatatcaggt tccccagcag tccgctaccg taaaccaggc
      361 cgccgccgat aatcgccccc aggaaagaat ccactatagg aatccggggg aactgcttta
      421 acaccggaag gctctttacc agcgcgaaga tcagtcccgc ggcaatccag cctaaagata
      481 tctcatccgg gataatccgc cagcggatgt caataaaggt agaaacaatc aggccgcagg
      541 caaacgcggc ataaatgaaa aaatccaggt ataaacggta acggctgtaa atatacagga
      601 aactaagcgc ggtcaataac tctacgatgg gatactgcac tgatatcctc tcccggcaga
      661 agcggcagtg cccgcccagg aacataaagc tgatcaccgg gatattgtca taccaatgga
      721 taggcttgcg gcacaaagga cagtgcgaac ccggccgcat caaagaatac ccctcctggg
      781 gcatgcgcgc gatgcagaca ttcaggaaac tcccgatgat actgccgaat aaaaagacaa
      841 aagccttaat gaggttttcc atttatagcc tttaataacg cctggcgcat aagttcaacc
      901 ggggccttct tgttggtcca gatttcaaag gcggctgtcc cctggcgtag aagcatccct
      961 aaaccgttga cggcttttat cctttttctt ccggattcct taaccagctt agtcggtgaa
     1021 ggattataaa taatatcata aattcttatt ccggcaggca atattttagg gtctattggc
     1081 aggggatcgc caggcttcat cccgcagttg gaagcattaa ctaataaatc aatagtaggg
     1141 gcaggccttg tgcctgccca agatagctga cagtctatag gcgaagttac cgacgaaacc
     1201 agacaatccg ggaaaatgcc cttgatatcc ttagacaatc ttttggcctt ttcagccaga
     1261 caatcgcaaa agactattgt cttggccttt tctttggcca gggcaaaacc tatggccctg
     1321 gccgccccgc cggcgccaat aataaatata tttttatttt gaggaacaca atctaaatcc
     1381 tctttcaggg aagcgataaa tcccggggca tcggtattat aaccgataaa tccccccttg
     1441 cggtttacta ccgtattcac cgccccgatc tgcctggcct gctcatctaa accgtccaga
     1501 taagggataa tctcctcttt ataaggcaca gtaacattaa aaccacggac cttcattgcc
     1561 tttaactgcc ggactgccgc cggaaactct tcccgggttt tctcaaacag catatacagc
     1621 gcgttcatct tcagcttctt aaaagccgcg ttatgcattg ccggggataa actgtgtttg
     1681 atgggatatc cgatcaaacc gtaaatttta gaagtagttt ccattaacta ttaactatag
     1741 accctttatt cttttactta cctgggcttg gcctttttgc cgaagaccat tggccagaat
     1801 tgcttccagt gttcttcctg aaaataagcg aaaggttgag ggaatgcctg ggccagtttc
     1861 tcttccatct ccgggtaatt aagctgtcgg acccggggag gcagtcgttc attatccgaa
     1921 taatctaccg gataggcccc gtaaaggata tcccagaatt tatcccattg gctcttggag
     1981 aagctgataa acggctcgcc gacattacta tttaaattcg tttctgtttc taacgagctt
     2041 accgggcggg acctttcggc gttaaaagga tagctgaaat tatcaatctg gatatttacc
     2101 agctcaacta agtcctccca gtctaagcgc aggttttccc gggaataata caggcctacc
     2161 gtcaacacta ctccggcaag aataagtatt ttc
//
LOCUS       DATDUB010000068         2753 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1213324, whole genome shotgun sequence.
ACCESSION   DATDUB010000068 DATDUB010000000
VERSION     DATDUB010000068.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2753)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2753)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2753
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1213324"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            108..599
                     /locus_tag="VJA84_01340"
     CDS             108..599
                     /locus_tag="VJA84_01340"
                     /inference="COORDINATES: protein motif:HMM:NF015908.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheD"
                     /protein_id="HLD40804.1"
                     /translation="MNDNNLIEVGMGDMKMVSAPRRLITRALGSCLGITFYSPQIKSG
                     AMAHPMLPDIDKAKMKSNPNRYVNSVIIRTLDEMEKLGVLKNGLEIKIFGGAHMFSFI
                     TADSLLNVGEKNIEVAKELLGKLGLKIIAEEVGGTFGRTIELNLENGKVFVDTVSWGR
                     KEV"
     gene            616..1668
                     /locus_tag="VJA84_01345"
     CDS             616..1668
                     /locus_tag="VJA84_01345"
                     /EC_number="3.1.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015326687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0008984 - protein-glutamate methylesterase
                     activity [Evidence IEA];
                     GO_function: GO:0050568 - protein-glutamine glutaminase
                     activity [Evidence IEA];
                     GO_process: GO:0006482 - protein demethylation [Evidence
                     IEA];
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0018277 - protein deamination [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis response regulator protein-glutamate
                     methylesterase"
                     /protein_id="HLD40805.1"
                     /translation="MIEKKVKVLVVDDSFLMRKIISDAINSDPALEVVYKAKNGQEGL
                     QKILELKPDIVTLDINLPIMNGLSVLQEVMKKQPCKVIMLSAYTREGAADTMKALELG
                     AIDFIAKPSGEISLDIYKLKDEITSKIKLAARIKESKFLNTLSEESAIRHPREKAIAI
                     KKLVIIGASTGGPKAVLEIMQDIPAGLQAAFLIVQHMPAGFTTTFAERLSWQSKLKAK
                     EAQEGDTVMADKILVAPAGYHLILEQNGKELKTRLNQDSLVNFVRPSIDVTMYSAVEA
                     FHGKDIIAVILTGMGKDGLDGCRKIKEAGGTILIQDEASSVVWGMPGAVYEAGLSDKV
                     LPVSKIAEAIVKEINR"
     gene            1820..2431
                     /locus_tag="VJA84_01350"
     CDS             1820..2431
                     /locus_tag="VJA84_01350"
                     /inference="COORDINATES: protein motif:HMM:NF025070.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheC"
                     /protein_id="HLD40806.1"
                     /translation="MDKRLSLSQLDLLKEMGTIGAGRAATALSDLITKKVEITVPQVS
                     LIPLENISGLLADREKLFIVIDMEIEGDMLGRIFLLFPPEDAKHLSAGSLGLNEDQID
                     LKDEMFQSALKEFANILCGSYIAAMSDMAKLNIMISTPNLAIDMVGAILDFIFIQIAQ
                     YADEALYIKTNLKVSGVAIEGLFLFFPDAESLSKLFETLGLNE"
BASE COUNT          815 a          627 c          678 g          633 t
ORIGIN      
        1 gatccaggcc ggggcaaaag actttgtcac caagcctttc cagccttcca gggtagtgga
       61 gccaatcaac cgggtcatca agggctaagc aaaacttcaa aaatacagtg aacgataata
      121 atcttattga ggttgggatg ggggatatga agatggtttc cgcccccagg aggctgatta
      181 cccgggcctt aggctcctgc ctggggatta ctttttacag cccgcagata aagtccgggg
      241 caatggccca ccccatgctt ccggacatag acaaggccaa gatgaaatcc aatcccaacc
      301 gttatgttaa ctccgtaatc atccggaccc tggatgaaat ggaaaaactt ggcgtcttga
      361 aaaacggact ggagataaag atattcggcg gggcccatat gttcagcttt atcactgccg
      421 acagcctgct gaatgtgggg gaaaagaata ttgaggtagc caaagaactg ctgggtaaat
      481 taggccttaa gattattgcc gaagaggttg gcgggacttt tggaaggacc attgagttga
      541 acctggaaaa cggcaaggta ttcgtggata cggtttcctg ggggaggaaa gaagtctaga
      601 aaaggtaaaa ctaatatgat tgagaaaaag gttaaggttt tggtggtaga cgattcattc
      661 ctgatgcgca agattatttc cgacgccata aacagcgatc cggctttaga ggttgtctat
      721 aaagccaaaa acggccagga aggcctgcag aaaatattgg aattgaagcc ggacattgtc
      781 accttggaca tcaacctccc cattatgaac gggctctctg tccttcagga agtaatgaag
      841 aaacagccct gcaaagtgat aatgctttcc gcctacaccc gggaaggggc ggccgacact
      901 atgaaggccc tggagttagg ggccatagat ttcattgcca agccttccgg agagatttcc
      961 ttagacatat acaaactaaa agatgaaata acctccaaga taaagctcgc cgccaggata
     1021 aaagagagca aattcttaaa cacgctatcg gaagaatccg ccatccgcca tcccagagaa
     1081 aaggcgatag caatcaagaa attagtgata atcggggcct ccaccggcgg gcccaaggcg
     1141 gtcttagaga taatgcagga tatccccgcc ggcctgcagg ccgccttctt gattgtccag
     1201 catatgcctg ccggatttac caccaccttt gccgagaggc tatcctggca gtccaagcta
     1261 aaggccaaag aggcccagga aggcgatacg gtaatggcgg acaagatcct ggtggccccg
     1321 gcgggatatc atttgatttt ggagcaaaac ggcaaagaac tgaaaacaag gcttaaccag
     1381 gactcattag ttaattttgt ccgtccctca atagatgtaa cgatgtattc ggccgtagag
     1441 gcctttcacg gcaaagacat aatcgccgtg atcctcaccg gcatgggcaa ggacggttta
     1501 gatggctgcc gcaagataaa agaggccggg gggacaatcc tgatccagga tgaggccagc
     1561 tccgtggtct ggggtatgcc gggagcggtt tacgaggccg gacttagcga taaagtcctg
     1621 ccggtttcca aaatagccga agccatagta aaggagataa acagataatc ttataaaacc
     1681 ctaaatccaa aatactaaac tctaaataaa cccaaaacgc caaacataaa attcaaaaca
     1741 aagagtttta aaatttgagt ttttgatttt ggatttgttc agaatttagg gtttagaatt
     1801 tagaatttta tttaaaatta tggacaaacg attatcctta tcccagctgg acttactcaa
     1861 agaaatgggt actatcgggg ccggcagggc ggccaccgcc ctttccgacc tcattaccaa
     1921 gaaggttgaa attaccgttc cccaggtaag cctgatccct ttagaaaaca tctccggcct
     1981 cttagctgac cgggaaaagc tgttcatcgt cattgacatg gaaatagaag gggatatgct
     2041 gggacgcatc ttcctgcttt tcccgccgga agacgccaaa cacctctctg ccggttcctt
     2101 aggcttgaat gaagaccaga ttgacttaaa agacgagatg ttccaatcgg ccttaaagga
     2161 attcgccaat atcctctgcg gctcatatat cgcggctatg tccgacatgg ctaaactaaa
     2221 cattatgatc tccaccccga atttagctat agatatggtg ggggccatcc tggatttcat
     2281 ctttatccag attgcccaat acgccgacga ggccctttat atcaagacca atttaaaggt
     2341 aagcggggtg gccatagaag gcctgttttt attctttccg gacgcggaat cgttaagcaa
     2401 gctttttgaa acactgggtt taaacgaata aggaaaagcg gataaggtgg tcccttgcgt
     2461 aagcgctcgt aaatttctgc gaaatttact tcgcacgctt cgggattaat tcgcgcataa
     2521 acttatgagc gctcgctaaa gctcgctcca taagtttagc gctcattaag gaggaacaac
     2581 taatggccag gatgcctaaa aaagaatcgg aacagtaccg caagatgtta ttaaagatta
     2641 aggaaaggct caccgaagac atcaagcata tctcccagga taccttgagc aaatcccaga
     2701 aagaggcctg cggagatatc tccgggtata ccctgcatat ggcggatgtg gct
//
LOCUS       DATDUB010000069         3044 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1213352, whole genome shotgun sequence.
ACCESSION   DATDUB010000069 DATDUB010000000
VERSION     DATDUB010000069.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3044)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3044)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3044
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1213352"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2698
                     /gene="ileS"
                     /locus_tag="VJA84_01355"
     CDS             <1..2698
                     /gene="ileS"
                     /locus_tag="VJA84_01355"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: protein motif:HMM:TIGR00392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004822 - isoleucine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006428 - isoleucyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HLD40807.1"
                     /translation="LNEPKTLQFWKDMDIYSKIRGASSSRPKYVLHDGPPYANGNIHI
                     GHALNKILKDIIIRFKTMRGFDSPYVPGWDCHGLPVEHQLFKDLKISKEQISQLDFRE
                     KAYDYAMRFVNIQKEEFKRLGIFGDWERPYLTLDKRYEYEIVRALGELVKKGFVYRGL
                     KPVNWCASCETALAEAEVDYEDKTSPSIYIKFKLLPSQRLSTIDCRLSTDFYLVIWTT
                     TPWTLYANAAVAAHPDISYAFVHTAKGNLIVSKDLLAAIAKDMEADIDEFKIEKIVKG
                     RDLEGLIYEHPFLKDGHIRKVVLADYVSSEEGTGLVHTAPGHGQEDYFTGLKYGLPIL
                     MPVDKKGRFDNTVPELNGEFVLSANKAIVDNLESLGALLFFGQIQHSYPHCWRCKNPI
                     IFRATKQWFIKIEHNNLRKEILKKIKEEIVFVPEAGRERIRSMIELRPDWCLSRQRYW
                     GVPIPALRCLDCNEETLSPEVIENFSAKVLESGSDAWFSQESCAFIPKGFKCPHCQGD
                     KFSRAEDILDVWFDSGVSHRAVLMNSADMEFPASLYLEGSDQHRGWFQASLIPAMAIE
                     GKAPFKAALTHGFVVDGEGKKMSKSQGNVISPQEIIKEYGADILRLWAASSNYNEDVR
                     VSKDILSRLTDAYRKIRNTMRFLLGNISDFSPESDAVGLDKMLEVDRFNLSCAYSLLE
                     KCGKGYEAFEFYKVYQEIYQFCILNMSNFYLDILKDRLYTARKDGLSRRSAQTALYQI
                     IIILVKASAPILTFTSEELWQHLKSKEAESAHLSRWPREFKYIDAELENKWYNLLQFR
                     TLVLKAIEEKRSAGEIGSSLEAGLIIGLDENNRFLRDFDNLNEVFIVSAVSLEDSKEA
                     YIKVEKAKGEKCPRCWNYSRETGKDERHPDLCPKCLDAISEN"
BASE COUNT          800 a          658 c          803 g          783 t
ORIGIN      
        1 ccttaatgag cccaagaccc tgcagttttg gaaggatatg gatatctatt ccaagatccg
       61 cggggcctct tccagccggc caaagtatgt cctgcacgac ggccctcctt atgccaacgg
      121 caatatccac atcggccatg ccttaaacaa gatccttaaa gacattatca tccgctttaa
      181 gactatgcgg ggttttgatt ctccttatgt ccccgggtgg gactgccacg gcctgccggt
      241 ggaacatcaa ttgtttaaag acctgaagat cagcaaggag cagatatccc aattagattt
      301 ccgcgaaaag gcctatgact acgcgatgag gtttgtcaat atccagaaag aggagtttaa
      361 gcggctgggc attttcgggg attgggagag gccttattta actttagaca agaggtatga
      421 atatgagatt gtccgggccc tgggagaact ggtaaagaaa ggttttgtct accgcgggtt
      481 aaagccggtg aactggtgcg cctcctgcga gactgccctg gctgaagccg aggtggatta
      541 cgaagacaaa acctcgcctt caatatatat caagtttaaa cttcttccca gccaaagact
      601 atcgactatc gactgtcgac tgtcgactga tttctatctg gttatctgga ccaccactcc
      661 ctggaccctt tatgccaatg ccgcggtggc cgcgcatccg gatatctcat atgcctttgt
      721 gcatacggct aaaggcaatc taattgtctc taaggatttg ctcgcggcaa tagctaagga
      781 tatggaggcg gatatcgatg aattcaagat agaaaaaata gtcaaaggaa gggatttgga
      841 aggattgatt tatgagcacc catttttaaa agacggacat atccgcaagg tggtcctggc
      901 ggattatgtc tcatccgaag agggcactgg gctggtgcat accgctcccg gccatggcca
      961 ggaagattat ttcaccggat taaaatacgg cctgcccatc cttatgccgg tggataaaaa
     1021 ggggagattt gacaatacgg tcccggagct aaatggcgag tttgtgcttt cggccaacaa
     1081 ggcgattgtg gataacctgg agagtttggg cgcgcttttg tttttcgggc agattcaaca
     1141 ttcctatccc cattgctggc gctgtaagaa tcccataatc ttccgggcca ctaagcagtg
     1201 gtttattaag attgagcaca ataatttaag aaaagagata ttaaagaaga ttaaggaaga
     1261 gattgtcttt gtgcctgaag ccggcaggga aaggatccgt tcaatgatag agctgcgccc
     1321 ggactggtgc ctttcccggc agaggtattg gggggtgccg ataccggcct tgcgctgttt
     1381 ggattgcaat gaagagacgc tttctccgga ggtgattgag aactttagcg ctaaggtttt
     1441 ggagagcgga agcgatgcct ggtttagcca ggaatcttgc gcctttatcc ccaaaggatt
     1501 taaatgcccc cattgccagg gggataagtt ctcccgcgcg gaggatatct tagatgtctg
     1561 gtttgattcc ggggtcagcc atcgggcagt gctgatgaat agcgcggata tggaatttcc
     1621 ggcctcgctt tatttggagg gttcagacca gcaccggggg tggtttcagg cttccttaat
     1681 cccggctatg gctatagagg ggaaggcccc ttttaaggcc gcccttaccc atggctttgt
     1741 ggtagacggg gaagggaaaa agatgtccaa gtcccagggc aatgtcattt ctccccagga
     1801 gataattaag gaatacgggg cggatatctt aaggctttgg gcggcatcca gcaattacaa
     1861 tgaggatgtg cgggtatcta aagatatctt gtcccggctc accgatgcct accgtaaaat
     1921 ccgcaacact atgaggttcc ttctgggaaa tatctcggat ttttctccgg aaagtgatgc
     1981 cgtaggctta gataagatgc ttgaggttga ccggtttaat ctctcctgcg cctattcctt
     2041 gttggaaaag tgcgggaaag gttatgaggc tttcgagttt tataaggtct atcaggagat
     2101 ttatcaattc tgcatcctaa atatgtctaa tttttacttg gatatattaa aggaccggct
     2161 ctataccgcc aggaaagacg gccttagccg ccgcagcgcc cagaccgctt tataccagat
     2221 aataattata ttagttaagg cgtctgcccc gatactcacc tttacctcgg aggagctttg
     2281 gcagcatcta aagtcaaagg aggctgaaag cgcgcacctg tcgcgctggc cgcgggaatt
     2341 taaatatatt gatgcggaat tggaaaataa atggtataat cttcttcaat ttaggacgct
     2401 tgttttgaag gctattgaag aaaagcgttc cgcgggagag attggcagtt ccctggaggc
     2461 cgggctgatt atcggcctgg atgaaaacaa tagattcttg agagactttg ataatttaaa
     2521 cgaggtcttt atcgtttctg ccgtgtcttt agaagattct aaggaggctt atataaaggt
     2581 ggaaaaggca aaaggggaga aatgcccgcg ctgttggaac tactcgcggg aaacaggcaa
     2641 ggatgaaaga catcctgatt tatgtcccaa gtgcttagac gcgattagcg aaaattaacg
     2701 attgtatatc taaggagttg gaatgattac tccgcctcgt aagctgaggc aaaattttct
     2761 tcgataattt tgcctcactc ggcggagtta attcgcagac ggcctcacgg cctacacttt
     2821 atgcctgcct gcaggcaggc ataaagtgtc tgctcattaa ggaggaatca ctaatggcca
     2881 ggatgcttaa aaaagaatca gagcagtacc gcaagatgtt attaaagatt aaggaaaggc
     2941 tcaccgaaga catcaagcat atctcccagg ataccttgag caaatcccag aaagaggcct
     3001 gcggagatat ctccgggtat accctgcata tggcggatgt ggct
//
LOCUS       DATDUB010000070         2973 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_207718, whole genome shotgun sequence.
ACCESSION   DATDUB010000070 DATDUB010000000
VERSION     DATDUB010000070.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2973)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2973)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2973
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_207718"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..374)
                     /locus_tag="VJA84_01360"
     CDS             complement(<1..374)
                     /locus_tag="VJA84_01360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40808.1"
                     /translation="MKGLSSKEPYDKQTYFSQYRDSFSKGEYNLKEQVYFPSGRSVRN
                     YISGGVVVSSAITIDGAKTKNPDWPFLEGVVFEGGNKPLAIAASSVVNKAEDTTRREK
                     LNEIYNQTCLNYDIVSDGNTIS"
     gene            complement(451..1332)
                     /locus_tag="VJA84_01365"
     CDS             complement(451..1332)
                     /locus_tag="VJA84_01365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40809.1"
                     /translation="MTIRLISLILSLSLFCQQAGIVYASGELNLADYLSSMRNAAVQP
                     DIFQPARLRYISYDSRNSDFKLLLDKGDIKLDEFSSSPNSSTPKLNDATRELFNYFLI
                     GLALPNDTFWVNLRPDAPENIIDPLLEKTDIGKIFLEADLQLKKDTAGWTSPQTKEGK
                     EYWDKLYKKAEELFGSENITIPTITWPWIVPNEVIVREIEDSAYIYKATLKVMLEEDY
                     LNNQKTEKPKDQKTNYNFSDPRLKDLNEYSTQLLREKIIPRLTKEVNSSKRYAKLRQL
                     YYSLILSPLVQAEVWQS"
     gene            complement(1412..2146)
                     /locus_tag="VJA84_01370"
     CDS             complement(1412..2146)
                     /locus_tag="VJA84_01370"
                     /inference="COORDINATES: protein motif:HMM:NF024853.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin domain-containing protein"
                     /protein_id="HLD40810.1"
                     /translation="MKKVILGLGLIVALGFVVSAGLSQHKKMFHSQKKLELRLGELEG
                     QVKGLNVFLKKIEKEFDNLQGKEDYAKVYDIDIGDSAVLGPKDAPVTIVEFVDFQCPY
                     CARFHPLVLEALKAYSGKVRAVIKNYPLPFHKEALPAAKAAFAAGEQGKYWEMANAIL
                     SDNSNLNDKLYRGLAKKIGLNTQKFSSDLKEKDGLWQEYVQKDIALGNRIDVRGTPTI
                     YINGRKTQARNIAGFKEEIESVLRKK"
     gene            complement(2151..>2973)
                     /locus_tag="VJA84_01375"
     CDS             complement(2151..>2973)
                     /locus_tag="VJA84_01375"
                     /inference="COORDINATES: protein motif:HMM:TIGR04085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SPASM domain-containing protein"
                     /protein_id="HLD40811.1"
                     /translation="SLITPDTAARLKQSGIRLIAVSLYGSNALAHDAFCGQPGAFEKS
                     LQGIRNLKDAGLGLQINTTITRKNLGELEAIGKLALDIGGLSYHIFFLVPVGRGLGME
                     GDEITPREYEDAFNRLYDFKSKFPIHIKPTCAPHYYRVARQREAKGVVGTEHCSVPTK
                     AEMASSSSEQPFHEMTKGCLAGQGVCFISYKGEVFGCGYLPVAAGFLREQDFKTIWFE
                     SELFKILRDESKLKGRCGICEFKKVCSGCRARAYAATGDYLEEEPYCVYQPLKGR"
BASE COUNT          747 a          785 c          626 g          815 t
ORIGIN      
        1 ctcgaaatag tgtttccgtc agagacaatg tcataattta gacatgtctg attgtatatc
       61 tcattcaact tttcccggcg cgttgtatct tcagccttat tcaccaccga agaggcggca
      121 atggctaatg gcttatttcc gccctcaaaa accactccct ctaagaacgg ccaatccgga
      181 tttttagtct tagcgccatc tatcgtaatt gccgaagaaa ccaccacccc accgctgata
      241 taatttctaa cactcctgcc cgaggggaag taaacttgct ctttcagatt atattcgcct
      301 ttgctgaaag aatcccggta ttggctgaaa taggtttgct tgtcataagg ctccttggaa
      361 gacagcccct tcaaattccg ggaatcaatc agactaatgt aattatctcc agatgagctg
      421 gtgctctggc gctctggcgc tccagcactc ctaagactgc caaacctctg cttgaaccag
      481 cggggatagt atgagcgagt aatacagctg ccttaacttg gcgtatcttt ttgaggaatt
      541 tacctctttg gtcagcctgg ggattatctt ctctctcaag agttgagtgg agtattcatt
      601 taagtccttt agcctggggt cgctaaaatt ataatttgtt ttttggtctt ttggtttttc
      661 cgttttttgg ttatttaaat agtcttcctc caacatcacc tttaaggtgg ccttgtagat
      721 gtaggccgaa tcctcgatct ctctcacaat cacctcattg ggcactatcc agggccaggt
      781 gatggtgggg atggtgatgt tttcgctgcc gaacaattct tcggcctttt tatacagctt
      841 atcccaatat tccttgcctt ctttggtctg gggagaggtc cagccggcgg tatccttttt
      901 taactgcagg tcggcctcaa ggaatatctt accgatatct gtcttttcca aaagcgggtc
      961 tatgatattc tccggggcat ccggcctcaa gttcacccag aaggtatcat taggcagggc
     1021 caggccgatc aaaaaatagt taaagagttc ccgggtagcg tcgtttagtt tgggagttga
     1081 ggagtttggg gagcttgaga attcatcgag tttaatgtca cctttgtcta aaagcagttt
     1141 gaaatcgctg tttcggctat cataagagat ataccttagc cgcgccggct gaaagatatc
     1201 cggctggact gccgcattgc gcattgagct aagataatca gccagattca gctcgccgga
     1261 ggcgtaaaca attcccgcct gctggcagaa taaactcaag gacaaaatta aagatatcag
     1321 cctgatagtc ataacacctt atcgcactac atattttaaa agtttataat aagtatacca
     1381 caaaaagccc ctcctgacaa gatacggggg cctatttttt ccttaaaaca gactcaatct
     1441 cttccttaaa gcctgcgata ttcctggcct gggtcttgcg gccgttgatg tagatagtcg
     1501 gagtgccccg gacatctatc ctgttgccca aagcaatgtc cttctggaca tactcctgcc
     1561 aaaggccgtc tttttcttta agatcgcttg agaatttctg cgtattcaaa ccaattttct
     1621 tagccagtcc gcgataaagc ttatcgttca agttagaatt atcgcttaag atggcgttag
     1681 ccatttccca atatttcccc tgctctccgg cggcaaaggc ggccttggcc gcgggaagcg
     1741 cctccttatg gaaaggcagg ggataattct tgattaccgc cctgaccttg ccggaatagg
     1801 ccttgagcgc ctctaaaacc aaaggatgga acctggcgca gtaagggcac tggaaatcca
     1861 caaactccac aatagttacc ggggcgtctt tggggcccaa gacagccgaa tccccgatat
     1921 ctatatcata gaccttggca taatcctcct tgccctgaag attgtcaaat tccttctcaa
     1981 tcttcttcag gaaaacattc agccccttga cctgtccctc cagctcccct aaacgcagtt
     2041 ccagcttctt ttgggaatgg aacatctttt tgtgttgaga caaccccgcg gaaacaacaa
     2101 accccaaagc cacaatcaaa cctaatccca aaatcacttt tttcatcttt tcatctccct
     2161 ttcaacggct gatacacgca atacggttcc tcttctaaat aatctccggt tgccgcgtag
     2221 gcccgggccc gacagccgga acagaccttc ttaaactcgc aaattccgca cctgcctttt
     2281 aatttagact catccctcaa tatcttaaat aactcgctct caaaccatat cgtcttaaaa
     2341 tcctgttcac gcaagaaacc ggcggctacc ggcagatacc cacagccaaa gacctcgccc
     2401 ttataagaaa taaaacagac cccctgcccg gccagacagc ccttggtcat ctcgtgaaat
     2461 ggctgttcgg aggacgacga agccatttct gccttcgtag ggacagaaca atgttctgtc
     2521 cctacaacgc ctttcgcctc cctttgccgg gctacccggt aataatgcgg ggcgcaggtg
     2581 ggcttgatat ggatagggaa ttttgattta aaatcataca gccggttaaa ggcatcctca
     2641 tattcccggg gggtaatctc atctccctcc atccccaagc cccggcctac cggaaccaga
     2701 aagaatatat gatacgacaa tcccccaata tctaaggcca gctttccgat ggcctctaac
     2761 tcccccaaat tcttcctggt aatagtggta tttatctgca gacccaggcc agcgtctttt
     2821 agattccgga ttccctgcaa agacttttca aaggccccgg gctggccgca aaaggcatcg
     2881 tgggccaagg catttgaacc ataaagggaa accgcgatta accttattcc gctttgcttt
     2941 aatctcgcgg cagtatcagg ggtaatcaat gag
//
LOCUS       DATDUB010000071         2188 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_704066, whole genome shotgun sequence.
ACCESSION   DATDUB010000071 DATDUB010000000
VERSION     DATDUB010000071.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2188)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2188)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2188
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_704066"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..585
                     /gene="ruvA"
                     /locus_tag="VJA84_01380"
     CDS             <1..585
                     /gene="ruvA"
                     /locus_tag="VJA84_01380"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: protein motif:HMM:TIGR00084.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009379 - Holliday junction helicase
                     complex [Evidence IEA];
                     GO_function: GO:0009378 - four-way junction helicase
                     activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HLD40812.1"
                     /translation="NSLFIDVAGICYEVFVPTAIMQRLDKQEGVDGCIRLVTYHYHNV
                     EPSRSVPVLIGFLNEIEKDFFQRFISVSGIGPRAALRALAAPFSVIAKAIDEGDTAFL
                     QSLPGIGTQRAKEIVAKLQGKVGKYGLIQDELARTKEGPVSDIESEAVEVLVQLQYKK
                     PEAKEMVRLAKERSSQIKSTEDLLNQVYKQKARK"
     gene            582..1250
                     /gene="scpB"
                     /locus_tag="VJA84_01385"
     CDS             582..1250
                     /gene="scpB"
                     /locus_tag="VJA84_01385"
                     /inference="COORDINATES: protein motif:HMM:TIGR00281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SMC-Scp complex subunit ScpB"
                     /protein_id="HLD40813.1"
                     /translation="MSDTQSLNPNAGIDPGICPNIKAAIEALLFVSEKPLSPQQIKIA
                     FKDLEADKIKETILELKSDYEHGSRGLRIEEVAGGFQMVTSLEAAGVLKEYFKQRDAQ
                     RLSMPALETLSIITYKQPVTRLDIESLRGVNVDGVIKSLLEKNLIRITGKKDIPGKPF
                     VYGTTRQFLEYFGLNSLDDLPKVEEFTKSSGPASVLLTLSNRTPEFIEGEQKSEPEQL
                     EKTD"
     gene            1219..>2188
                     /gene="pheA"
                     /locus_tag="VJA84_01390"
     CDS             1219..>2188
                     /gene="pheA"
                     /locus_tag="VJA84_01390"
                     /EC_number="4.2.1.51"
                     /inference="COORDINATES: protein motif:HMM:NF008865.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004664 - prephenate dehydratase activity
                     [Evidence IEA];
                     GO_process: GO:0009094 - L-phenylalanine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydratase"
                     /protein_id="HLD40814.1"
                     /translation="MNLNNLRKQIDRLDEDIVNRLNRRLEIGLRIRNLKRKLGKGVYS
                     PEREYAVFKRLKDIPRKYLSDPALEAIYREVMSSALGLERPLKISYLGPQATFTHMAA
                     LKRFGRQVEYLPCGAISDVSKEVEKGNADYGVVPVENSIEGAVTHTMDMLIDSDLKIC
                     SQVVMSVSHHLLSNSPKEKIKKIYSNPQVFAQCRLWLQQNYHCAELIDASSTAKAAQT
                     ARKEKGSACIASILAASVYNLKVVALNIEDSPNNMTRFLVVGRESAGATGDDKTSIVF
                     SIKDKVGALHDMLIPFKKYRINLTKIESRPSKKKAWDYYFFMDLEGH"
BASE COUNT          590 a          490 c          586 g          522 t
ORIGIN      
        1 aattcccttt ttattgatgt ggccgggatt tgttatgagg tttttgtccc tacggccatt
       61 atgcaaaggc tggataaaca ggaaggagtt gacggctgta tccgcctggt aacctatcat
      121 taccataatg ttgagccttc gcgctccgtg ccggtattga ttgggttctt gaatgagata
      181 gaaaaggatt tttttcagcg ctttatctcg gtatccggta tcgggccgag ggccgctctg
      241 cgggccctgg ccgcgccatt ttcggtaatc gccaaggcta tagatgaagg ggacaccgcg
      301 tttttacagt ctctccccgg tatcgggacg cagagggcca aagagatagt ggccaagctc
      361 cagggaaaag taggcaaata cgggcttatt caggatgagc tcgccaggac taaagaaggg
      421 ccggtaagcg atattgagtc agaggccgtg gaggtcttag tccaactgca atataaaaaa
      481 ccggaagcta aagaaatggt gcgcttagct aaggaacgct caagccagat taaaagcacc
      541 gaggaccttt tgaaccaggt ctacaagcag aaggcaagaa aatgagcgat acgcaatcat
      601 taaatcctaa tgcggggata gaccccggta tctgtccgaa tataaaggcc gcgattgagg
      661 cccttttgtt tgtcagcgag aagccgctaa gcccccaaca gataaagatt gcctttaagg
      721 acctggaggc ggataagata aaagaaacca tactggagct caagagcgat tatgaacacg
      781 gctctcgagg ccttaggatt gaagaggtgg ccgggggatt ccagatggtt acttccctgg
      841 aggctgccgg ggtcttaaaa gaatacttta aacagcggga tgcccaacgg ttgagtatgc
      901 cggctttgga gaccttatct ataattacct ataaacagcc ggtgacccgc ttagacattg
      961 aatccttaag aggggtgaat gtggacgggg taatcaaaag ccttttagag aagaacctga
     1021 tccggattac cggcaagaaa gatatcccgg gaaagccttt tgtctatggc actacccggc
     1081 agttcctgga atatttcggc ttgaattcgc tggatgacct gcctaaggtg gaggaattta
     1141 ccaaaagctc aggccccgcc agcgtcttgc ttaccttaag caaccggacc ccggaattta
     1201 tagaaggaga acaaaaaagt gaacctgaac aacttgagaa aacagattga ccggctggat
     1261 gaggatattg taaacagatt gaaccggcgg ctggagattg gcttaagaat ccgcaatctt
     1321 aagagaaaat taggcaaagg ggtctattcc ccggaacggg aatacgcggt ttttaagaga
     1381 ttaaaggaca tcccccgtaa atatctttcc gatccggccc tggaggcgat ttatcgggag
     1441 gtaatgtcca gcgctttagg gttagagcgg cctttaaaga tttcctatct tgggccccag
     1501 gctaccttta cccatatggc cgctcttaag aggtttggcc ggcaggtgga gtatctgcct
     1561 tgcggggcaa tcagcgatgt ttccaaggaa gtggagaagg gcaatgccga ttacggggta
     1621 gtgccggtgg aaaactccat tgaaggcgcg gtgacccata ctatggatat gcttattgat
     1681 tccgacctga agatttgttc tcaagtggtg atgagcgttt cgcatcacct tttgagtaat
     1741 tctcctaaag aaaagatcaa aaagatctat tctaatcccc aggtctttgc tcagtgccgg
     1801 ctctggctcc agcagaacta tcattgcgcc gaacttattg atgcctcaag caccgccaag
     1861 gccgcccaga ccgcgcggaa ggaaaaaggc tcggcctgca ttgcctctat tttagccgcc
     1921 tccgtctata atctgaaggt ggttgccctg aatattgagg attcacctaa caatatgacc
     1981 cgtttcttag tggtgggcag ggagagcgcc ggagctaccg gggacgataa aacctctata
     2041 gtcttttcca ttaaggataa ggtcggggcc ctgcacgata tgctgatccc tttcaagaaa
     2101 taccggataa acctgaccaa gattgagtcc cggccttcta agaaaaaggc ctgggattat
     2161 tattttttca tggacctgga aggccata
//
LOCUS       DATDUB010000072         2466 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1215679, whole genome shotgun sequence.
ACCESSION   DATDUB010000072 DATDUB010000000
VERSION     DATDUB010000072.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2466)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2466)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2466
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1215679"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(150..797)
                     /locus_tag="VJA84_01395"
     CDS             complement(150..797)
                     /locus_tag="VJA84_01395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008870847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III domain-containing protein"
                     /protein_id="HLD40815.1"
                     /translation="MNNNHLKEKIGDIYQKLYRSFGPQSWWPGDTPFEVIAGAILTQN
                     TNWQNVAKAIDNLKKAKVLTPKKLHSLPQPRLAELIRPSGYFNIKATRLKEFLNFLFK
                     NYGGSLKKMFSRPLEDLRKEILSVKGIGPETADSILLYAGGLPVFVVDAYTKRIFSRQ
                     KLLSEEADYHQVQELFTRSLKRDVRLYNEYHALIVRLGKDFCKKTKPRCEVCPIK"
     gene            complement(790..>2466)
                     /locus_tag="VJA84_01400"
     CDS             complement(790..>2466)
                     /locus_tag="VJA84_01400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40816.1"
                     /translation="GHSQVLIGLRYEDIQAKDLSRITRVAYAKAFFPRIALAGILVLL
                     LGLAAVSWNNFRLALANKKLIEEVVDVLKDSQSLRQELRKIRQEKGSLDEKLTQAQEK
                     IQDGQAQLRQKAEELKLIHKDNVEELKRKEEEIDKFKAMIKVLEQDTAGIMNKIGDLS
                     LKEEKAEIKLSRISEKKVVLEKANFEKMYQWVQLHQNPRTGLIESFEGDGELSGVAFT
                     YDQALAVITFSYFQDSSLARKILDFYQFQARKEQGFYNGYFVSSGEVSEFTVHSGPNL
                     WLGIAALQYARLSGDKSYLPLARDIAGWMMKLQKEDSSGGLKGGPETSWYSTEHNLDG
                     FAFFNMLYELEPEEAYKKAAQDILSWLKNNAYDSPAVPVKRGRGDATIATDTYAWSIA
                     SLGGEKLEELGMNPEEIMGFAQEHCGVETDFLRPNGEYVRVKGFDFAKQEHLARGGVI
                     SCEWTAQMALSYKVLSRYFASKGDAGKESLYREKADEYLEELTKMIIASPSRIGQGQG
                     CLPYASSDFVDTGHGWRTPKGKNTGSLSSTIYAIFAYYGFNPLELDGRYE"
BASE COUNT          582 a          670 c          541 g          673 t
ORIGIN      
        1 agcattcaca ataaaccaag tcaaggtttc tcttgcctat cactcaatgc gtcagtgaat
       61 aggggaaact cgcgctgacc ctactatttt ttcgccgaaa atggattgtt tgtcaacaaa
      121 attctgtact tagtctggcc cgtcatttct cattttatgg ggcatacttc acacctgggc
      181 ttggtctttt tgcagaaatc cttgcctaaa cgcacgataa gggcgtggta ttcgttgtat
      241 aatcggacat ctcttttaag gctgcgggtg aataattcct ggacttgatg ataatccgcc
      301 tcctcgctta aaagtttctg gcgggagaag attcttttgg tataggcgtc caccacgaat
      361 accggcaggc ctccggcata aagcaatatg gagtcggcgg tttccgggcc gatgcctttt
      421 acgctcaaga tttcctttct taagtcttct aaagggcggc taaacatttt cttcaggctt
      481 ccgccgtaat tcttaaataa aaaattcagg aattctttca gccgtgtggc cttgatatta
      541 aaataacccg aaggccggat aagttcagcc aggcgcggct ggggcaagga atgaagtttc
      601 ttaggagtca ataccttggc ctttttcaga ttatcaatgg ccttggcaac attctgccag
      661 ttggtattct gggtaaggat ggctcccgca atcacctcaa aaggcgtatc ccccggccac
      721 caggactggg ggccgaaact gcgatagagc ttctgataaa tatcccctat cttttctttc
      781 agatggttat tattcatagc ggccgtctaa ctctaaaggg ttaaacccgt aataggcaaa
      841 aatagcgtag atggtggaag aaagagaacc cgtatttttg cctttcggcg tcctccatcc
      901 atgtccggta tccacaaaat ccgatgaggc ataaggaaga catccctggc cctggccgat
      961 gcgggaaggg ctggcaataa tcatcttggt caactcctcc agatattcat ccgccttttc
     1021 ccggtaaaga gactccttcc cggcatcacc cttggaagca aaataacggc taaggacctt
     1081 ataagaaagc gccatctggg ccgtccactc gcaggaaatc accccgccgc gggccaaatg
     1141 ctcctgtttg gcaaagtcaa agcccttaac ccggacatac tctccgttag gccttaaaaa
     1201 gtcggtttcc actccgcaat gctcctgggc aaaacccatt atctcttcag gattcatccc
     1261 cagctcttct aacttttccc cgcccaggct ggcaatggac caggcatagg tgtcggtggc
     1321 gatagtggca tcgccccggc cgcgcttcac cggcactgcc gggctgtcat aggcgttatt
     1381 tttcagccag cttaagatgt cttgcgcggc tttcttatag gcctcctccg gctcaagctc
     1441 ataaagcata ttaaaaaagg cgaaaccatc aagattgtgt tcggtggaat accaggaagt
     1501 ttccgggccg ccctttaatc cgccggagga atcctccttt tgcagtttca tcatccatcc
     1561 ggcaatgtcc cgggccagcg gcagatagct tttgtccccg gagagccggg catactgcag
     1621 ggcggctatc cccagccaga gattggggcc gctgtgcacg gtaaattccg agacctcgcc
     1681 cgatgaaaca aaataaccgt tataaaaccc ctgctctttc ctggcctgga attggtaaaa
     1741 atccaggatt ttccgggcca aggaagagtc ttgaaaataa ctgaaagtta tcactgccag
     1801 ggcctggtcg taagtgaagg cgaccccgct taattccccg tcgccttcaa agctttcaat
     1861 caaccctgtg cgcgggttct ggtgcagttg gacccactga tacatcttct caaaatttgc
     1921 cttttccaaa accacctttt tctcgcttat ccggcttaat ttaatctccg ccttttcttc
     1981 cttcagcgat aaatccccga ttttattcat tatcccggcg gtgtcctgct ctaaaacctt
     2041 aatcatcgct ttaaacttat caatctcttc ctcttttctt tttagctctt ccacattatc
     2101 tttatggatc agcttcagtt cctcggcctt ttgccttaac tgggcctggc cgtcctgtat
     2161 tttttcctgg gcttgggtaa gtttttcatc taaagagccc ttctcctggc ggatctttcg
     2221 cagttcctgg cggaggcttt gagaatcctt taaaacatca accacttctt caatcaattt
     2281 tttattggcc aaggccagcc gaaaattatt ccagctcacc gccgccagcc ctaaaagcag
     2341 gaccagtatc ccggccaggg ctatccgcgg gaaaaaggcc ttggcataag ccacccgggt
     2401 aatccggctt aaatccttgg cctgaatatc ttcatacctt aaccctatca aaacctggct
     2461 gtggcc
//
LOCUS       DATDUB010000073         3889 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_45870, whole genome shotgun sequence.
ACCESSION   DATDUB010000073 DATDUB010000000
VERSION     DATDUB010000073.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3889)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3889)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3889
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_45870"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..873
                     /locus_tag="VJA84_01405"
     CDS             <1..873
                     /locus_tag="VJA84_01405"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HLD40817.1"
                     /translation="IHGIIEFSNYCRQNCLYCGIRKDNANLTRYRMSEEEIIHRAEYA
                     VKELKFKALVLQSGEDLWYDQERLFNIVSGIMRESPALLVLSLGERDMALYQRLYQAG
                     ARGALVRFETSNPDLYEKYRPGHKLEERLKLINDLREMGYLALTGFLTGLPGETEADT
                     LNDIELTNSLGPEMFSFGPFIPHPDTPLKDAVSPSLESALNTIARARIRYPESRILAT
                     TALETLDKEKGAKAAFLAGANSLMVNLTPEKYRNLYDIYPRRSGSDEDVRERIEDVLS
                     LLVYIGRAPTHLGM"
     gene            998..1198
                     /gene="tatA"
                     /locus_tag="VJA84_01410"
     CDS             998..1198
                     /gene="tatA"
                     /locus_tag="VJA84_01410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007294095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase TatA/TatE family
                     subunit"
                     /protein_id="HLD40818.1"
                     /translation="MFGLGTPELIWIFLILLLLFGAAKLPGLGKAIGKTISEFKKGIK
                     DTDSEPAKEEKKEEKPQSSDKK"
     gene            1198..1914
                     /gene="tatC"
                     /locus_tag="VJA84_01415"
     CDS             1198..1914
                     /gene="tatC"
                     /locus_tag="VJA84_01415"
                     /inference="COORDINATES: protein motif:HMM:TIGR00945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatC"
                     /protein_id="HLD40819.1"
                     /translation="MPEKELTLVGHLDELRKRLIYCLVPLAIAAAVSLSFARPVLAFL
                     RFPSAGLIRKLAFFSPQEVAVVYTQISLFTALVLCLPIIFYHLWKFISPALEEKQKVY
                     ISAFIFWASMAFLCGAVFGYLCLAPLSLKFLMGLAGSDLEPVISLSKYISFILAILLC
                     SGAAFETPVLVWLLNRMGIVNHKFLRQKRRYVIAGIFIVSAIITPTTDPFNMTLLALP
                     MIVLYEISIWICRWSKKPGQ"
     gene            1890..2483
                     /locus_tag="VJA84_01420"
     CDS             1890..2483
                     /locus_tag="VJA84_01420"
                     /EC_number="2.7.7.77"
                     /inference="COORDINATES: protein motif:HMM:NF024214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0061603 - molybdenum cofactor
                     guanylyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase"
                     /protein_id="HLD40820.1"
                     /translation="MEQETGAIILAGGKNSRMAGEDKAFLEVEGRPIILRIIGTLKPL
                     VKEIIIVTNTPEKYDNFKVKLVRDESPGMGPLMGIYSGLKASSCEHNFITACDTPFLS
                     AALIEYMIKIRDNYDLLAPRIEGKYHPLFALYGKNCLSVIRKALEEGRLNVRGIFPEL
                     NCRFISRQEAERFDKDLLSLTNINTRLELEKARGTKA"
     gene            2483..>3889
                     /locus_tag="VJA84_01425"
     CDS             2483..>3889
                     /locus_tag="VJA84_01425"
                     /inference="COORDINATES: protein motif:HMM:NF012602.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HLD40821.1"
                     /translation="MVKRVLTTCPYCGVGCNFYLDVRDGRIAGIIPSKSNSVSKGRLC
                     VKGWHAHEPIQHPDRLKKPLIKENGKFKEVSWDFVLDYVAARLKEIKDKYGPDSLAVC
                     TSARCTNEENFLMMKFARAVLGTNNVDHCARTCHSATVSGLNQSFGSGASTNSYDELP
                     FMDCILIIGSNPTEAHPIAGWRVRTAIDNGAKIIVCDPRKILPAEDASVFIQQFPGSD
                     IALINAMINYIVTENLHDKEFIQQRTEGFNELWEAVKDCSPESVKDITGVEPALIKKA
                     AKLYAASKKACIMYSLGMTEHTVGTDNVIAMANLAMVCGQVGKEFSGIYPMRGQNNVQ
                     GACDIGALQNVYSGYQPVTDEKARKKFEAAWGVGLPKEKGLTLTDMMYKAIEGKLKCF
                     YIIGEDQIRTDPNSRWIEKALDSLEFLVVQEIFMSDTAKKADVVLPGASFAEKEGTFT
                     CAERRFQRVRKAIEPVAGK"
BASE COUNT          962 a          900 c         1049 g          978 t
ORIGIN      
        1 atccacggaa taatagaatt ctccaattac tgccgccaaa actgcctcta ctgcggaatc
       61 cgtaaggata acgccaatct tacccgttac cggatgagcg aggaggaaat aatccataga
      121 gctgaatacg cggtcaagga acttaaattc aaggccctgg ttttacagtc cggggaagac
      181 ctctggtatg atcaggaaag gctttttaat atcgtatccg ggattatgcg ggaatctccg
      241 gcgcttttgg ttttaagcct gggggaaagg gatatggctc tttaccagag attatatcag
      301 gccggggcca ggggggccct ggtgcgtttt gagaccagta acccggattt atatgaaaaa
      361 taccggccgg ggcataagtt agaggagcgg cttaaattga ttaatgatct tcgggagatg
      421 ggatatttgg cgcttaccgg tttcctgacc ggactgccgg gcgaaaccga ggcggataca
      481 cttaatgata ttgagttgac caattcttta ggcccggaga tgttttcttt cgggccgttt
      541 atcccccatc cggacacccc gttaaaggat gctgtttctc cttccctgga gtcggcgctg
      601 aacactatcg cccgcgccag gatccgctat ccggagtccc ggatattggc taccaccgcg
      661 ctagaaaccc tggacaagga aaagggggcc aaagccgcct tcctggccgg ggccaattct
      721 ttgatggtca accttacccc ggaaaaatac cgcaatctct atgatatcta tccccggcgc
      781 tccggcagcg acgaggatgt ccgcgaaagg atagaggatg tcttaagcct cttagtctac
      841 ataggccgcg cccctacgca tttggggatg taaaccagct gaaggcgatt ttctggttgc
      901 tcttggcgta aaaagaggta taataaagtt gtgtaaggtg tttgcctgcc gataggcagg
      961 taaggcgggt gtattgttaa cgatggaggg ttaggttatg tttggtttag gcacgccgga
     1021 gttgatttgg atttttctta tccttttgct tcttttcggg gcggcaaagc tccccggttt
     1081 aggcaaggcc atcggcaaga ccatctcgga gttcaagaag gggataaagg atacggattc
     1141 cgagccggct aaggaagaaa agaaggaaga aaagccgcag tcctccgata aaaagtaatg
     1201 ccggagaagg agctcacctt agtcgggcac ctggatgagc taagaaagcg gctgatctat
     1261 tgccttgtcc cgcttgccat agccgcggca gtcagccttt cctttgccag gccggtcttg
     1321 gctttcctgc gtttcccctc tgccggcttg atccggaagc tggccttttt cagcccgcaa
     1381 gaggtggcgg tagtctatac ccaaatctcg ctttttacgg ccctggtcct gtgcctgccc
     1441 attatctttt atcacctctg gaaattcatc tccccggcct tagaagaaaa acaaaaggtt
     1501 tatatctcgg cctttatctt ctgggcctca atggcctttt tgtgcggggc ggtatttggt
     1561 tacctttgcc tggcccctct ttccttgaaa ttcctgatgg gtctggccgg aagcgacctt
     1621 gagccggtaa tctctttaag caagtatatt tccttcatcc tggccatact tttgtgttcc
     1681 ggggcggcct ttgagacccc ggtcttagtc tggctcttga accggatggg gattgtcaac
     1741 cataagtttt taaggcagaa gagaaggtat gtgattgccg ggatatttat cgtatccgcg
     1801 atcattaccc ctaccaccga cccttttaat atgacccttc tggccctgcc gatgattgtc
     1861 ctttatgaaa taagcatctg gatctgccga tggagcaaga aaccggggca ataatccttg
     1921 ccggaggaaa gaacagccgg atggccgggg aggacaaggc cttcctggaa gtggaaggcc
     1981 ggccgattat cctgcggatc atagggacat taaagccttt agtcaaagaa ataataatcg
     2041 taaccaatac cccggagaaa tacgataatt tcaaggtgaa attagtcaga gacgaaagcc
     2101 cgggtatggg gccgctgatg gggatatatt ccgggcttaa ggcctcttcc tgcgaacata
     2161 atttcattac tgcctgcgat acgccgtttt tgtccgctgc gctgattgaa tatatgatca
     2221 agatccggga taattatgat ctgttggccc cgaggataga ggggaaatat catccccttt
     2281 tcgcgcttta cggcaaaaac tgcctttcgg ttatccgaaa ggcgcttgaa gaaggcaggc
     2341 ttaatgtgcg cgggatcttc ccggaattaa attgccgctt cataagcagg caggaggcag
     2401 agaggtttga taaggatctg ctttcattga ccaatatcaa caccaggctt gagctggaaa
     2461 aggcaagggg aaccaaggca taatggtaaa aagggtctta accacctgtc catattgcgg
     2521 ggtgggctgc aatttttatt tagatgtccg ggatggacgg attgccggga taatcccttc
     2581 taaatccaat tccgtctcta agggccggct ttgcgttaag ggctggcacg cccacgaacc
     2641 gattcagcat cctgaccggc tgaaaaaacc gctgattaaa gaaaacggca aatttaagga
     2701 agtctcctgg gattttgtct tggattatgt tgccgccagg cttaaagaga taaaagataa
     2761 atacggcccg gactccctgg cagtatgcac ctcggcccgc tgcactaatg aagagaattt
     2821 cttgatgatg aagttcgccc gggcggtgtt aggaaccaat aatgttgacc actgcgcccg
     2881 cacctgccat tcggcaactg tatccgggct gaatcaatca tttggttcag gggcaagcac
     2941 caattcttac gatgaattgc cctttatgga ttgtatcttg attatcggct ctaatcccac
     3001 cgaggcccat cccatagccg gctggcgggt gcgcacggct atagataacg gcgccaagat
     3061 tatcgtttgc gacccccgga agattttgcc tgccgaggat gccagtgttt ttattcagca
     3121 atttccggga tcagacattg ccctgatcaa cgcgatgata aattacattg ttacggaaaa
     3181 tttacacgat aaagaattta ttcaacaacg gacagaaggt tttaatgagc tttgggaggc
     3241 agtgaaggat tgttccccgg aatcagtaaa ggatattacc ggggttgaac cggcgcttat
     3301 caagaaagcg gccaagcttt atgccgccag taagaaagcc tgcataatgt attctcttgg
     3361 gatgaccgag cataccgtag gcacggataa tgtgattgct atggctaatc tggcaatggt
     3421 ctgcggccag gtgggcaagg aattttccgg gatatatccc atgcgcgggc agaataatgt
     3481 gcaaggcgcc tgtgatatcg gggccttaca gaatgtctat tccggatatc agccggttac
     3541 tgacgagaaa gcgcgtaaaa agtttgaggc cgcctggggc gtaggcctgc caaaagaaaa
     3601 aggccttacc ctcaccgata tgatgtataa ggccatagag ggtaagctta aatgtttcta
     3661 cataattggt gaggatcaaa tccgcaccga ccccaacagc cgctggattg agaaggcgtt
     3721 agatagttta gagtttttgg tggttcagga aatctttatg agcgataccg ccaaaaaggc
     3781 ggatgtggtg ttgccggggg cgtcttttgc tgagaaggaa ggcactttta cctgcgcgga
     3841 gcgccggttc caaagggtgc gaaaggcgat tgagcctgtt gccggaaag
//
LOCUS       DATDUB010000074         3086 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_880745, whole genome shotgun sequence.
ACCESSION   DATDUB010000074 DATDUB010000000
VERSION     DATDUB010000074.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3086)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3086)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3086
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_880745"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..386)
                     /locus_tag="VJA84_01430"
     CDS             complement(<1..386)
                     /locus_tag="VJA84_01430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40822.1"
                     /translation="MPRSKKALILGQGRIAGAVAYYLKKNNPSWAVSYLSSDREVRNA
                     DILIGALAGALGEKGLALALKYGKNLIDISDLDPPFYLRRKKEIEKSGITVLPGCGFS
                     PGLVNLILGRELSSREGIKEIEIKAGS"
     gene            complement(388..1281)
                     /gene="speE"
                     /locus_tag="VJA84_01435"
     CDS             complement(388..1281)
                     /gene="speE"
                     /locus_tag="VJA84_01435"
                     /EC_number="2.5.1.16"
                     /inference="COORDINATES: protein motif:HMM:NF002010.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyamine aminopropyltransferase"
                     /protein_id="HLD40823.1"
                     /translation="MTTIEGITFNDKQWFLEAAFPGLRRCKRDVFKIDQEIFKGKSKF
                     QDIHIFKSRGFGRMLALDGIIQFSENDEFIYHEVIAHIPLLSHKDPKKFLVVGGGDGG
                     VLREAAKHPLKELYHVEIDQEIVALSRKYLPFVSKGAFSDKRLNACFENGINFIKRYK
                     DFFDLIVVDSTDPVGPGKALFEKDFYRLVFNSLKKDGMAIFQLGPFLDFDLIIRPTAR
                     KLQAFFPVVRPARLSMPSYSCGCEYCFMIASKETDPAKISSAVISQRLKQRLGPKAAS
                     LKYYTPQIHQASLVMPKLWQI"
     gene            complement(1297..1641)
                     /gene="speD"
                     /locus_tag="VJA84_01440"
     CDS             complement(1297..1641)
                     /gene="speD"
                     /locus_tag="VJA84_01440"
                     /EC_number="4.1.1.50"
                     /inference="COORDINATES: protein motif:HMM:TIGR03330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004014 - adenosylmethionine decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0008295 - spermidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylmethionine decarboxylase"
                     /protein_id="HLD40824.1"
                     /translation="MNIKLPYYAHLIADLETEHFVDSPKEIEKILYAAARKANNTPLK
                     AVVHKFSPHGVTGVILLAESHIAIHSWPEYKYVAVDIFTCGRKTQPKKALEYIRRKFK
                     ARQIRVQEIKEG"
     gene            complement(1695..2144)
                     /locus_tag="VJA84_01445"
     CDS             complement(1695..2144)
                     /locus_tag="VJA84_01445"
                     /EC_number="4.2.2.n1"
                     /inference="COORDINATES: protein motif:HMM:NF013618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016798 - hydrolase activity, acting on
                     glycosyl bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HLD40825.1"
                     /translation="MLKISCLIMLVLFWAAPAYAQAGIDLKAIKVIESSNNPLAYNAK
                     TRCYGLYQISEICLKDFNNFHGTAYRPRDLFNPLLNKRISAWYFKRIEKMLKFYGVPV
                     SLAAVLASYNWGIGNVLDWHKQGGEFRRLPGMTRAYIRKYQKLAHRK"
     regulatory      complement(2220..2304)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF01051"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="cyclic di-GMP riboswitch class I; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /bound_moiety="cyclic di-GMP"
                     /db_xref="RFAM:RF01051"
     gene            complement(2400..2470)
                     /locus_tag="VJA84_01450"
     tRNA            complement(2400..2470)
                     /locus_tag="VJA84_01450"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2436..2438),aa:Gln,seq:ctg)
     gene            complement(2493..2642)
                     /locus_tag="VJA84_01455"
     CDS             complement(2493..2642)
                     /locus_tag="VJA84_01455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40826.1"
                     /translation="MRKTILFLLSVVFLTLSAGCNTLKGAADGFSKDWQEAKKVDDWL
                     QRNAW"
     gene            complement(2639..>3086)
                     /locus_tag="VJA84_01460"
     CDS             complement(2639..>3086)
                     /locus_tag="VJA84_01460"
                     /inference="COORDINATES: protein motif:HMM:NF039902.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40827.1"
                     /translation="AELLRPLSEEKGYLGDNFNRNYFISVVKLFKERINVLNDFSDYS
                     DFFFKEEIGLTPEAQKKLQARDYSGEFKLLIERMDSLEAFNYPAIERAFRGLVAELGI
                     KTGELVHPARAALTGKTVGPGLFELMEVLGKERIARRLNKFIKGGI"
BASE COUNT          779 a          807 c          683 g          817 t
ORIGIN      
        1 gaaccggcct taatctctat ctcctttatt ccttcccggc tggagagttc ccttcccagg
       61 ataagattca ccagcccggg agaaaaccca cagcccggga ggaccgtaat ccctgatttt
      121 tcaatctctt ttttccggcg caggtaaaaa ggggggtcca ggtccgagat atcaatcagg
      181 ttctttccgt atttcaaggc caaggccagg cccttttccc ccaatgcccc ggccaatgcc
      241 ccaattaaga tatccgcgtt tctaacttct cggtcggaag ataaataaga aaccgcccaa
      301 gagggattat ttttcttaag ataatacgca accgcgcctg caatccggcc ctggccgaga
      361 attaatgcct ttttacttcg cggcatctta aatctgccag agtttgggca tcactaagct
      421 ggcctggtgg atttgagggg tgtaatattt gagcgaggcg gccttcggcc ccaatctctg
      481 cttaaggcgc tgggagatta cagcggagct gattttggcc gggtctgttt ctttggaggc
      541 aatcataaaa caatattcgc atccgcagct gtaggaaggc atgctcaagc gcgccggccg
      601 gacaaccggg aagaaggcct gcagtttcct ggcggtaggc cggataatca ggtcaaaatc
      661 cagaaacggc cctaactgaa agatggccat gccgtctttc tttaaggaat taaaaaccaa
      721 gcggtagaag tctttttcaa aaagcgcctt gcccggtccc accgggtcgg tggaatccac
      781 cacaatcaga tcaaagaaat ccttgtatct ttttatgaaa tttatcccgt tttcaaaaca
      841 ggcgttcagc ctcttatcgg aaaatgcccc cttagaaaca aaagggagat atttcctgga
      901 aagcgcgact atctcttggt caatctccac atggtaaagc tcttttaagg ggtgtttagc
      961 cgcctcccgc aataccccgc cgtcgccgcc gccgacaact aagaatttct tgggatcctt
     1021 atgggataat aaaggtatat gggcgattac ctcgtgatag ataaactcgt cattctcgga
     1081 gaattggatt atcccgtcca gggccagcat ccggccaaag ccccggcttt taaagatatg
     1141 gatatcctgg aacttgcttt tgcccttaaa tatctcctgg tcaatcttga agacatcccg
     1201 tttacagcgg cgcagtccgg gaaaggccgc ctctaaaaac cactgtttat cattaaaagt
     1261 tatcccttca attgttgtca tagcgctcat ttttatttag ccctctttta tttcctggac
     1321 cctgatctgg cgggccttaa atttccgcct tatgtattcc agggccttct tgggctgggt
     1381 cttgcggccg caggtaaaga tgtccaccgc cacatatttg tattccggcc aggagtgtat
     1441 ggcgatatgc gactccgcga gcagtatcac cccggtcacc ccgtgaggcg agaatttatg
     1501 caccacggcc tttaaaggcg tattattggc ctttctggcg gcggcataca aaatcttctc
     1561 tatctctttt gggctgtcaa caaaatgctc ggtttccaaa tccgcgatta aatgcgcgta
     1621 ataaggcagt ttaatgttca tagtagtaaa acatattaac gcaaagaagg gtatttttca
     1681 atccaaattt ttatttattt tctgtgggcg agtttttgat atttcctgat gtaggcccgg
     1741 gtcatcccgg gcaggcggcg gaattcccca ccttgcttat gccagtccag gacattaccg
     1801 atcccccaat tataagaagc cagcaccgcg gccagggaaa ccggcacccc gtaaaactta
     1861 agcatctttt ctatcctttt aaaataccag gcggaaatcc ttttattcaa caaggggtta
     1921 aataaatccc tgggccggta agctgtgccg tgaaaattat taaaatcctt caggcagatc
     1981 tcggagatct gatacaggcc gtaacagcgg gttttggcgt tataggccag gggattgttg
     2041 gaggattcta tgaccttgat ggccttcagg tctatccccg cctgggcata agccggcgcc
     2101 gcccagaaca aaaccagcat tatcaagcag gagattttta acatcttgat cccccggtga
     2161 ggcgtaaaaa aacaaaaaag cccaaaggca aatcctttgg gcttataaac cgctatcctt
     2221 ttggcagcgc agccctccga tgcttacaga atcggagctg tcgctttgcg ccccggcatt
     2281 actgccagtt tgcctttatc atttgaacag acttattatc ttatcaaaga aacttctttt
     2341 tgcttctaac taaagtatac cttattttca gccaaaatgc aaatgccggc taagcaaaat
     2401 tgccccgcgt ggattcgaac cacaatactc agatccagaa tctgatgtcc taccattaga
     2461 cgacagggca gaaatttagg cggattttgg tcttaccagg cgttgcgctg cagccaatcg
     2521 tcaacctttt tggcctcttg ccagtctttg ctgaaaccgt ctgccgcgcc tttaagagta
     2581 ttgcagcccg cggaaagagt taaaaaaaca actgacaaga gaaacaggat ggtttttctc
     2641 atatgcctcc tttgataaac ttattcaatc tccgcgctat cctctccttg cccaggactt
     2701 ccatcaactc aaacagcccg gggccgacgg tcttgccggt gagcgccgcg cgcgccggat
     2761 gcaccagctc cccggtcttt atccctaatt ccgcgactaa gcctctaaag gcccgctcga
     2821 tagccggata attaaaggcc tccagggaat ccatcctctc aatcagcagt ttaaactctc
     2881 cggaatagtc cctggcctgg agcttctttt gggcttccgg ggtcaggccg atctcttcct
     2941 taaagaaaaa atcgctgtaa tcgctaaaat cgtttaagac attgatccgc tctttgaaca
     3001 attttactac agaaataaaa taatttctat taaaattatc ccccagatac cctttctcct
     3061 cggagagtgg ccttaacagc tcggcc
//
LOCUS       DATDUB010000075         3449 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1553450, whole genome shotgun sequence.
ACCESSION   DATDUB010000075 DATDUB010000000
VERSION     DATDUB010000075.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3449)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3449)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3449
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1553450"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..979
                     /locus_tag="VJA84_01465"
     CDS             <1..979
                     /locus_tag="VJA84_01465"
                     /inference="COORDINATES: protein motif:HMM:NF012485.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015291 - secondary active transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="TonB family protein"
                     /protein_id="HLD40828.1"
                     /translation="TRKWSRSALDTTINHLVSVGKIKILSRPKLVCLSGKEAEFVVGG
                     QYPIVSTTVTATAGTSSSSTEFKDYGITLKIKPVVKDEENIQISISNEITEIDSSVTV
                     SNDSPPAFSTRNTKTELYLRNEQSLVMSGLIKNTERDTVEKFPGLGELPILGMLFRSK
                     DFQNKQTELVIILTPSIEEGSPVFKKKDHLEKKDLGEISGRQRYPERVLAEAPDADEE
                     AVNYLAEEPAPKEGIAHYLEEIKAKVASSLTSSRTAAREFGYKGTLKLRLRIFSDGTL
                     KDISVLSSSGSELVDSSAIFAIKNLAPFPSFPLSVERKELSLDIPVVFN"
     gene            989..3136
                     /locus_tag="VJA84_01470"
     CDS             989..3136
                     /locus_tag="VJA84_01470"
                     /inference="COORDINATES: protein motif:HMM:NF012652.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase, T2SS/T4P/T4SS family"
                     /protein_id="HLD40829.1"
                     /translation="MPQAKFIVLFSTKGGVGKTLLSVNLAVSLSRESQKRVCLVDFDL
                     QAPMDMARMLDLQPAKSLADVPAEKEIKEPEINSLIVRHTSGIDFLPAALRPNQSPYI
                     EKKIISAALSGLEVKYDYVVVDAGRAFSDNFISVLGFSNLILMVVTPDILSIYQTKWA
                     LDVLQSLHFPLKMIKFILNRSDSLGGFAWQEVKSNLPAEILINIPSEGRAVGLSVNRR
                     LAVVLDNPKSRFSQAVTKLTQELLKGEKDLFLKRIELDKLELAKEAPREYKEFWRIYG
                     LMDAQAVEAEAKVDELVELKRRVHKRLIEELNLRNLDLSFTDTAKVKEIREKTEKSIA
                     NSLAEESGALLSSFEVRKHLIKEIADEALGLGPLEDLIDDPEISDIMVNNKDQIYVER
                     QGKLELTSKRFISNEQVRQVIERIIAPLGRRIDESSPMVDARLSDGSRVNAIVSPLSL
                     GGPMLTIRKFSRDIFTTDALMKFGSLNSEMAEFLKACVVSRKNIIVSGGTGSGKTTVL
                     NVLSAFIPSNERIITIEDAAELKLSQEHWGRLESRPQNIEGKGAITIRDLFRNTLRMR
                     PDRVIIGECRGAETLDMLQAMNTGHDGSMTTVHANSTQDVLARLDSMILMTGPELPVR
                     AIREMIASAVDIIVHTARLSDGSRKVTQITQITGMKDEMHIGLQDIFSFRQTGIDSQG
                     KVLGGFEPTGVIPTFIEDIRVRGIKLSDDIFKK"
     gene            3133..>3449
                     /locus_tag="VJA84_01475"
     CDS             3133..>3449
                     /locus_tag="VJA84_01475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012529486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF192 domain-containing protein"
                     /protein_id="HLD40830.1"
                     /translation="MNPALPKRRDITKRKSGVKSCRVINLTKNTVVAQNAGIADNLFS
                     RMRGLLGRKSLNLQEGLILRPCNSIHTFFMRFPIDVVFLDRYDLIIKVYHSLSPWRLS
                     RTF"
BASE COUNT          861 a          852 c          910 g          826 t
ORIGIN      
        1 caccaggaag tggtctcgct cggcattgga caccaccatc aaccatttag tcagcgtggg
       61 caagataaag atcctttccc ggccgaagct ggtttgccta agcggcaaag aggcggaatt
      121 tgtggttgga gggcagtatc cgatagtttc caccacggtt accgccacag ccgggacaag
      181 ttcctccagc accgaattca aggattacgg gatcaccttg aagatcaagc cggtggttaa
      241 agacgaagag aatatccaga tatccatctc aaacgaaatc accgagatag attcaagcgt
      301 cacggtttcc aatgacagcc ctcccgcctt ctccacccgc aacaccaaga ccgagctcta
      361 tttgcgcaat gagcagagtt tggtaatgag cggcctgatc aagaataccg aaagagatac
      421 tgtggaaaaa ttccccggtc tgggcgagct gcctatcctg gggatgcttt ttcgttccaa
      481 ggatttccaa aacaagcaga ccgagctggt gattatcctg accccttcaa tagaagaagg
      541 ctcgccggtt tttaagaaaa aagaccatct ggagaaaaaa gatttggggg aaatatccgg
      601 ccggcagaga tatcctgaac gggtcttggc agaagccccg gatgcggatg aggaagcggt
      661 taattatctc gcggaagagc cggctccgaa ggagggcata gcccattacc ttgaagaaat
      721 caaggccaag gtagcatctt ctcttacatc ttcgcgcacc gcggccaggg aattcggcta
      781 taaaggcacc ctgaaattgc gcctgcgtat cttttccgat ggcaccctga aagatatctc
      841 tgtcctttct tcatcgggta gcgagcttgt ggacagctcg gccatatttg ccatcaaaaa
      901 cctggcccct tttccatcct tcccgctttc agttgagcgc aaagagctgt ccttagacat
      961 cccggttgtc ttcaattaaa atctgaaaat gccacaggcc aaattcatcg tcttattcag
     1021 cactaaaggc ggggtaggta agaccctgct tagcgtaaac ctggcggtaa gcctatccag
     1081 agaatctcaa aagagggttt gcttggttga ttttgacctc caggccccga tggatatggc
     1141 ccggatgctt gacctccagc ctgccaagtc cttggccgat gtcccggccg aaaaagagat
     1201 taaagagccg gaaataaaca gccttatcgt ccgccatacc agcggcattg atttcttgcc
     1261 ggcggccttg cggcccaatc aatcccctta tattgagaaa aagataattt ccgcggcctt
     1321 gtccggcctg gaggtaaaat acgattatgt ggttgttgac gccggccggg cctttagcga
     1381 taattttatc tcggtcctgg gcttttctaa cctgattctt atggtggtta ccccggatat
     1441 cctctccata tatcagacca aatgggcttt agatgtcctg cagtccctgc atttcccgct
     1501 taagatgata aaatttatcc tcaaccgctc ggatagttta ggcggctttg cctggcagga
     1561 ggtgaagtct aatctgccgg cggagatatt gattaatatc ccttccgaag gcagggcagt
     1621 gggtttatcg gtaaaccggc gtttggcggt agtattagat aaccctaaaa gccgtttttc
     1681 ccaggcggtt accaagctta cccaggaact cttaaaaggc gaaaaagatc tgtttctgaa
     1741 acggatagag ctggataaac tggagctggc taaagaggcg cccagagaat ataaggagtt
     1801 ctggcggata tacgggttga tggatgccca ggcggtggag gccgaggcca aggtggatga
     1861 gttggtagag ctcaagcgcc gggtgcataa gcgcttgatt gaggagttga acctaaggaa
     1921 tctggacctt agtttcaccg atacggccaa ggtcaaggaa atccgggaga agaccgaaaa
     1981 gtctattgcc aattctttgg ctgaagaaag cggggcattg ctctccagct ttgaggtgag
     2041 aaaacacctg atcaaggaaa tagccgatga ggccttaggc ttaggtcctt tagaggattt
     2101 gattgatgac ccggaaatca gcgatattat ggttaataat aaggaccaga tttatgtgga
     2161 gcgccagggc aagttagagc tgacctccaa gcgctttatc tccaatgagc aggtcaggca
     2221 ggttatagag cggataatcg ctcccttggg caggaggata gatgagtcca gcccgatggt
     2281 ggatgcccgc ttgagcgacg gttcccgcgt aaatgccatt gtttccccgc tgtctttagg
     2341 cgggccgatg ctgactatcc gcaagttttc ccgggatatc ttcaccactg acgcgcttat
     2401 gaaattcggc agtttaaatt ccgaaatggc ggaattcctc aaggcctgcg tagtctcgcg
     2461 caagaatatc attgtctccg gtgggaccgg ttcaggtaaa actacggtat tgaatgtgct
     2521 ttccgccttt attccttcaa atgagcgcat catcaccatt gaagacgccg cggaattgaa
     2581 actttcccag gaacattggg gccgtttaga gtccaggccg cagaatattg agggaaaagg
     2641 ggccataacc atccgcgacc tcttccgcaa taccttgagg atgcggccgg accgggtaat
     2701 tatcggggag tgccgggggg cggagaccct ggatatgctc caggcaatga ataccggcca
     2761 cgacggctca atgactacgg tgcacgccaa ttctacccag gatgtcctgg cccgcctgga
     2821 ttcaatgata ttgatgaccg gccccgagct tccggtgcgg gccatccggg agatgattgc
     2881 ctcggcagtg gatatcattg tgcatacggc ccgcctttcc gacggctcgc gcaaggtgac
     2941 ccagattacc cagattaccg ggatgaagga tgagatgcat atcggcctgc aggacatatt
     3001 ctcctttcgc cagaccggga tagattctca aggcaaggtt ttgggcggtt ttgagccaac
     3061 cggcgttatc cccaccttta ttgaggacat ccgggtgcgg gggattaagc tttccgacga
     3121 catcttcaag aaatgaaccc tgcccttcct aaaaggcggg atataactaa aaggaagagc
     3181 ggggtgaagt cctgccgggt tattaatctg accaaaaata ccgtagttgc ccaaaatgcc
     3241 ggaatagcgg ataatttatt ctcgcggatg cgcggcctgc tgggcaggaa atcccttaat
     3301 ctccaggaag gccttatctt gaggccctgc aattctatcc ataccttttt tatgcgcttt
     3361 cccatagatg ttgtcttcct ggaccgctat gacttgataa ttaaggtcta tcattctttg
     3421 tccccctggc ggctaagccg gacattttt
//
LOCUS       DATDUB010000076         2148 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_706915, whole genome shotgun sequence.
ACCESSION   DATDUB010000076 DATDUB010000000
VERSION     DATDUB010000076.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2148)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2148)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2148
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_706915"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(203..>2148)
                     /locus_tag="VJA84_01480"
     CDS             complement(203..>2148)
                     /locus_tag="VJA84_01480"
                     /inference="COORDINATES: protein motif:HMM:NF012348.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004356 - glutamine synthetase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glutamine synthetase III"
                     /protein_id="HLD40831.1"
                     /translation="YYTHWFQPMTGLTAEKHDSFISITAPGKVMEKFSGNKLIQGEPD
                     ASSFPSGGIRATFEARGYTAWDPSSPAFIIESKFGKTLCIPSIFISYHGEALDKKLPL
                     LRSDEALNKAAIGLLRLFGHKDIKKVFSTCGPEQEYFLIDKNYYNLRQDLLLTGRTLV
                     GAASPKGQQLEDQYFGTIKERVVNFMFEVAEEAYKLGIPVMTRHNEVAPHQYEFAPVF
                     EESNIAADHNQLLMELMKKVALRHNLVCLLHEKPFAGINGSGKHLNWSLADDKGNNLL
                     NPGETPVDNLQFLVVLAAVLRAVHNHADLLRASVAMAGNEHRLGANEAPPAIMSVFLG
                     DQLTVILDMIEKGSKNKVSERGIIDLGINRLPKFNKDSTDRNRTSPFAFTGNKFEFRA
                     VGSSQNISTPITVINTIIAESLDYVADKIRKASSGKDFNAAVLKVIAELAKETKDIRF
                     EGNNYSEEWLKEARKRGLPNVASTAEALKALEKKENIALFEKYKVFSKEELLARYKIW
                     IDMYNITLEIEANTLNEMVNSCIVPAGCEYEQLLADNLSKLVSLKKEVKLKLDEAVLN
                     DQKTHLSEVAEKIYYVRRNSKELVKLLGEAAKLHHEERAELYFKELKPLMEHIRKHAD
                     DLERVVSDEHWDLPKYREMLFIK"
BASE COUNT          515 a          562 c          500 g          571 t
ORIGIN      
        1 ccctttaata tcgcagacaa accccacccc gcaggagtca tgctcaaaac gagagtcgta
       61 aagcccgtgt ttttctaaat cttggcggtt attcattttg actttctata atatcgcata
      121 cttaagtttt aggcaagaaa aaaatgaggg gaaaccagaa ttgcggtctc ccctcataat
      181 ttgcttccgg gataatccgg gattatttta taaacagcat ctcgcggtat ttcggcaggt
      241 cccaatgctc gtcggaaacc acccgttcca ggtcatcggc atgcttacgg atatgctcca
      301 tcaaaggctt caattccttg aaataaagct ccgcgcgctc ttcatggtgg agtttagccg
      361 cctctcctaa gagcttgacc aattctttgg aattgcgccg gacataataa atcttttccg
      421 ccacctcgct aagatgagtc ttctggtcgt ttaagaccgc ctcatccagt tttagcttga
      481 cctctttctt gaggctcacc agcttggaaa ggttatccgc cagcaattgc tcgtattcgc
      541 accctgccgg gacaatacag gaattaacca tctcattcag ggtattggcc tcaatctcca
      601 gggttatgtt atacatatca atccagatct tgtaacgggc caggagctct tcttttgaga
      661 aaaccttgta tttctcaaat aaggcgatat tctccttctt ctctaacgcc tttaaggcct
      721 cggctgtgga agccacattg ggcaggcctc ttttcctggc ttccttaagc cactcctcgg
      781 aataattatt cccttcaaaa cggatatcct tggtctcctt ggccagctcg gcaatcacct
      841 ttaataccgc cgcgttaaag tccttgccgc ttgaggcctt ccttattttg tcggccacat
      901 agtctaagct ctcggcaatg atggtgttaa tcacggtgat aggggtggag atattctggg
      961 aagagcccac tgcccggaat tcaaatttat tgccggtaaa ggcaaaaggc gaggtccggt
     1021 tgcggtcagt tgagtcttta ttaaatttgg gcagccggtt gatgcctaaa tcaattatgc
     1081 cgcgctcgga aaccttgttc ttggagccct tttcaatcat atccaggatc acggtcaatt
     1141 gatcccccag aaaaacgctc ataatcgccg gaggggcttc attggcgcct aagcggtgct
     1201 cattgccggc catagccacg ctggcccgca aaagatcggc gtgattatgg accgcccgca
     1261 ggaccgccgc caggaccacc agaaactgca ggttatccac gggcgtttct ccgggattta
     1321 agagattatt ccctttgtcg tcggccaaag accagttaag gtgcttgccg cttccgttta
     1381 tcccggcaaa gggcttttcg tgcaaaagac agactaagtt atgcctaagg gcgacttttt
     1441 tcattaactc catcaacaac tggttgtggt cagcggcgat gttggattct tcaaatacgg
     1501 gagcgaattc atactggtgc ggggcaacct cgttatgccg ggtcatcacc ggtatcccca
     1561 gcttataggc ctcttcagcc acctcaaaca taaaattaac cacccgctct ttgattgtcc
     1621 cgaaatactg gtcttcaagc tgctgcccct ttggcgatgc cgctcccacc agggtgcggc
     1681 cggtcaacaa cagatcctgc ctcaaattgt aataattctt gtctatcagg aaatattcct
     1741 gttccgggcc gcaggtggaa aacacctttt taatgtcctt atggccgaaa agccgcagaa
     1801 ggcctatggc cgccttattc agggcctcat ccgaacgcaa aagcgggagt tttttatcca
     1861 aagcctctcc gtgatacgag ataaatatgc tggggataca aagggtcttg ccgaatttgc
     1921 tttcaattat aaaggccgga ctagaagggt cccaggccgt ataaccccgg gcctcaaagg
     1981 tggcgcggat accaccggaa ggaaaagagc tggcatcggg ttcgccctgg atgagtttgt
     2041 tcccggaaaa cttttccata accttacccg gagcggtgat agaaataaag ctgtcgtgct
     2101 tttccgcggt caagccggtc atcggctgga accaatgggt atagtaag
//
LOCUS       DATDUB010000077         4727 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1218613, whole genome shotgun sequence.
ACCESSION   DATDUB010000077 DATDUB010000000
VERSION     DATDUB010000077.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 4727)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4727)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4727
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1218613"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..529
                     /gene="fusA"
                     /locus_tag="VJA84_01485"
     CDS             <1..529
                     /gene="fusA"
                     /locus_tag="VJA84_01485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015423091.1"
                     /note="EF-G; promotes GTP-dependent translocation of the
                     ribosome during translation; many organisms have multiple
                     copies of this gene; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HLD40832.1"
                     /translation="FEDKLKGGSIPREFVPAIRNGVNSAAKSGILAGYPVTDVAVTLI
                     DGSYHDVDSSELAFQMAGSIAFSDGLRQASCILLEPVMDMEVIVTEEFMGTIIGDLNS
                     RRAKIVALGQRANTKIIRAHVPLAEIFNYATVIRSLTQGRATYSMEPSFYQEVPGHIA
                     QKIRERGTAVLRFGN"
     gene            599..1801
                     /gene="tuf"
                     /locus_tag="VJA84_01490"
     CDS             599..1801
                     /gene="tuf"
                     /locus_tag="VJA84_01490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013787134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HLD40833.1"
                     /translation="MAKEKFVRSKPHVNIGTIGHVDHGKTTLTSAITMVLNKKGYAEA
                     RAYDSIDNAPEERERGVTINISHVEYQTDNRHYAHIDCPGHADYIKNMITGAAQMDGG
                     ILVVSAADGPMPQTREHILLARQVNVPSLVVFLNKVDMVEDKELIDLVEMEVRDLLTK
                     YNYPGDKTPIIRGSGLNAMNCACAKDDCKNCKPILDLMKAVDDFIPLPKRDLDKPFLM
                     AVEDVFSIEGRGTVGTGRVERGKVKINENVDIVGLRPEIGKTVVTGIEMFRKLLDEGM
                     AGDNVGLLLRGVDKKILERGMVLAAPGSITPHTKFKTQVYILTKEEGGRHTPFFQGYR
                     PQFYFRTTDVTGNCKLPEGVEMVMPGDNVQLEVELIIPIAMEKESRFAIREGGHTVGA
                     GVVSEIIA"
     gene            1812..2111
                     /gene="rpsJ"
                     /locus_tag="VJA84_01495"
     CDS             1812..2111
                     /gene="rpsJ"
                     /locus_tag="VJA84_01495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012973204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HLD40834.1"
                     /translation="MQKIRIKLKAHDHRLLDQAVSEIVETAKKTGARVSGPVPLPVKR
                     EIYTVNRSPVIDKKSREQFYLLTHKRLLELTEPTAKTIDALRKLNLPSGVDVAIK"
     gene            2228..2836
                     /gene="rplC"
                     /locus_tag="VJA84_01500"
                     /pseudo
     CDS             2228..2836
                     /gene="rplC"
                     /locus_tag="VJA84_01500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011917791.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
     gene            3111..3758
                     /gene="rplD"
                     /locus_tag="VJA84_01505"
     CDS             3111..3758
                     /gene="rplD"
                     /locus_tag="VJA84_01505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011345190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HLD40835.1"
                     /translation="MKLSVYDMQGKKVEEVDSLFGGRVNTALVSQAVKMYLANQRCGL
                     AQTKTRGEVSGGGKKPWKQKGTVRARAGSIRSPLWRHGGVVFGPHPRSYRYGLSSKTL
                     NGALLSALNDRALKDSILILDKLEMSAPKAKEMRAVLDNLKLKGKVLLVSNQYEKNVA
                     LACRNIQGLSLALAKDLNALDVLKASKVVLLKNSLDGLKNRLSLDDKINKKSDDK"
     gene            3748..4032
                     /gene="rplW"
                     /locus_tag="VJA84_01510"
     CDS             3748..4032
                     /gene="rplW"
                     /locus_tag="VJA84_01510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016664022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HLD40836.1"
                     /translation="MTNKNSYDIIKTLLRTEKAQAQEPLRKYLFLVDKKADKAQIKSA
                     VEEIYKVKVDSVNTRIVPGKLRRVRIKAGYQPDRKKAFVTLKEGSKIDIT"
     gene            4127..>4727
                     /gene="rplB"
                     /locus_tag="VJA84_01515"
     CDS             4127..>4727
                     /gene="rplB"
                     /locus_tag="VJA84_01515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018249353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HLD40837.1"
                     /translation="MGIKKHKPTTPSLRWTRTSDFKDLTAKKPYKPLLKALKKSGGRN
                     VYGRITVRHHGGGHKRLYRLIDFKRGRLDELATVLTIEYDPNRSGRIMLVEYPDKEKS
                     YCLAPLDIKPGDQIISSYKPETEIKPGNCLPLRYIPLGTAVHNLELSKGKGAQIVRSA
                     GSLATVTAKEGNIAHIRLPSAEVRLVNLDCRAVIGQVSNI"
BASE COUNT         1332 a          996 c         1323 g         1076 t
ORIGIN      
        1 ctttgaggat aagctaaaag gcggaagcat cccccgggaa tttgtgccgg caatccgaaa
       61 cggggtgaac tccgcggcta agagcggtat cctggccggt tatccggtta cggatgtggc
      121 ggtaaccctg atagacggtt cgtatcatga tgtggattcc tcggaacttg ccttccagat
      181 ggccggctcc atcgccttct ccgatggttt gaggcaggca tcctgcatat tgcttgagcc
      241 ggttatggat atggaggtta tcgtgaccga ggagtttatg gggacgatca tcggggacct
      301 taattcccgc cgggcaaaga tagtagcttt gggtcaaagg gcgaatacca agatcatccg
      361 cgcccatgtg cctttggcgg agatatttaa ttacgcgaca gtaatccgtt ccctgactca
      421 aggcagggca acttattcca tggagccctc tttttatcaa gaggtgcctg ggcatatagc
      481 gcaaaagata cgggaaagag gcacggctgt cctaagattt gggaattaac ccttcggctt
      541 tcgttttatg gttaattcca ggctaaagta aaagtaacta aaaaaggagg agactaaaat
      601 ggctaaagaa aagtttgtaa gatccaaacc tcatgttaat atcgggacta tcggtcatgt
      661 tgaccatggc aaaaccaccc ttacctcggc aatcacaatg gttttaaaca agaaaggtta
      721 tgccgaggcc agggcctatg acagcattga taacgccccg gaagagaggg aaagaggggt
      781 tactattaat atctcccatg tggagtatca gaccgataac cgccactacg cccatattga
      841 ctgcccgggg catgccgact acatcaagaa tatgattacc ggcgcggccc agatggacgg
      901 gggcatcctg gtggtttccg cggccgacgg cccgatgccc cagaccagag agcatatcct
      961 gcttgcccgc caggtgaatg tgccgtcgct ggtagtgttc ctgaataaag tggatatggt
     1021 tgaggataag gaattgattg acctggtgga aatggaggtc agggaccttt tgaccaaata
     1081 taattatccc ggagacaaga ccccgattat ccgcggttca ggattaaacg cgatgaactg
     1141 cgcctgcgcc aaagatgact gcaaaaactg caagcctatc ctggacctga tgaaagcggt
     1201 ggacgatttt atcccgcttc ctaagaggga cctggataaa ccgttcctga tggcggtaga
     1261 agatgtcttc tccattgaag gaagagggac cgtaggcacc ggcagggttg agagaggcaa
     1321 ggtcaagatt aacgaaaatg tggatatcgt gggtttaagg ccggagatcg gcaagaccgt
     1381 agttaccggg attgaaatgt tccgcaagct ccttgatgaa ggcatggccg gagacaatgt
     1441 gggcctgctt ttaagaggcg tggataaaaa gattctggaa agagggatgg tcctggcggc
     1501 tccgggttca attacccccc acaccaaatt caagacccag gtgtatatcc tgaccaaaga
     1561 ggaaggcgga agacataccc cgttcttcca gggttaccgg ccgcagtttt atttccggac
     1621 cacggatgtt accggaaact gcaagctccc cgagggagtg gaaatggtta tgccgggaga
     1681 caatgtgcag ctggaagtag agttaattat ccctatagct atggaaaagg aatcccgttt
     1741 tgccatccgc gagggaggac ataccgtagg cgccggggtg gtatcggaga taatcgctta
     1801 aagcgacgaa tatgcaaaag atacggataa aattaaaggc gcacgaccac cgtttgttag
     1861 atcaggcagt ttctgaaatt gtggaaaccg ccaagaagac cggggcaaga gtttccgggc
     1921 ccgtgccttt gccggtgaaa cgggagatct acacggtaaa ccgctctccg gttattgaca
     1981 aaaaatcccg ggagcagttt tacttattaa cccataaacg gttactggag ttgactgagc
     2041 ctaccgccaa gaccattgac gccctgcgca agcttaatct gccttcaggc gtggatgtgg
     2101 cgataaaata atagaaaaaa atcaagggtc gatagtctat ggtctatagt cgatagaaga
     2161 ataaactata gaccatcggc tatagactat agacccttga ttaatgagtt gattggagat
     2221 tttaaaggtg aattatatac ttggtaaaaa aatagggatg acccagattt atgacgatac
     2281 cggaaggctt actccggtaa ccgtgattga ggccgggcct tgtcctgtag taagcataaa
     2341 agagaaaaac gtccaactgg cctttgaaga aacccaggag aagaaattga gcaagccggt
     2401 tttggggacc tttaaaaagt ccggattaaa gcctttcagg atgcttaaag aggttcctaa
     2461 gcttccgggg gcccagtata cgatagggca ggaatttaag gttgatatgt ttaaccccgg
     2521 agataaggta gatgtgaaag gcacttctat tggcaagggt ttccagggag gtatgcgcag
     2581 gtggcattgg caaggcgggc ctaagaccca tggttcaacc agccaccgca gggttggctc
     2641 aataggctca agcacgactc cgggaagggt ctggaaaggc caccatatgc ccgggcatat
     2701 gggcgatgat acggtaacga ccttcggcct gaaagtggta aaggtggatg ccgggaataa
     2761 tcttatggcg gttaagggag cggtgcctgg ctgtaaaaac agttatttgg tcgttcgcaa
     2821 gaccaccaag cataagcggc agattatcaa gcctatcatt gccgagcaga aggcggagtc
     2881 tctgaagaaa gacgccaaaa agcaggcagg ttcgggcggt aagaaataag cgtattcgga
     2941 ctgcgtcagg tatcccgtgc tcaaacagtc ctcggcgctt tcttgataac tacattatgg
     3001 aatggcgcct gcggaactgc gcgcgggaca cctgccgcgg tccgttttaa gccagttgtt
     3061 ctggtgctct tgcgcacccg tgattaatga gttaatatgg agattttcgg atgaaactat
     3121 cggtttatga tatgcagggc aagaaggttg aagaggtgga ttctctcttt ggcgggaggg
     3181 tcaacacggc gctcgtttct caagcggtaa agatgtatct ggctaatcaa cgctgcgggc
     3241 ttgcccaaac caagacccgg ggggaagttt ctgggggcgg gaaaaaaccc tggaagcaga
     3301 aaggcaccgt aagggcgagg gccggttcta tccgttcacc gctttggagg cacggcgggg
     3361 ttgtctttgg gccgcatccg cgctcttacc gttacgggct atcttcaaaa acgcttaatg
     3421 gcgcgttatt gtcggcctta aatgacaggg cgttaaaaga cagcatctta atcctggata
     3481 agctggagat gtctgcgcct aaggctaaag agatgcgcgc ggtattagat aatttaaagt
     3541 taaagggaaa ggtcttgctg gtttctaatc aatatgaaaa gaatgttgcc ctggcctgcc
     3601 gcaatatcca gggcttaagc ctggccctgg ccaaagactt aaatgccctg gatgtcttga
     3661 aggcctctaa ggtagtgttg ctgaagaatt ctttggatgg tttgaaaaac aggctgtctt
     3721 tagacgataa aataaataaa aaaagtgatg acaaataaaa attcgtatga tataattaaa
     3781 actttattgc gcactgaaaa ggcgcaagcg caggagccgt taaggaaata cctgtttctc
     3841 gtagataaga aagcggacaa ggcccagatt aaaagcgcgg ttgaggaaat ctataaggta
     3901 aaggttgatt cggtaaatac caggattgtc cccggcaaac tgcgccgggt aaggataaag
     3961 gccggttatc agccggacag gaagaaggcc ttcgtaaccc ttaaagaggg aagcaagata
     4021 gatataactt aaaaatttga aagtcaaaag tcaaaacgcg aaagtaagaa attaggaagg
     4081 cgcgtagagg cagacctgtg tgtctgcccg cgttaagaaa gtaaaaatgg gaataaaaaa
     4141 acataagccg acaacgccgt cattaagatg gacccggacc tcggatttta aagacctgac
     4201 cgccaaaaag ccctataagc ctttgcttaa ggcccttaag aaaagcggag gcaggaatgt
     4261 ctatggaagg attacggtca ggcatcacgg cggcgggcat aagaggctct ataggctgat
     4321 tgattttaag cgcggccgtt tggacgaatt ggctacggtt ttaaccattg agtatgatcc
     4381 taatcgttcg ggcaggatta tgctggtgga gtatccggat aaagaaaaaa gttattgcct
     4441 tgccccgtta gatataaagc cgggggatca gattatcagt tcttataagc cggaaacgga
     4501 aataaaaccc ggcaactgcc tgcctttaag atatattcct ttaggaacag ctgtgcataa
     4561 cctggagttg tctaagggaa aaggggctca aattgtcagg agcgccggga gcctggccac
     4621 agttaccgct aaagaaggga atatcgcgca catccgtttg ccttccgctg aggtgagatt
     4681 ggtgaattta gactgccggg cggtcattgg gcaggtttct aacattg
//
LOCUS       DATDUB010000078         2048 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_549153, whole genome shotgun sequence.
ACCESSION   DATDUB010000078 DATDUB010000000
VERSION     DATDUB010000078.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2048)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2048)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2048
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_549153"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2048
                     /locus_tag="VJA84_01520"
     CDS             <1..>2048
                     /locus_tag="VJA84_01520"
                     /inference="COORDINATES: protein motif:HMM:NF012349.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004807 - triose-phosphate isomerase
                     activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HLD40838.1"
                     /translation="MGNNIFDKDRGLAIPVFAIPDNIGGRYSVRSPGGDITSEFAGID
                     TSRFNKGARDALDKYLSYDPAVNIALQAALEAYSINPYFLNAVVPSWKLMAFGDHLAQ
                     LIPESDSKSNKGQVVKVYLERLMDKAGNGIFDNKTVTIKIIVGGARSGVYFEKDNRII
                     TYALADYSEEELAKMFFFFEEFTVRLGLFYIGEETGDIYSESFLRADPLTQGFVELGK
                     AVVARFATEASAKGPAEGRYRGYEKKIGKGPLVDKISLFTSGKKEDSLPDYAVAAIPK
                     EAVNISDEALLKAVKEIEGILNQEFVSEADEARLAKLLESVKGYGRGRQGRFIENSAL
                     TLARLAFYEYKKSKLIWPLFYGSNLLQQKALGVWYKYIAPALRPEFGVGTTRQHSYFE
                     GGFGGAEVYMPLFVDVVSSLDEIRKFQEPLKTYGLARDYLNGLYDDEILRLYLEAQAQ
                     AFSTGGDISLEQLSADGTMKRIKREVEVKRDNAILRLKGLASDLGRIQAYRLFGRFTE
                     LFTAMIEQDALPKAHTVKVDKKTPVKKQPGTEKEETKESAPAKEGDLKEKLFPGKDYR
                     RPFIIAGNQKAFSRKEFDDFYKNIPGKVNNEGDSLLFTPFERITEVIGEPVNLRQMVR
                     SAENLFVGAQDICGNGYGAYTGQTPAEEVKRMGGEFVLLGLADRANYLGEKNSEVAQK
                     "
BASE COUNT          560 a          407 c          571 g          510 t
ORIGIN      
        1 taatggggaa caatatcttt gacaaggata gagggcttgc aatacccgta ttcgccatac
       61 cggataatat cggcggcaga tactccgtgc gcagtccagg cggcgacatc acctcggagt
      121 ttgccggtat tgataccagc cgtttcaata agggagcgcg ggatgcttta gataagtatt
      181 taagctatga tcctgcagtc aatatcgcgc tgcaggcggc tttagaggcc tattcaatca
      241 atccttattt cttaaatgcg gttgtcccct cctggaaact gatggccttt ggcgaccatc
      301 ttgcccaact catcccggaa agcgacagca agtctaataa ggggcaggtg gttaaggtgt
      361 atctggaacg gctgatggac aaggcgggga atggaatatt tgacaataag acagtaacaa
      421 taaaaataat tgttgggggc gcgcgctcgg gagtttattt tgaaaaggac aaccggatca
      481 ttacttacgc cctggcagat tattcagaag aagaattggc caagatgttt ttcttttttg
      541 aggaatttac cgtaaggctt ggcttgttct acatcggcga ggaaaccggc gatatttact
      601 cggagagctt cctgcgggct gacccgttga ctcaaggatt tgtggaactg ggaaaagctg
      661 tggttgcccg ttttgccacg gaggcttccg cgaaaggccc ggcggaaggg cgttatcgtg
      721 gatatgagaa aaagattgga aaagggcctt tagtggataa aatcagttta tttaccagcg
      781 gtaaaaaaga agattctctg cccgattatg ccgtagcggc tatcccgaaa gaggcggtga
      841 atatttccga tgaggcctta ctgaaagcgg ttaaggagat tgagggtatt ttgaatcagg
      901 aatttgtctc tgaagccgat gaagcgcgtt tggcaaagct tttggaatca gttaaaggct
      961 atggccgggg ccgccagggc cgctttattg aaaatagcgc tttaactctg gcccgcctgg
     1021 cattttatga gtataaaaaa tccaagctga tctggccgtt attttacggc agtaacttgc
     1081 ttcaacagaa ggcgctgggc gtatggtata agtatatcgc gccggcgctt aggccagaat
     1141 tcggggtagg cacaacccgt cagcattcct attttgaggg tggatttggc ggggcagagg
     1201 tatatatgcc gctttttgtg gatgtggtaa gctccttaga tgaaattaga aagtttcagg
     1261 aacccttaaa gacctatggg ttagccaggg attatcttaa tggtttatat gacgatgaga
     1321 tcttgcgttt atatcttgaa gcccaggccc aggcattctc aaccggcggg gatatttcac
     1381 ttgagcagtt atccgcggac ggaacaatga aacggatcaa gcgggaagtt gaggtaaagc
     1441 gggataacgc catcctgcgc ctcaaaggcc ttgcttctga cttagggcgt attcaggcct
     1501 accgtttatt tggaagattt acggaattat ttaccgcgat gattgaacag gatgccttgc
     1561 caaaagcgca tactgttaaa gttgataaga aaacgccggt aaaaaagcag ccgggaacag
     1621 aaaaggaaga aacaaaagaa tccgctccgg ccaaagaggg agacttaaaa gagaagttat
     1681 tccccggcaa ggattaccgc cggccattta taattgccgg caatcaaaag gcattcagcc
     1741 gcaaagaatt tgacgatttt tataagaata ttcccggaaa agtaaataac gaaggggaca
     1801 gcctattgtt tactcctttt gagcggatca cggaagttat tggcgagccg gttaatctgc
     1861 gccagatggt gcgttcagct gaaaatctat ttgtcggggc gcaggatatc tgcggcaatg
     1921 ggtatggagc ttataccggt cagaccccgg ctgaagaagt aaaacggatg ggaggggagt
     1981 tcgtcctgct gggtttggcg gacagggcta attatctggg agagaaaaat agcgaggttg
     2041 cccaaaag
//
LOCUS       DATDUB010000079         2046 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1555280, whole genome shotgun sequence.
ACCESSION   DATDUB010000079 DATDUB010000000
VERSION     DATDUB010000079.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2046)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2046)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2046
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1555280"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..770
                     /locus_tag="VJA84_01525"
     CDS             <1..770
                     /locus_tag="VJA84_01525"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HLD40839.1"
                     /translation="VLFGFLIILIFAMAARFVSWYFLARMYEPKFRHSHEARFSFPEF
                     IKRARESNFARFVFFVAGLNFCVNLAAPFFAVFMLRDLRFSYLTYTILIITVPVTTLL
                     LIQRWGRLADRVGNIRVLKFCACFIAGLPLPWLICRHPLFLALIQILGGFAWSGFNLC
                     VINFIFDSVSPAKRTRCFSYFNVINGFFICIGALIGGYLATHAPRLWGHQLLSLFLLS
                     SITRFTTVFIFSPKIKEVRAGVEAIKARGIFKNILWK"
     gene            761..1795
                     /gene="rlmN"
                     /locus_tag="VJA84_01530"
     CDS             761..1795
                     /gene="rlmN"
                     /locus_tag="VJA84_01530"
                     /EC_number="2.1.1.192"
                     /inference="COORDINATES: protein motif:HMM:TIGR00048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_function: GO:0016433 - rRNA (adenine) methyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0031167 - rRNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2503)-C(2))-methyltransferase
                     RlmN"
                     /protein_id="HLD40840.1"
                     /translation="MEITDIRDYSLEELEEVFRQWGLPGYNARQVFSWIYQKRRGSFE
                     EMTNLSLDLRNRLKERFVFKPLELEKLLDSADGTRKFLFRLPDGNLIESVLIPVKERL
                     TVCLSSQAGCPFFCGFCASGITGFKRNLSSGEITGQLLEISYKLNPESAITNVVFMGT
                     GEPLDNYENVLKALRTINSRDGFNVGARRITISTCGIIPGIKRLSREGLQIELSVSLH
                     GADERTRSRLMPVNKKYPLMDLISACKEYAALTKRQVTFEYVLIKGLNCSKEAADNLV
                     RLLTGWECKVNLLVYNPVKEFPYQPPQEREVEFFIWLLRKRGIVVTLRKSRGKDIDGA
                     CGQLRAKYLN"
     gene            complement(1860..>2046)
                     /locus_tag="VJA84_01535"
     CDS             complement(1860..>2046)
                     /locus_tag="VJA84_01535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40841.1"
                     /translation="EQQDKFKRILAQDQEQHSKLMRKLQKFGQRQGFPEGHGQTGAPD
                     ELPPPPGEELPEPPEAF"
BASE COUNT          439 a          461 c          544 g          602 t
ORIGIN      
        1 atgtcctttt tgggttcctg attatcctta tttttgccat ggccgcgcgg tttgtgagct
       61 ggtatttcct tgcccggatg tatgagccta aattccggca tagccatgag gccaggttta
      121 gtttcccgga gtttataaaa cgggccaggg aaagcaattt tgcccggttt gttttttttg
      181 tggccgggtt aaacttctgc gtcaacctgg ccgctccgtt tttcgccgtg tttatgctta
      241 gggacctgcg ttttagctac ctgacttata ccatattgat aattaccgtt ccggttacca
      301 cgcttttatt gatccagcga tgggggaggc tggctgaccg ggtggggaat atccgggtgc
      361 ttaaattctg cgcctgtttc atcgccgggc ttcctctacc ctggcttatc tgccggcacc
      421 ctttatttct ggccctgatc cagatcctgg gagggtttgc ctggagcggt tttaatcttt
      481 gcgtcattaa ctttatcttt gacagcgtaa gcccggccaa acgcacccgt tgtttctctt
      541 atttcaatgt gattaacggt ttttttatct gcataggggc cttgatcgga ggctatctgg
      601 caacacacgc gcccaggcta tggggtcatc agttgttgtc gctttttctc ctttcttcaa
      661 ttacgcgttt tacgaccgtg tttatatttt cgccgaagat aaaagaggtg cgcgccggag
      721 tagaggcaat caaggcgcga gggatattta agaacatatt atggaaataa ccgatatccg
      781 ggattactct ttggaggaat tggaggaggt tttccggcaa tggggcctgc ccggctataa
      841 tgcccggcaa gtattctctt ggatttatca gaagcgccgc ggctcttttg aggagatgac
      901 caatctttcc ctggatttaa gaaacaggct taaggagaga tttgttttta agcctttaga
      961 gttggaaaag ctcctggatt ccgcggatgg gaccaggaaa ttcctttttc gcctgccaga
     1021 cggcaatctt attgaatccg tgcttattcc ggtgaaggag cgtttgaccg tctgcctttc
     1081 ctcgcaggcc ggctgtccat ttttctgcgg cttctgcgcc agcggcataa ccggatttaa
     1141 gagaaatctt tcctcgggag aaataacagg tcagctttta gaaataagtt ataagttaaa
     1201 cccggagtcc gccattacca atgtcgtctt tatgggcact ggcgagccgc tggataacta
     1261 tgagaatgtc ttaaaggcgc tgcggacaat caattcccgc gacggcttta atgtgggcgc
     1321 gcgccgaata actatttcca cctgcgggat aatcccgggg attaaaaggc tttccaggga
     1381 gggcctgcag atagagctgt cggtgtccct gcacggcgcg gatgagcgga cccgctcccg
     1441 gcttatgccg gtaaacaaga agtatccttt gatggattta atttccgcct gcaaggagta
     1501 tgccgccttg accaagcgcc aggtaacctt tgagtatgtc ttgattaagg gcctgaactg
     1561 ctcaaaagag gcggcggata atttagtcag gctattgact ggctgggaat gtaaggtcaa
     1621 tcttttagtc tataatccgg taaaggaatt tccctatcag ccgccgcagg agagagaggt
     1681 tgagtttttt atatggctct tgcggaaaag ggggattgtg gttaccttga gaaagtccag
     1741 agggaaagac atagatggcg cctgcggcca actgcgggcg aaatatctta attaaaagat
     1801 ataaatttaa aaagggaagg cttttttaga agcctcccct ttttctgtat agcgcgagtt
     1861 taaaaggctt ccggcggctc tggcaattct tctccaggcg gaggcggtag ttcatcgggg
     1921 gctcctgtct gtccgtgtcc ttcaggaaag ccctgcctct ggccgaattt ctggagtttg
     1981 cgcatcagtt ttgaatgttg ctcttggtcc tgggcgagga ttctcttaaa tttatcctgt
     2041 tgttca
//
LOCUS       DATDUB010000080         5195 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_216435, whole genome shotgun sequence.
ACCESSION   DATDUB010000080 DATDUB010000000
VERSION     DATDUB010000080.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 5195)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5195)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5195
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_216435"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1590
                     /locus_tag="VJA84_01540"
     CDS             <1..1590
                     /locus_tag="VJA84_01540"
                     /inference="COORDINATES: protein motif:HMM:NF025925.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ASKHA domain-containing protein"
                     /protein_id="HLD40842.1"
                     /translation="SEPEDADKGESILDENIFVHSPLASKLYLDLPKPNLEDKISDLE
                     RLYRQIRSLQDIPVLQTGLSNIRRLGELLRSSDWKITATLGKRNGTTEIVIIEPGDTS
                     KRNFGFAFDIGTTTICGQLIDLNTKKILGTKAAYNKQASYGSDVITRIIFAQGVDGLE
                     KLHHAVIDEMNLMIQELTRENNIDLNDVTCCLCAGNTTMMHLLLRVDPTYIRREPYVP
                     TANFIPVVRAYEAGIKINPRGLLACVPGISSYVGGDITAGVLACGMDKTEKLSLLIDI
                     GTNGEIVLGSKDWLIACAASAGPAFEGSGVTCGMRASRGAIQKVKIDPRTFEVEYSTI
                     LDTPASGVCGSGYIDAIAELLRARIIDRGGKFDPKLIHRRIRQGEYGREFVIAFKEDT
                     GTTTDLIINEMDIENLKRAKGAIYAASAMLVNHMGFGFNDLEQVYIGGGFGTYVDMPN
                     AIFIGLLPDLPREKFVFVGNSSLVGARQILLSHQAIMDADEIAKKITYFELSVEPGYI
                     DEYMASLFFPHTDLTKFPSVQ"
     gene            1587..2354
                     /locus_tag="VJA84_01545"
     CDS             1587..2354
                     /locus_tag="VJA84_01545"
                     /inference="COORDINATES: protein motif:HMM:NF012369.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HLD40843.1"
                     /translation="MSLIIAIAGKGGTGKTTVSSLIVTQLAKRNKGSVLAIDADPNSN
                     LAEALGLKVKEGIGGIVDSVAKKPDIVPVGMSKDRYIDYRIQTSIVEETGFDLLTMGR
                     PEGPGCYCYVNNLLRTLIKNIANEYDYVVIDNEAGFEHFSRKTMRRADRLLLVSDSSE
                     AGLRAAQRIVNLVKELEIEIKNAQLILNRMPVGTEQCSVPAIRDKLSGLGIETIGIIP
                     EDEKVLALSRCGQSITNLDQSSKALGEIKKILDKILV"
     gene            2615..3580
                     /locus_tag="VJA84_01550"
     CDS             2615..3580
                     /locus_tag="VJA84_01550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018085948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA decarbonylase/synthase complex
                     subunit delta"
                     /protein_id="HLD40844.1"
                     /translation="MALEFIKEKWSNAVNTVVIGALKDEGGSRGSIVKCGAEEGLPFQ
                     FAESKMPRRPVIAMEVLDIAPDDWPQTLTSAIGPEMKNPVDWARKCEKEFKADLICLR
                     LAGAHPDAQNKPADDLIKTVKDVLKATTIPLIVIGCGEDKRDNEIMPLVSQAAKGEKI
                     LIGEVVQDNYKTLTASALADGHSIIAQSPIDINIAKQLNILISDMSMPLERIVINPTV
                     GALGYGLEYAYSIMERARLAALSGDKMLAMPFICFVGYEAWRAKEAKASDEEFPAWGK
                     QLERGIAWEALTATTFLQSGADILVMRHPQSVELVRNHIVELMKE"
     gene            3591..4379
                     /locus_tag="VJA84_01555"
     CDS             3591..4379
                     /locus_tag="VJA84_01555"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: protein motif:HMM:NF005719.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HLD40845.1"
                     /translation="MFIIGELINGMYKDIGKAIQTKDKSIIQKRALEQIKAGADALDV
                     NCGPASKDPLNDIQWLINSIQEVTDRTISIDSSRPQVIESGLKAAKNKVIINSTTADQ
                     DKLDALIPLALKYNAKLIVLTISKKGIPQNKDQRLELAATIVGACQEKGFPIEDIYLD
                     PIVMPVNVAQSQMKDILESIHDFKIISDPAPKTVVGLSNVSQGTCQRGLVNKTFLIMA
                     VGFGLDAAILDPLDKDLVDGAITSDLILNKHIYCDSYLDAYRKK"
     gene            4397..4470
                     /locus_tag="VJA84_01560"
     tRNA            4397..4470
                     /locus_tag="VJA84_01560"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:4431..4433,aa:Met,seq:cat)
     gene            4497..5015
                     /locus_tag="VJA84_01565"
     CDS             4497..5015
                     /locus_tag="VJA84_01565"
                     /inference="COORDINATES: protein motif:HMM:NF018028.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HLD40846.1"
                     /translation="MDFIKAGPNKRICAFLIDNGLASTFSLWMFVAFKSQVANWLAWT
                     ILMLFKDALSGRSPGKRFAGIQVVDEEGNPPRLSRTLFRNLFLVIPIFPIVEYIVMLK
                     DKQEGKRVGDKAAKTRVIDLKPLAKDITYLWISMAVVIILAAIQVCAALYIAKKYPWL
                     LIKMQPGIPSLK"
     gene            5015..>5195
                     /locus_tag="VJA84_01570"
     CDS             5015..>5195
                     /locus_tag="VJA84_01570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40847.1"
                     /translation="MLDRIITTVVFGLTLSGCTVHQFQKSAKHGGYVVARFAYVIPEY
                     TVDLENKAPSDFNLAK"
BASE COUNT         1337 a         1195 c         1422 g         1241 t
ORIGIN      
        1 agcgagccgg aagacgcgga taaaggagag tctatcctgg atgaaaacat ctttgtccat
       61 tctcctttgg ccagcaagct ttatctggat ttacccaagc ctaacctgga agataaaatc
      121 agcgacctgg agcggctcta ccggcaaatc cgttccttgc aggatatccc ggtgctgcaa
      181 accggactct ctaatatcag aaggctgggt gaattattac gctcaagcga ttggaagatt
      241 accgcgactt taggcaaacg caacggtacc accgagatcg tgatcattga gccgggagat
      301 acctctaaac gcaacttcgg attcgccttt gatatcggga ccactactat ttgcgggcag
      361 ttgattgacc tgaataccaa gaagatactc ggcaccaagg ccgcctacaa taagcaggcc
      421 tcttacggct cggatgtgat tacccggatc atctttgccc agggcgtaga cggcctggag
      481 aaattgcatc acgcggtaat tgacgagatg aacctgatga tccaggaatt gacccgggaa
      541 aataatattg atttgaatga tgtaacctgc tgtctttgcg ccggcaatac cacaatgatg
      601 catcttttat taagggttga ccccacttat atccgcaggg agccgtatgt gcctacggca
      661 aactttattc ctgtggtcag ggcctatgag gccgggatca agataaatcc ccgcgggctc
      721 ctggcctgcg tgcccgggat atccagttat gtgggggggg acatcaccgc cggggtcctg
      781 gcctgcggta tggataagac cgagaaattg agcctgttga ttgatatcgg caccaatgga
      841 gagatagtct tgggtagcaa agactggctg attgcctgcg cggcctcggc cgggccggcc
      901 tttgaaggca gtggggttac ctgcggtatg cgggcatccc ggggggcgat ccagaaggtg
      961 aagatagacc ccaggacctt tgaggtggaa tattcaacca tactggatac cccggcatcc
     1021 ggggtctgcg gttcaggcta tattgacgcg atagccgagt tgttaagggc caggatcatt
     1081 gaccgcggcg ggaagtttga ccctaaactc atccatcgac gtatccgcca aggggagtat
     1141 ggccgggaat ttgtgattgc ctttaaggaa gataccggca ccactaccga ccttataatt
     1201 aatgagatgg atattgagaa cctgaaacgg gcaaaaggcg cgatctacgc cgcctcggca
     1261 atgctggtga atcatatggg gtttggcttt aatgacctgg agcaggttta cataggcgga
     1321 ggattcggca cctatgttga tatgcctaac gccatattta tcggtttact gccggacctg
     1381 ccccgtgaga aatttgtctt tgtgggcaac agctccctgg tgggcgcgcg ccagatactt
     1441 ttgtctcacc aggcgattat ggacgcggat gagattgcca aaaagattac ttactttgaa
     1501 ctgtcggttg agccggggta tatagatgaa tatatggcgt ccttattctt cccgcatact
     1561 gatttaacta aatttcccag cgtccaatga gcttaatcat cgcgatagcc ggaaaagggg
     1621 gcacgggcaa gactacggta tcttcgctta tcgttactca attagccaaa cgcaataagg
     1681 gaagcgtcct ggctatagat gccgacccta actctaacct ggccgaggcc ctgggcctaa
     1741 aggttaagga aggtatcggc gggattgtgg attcagtggc caagaaaccg gatatcgtcc
     1801 cggtggggat gagtaaggac agatatattg attaccgcat ccagaccagc atagttgagg
     1861 agactggttt tgacctcttg actatgggcc ggcccgaagg cccggggtgt tattgttatg
     1921 tcaataatct tttaagaacc ttgataaaaa atatcgccaa tgagtatgat tatgtggtga
     1981 tagataatga ggccggattt gagcattttt cccgcaagac aatgcgccgg gcagaccggc
     2041 ttttattagt ctcggattcc tccgaggccg gcttaagggc ggcccagagg atagtcaacc
     2101 tggtaaaaga gctggagatt gagatcaaga acgcccagtt aatcttaaac cgcatgcctg
     2161 tggggacaga acagtgttcc gtccccgcaa ttagagacaa attatctgga ttagggattg
     2221 agacaatcgg gataatccct gaagatgaaa aggttttggc tttaagccgc tgcggccagt
     2281 ctataactaa tcttgaccag tcctcaaagg cattagggga aattaagaag atattggata
     2341 agatattggt atagaagctc gaggagattt tcaggtgaaa tttgaggtag ttatagaata
     2401 cgcgggtcct gtcaaggctg tattttcgca gggacgctca acgcgctcct gcggcgcgtt
     2461 tcgctcggcg taaatttttg cgccccgcct acggcggggt ccaagccgca aaaatttccg
     2521 tacgccctgc gaaaacacaa ccttgccacc cgcgcttatg tagcggtgcg atttatcgca
     2581 cttgtgatga tattttaaag gaaaggacga tgaaatggcg ctggaattta taaaggagaa
     2641 gtggtcaaac gcggtgaata cggtggtgat cggcgcgctg aaagacgagg gcggctcccg
     2701 gggctcgata gtcaaatgcg gcgctgaaga ggggctgccg tttcagtttg ccgaaagcaa
     2761 aatgccgcgg aggccggtga ttgcgatgga ggtcttggat attgcccctg atgactggcc
     2821 gcagaccctt acttcggcaa tcggcccgga gatgaaaaac ccggttgact gggcgcgtaa
     2881 gtgcgaaaaa gagtttaagg ctgaccttat ctgcctgcgc ctggccgggg cccatcctga
     2941 cgcccagaat aagcccgcgg atgacctgat aaagacggtc aaggatgtct taaaggccac
     3001 cacaatcccc ttgattgtta tcggatgcgg agaggataaa agggataatg agattatgcc
     3061 tcttgtttcc caggcggcaa agggtgagaa aattctaatc ggtgaggtgg tccaggataa
     3121 ttataaaacc ttgaccgctt ccgccctggc tgacggccac agtataatcg cccagtctcc
     3181 catagacata aacattgcca agcagttgaa tatcctgatc agcgatatgt ctatgccctt
     3241 ggagcggatt gtgattaatc ccacggtggg ggctttaggc tatggcctgg aatacgccta
     3301 ttccattatg gaacgggccc gcctggcggc cttgtccggc gataagatgc tggcaatgcc
     3361 ctttatctgt tttgtgggct atgaggcctg gagggccaaa gaggccaagg cctcggacga
     3421 ggaattcccg gcctggggaa agcaactgga gcggggcata gcctgggagg ccttgaccgc
     3481 gactaccttt ttgcagtcgg gagcggatat cctggtaatg cgccatcccc agagcgtgga
     3541 attagtcagg aatcatattg tggaattgat gaaagaataa gcgagggaat atgttcataa
     3601 tcggtgaatt gattaacggg atgtataagg atatcggtaa ggccatacag acaaaagaca
     3661 agtcaattat ccagaaaagg gccctggagc agataaaggc cggcgcggac gccctggatg
     3721 tcaattgcgg cccggcatcc aaagaccctt taaatgatat ccaatggctg attaactcca
     3781 ttcaggaagt aaccgaccgg acaatcagta ttgattccag cagaccccag gtgattgagt
     3841 ccgggcttaa ggcggcaaaa aacaaggtaa taataaattc taccacggct gaccaggata
     3901 agctggatgc ccttatccct ttggctttga agtataacgc caaactgata gtgttgacca
     3961 tcagtaaaaa aggcatacct caaaataaag accagcgcct ggaattggcg gcaacgattg
     4021 tgggcgcctg ccaggaaaag gggttcccca ttgaagatat ctatcttgac ccgatcgtga
     4081 tgccggtgaa tgtggcccaa tcccagatga aggacatcct ggaatcaata catgatttta
     4141 agattatttc cgaccccgcg cctaagacgg tagtcggcct aagcaatgtc tcccagggca
     4201 cctgtcagcg cggcctggtg aataagacct ttttgattat ggccgtgggc tttggcctgg
     4261 acgcggccat ccttgatcct ttagacaaag acctggttga cggggccatc acctcggacc
     4321 tgatcttgaa taaacacatt tattgcgatt cctatttaga cgcgtatagg aagaaataag
     4381 ttgtgaaaag aattacggcg gcgtaactca gcctggtaga gtagtcggct catacccgat
     4441 atgccactgg ttcaaatcca gtcgccgcca ttaaaacaga actaagagct aagaaaatgg
     4501 actttattaa agccgggccg aataagagga tttgcgcttt tctgattgat aacggcctgg
     4561 cctctacctt tagcctgtgg atgtttgtgg ctttcaagtc ccaggtcgcg aactggctgg
     4621 cctggaccat tcttatgctt tttaaggacg cgctttccgg ccgcagcccg ggcaagcgtt
     4681 ttgccgggat acaggttgtg gatgaagaag gcaatcctcc ccgcttatcc cggaccttat
     4741 tcagaaacct gttcttagtt atccctatat ttcccatcgt ggaatatatc gtaatgctaa
     4801 aggataaaca ggaaggtaaa agggtggggg acaaggctgc caagacaagg gtcatagatt
     4861 taaagccgct tgccaaggat ataacttatt tgtggatttc tatggcagtg gtgataatcc
     4921 tggcggctat ccaggtctgt gcggcgctct atattgccaa gaaatacccc tggcttctta
     4981 tcaagatgca gccgggcata ccttcgctaa aatgatgttg gacaggatta taacaactgt
     5041 tgtttttggc ttaactctgt ccggatgcac cgtgcaccag tttcagaagt ccgctaagca
     5101 tggaggctat gtggtggccc gtttcgctta tgtgattccc gaatacacgg tggatttgga
     5161 aaacaaggcc ccttcggatt tcaatctggc taaaa
//
LOCUS       DATDUB010000081         2223 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_554155, whole genome shotgun sequence.
ACCESSION   DATDUB010000081 DATDUB010000000
VERSION     DATDUB010000081.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2223)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2223)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2223
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_554155"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..853
                     /locus_tag="VJA84_01575"
     CDS             <1..853
                     /locus_tag="VJA84_01575"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: protein motif:HMM:NF012493.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HLD40848.1"
                     /translation="DPRIIIATPGRLIDHIGQHTLRLDDVVILVLDEADRMLDMGFAP
                     QIERILRLIPRERQTMLFSATIPPSIVKIASAYMHLPVRTEIAPTGTAAELVSQELFI
                     VSRDLKGRLLCELLKQYSGSVLLFIRTKIGARKVTRVLRTMGHSAAEIHADRTLAQRK
                     EALSGFKSGKYRILAATDIAARGIDVKGIELVINYDLPDDPENYVHRIGRTGRAGLKG
                     RSISLATPDQGDDVRNIEKIMRASIPLSKHPGIPAESFSSARKTPARTHHPHRSQRQD
                     FSRYHRR"
     gene            1220..1510
                     /gene="groES"
                     /locus_tag="VJA84_01580"
     CDS             1220..1510
                     /gene="groES"
                     /locus_tag="VJA84_01580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020258110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HLD40849.1"
                     /translation="MNIQPLGDRVIVKPLEAESKTKGGIVIPDTAKEKPQEGKVVAVG
                     KGKVSDDGKLQALEVKTGDKVLYGKYSGTEITTKEGEELLIMKEEDILAIIK"
     gene            1532..>2223
                     /gene="groEL"
                     /locus_tag="VJA84_01585"
     CDS             1532..>2223
                     /gene="groEL"
                     /locus_tag="VJA84_01585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014449688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HLD40850.1"
                     /translation="MAKQLLFSDEARRQILSGVEQLARAVKITLGPKGRNVVIDKKFG
                     SPTITKDGVTVAKEIELENVYQNMGAQMVKEVAEKTSDNAGDGTTTATVLAESIYREG
                     LKNVTAGANPMALKRGIEKAVEKVIEELKKFSVPIKDKKEVAQVASIAANCDVAIGDL
                     IAEAMDKVGKDGVITVEEAKSMATTLEVVEGMQFDQGYLSPYFATDTERMEVVMDDPY
                     ILIHEKKISSLK"
BASE COUNT          640 a          492 c          576 g          515 t
ORIGIN      
        1 tgacccgcgg attattattg ccacccccgg ccgactgatt gaccatatcg gccagcatac
       61 cctgcggctt gacgatgtgg ttattctcgt gctcgatgag gccgaccgca tgctggatat
      121 gggttttgcc ccgcaaatag agcgcatctt gaggctcatt ccccgggagc gccagaccat
      181 gcttttttca gccacaatac ccccaagcat agtgaagatt gcctccgcct atatgcatct
      241 tccggtgcgc accgagatag ccccgaccgg gaccgcggcc gagctggttt cccaggagct
      301 gtttatcgtc agccgggatc taaaaggaag gttgctgtgt gaattgctta aacaatacag
      361 cggttcggtg ctcttgttta tccgaaccaa aatcggggcc cggaaagtga cccgcgtctt
      421 aagaacgatg ggtcattccg ccgccgagat ccacgccgac cggactttag cccaacgcaa
      481 agaagcctta agtggcttta agtccgggaa ataccgtatc ctcgcggcta ccgacatcgc
      541 ggccagaggt attgacgtga aaggaattga actggtgata aattacgacc tgccggatga
      601 tccggaaaat tatgtccaca ggatcggccg caccggaaga gccgggttga aaggccggtc
      661 tatatctctg gccaccccgg atcagggaga tgatgtgcgc aatatcgaaa agattatgcg
      721 ggcatctatt cctttatcta agcatcccgg catccccgcg gaaagttttt cttccgcgcg
      781 taaaacgccg gcccggacgc atcatcctca tcgctcccag aggcaggatt tcagccgcta
      841 tcatcgaagg tgaaaaggct aaagttaagc ccgccaaaaa atatccctaa aaagaggtcg
      901 ctgaaaaatt cctaaaaact acacagcaac ctctgattac atagattact ccaacgaaca
      961 tttaatctct gtaatctgct tttaatcttt taatcagaga tcgctgccta tttctggatt
     1021 ttttcagcaa tctcaaaaaa aatacttgac aggatgtttt ttttggttat aattagcact
     1081 ctggcactta gagtgctaat ttagggggat aggttttcct gctcattgtc ccgacaaaag
     1141 attcgggatc ccgatttatc gggaaaggaa aaggtctaaa taaacaaaaa tcggttaaat
     1201 ttaaggagga ggtataggta tgaacataca accacttgga gacagggtaa tagtcaagcc
     1261 gctggaagcg gagagcaaga ccaaaggcgg gattgtcatt ccggatacag ccaaagagaa
     1321 gccgcaggaa ggcaaagtcg tggccgtggg taagggcaag gtttctgatg acggtaagtt
     1381 gcaggcctta gaggtaaaga ccggagataa agttctctac ggaaaatatt ccgggacgga
     1441 aatcactacc aaagagggcg aagaactgtt gattatgaag gaagaagata ttttagcgat
     1501 aatcaaataa caatcttaag gaggatttag aatggcaaaa caattattat tcagtgatga
     1561 ggccaggcgc cagattttaa gcggcgtgga acaactggcc cgggcagtca agataaccct
     1621 tggccccaag ggaagaaatg tagttattga caaaaaattc ggctcaccca ccattactaa
     1681 ggatggggta accgtagcca aagaaattga gctggagaat gtctatcaga atatgggcgc
     1741 ccagatggtt aaagaggtag ctgaaaagac ttcggataat gccggagacg gcaccaccac
     1801 cgcgaccgtt ttagcggagt cgatctaccg cgaggggtta aagaatgtaa ctgccggggc
     1861 taatcctatg gctttaaaaa gagggattga gaaggcagtc gaaaaggtaa tcgaggaact
     1921 gaagaagttt tctgttccaa tcaaagataa gaaagaagtg gctcaggttg cttctattgc
     1981 cgctaactgc gatgtcgcta tcggagattt gattgccgag gcaatggata aagtgggtaa
     2041 agacggggtt attaccgtgg aagaagccaa gtcaatggct accaccctgg aagtggtcga
     2101 gggtatgcag tttgaccagg ggtatctctc tccttacttc gcgactgata ccgagagaat
     2161 ggaagttgtt atggatgatc cttatattct catccacgag aagaaaattt cttctttgaa
     2221 gga
//
LOCUS       DATDUB010000082         4846 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_2223567, whole genome shotgun sequence.
ACCESSION   DATDUB010000082 DATDUB010000000
VERSION     DATDUB010000082.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 4846)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4846)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4846
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2223567"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1235)
                     /locus_tag="VJA84_01590"
     CDS             complement(<1..1235)
                     /locus_tag="VJA84_01590"
                     /inference="COORDINATES: protein motif:HMM:TIGR03710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:acceptor oxidoreductase subunit alpha"
                     /protein_id="HLD40851.1"
                     /translation="MKTDITIKISGEAGQGLQTMGQLIVRALARSGLNVFANQVLQSR
                     IRGGHNWFQIRVSDAPVLVPCDTTDILVALDNESSCHLKELKKDSIVIFDSSSVKITT
                     DKGILLDLPLEKIARESAGNKLMSNMAAVGAVCGLLEFETNILSDLIRESLGLKGRDI
                     AELNIKAAQAGYDYVYKKVPGNSFSLLGCSRMAPKMLLGASESIALGALAAGCKFISA
                     YPMSPSTGIMTYLASKSEEFGIVVEQSEDEIASINIALGASYAGVRAMTASSGGGFAL
                     MVEGLSLAGMTETPIVIVDAQRPGPATGLPTRTAQEDLEYVIFTGHGEFPRAVLAPST
                     IEDAFYAAVKAFDLADKYQIPVIILSDQLLADSFSTVEDFDIDSLKIQRHILTDEELK
                     KIIAVLISVIASEAKQSLTT"
     gene            1374..1607
                     /locus_tag="VJA84_01595"
     CDS             1374..1607
                     /locus_tag="VJA84_01595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013303156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF433 domain-containing protein"
                     /protein_id="HLD40852.1"
                     /translation="MHEERIVVDPEICFGKPCIKETRIPVYMILELIEQGLTTKEIIK
                     QCYPDITPADIKACIHYAAGILKNEEISIQEVA"
     gene            complement(2125..3018)
                     /locus_tag="VJA84_01600"
     CDS             complement(2125..3018)
                     /locus_tag="VJA84_01600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40853.1"
                     /translation="MIIRLKIVKDQNNRRYPAIFVEDDHSYGPEAKDKLYALLDILSR
                     RTGLPIVSSNYGGGEKGRYEITHFRGLSRFDYSDTFGKEIKGKITSGLYYQADPETLT
                     SGLKLYFKPVSEGSEVETEKKYGLDLVKMMEKDETGNKKSLPGREGDGVGSLISQTKK
                     VSSSLTNVYKEGTDKKGGIAFNVLPIQTESVALSVLGSFPGANAFKGDQAAEWSQIQA
                     VFNAGIRPSVQRISEYTAASASSALANERVDQVRVMLADILRRDEESEKLKPAEEALK
                     QLLTQLESNNPAQELQLAYRR"
     gene            3321..3656
                     /locus_tag="VJA84_01605"
     CDS             3321..3656
                     /locus_tag="VJA84_01605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40854.1"
                     /translation="METIMNANIKKERLKLTPEQLFNIYLECSAPGALVKTILERYGL
                     RPWDLVAIRKKVKAAAMEALANPRKLGRKRQVIPVEQYQQVSKELGETKDALAAVGHE
                     LSLLKKRTS"
     gene            3707..4681
                     /locus_tag="VJA84_01610"
     CDS             3707..4681
                     /locus_tag="VJA84_01610"
                     /inference="COORDINATES: protein motif:HMM:NF025063.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="integrase core domain-containing protein"
                     /protein_id="HLD40855.1"
                     /translation="MINAINEAVSQGLSQKRACGIFGIAPRKLRRWANPKPFKPRTAW
                     NKALAHERDAIEAAAWAPELLGKPVSHIFVHGHESGKFFASLSTVYRTLKAKNMVEPM
                     RNWQRRTPYVSAHSLLDEGFSLLCYDGTQFRIDSGIIVWAIPVMILPQRYLLHIGHAI
                     NGISASDLTRSVKEAYALLPEHLTVKLVAHSDRGSAMKASSTRRVIKELLGAPVHYGR
                     PHTPDDQSWIEAFIRTLKYHREIPQSFKLVDDVLSWLDRFPDIYNNDPHSSLSYVTPL
                     QALSGQKEVILNQRKQNLATARLLRYTAWKVSRSSLLPAASEVIMQPA"
BASE COUNT         1280 a         1224 c         1055 g         1287 t
ORIGIN      
        1 gtcgtaagag attgcttcgc ttcgctcgca atgacgctaa ttaggacagc aatgattttc
       61 tttaattcct catctgtcag gatatgcctc tggattttaa ggctgtcaat gtcaaaatcc
      121 tccacagtgg aaaaagaatc cgccaggagc tggtcgctta agataatcac cggtatctgg
      181 tatttatccg ccaggtcaaa ggcctttacc gcggcataaa aggcgtcctc tatagtggaa
      241 ggggccagca ctgcccgggg gaattcccca tgtccggtaa aaatcacata ttccagatcc
      301 tcctgggcgg tgcgggtagg caggcccgtg gccggaccag gcctctgggc atccacaatc
      361 actatcgggg tttccgtcat ccccgcgagg cttaaaccct caaccatcaa ggcgaatccg
      421 ccgccgctgg aggcggtcat tgcccggacc ccggcataag acgcgcccaa ggctatgttt
      481 atggaggcta tttcatcctc ggactgctcc accactatgc caaactcctc ggatttagag
      541 gccagatagg tcattatccc ggtagagggg ctcattggat aggccgagat gaatttacac
      601 ccggcggcta aagcccccaa agctatagat tcgctggcgc caaggagcat cttaggcgcc
      661 attctggaac agcctaagag agaaaagcta ttgcccggga cttttttata cacatagtca
      721 tatcctgcct gggcggcttt aatattcaac tccgcgatat cccggccctt tagcccaagg
      781 ctctcccgga tcaaatcaga aagtatattt gtttcaaact ccaataaccc gcagaccgca
      841 cccactgccg ccatattgga catcagctta ttcccggcgc tctcccgggc tatcttctca
      901 agcggtaaat ctaataatat ccctttatcc gtcgttattt taactgatga ggaatcaaag
      961 ataactatag agtctttctt taattctttg agatggcagg aactttcatt gtccagagca
     1021 accaggatat ccgtagtatc gcaaggaacc aagaccggcg cgtcagaaac ccggatttga
     1081 aaccagttat gccctccccg tatcctggac tggagcacct ggttggcaaa gacattcagg
     1141 ccgctcctgg ccaaggccct gacaatcaac tgccccattg tctgcaggcc ctgcccggcc
     1201 tccccggaga tctttatggt tatatccgtc ttcaattctt cttactcccc cctgtataat
     1261 ccctatttta ttaccctcct tagaaagcgt caatgataat cttacggtct gtaaatcatc
     1321 ttaacttctg tagatagttg tgttatcttt ttaaaagaaa ggagttaaaa attatgcacg
     1381 aagaaagaat tgtggttgac cctgaaatct gttttggaaa accctgtatc aaagaaacga
     1441 gaatccctgt ctatatgatt ctggaactta ttgagcaagg gctgaccacc aaagaaatta
     1501 tcaaacaatg ctatcctgac atcacccccg cagatatcaa agcttgcatt cattatgccg
     1561 ccggtatcct caaaaacgaa gagatctcta ttcaagaggt cgcttaaatg aatttttttc
     1621 cgaccattgc ttcttcgcct gcggcataaa cctcttgcgt gaagcgggtt atgatattat
     1681 taaggctagc gatgtgggac tgcaaaaggc gactgatgaa gaaattgttc ctttctgcag
     1741 aagagaaaat agaattatcc ttacccttga caccgatttt gccagcctgt ataaatttcc
     1801 tctgggaagt cataaaggaa ttgtggtctt tagaattagt ccctttttaa tcctgccgcc
     1861 ctcttgggta ttttgaaacc tatggtagaa aaaaatatgt ttactctttt cccggatgct
     1921 ttggtaattg ttagagataa gaaaatcagg attgtccgac ctggaagtcc tactgagact
     1981 atctgaggtt cccgccacct cctcccccgc ctctatatcg cgcaaagctg cgcaagcgag
     2041 atttccgagc gtttgtcctg cgaaattcga ataatttatt aagattgacg gggtcaaggt
     2101 ttttgtcttc ttgataagtc ttgcctacct gcggtaagca agctgaagtt cctgggcggg
     2161 attattagat tcaagctggg tgagcagttg ctttagggct tcttccgcgg gcttaagctt
     2221 ttcgctttcc tcatcgcgcc ggaggatatc ggcaagcata acccgcacct gatctactct
     2281 ctcattagca agggccgaag acgcggacgc ggccgtgtat tcgcttattc gctggacaga
     2341 cggccggatc ccggcgttaa agacggcttg aatctgggac cattcagcgg cctgatcacc
     2401 cttaaaagcg ttagccccag ggaaagagcc taaaacagac aaggcaacag attcggtctg
     2461 aataggcagg acattaaagg caatgccgcc ttttttatct gtaccctcct tataaacatt
     2521 ggtcagagat gaagacactt tctttgtctg cgagataagg ctaccaacac catctccttc
     2581 tcgaccaggc aaactttttt tattgccggt ctcatccttt tccatcattt ttactaaatc
     2641 taaaccatat tttttctctg tttctacttc gctcccctca ctcaccggct taaaataaag
     2701 cttaaggcca gatgtcagcg tctctgggtc tgcttgataa tataatcctg acgtaatttt
     2761 ccccttaatc tcctttccaa atgtatcaga atagtcaaac ctggaaagtc ccctaaaatg
     2821 tgtgatttca tatcttcctt tttctccgcc tccgtaatta gagctaacta tcggcaggcc
     2881 ggtacgccgc gataagatat ccagaagcgc ataaagctta tctttagctt ctgggccata
     2941 tgaatggtcg tcttcaacga atatagcagg atatctgcgg ttattttgat ccttcactat
     3001 ctttagcctt ataatcatcc tgctgagaat ttctccctta tttcccgatg ccgctaccgc
     3061 cttattggtt ccgttaacca gatatccagt cagtcctcta ttaagattac tgctgtaaat
     3121 acaattttga catgctgtaa attctttaga atgcccgata cccgtttttt cagcgacagt
     3181 gacctcaaag ggaaggatta attaactttt aggcattggc ggttaatttt acaaaagggc
     3241 tcaaaacttt ttacggtagg aagccctaca atcgacgatt tgcctaaaaa agagtataat
     3301 atacccaaag gaggccacca ttggaaacta taatgaacgc gaatataaag aaagaacgct
     3361 taaaactcac cccggaacag ctcttcaaca tatacctgga atgctccgct ccgggtgctc
     3421 tggtaaaaac gatcctggaa cgctacggct taaggccctg ggacctggtt gccatacgca
     3481 agaaggtcaa agccgcggcc atggaagccc ttgccaatcc caggaaactc gggagaaagc
     3541 gccaggttat accggtagag cagtatcaac aagtatcgaa agaactcggc gaaaccaaag
     3601 acgcacttgc tgccgtgggg cacgagttgt ccttgttaaa aaaaaggacg agttagggct
     3661 taaagggccg ttaaacggcc attttaaact tgaggtcaaa agaactgtga ttaatgccat
     3721 aaacgaagct gtcagtcaag gcctttccca gaaacgcgct tgcgggatat tcggtattgc
     3781 tccccggaaa ctgcgcagat gggcaaatcc gaagcctttt aaaccccgga ctgcctggaa
     3841 taaggcgctt gcgcatgaac gcgatgctat tgaagccgct gcctgggcac cggagcttct
     3901 cggtaagccg gtaagccata tcttcgttca cgggcacgaa tccggcaagt tctttgcctc
     3961 gctatctacg gtttaccgca cgctgaaagc taaaaacatg gttgagccaa tgaggaattg
     4021 gcagcgcagg actccttatg tcagcgccca ttcgctctta gacgaaggct tttcgctcct
     4081 ctgctatgac ggtacgcagt ttaggataga ttccggtatc attgtctggg ctattccggt
     4141 gatgatcctg ccccagagat acctgctgca tataggacat gccataaacg ggatatccgc
     4201 gagtgatctt acgcggtcag tcaaagaagc ctatgccctg ttaccggaac acttgactgt
     4261 taaactcgtt gcccattcag acagaggctc ggcgatgaaa gcatcgtcta caagaagagt
     4321 tatcaaagag cttctcggcg cgcccgtcca ctacggacgg cctcatacgc cggatgacca
     4381 atcatggata gaggcgttta ttaggaccct caaataccac agggagatac cacagtcatt
     4441 caagctggtt gatgatgtcc ttagctggct tgaccgtttc cctgatatct acaacaacga
     4501 cccgcacagt tctttaagct atgttacccc gcttcaggcg ctctcgggtc aaaaggaggt
     4561 gatcttaaat caacgaaaac aaaatcttgc gactgcccgc ctgttgcgct atactgcctg
     4621 gaaagtcagc cgttcttcgc tgctcccagc agcttcagaa gtaatcatgc aacccgcttg
     4681 aggtcaaact cgctgaaaaa ttgcgcttaa gttattttta tcaatataga taatatccat
     4741 gactacccga actgtaattc cgcattcctg atataatcca tctataggca caagaaaagt
     4801 atttttaccg gcatgattct tatataaata tttttcttcc ataaga
//
LOCUS       DATDUB010000083         3662 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_2224887, whole genome shotgun sequence.
ACCESSION   DATDUB010000083 DATDUB010000000
VERSION     DATDUB010000083.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3662)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3662)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3662
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2224887"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(131..775)
                     /locus_tag="VJA84_01615"
     CDS             complement(131..775)
                     /locus_tag="VJA84_01615"
                     /inference="COORDINATES: protein motif:HMM:NF014325.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TrkA family potassium uptake protein"
                     /protein_id="HLD40856.1"
                     /translation="MYVIIVGCGRVGSELAKLLSSEGHNVVVIDKSPKSFDRLGRTFN
                     GVTLVGNGFDVELLKQAGIAQADAFCSVTNGDNSNIVAAQAAKKIFKVPKVIARVYDP
                     SRADIYKSLGLDILSGTILFASMLRDKIIESRFSSYLIESKDVGVLEIEVDEAMAGKT
                     AGEINLPGELMVVIIKGIKGVVLPEPKTKLHKNDVLMAVVKTESLDKVRKKFGI"
     gene            complement(777..1124)
                     /gene="rplT"
                     /locus_tag="VJA84_01620"
     CDS             complement(777..1124)
                     /gene="rplT"
                     /locus_tag="VJA84_01620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011989604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HLD40857.1"
                     /translation="MARVKTNVARKKRVKKVLKRAKGQWGDRSKQYLQAKRSLQHSDV
                     YAYRDRKKRKTEFRQLWIIRISAALRAAGLTYNRFINGLKKANVALNRKMLAELALND
                     APAFQKLIELSKG"
     gene            complement(1223..1420)
                     /gene="rpmI"
                     /locus_tag="VJA84_01625"
     CDS             complement(1223..1420)
                     /gene="rpmI"
                     /locus_tag="VJA84_01625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011344481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HLD40858.1"
                     /translation="MPKLKTRKGIRKRFRITKSGKIKHSKAGKGHLNSSKQEERKRKL
                     KRSSLVDKGQERMIKRMLPYG"
     gene            complement(1436..1951)
                     /gene="infC"
                     /locus_tag="VJA84_01630"
     CDS             complement(1436..1951)
                     /gene="infC"
                     /locus_tag="VJA84_01630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018704320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HLD40859.1"
                     /translation="MVAIQKYVRVNDRIRIAQARVIGPQGEQLGIVQIQKAMDMAEQY
                     ELDLVEVSPNSVPPVCRIMDYAKFKYEEEKKERQSKKRQHQVHLKEIRLKPNIEEHDY
                     QVKLKRLIEFLQKKDKVKVGMFFRGREMAHQELGRRIMERMVAESAQHSNVEKPPALE
                     GRAISMIIGPK"
     gene            complement(2116..>3662)
                     /gene="thrS"
                     /locus_tag="VJA84_01635"
     CDS             complement(2116..>3662)
                     /gene="thrS"
                     /locus_tag="VJA84_01635"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013707242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004829 - threonine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006435 - threonyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HLD40860.1"
                     /translation="MLEIVQKDAPFIRQELDKNKAGDLFRQMQEPYKVELINGLADNS
                     VSLYKTGDSFLDLCRGPHVNSTGQVKAFKLLSVAGAYWHGIETNPMLQRIYGACFETK
                     QELDQYLNNLEEAKKRDHRKLGPALGLFDIYHDKAGAGLVFYHPKGAVLRRIIEDYEK
                     DEHLKRGYQMVITPHIMRQELWQTSGHYEFYRQNMYTFKIEDKEFVLKPMNCPGHILI
                     YKSSLRSYRELPMRLFELGTVYRHERSGVLHGLLRVRGFTQDDAHIFCTSEQLKEEIK
                     KIVDFVFLTMRDFGFNDVSIELSTRPKDSIGRDDDWRRATSALEDSLKEKGLPYDINE
                     GDGAFYGPKIDIKLKDALKRKWQCATIQCDFALPGRFDLKYVDNEGKEKRPVMLHRVI
                     LGSLERFLGALVEHYAGAFPLWLAPAQAMIIPIRKEDEGYAAGIKEKLLAEGIRVDLD
                     CGNETLTKRIRNAELARYPYIIITGQKEAQAQKIAVRKRGAGDQGQTGVDEFIAKIQE
                     EIKNKS"
BASE COUNT          808 a         1034 c          749 g         1071 t
ORIGIN      
        1 aatatcctta gccgcctctt cgcagatgat cctatctttt tcaatcaaag ccacagtatg
       61 cttatccgcg gccagccttt tggccaagaa atgcccgatt ttacccgccc cgactataat
      121 aatatacatt ttatatcccg aatttcttcc tcaccttgtc caggctttcg gtcttcacca
      181 ctgccatcag cacatcattc ttatggagtt tggttttggg ttccggaagg actaccccct
      241 taatgccctt gattattacc accatcaatt ccccgggcag gttgatttcc cccgcggtct
      301 tgccggccat agcctcatcc acctcaatct ccaggacccc cacatccttg ctttcaatca
      361 ggtagctgga gaaacggctc tcaatgattt tatcccggag cattgaggca aaaaggatgg
      421 tcccgcttag gatatccagg cctaaagact tgtagatatc cgcccggctg gggtcataga
      481 ccctggcgat caccttaggc accttgaata tctttttagc ggcctgggcg gcaacgatat
      541 tgctgttatc gccgttagta acgctgcaaa aggcgtcggc ctgggcaata cctgcctgtt
      601 tcaaaagctc aacatcaaag ccgttgccca ccaaagtgac cccgttaaag gtgcggccca
      661 accggtcaaa gcttttgggg cttttgtcaa tgactaccac attatggccc tcgctggata
      721 aaagcttggc cagctccgaa cccacccttc cgcagccgac tatgatgaca tacattctat
      781 cctttagata attctatcaa tttctgaaat gccggggcgt cgtttagcgc caattccgcg
      841 agcatcttgc ggttcagggc cacattcgcc ttttttaatc cattgataaa acggttatag
      901 gtcaagcctg ccgcccttag cgccgcgctg atcctgatga tccaaagctg gcggaactcg
      961 gtcttgcgct ttttgcggtc ccggtaggcg tagacatcgc tgtgctgaag cgaccgtttt
     1021 gcctgcaggt attgcttgga acgatcaccc cactggccct tagccctctt gaggaccttt
     1081 tttaccctct tttttctcgc gacattagtt ttaactcttg ccatttcatc tcccagttaa
     1141 aagtaaataa ctatgggtct atagttgatg gtctatggtt tctgtctttt attgactatc
     1201 gaccctttat tttttacttt atttatccgt acggcagcat cctcttaatc atccgctcct
     1261 gccccttgtc caccaaagac gacctcttca gcttgcgctt gcgctcttcc tgcttggaag
     1321 aattcaaatg ccctttgccg gccttgctgt gtttaatctt gccggacttg gtaatcctga
     1381 atcttttcct tattcctttt ctggttttta gttttggcat atgtcctcgc tgatactatt
     1441 ttggtccaat tatcatggaa atggccctgc cttcaagggc cgggggcttc tccacattgc
     1501 tatgttgggc gctttcggca accatccgct ccataatcct gcgccccaat tcctgatggg
     1561 ccatctcccg gccgcggaaa aacatcccga ccttgacctt gtcttttttc tgcaagaact
     1621 caatcagccg ttttaatttc acctgatagt cgtgctcttc aatgttaggc ttgagccgga
     1681 tttcctttag gtgcacctga tgctggcgtt tcttgctctg gcgctccttt ttctcttctt
     1741 cgtatttaaa tttcgcgtaa tccattatcc ggcataccgg ggggacgctg ttgggagaaa
     1801 cttccaccag gtccagctca tactgttcgg ccatatccat agccttttgt atctgcacaa
     1861 tccccaattg ttcaccctgc gggccaatca ccctcgcctg cgcgatccta atcctatcat
     1921 ttactcttac gtacttttga atcgcaacca cctcctttta ttatatccct ttgccttatt
     1981 aaccaatgtt actctgatta aatgacaaat atcaaagcac aaatgtcaaa ataaattcaa
     2041 aactcaaatg acaaaaattt agtcatttgg attttggatt tgtcttgtca tttgaatttt
     2101 gtcatttgtc attcattatg atttattctt gatctcctcc tgtatcttag cgataaactc
     2161 atccacccct gtttgcccct gatcaccggc cccccttttt ctaacggcaa tcttttgggc
     2221 ctgggcctct ttctggccgg taataattat ataaggatac ctggccagct cggcattgcg
     2281 gatccttttg gtcagggtct cattgccgca gtccaaatcc accctgatgc cttcggccag
     2341 gagtttctcc ttaatgccgg cggcatatcc ttcgtcctct ttcctgatcg ggataatcat
     2401 tgcctgggcc ggggcaagcc acaagggaaa ggccccggca taatgttcca ccagcgcccc
     2461 caggaaacgc tccaatgacc ccaggattac ccggtgcagc attaccggcc gtttttcttt
     2521 tccttcatta tccacatatt ttaaatcgaa ccttcccggg agggcaaaat cgcactggat
     2581 agtggcgcat tgccactttc tctttaaggc atccttcagt tttatgtcta tcttaggtcc
     2641 gtaaaaggcc ccgtctcctt cgtttatatc gtaagggagg cccttctctt taagcgaatc
     2701 ctccaaggcc gaggttgccc tccgccaatc atcatccctg ccgattgagt ccttgggccg
     2761 ggtgcttaat tctatggaaa catcgttaaa accaaagtcc cgcattgtta aaaagacaaa
     2821 atccacaatc ttttttatct cctcctttaa ctgctctgac gtacaaaaga tatgggcgtc
     2881 atcctgggta aacccgcgca cccgaagcag tccgtgaagc accccggagc gctcgtggcg
     2941 gtagaccgtc cccagctcaa aaagcctcat cggcaattcc cggtaactgc gcaaagacga
     3001 cttataaatc aggatatgcc ccgggcagtt catcggcttt aagacaaact ccttgtcttc
     3061 aatcttaaag gtatacatat tctggcggta aaactcataa tggccggagg tctgccataa
     3121 ttcctgccgc ataatatgcg gggtaatcac catctggtaa ccccgcttta agtgctcatc
     3181 tttttcataa tcctctatga tccggcgcaa gacagcccct ttaggatgat aaaaaaccag
     3241 gcctgccccg gccttatcgt gataaatatc aaaaagccca agggccggcc ctaatttgcg
     3301 gtggtcgcgt ttcttggcct cttccaggtt attcagatat tggtctaatt cctgtttagt
     3361 ctcaaaacag gcgccgtaga tacgctggag cataggatta gtttctatgc cgtgccaata
     3421 cgccccggcc accgaaagca gtttaaaggc cttgacctgg ccggtagaat tgacatgcgg
     3481 cccccggcag aggtctaaga agctgtcccc ggtcttatag agcgaaaccg agttatcagc
     3541 aagcccgtta atcaactcca ccttgtaggg ctcttgcatt tgccggaaca ggtccccggc
     3601 cttattttta tccagctcct ggcggataaa aggcgcgtct ttctggacaa tctccagcat
     3661 ct
//
LOCUS       DATDUB010000084         2070 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_2225207, whole genome shotgun sequence.
ACCESSION   DATDUB010000084 DATDUB010000000
VERSION     DATDUB010000084.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2070)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2070)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2070
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2225207"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            73..279
                     /locus_tag="VJA84_01640"
     CDS             73..279
                     /locus_tag="VJA84_01640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40861.1"
                     /translation="MKKISFLFLMMIFISGCYILQAQSPGQTYHNYDRQYTFEIVSEP
                     GGVKIEINNFMFQLTRGEKDATLS"
     gene            complement(312..393)
                     /locus_tag="VJA84_01645"
     tRNA            complement(312..393)
                     /locus_tag="VJA84_01645"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(357..359),aa:Leu,seq:gag)
     gene            complement(450..971)
                     /locus_tag="VJA84_01650"
     CDS             complement(450..971)
                     /locus_tag="VJA84_01650"
                     /inference="COORDINATES: protein motif:HMM:NF013052.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SET domain-containing protein-lysine
                     N-methyltransferase"
                     /protein_id="HLD40862.1"
                     /translation="MIKHSYLSAKVKARSSGIDRRGIFAVRPIKKGEVVCVWGGYVIT
                     QKEFDALAKKQFRNIDDYATKVADGFYLVSCKKGGLEDDDFFNHSCDPNCGIQGHLLM
                     TATRNIRRDEELTYDYAMTDADYDYSFKCNCGLKNCRKVITTNDWKSLPLRRKYKGYF
                     SWYVQAKIDKSKS"
     gene            complement(968..1978)
                     /locus_tag="VJA84_01655"
     CDS             complement(968..1978)
                     /locus_tag="VJA84_01655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40863.1"
                     /translation="MPRSKKALILGQGRIAGAVAYYLKKNNPSWRVSYLSSDREVRNA
                     DILIGALAGALGEKGLGLALKYRKNLIDISDLDPPFYLRRKKEIEKSGITVLPGCGFS
                     PGLVNLILGRELSSREGIKEIEIKAGSLSPRKLFFPFLWCFEDLALEHQIPSWQTLAG
                     KKRKFPAFAGYKKEKFFGIEAESYYCASGFENILDKIKLKNFSCRVLRPLGFGEFFGF
                     LKNEGFLSQENQAFTKKVVEANAEDNITLAQINISAKDRKVRWLIKACSKKNEALNSM
                     QKITAAPAAAMAGFLVSGRIKKAGLLFMEDIGGDEAVFKNFLSAIKDIVAAHCAATTH
                     GL"
BASE COUNT          544 a          523 c          432 g          571 t
ORIGIN      
        1 aaaaaccaga ccgcataaaa tacaggaata tcatataaag aaattattga atagaaataa
       61 gcgggagtaa atatgaaaaa gatttctttc ttattcttaa tgatgatttt tatttctggc
      121 tgttatatat tgcaagctca aagcccaggc caaacctatc ataactatga tagacaatat
      181 acttttgaaa ttgtatctga gccaggcggg gtaaaaatag aaataaacaa ttttatgttc
      241 caattaacca ggggcgagaa agatgccact ctatcttagc tcttaattct tagttcttag
      301 ttctgtttta atgcgcgggg ggggagttga acccccatac cttgcggcac aagaccctca
      361 ttcttgcgtg tctgccaatt ccaccacccg cgcgcaaagc gagattatta tataattacc
      421 aagccaaata gcaagcagga tttatatttt tagcttttgc ttttatctat ctttgcctgc
      481 acataccagg aaaaataacc tttgtatttt ctccgcaagg gcaggctctt ccagtcattg
      541 gtagtaatca ccttgcggca gttttttaag ccgcagttac atttaaaaga ataatcatag
      601 tcggcgtcgg tcatcgcgta atcgtaggtg agctcctcgt ctcttctgat gttccgcgtt
      661 gccgtcatta aaagatgccc ctgtatcccg cagttggggt cacagctgtg gttaaaaaag
      721 tcatcgtcct ccaggccgcc cttcttgcag gaaaccagat aaaagccgtc ggcaaccttg
      781 gtggcatagt cgtcaatatt cctgaattgc ttcttggcca gggcgtcaaa ttccttctgg
      841 gtaatcacat acccgcccca gacgcagacc acctccccct tttttatagg cctgaccgcg
      901 aatatccccc ggcggtcgat cccggaagac cgcgccttaa ccttagcgct taaataggaa
      961 tgtttgatca taaaccatgt gtagtggccg cgcaatgcgc ggccactata tctttaatcg
     1021 cagacaagaa atttttaaat accgcttcgt cccctccaat atcctccata aataaaagcc
     1081 ccgccttctt aatccttccg gaaaccagaa atccggccat agccgcggca ggggcggcgg
     1141 ttatcttttg cattgagttc agcgcttcgt tctttttaga acaggccttg atcagccagc
     1201 ggactttcct gtccttagcg ctaatattta tttgggccag ggtaatatta tcttcggcat
     1261 tggcctccac caccttcttg gtaaaggcct ggttttcctg gcttaagaag ccctcattct
     1321 tcaagaaacc aaagaactcg ccaaatccta agggccggag gacccggcag gagaaattct
     1381 ttagcttaat cttatctaaa atattctcaa atccgctggc gcagtaataa ctctccgcct
     1441 caatgccgaa gaatttctct tttttgtatc cggcaaaggc cgggaatttt ctctttttac
     1501 ccgcgagcgt ctgccaggaa gggatctgat gctccagggc caaatcctca aagcaccaca
     1561 agaaaggaaa aaataatttt ctgggggata aagagccggc cttaatctct atctccttta
     1621 ttccttcccg gctggagagt tcccttccca ggataagatt caccagcccc ggagaaaacc
     1681 cacagcctgg gaggaccgta atcccggatt tctcaatctc ttttttccgg cgcagataaa
     1741 aaggaggatc caggtccgag atatcaatca ggttctttct gtatttcaag gccaggccta
     1801 agcccttttc ccctaatgcc ccggccaatg ccccaattaa gatatccgcg tttctaactt
     1861 cccggtcgga agataaataa gaaactctcc aggagggatt atttttctta agataatagg
     1921 caaccgcccc ggcaatccgg ccctggccga ggattaatgc ctttttactt cgtggcatct
     1981 taaatctgcc agagtttggg catcactaag ctggcctggt ggatttgagg ggtgtaatat
     2041 ttgagcgagg cggccttcgg ccccaatctc
//
LOCUS       DATDUB010000085         2522 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1227742, whole genome shotgun sequence.
ACCESSION   DATDUB010000085 DATDUB010000000
VERSION     DATDUB010000085.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2522)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2522)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2522
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1227742"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..372
                     /locus_tag="VJA84_01660"
     CDS             <1..372
                     /locus_tag="VJA84_01660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015739051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CpaF family protein"
                     /protein_id="HLD40864.1"
                     /translation="GSMTTVHANSTHDVLSRLDSMILMAGVELPIRAIREMIASAVDV
                     IVHTARLSDGSRQVTQITEITGMKDEMHIGLQDIFSFRQTGVDSQGKVLGNFEPSGFI
                     PTFIEEIRLRGIKLSDDVFKK"
     gene            398..775
                     /locus_tag="VJA84_01665"
     CDS             398..775
                     /locus_tag="VJA84_01665"
                     /inference="COORDINATES: protein motif:HMM:NF014678.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF192 domain-containing protein"
                     /protein_id="HLD40865.1"
                     /translation="MPANPIKILNLTRNTTLAENTVIADSFFSRLQGLLGKDGLARGE
                     GLILKPCDSIHTFFMRFAIDAAFVDKNNRVIRLYHSLKSWRISGIFPRAAFCIELPAR
                     TLQFSFTQEGDQIEVSAPIGISL"
     gene            908..2506
                     /locus_tag="VJA84_01670"
     CDS             908..2506
                     /locus_tag="VJA84_01670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40866.1"
                     /translation="MSEGYYKINPEIRDFIVKEAGERPELGCRKLANLIQEKFGLEVS
                     KSSISAILKEEGLNRPVGRRSGENGRDAKFCVSTPLMIQNDTPSLVVQDENRQIQVVL
                     AQEKNPPELSPYLGCWFLKAAELCLGGLQAFSALLSSSLKEPVEELLAKNEALLYLPL
                     LGKKSSPYQGEAGRGTEETTDTHGFWGEALAAIIGRRYSNKDVQAHLESLKQLELANL
                     GLFVQESLEQKEVLGLKFILEDDMFFFIDGSTRSIWSKNHIPLEFSQGLSKVRDYLTN
                     TIIQDNSPLIGQASPGFANPTTDLLNFIAAFSGQKSDQAIKRIELYDNEDKIIESLEP
                     IPLKRHYFVLGIWPWQYPDRSILEKEGLRLIGCEKDAKEILAILTNLPENEWDDQRVI
                     SLYLERWPNLAAGYQDFLDKIGHYFEIKKTYSLPKKSQIVIPQGDNLDINQILDFWRL
                     KLNSFCQRHFLPLKYADADLSLLQECFYSLPGVVKAGEKAMEIIFPLTQGFLYPDDLA
                     YACQRVNEVDIRLGDGRRLKLLSK"
BASE COUNT          675 a          543 c          621 g          683 t
ORIGIN      
        1 ggctcaatga ctacggtgca cgccaactct actcacgatg tcttatcccg tttagattca
       61 atgatcttga tggccggagt agaactcccc ataagggcta tccgggagat gattgcttcg
      121 gcagtggatg tgattgtgca tacggctcgc ctttctgacg gctcacgcca ggtgacgcag
      181 attacagaga ttaccggtat gaaagatgag atgcatatcg gcctgcagga catattctct
      241 ttccgccaga ccggggttga ttctcagggc aaggtcttgg gcaattttga gccttccggt
      301 tttataccca cctttattga agaaatccgg ttgcggggga taaagctctc cgatgatgtc
      361 ttcaagaaat aaagccctgc cgggtgagtc attaaatatg ccggctaatc caattaaaat
      421 tctcaatctt acccgaaaca ccaccctcgc tgaaaatacg gtaattgccg atagtttttt
      481 tagccgtctc cagggtctct taggcaagga cggccttgcc cgcggcgaag gcctcatttt
      541 gaaaccctgt gattctattc atacgttctt tatgcgtttt gccattgacg ccgcctttgt
      601 ggataaaaat aaccgcgtga ttcgtcttta tcattcgctt aaatcctgga gaattagcgg
      661 gatattcccc cgggccgcct tctgtataga gcttcccgcc cggacactcc aattcagctt
      721 cacccaggaa ggcgaccaaa ttgaagtttc cgcgcctata gggataagtc tgtaggggtc
      781 agtgtgtagc agtggtcagc gtaagggggg tcagcgtgta ggggtcagcg tccgctgacc
      841 cagtgatatc gttgccttac agcaaccgct accctgtatt ctccgagcgg ctaaaaggag
      901 cgaggcaatg tctgaaggtt attataaaat aaatccggaa ataagagatt tcattgttaa
      961 ggaagccgga gagcgtccgg aattaggctg tcggaagctg gctaatctga ttcaggagaa
     1021 attcggctta gaggtctcta aatccagcat cagcgcgatc ttaaaagaag agggtttaaa
     1081 caggccggtt ggccggaggt caggagaaaa tggtagagac gcaaaatttt gcgtctctac
     1141 cccgttgatg atccaaaatg atacaccatc tttggtggtt caggatgaaa accgtcagat
     1201 ccaggttgtt ttagcgcaag agaaaaatcc gccagagtta tctccctatt tgggatgctg
     1261 gtttcttaag gccgctgagc tttgtttggg cgggcttcag gctttctccg ctcttttaag
     1321 ctcaagcctg aaagagcctg tcgaggaatt attggccaaa aatgaagcct tgctttatct
     1381 tccccttctg ggcaagaaat cctcccctta ccaaggggag gcggggaggg gtacagaaga
     1441 aacaacagat actcacggtt tttgggggga ggccttagcc gccatcatcg gcaggaggta
     1501 ttctaacaaa gatgtccagg cccatcttga atccctgaaa cagcttgagt tggcgaattt
     1561 agggcttttt gtccaggaaa gcctggaaca gaaagaggtc ttagggctta aatttatctt
     1621 agaggatgat atgtttttct ttatagacgg ctcaacgcgc agtatctggt caaaaaacca
     1681 tatcccttta gagttttccc aagggttatc caaagtcagg gattatttaa ctaataccat
     1741 aattcaagat aattctcctc taattggaca agcttcgcct ggtttcgcga atcctaccac
     1801 agacttgcta aattttatcg ccgctttttc cgggcaaaag tcagatcaag ctattaaaag
     1861 aattgagctt tacgataatg aagataaaat aatagaatct ctggagccga taccgctaaa
     1921 aaggcattat tttgtcttag gtatctggcc ctggcaatac ccggatagga gcatattaga
     1981 gaaagaaggc ttaaggctga taggctgcga gaaagacgcc aaagagattc tggctatcct
     2041 taccaacctt ccggagaatg agtgggatga tcagagagtg attagccttt atttagagcg
     2101 ctggccgaat ttagcggcag gctatcagga tttcttggat aaaattggac attattttga
     2161 gattaaaaag acctattctt taccaaaaaa gagccagata gtaatacccc aaggcgataa
     2221 tttagacata aaccagattt tagatttctg gcggctgaag ctgaatagtt tctgccagag
     2281 gcattttctt cctctaaaat atgccgatgc ggatctttcc ttacttcagg aatgtttcta
     2341 cagcctgccg ggagtcgtta aggctgggga aaaagcgatg gagatcattt ttcctctgac
     2401 tcaaggattt ctttatccgg atgacttagc ttatgcctgt cagagggtta atgaggtaga
     2461 tatccggctt ggggatgggc gaagactaaa gttgctttct aaatgaaagc gctttctcaa
     2521 aa
//
LOCUS       DATDUB010000086         3565 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1058304, whole genome shotgun sequence.
ACCESSION   DATDUB010000086 DATDUB010000000
VERSION     DATDUB010000086.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3565)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3565)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3565
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1058304"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..348)
                     /locus_tag="VJA84_01675"
     CDS             complement(<1..348)
                     /locus_tag="VJA84_01675"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HLD40867.1"
                     /translation="MITFVRLSKNYGQKILFENISFSINRGEKVGLIGPNGAGKSTLF
                     SLLLGEIEPSAGSIQIRKNIVIGHLAQESSFKSANTVLSELTQGDKRTLSLLKEKDEL
                     EQKNEAGSQRYGDI"
     gene            complement(399..995)
                     /gene="recR"
                     /locus_tag="VJA84_01680"
     CDS             complement(399..995)
                     /gene="recR"
                     /locus_tag="VJA84_01680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011096663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombination mediator RecR"
                     /protein_id="HLD40868.1"
                     /translation="MYPQTIENLIQELVKLPGIGRRSAERIVFYFLNDSPGDDAALLS
                     RRLLELKEKVRLCRRCHNLSEEEECLICRNPRRNRNLLCVVERPNDVTSIEKTGSFQG
                     LYHVLLGAIAPLDGKGPAELKIDSLLKRIQEEQIQEVIIATDSDTEGETTALYLAKVL
                     KPLEARLSRIGFGLPMGSNLEYADSATLAKSLESRRSL"
     gene            complement(1005..2666)
                     /gene="dnaX"
                     /locus_tag="VJA84_01685"
     CDS             complement(1005..2666)
                     /gene="dnaX"
                     /locus_tag="VJA84_01685"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:NF004046.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HLD40869.1"
                     /translation="MSYLVFARKWRPRNFDEVVGQDNVVQTLKNAIKNNRLAHAYIFA
                     GPRGVGKTSTARILAKSLNCQAGDNLNPCNKCPSCLEIAEGRSLDVIEIDGASNRGID
                     DIRVLRENVKFAPAGGKFKIYIIDEVHQITPEGFNALLKTLEEPPPYVKFIFATTHPQ
                     KIPSTIISRCQFLEFRRISNLNIIKQLREIACAEKIEAQDDVLLALAKASDGSMRDAE
                     SILDELVSFTKADIKLSDVYSVLGVVEQEYLFEMTQKIIKKDAASAIQFLDQLLDRGK
                     EPNQLLINLIEHYRNLMIAKVSASNQEKLLDLPLEVCQQITGQSRQISLEDILAGFNS
                     FVRVQETARYMDNIRIPFEVALVKLCHSPQLKSSPLPVPAMRQAVKEPQISPAPQLKS
                     SLQPQPARQAIPAKSVSSGASGEIHRNDHSKIPPSTDRLSKEAAIDFERVQQLWPEFL
                     ERVNKIKVSAAHYLEGAYPLKVSGAVLSIGFSHNLNFNKESLERKENLSVLESVWKAL
                     LNQEVKINLSLVKEVHHPAKAQSEEIDPAVQSAITAFNGRVVRKS"
     gene            complement(2908..>3565)
                     /locus_tag="VJA84_01690"
     CDS             complement(2908..>3565)
                     /locus_tag="VJA84_01690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40870.1"
                     /translation="AHRGKVKWMDMRRFKKIAAVSLVALLFSCSLASAMIKRPPARYT
                     VLVNSDIRHSDENFLANRLDMSFSKELTGKVTAKFSPFVEVRHNLERRKRERVSTGVE
                     LGLDFGGYFYAGEQLRQTWRSEPVYNRGIIKNTNMTEALSILKLSFPLLPKKDIKGYV
                     RGEYTYDFRLGQGVRVESIAGMLIPFGKSWEVNADWRHRDRIHADDCDTLEAGITYIF
                     "
BASE COUNT          867 a          913 c          871 g          914 t
ORIGIN      
        1 gatatcccca tatcgctggg agccggcctc attcttttgt tccagctcat ccttttcttt
       61 tagtaaagaa agcgtccttt tgtcaccctg ggtaagctcg gataaaaccg tgttcgcgga
      121 tttaaagctg gactcctggg ccaggtggcc gatgacaata tttttgcgta tctggatgct
      181 tccggcggaa ggctcgatct ctcccaataa cagggaaaaa agggtgctct tgccggctcc
      241 gttagggccg ataagcccca ccttttctcc ccggttaatg ctgaaagaga tattctcaaa
      301 aaggattttc tggccgtaat ttttggaaag gcggacaaag gtaatcatat ttattctcgg
      361 gatttacccc gttagagaac gcggttctct gacggggttt acaggctgcg gcgggattcc
      421 aaagacttgg ccagggtggc gctgtcggcg tattccaggt ttgagcccat aggcaggcca
      481 aaaccgatac ggcttaagcg cgcctccaaa ggcttaagca ccttggctaa gtataaggcg
      541 gtagtctcac cctcggtatc ggaatcagtg gcgataatca cttcctggat ctgttcctcc
      601 tggatccgct taagcaggct gtctatttta agctcggccg ggcctttgcc gtcaagaggg
      661 gcgatcgcgc ctaaaagcac atgatataaa ccctggaaac tcccggtctt ttcaatggaa
      721 gtcacatcat tgggcctctc caccacgcaa agcagattcc ggttacggcg gggattccgg
      781 cagatcagac attcttcctc ttcgcttagg ttatggcagc gccggcaaag gcggaccttt
      841 tcctttaatt ccagcaggcg ccggcttaac aaagcggcat cgtctccggg agaatcgttt
      901 aagaaataaa aaacaatcct ttccgcgctc ctcctgccta tgccggggag cttaaccaat
      961 tcctgaataa ggttttctat tgtttgggga tacatagcgc tccgttaact tttcctgacc
     1021 accctgccgt taaaggcggt gatggcagac tggaccgcgg ggtcaatctc ttcgctctgc
     1081 gctttagccg gatggtgaac ttccttaacc aagctaaggt ttatcttcac ttcctgatta
     1141 agcaaggcct tccagacgct ttctaagacc gacaggttct ctttgcgctc taaagactcc
     1201 ttattaaaat ttaaattatg tgagaaacct atgctcaaga cggccccgga aacctttaag
     1261 ggatatgccc cttccagata atgggccgcg gagaccttga tcttattcac ccgctccagg
     1321 aactccggcc agagttgttg gactctctca aaatcaatag ccgcttcttt agacaagcgg
     1381 tcagtagacg ggggaatttt tgaatggtca ttgcgatgaa tctctccgga ggcgcccgac
     1441 gaaacgctct tcgccgggat tgcctgcctt gccggctgag gctgaagtga agatttaagc
     1501 tggggcgcgg gagaaatttg cggctccttt accgcctgac gcattgccgg cacaggcaaa
     1561 ggtgaagatt taagctgggg cgaatggcat aatttaacca aggccacctc aaaggggatg
     1621 cggatattat ccatatacct ggcggtttcc tggaccctga caaaagagtt aaacccggcc
     1681 aggatatcct ccagagaaat ctgccgggac tgcccggtta tctgctggca gacctccagc
     1741 ggcaggtcca aaagcttctc ctggtttgag gcgctgacct tggcaatcat caggttacga
     1801 taatgttcaa tcagatttat aagcagttga ttaggctcct tgccgcggtc aagcagttgg
     1861 tcaagaaact gtatcgccga ggcggcatct tttttgatta tcttttgcgt catctcaaag
     1921 agatattcct gttccactac ccccagcacg gaatagacat cgcttaattt tatatccgcc
     1981 ttggtaaaag atacgagttc atccaggatg ctctcggcat cccgcattga gccgtccgag
     2041 gccttggcca gggccaagag gacatcatct tgcgcctcta tcttttcggc gcaggcaatc
     2101 tcccttaact gcttgatgat attaagattg gatatcctgc ggaattccag gaactggcag
     2161 cgggagatta tggtagaagg gattttctgg gggtgggtag tggcaaagat aaattttaca
     2221 taaggcgggg gctcctccag ggtttttaag agggcgttaa aaccttcggg ggtgatctgg
     2281 tgcacctcgt caattatgta aatcttgaat ttcccgccgg caggggcaaa ctttacgttt
     2341 tcccttaaga cccggatatc gtcaatcccg cggttagagg ccccgtcaat ctcaatcaca
     2401 tccaaactcc ggccctcggc aatctccagg caggaagggc atttgttgca gggattaaga
     2461 ttgtccccgg cctgacaatt cagggatttg gccaggatgc gcgcggtaga ggtcttcccc
     2521 accccccgcg gcccggcaaa gatataggca tgggccaggc ggttattctt gatggcgttc
     2581 tttaaggtct ggaccacatt atcttggccg accacctcat caaaattccg gggacgccat
     2641 ttacgggcaa aaactaaata agacatttag cagaggaaac aatcaagggt cgatagtcga
     2701 tggcctatgg tcaatacaat agactattca gactgtgtca taatctctta aaatgaccat
     2761 tttgtcattc tgagggagca gagcgaccga agaatctcgt cggtaattta aaagacgaga
     2821 tccttcgcta tcgctcagga tgacattgtg acacagtctg attgcccata gactatagac
     2881 ccttaattct ttaattttaa ttaagggtta gaaaatgtag gttatgccgg cttccagggt
     2941 atcgcagtca tcggcgtgga tcctgtcccg gtgccgccag tcagcgttta cttcccagga
     3001 cttaccaaaa gggataagca tcccggctat ggattctacg cggacgccct ggcccagtcg
     3061 gaagtcatag gtgtattctc cgcgaacata tcccttaata tcctttttcg gcagtaaagg
     3121 aaagctcaac tttagtatac ttaaggcctc ggtcatattg gtattcttga ttatcccgcg
     3181 gttataaacc ggctcggacc gccaggtctg gcgtagctgc tctccggcat agaagtaacc
     3241 gccaaaatcc aatcccagct ccactccggt agaaaccctc tcccttttgc gcctttccaa
     3301 gttgtgacgg acctccacaa aagggctgaa tttagcagta accttgccgg tcaattcttt
     3361 gctaaaagac atatccaaac ggttagccag aaagttctca tccgaatgac ggatatcgct
     3421 gttcaccaat acggtataac gcgccggagg cctcttaatc atcgccgaag ccaaagaaca
     3481 ggaaaacaac agcgctacca gactaaccgc cgctattttt ttaaatctac gcatatccat
     3541 ccattttact ttcccacgat gggca
//
LOCUS       DATDUB010000087         3548 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1059489, whole genome shotgun sequence.
ACCESSION   DATDUB010000087 DATDUB010000000
VERSION     DATDUB010000087.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3548)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3548)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3548
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1059489"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..229
                     /locus_tag="VJA84_01695"
     CDS             <1..229
                     /locus_tag="VJA84_01695"
                     /inference="COORDINATES: protein motif:HMM:NF024675.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="thioesterase family protein"
                     /protein_id="HLD40871.1"
                     /translation="AHQDIDYKSPAFYADVLSIETKVPKVSSASFVFEYTVTNKKTAQ
                     LIAAGKTVMVCVNKDIQPQKLPQEIRDKLLA"
     gene            231..1367
                     /locus_tag="VJA84_01700"
     CDS             231..1367
                     /locus_tag="VJA84_01700"
                     /inference="COORDINATES: protein motif:HMM:TIGR01910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M20 family metallopeptidase"
                     /protein_id="HLD40872.1"
                     /translation="MINRQRLIKLTQKLIRINSENPPGNEKEIVSFLRDYLVGFGLKS
                     RTYEFAKGRPNLIAQLRASDPRAKTILISPHLDTVPAGKGWKFPPFKGVIKDGRLYGR
                     GATDCKCNLAAAIEALNSLVEDRPRIANHILFAATADEESGSGLGLIPLLKKGILKAD
                     YALILDSDEFEIIIAQKGLIHFTVSVSWKKAHGAYPDQGVNAINIACGIIRDLEKYKF
                     SFQAHPLLKCPTINAGTIHGGDKVNMVADWCDFELDLRYLPGMSAKAVLADLKRLIAK
                     RAKKFKIKIDGIQAPYEIDKRHVLAESLLKCWSGHSKSAGFKGSEGATVITFFKERGI
                     PAVATGFGFRGCAHINDEYVRIDDLCRGAEALEEFLRGEIKFKT"
     gene            1515..2513
                     /locus_tag="VJA84_01705"
     CDS             1515..2513
                     /locus_tag="VJA84_01705"
                     /inference="COORDINATES: protein motif:HMM:NF021287.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAC2 family protein"
                     /protein_id="HLD40873.1"
                     /translation="MKITISLLKKPRLKRPILIAVWPGMGEVAFKLGVYIKDKLKMEE
                     FALLDAPELFPPGGVWIENSAITLPKPGTGRFYCYKNKNGANDIILFLSDAQPLLEHG
                     YEYCRRILQLARDLKVKTVFTFAAMPQAIEHNAQPQVWFAATDKKVLDEVNSLHLNLK
                     VLSSGQISGLNGLLLGVAKEMKFDGLCLLGEIPLFSIQIENPKASLAVLNKLGKMFKL
                     EVDASGLSEQARVMDQEIEKLINFIHAPSGEPQATAPIGEDEIEKIKKSLTLYTKLPQ
                     SAREKIEKLFQEVKTNISKAAELKKELDHWNIYKDYEDRFLDLFKKPGNTQEKKPN"
     gene            2518..3162
                     /locus_tag="VJA84_01710"
     CDS             2518..3162
                     /locus_tag="VJA84_01710"
                     /inference="COORDINATES: protein motif:HMM:NF012905.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family phosphatase"
                     /protein_id="HLD40874.1"
                     /translation="MKNKIKAIIFDLGNVLIGFDHRIGVKRILKHTPKSTQEIYDLFF
                     DSAFTREFEKGGISCLEFFAKVKDSLELRIGYAEFLPIWNEIFFAKPEMERFVASLNS
                     VRRLVLLSNINELHYEYLTAAFPYAFSLFSPDKIIPSFRAGFMKPDRQIYELALSAAG
                     VSRDEVVYVDDRLDLIEAASGYGIPSIQFKDIHQLRQEFLNLGIIQDADVPCPK"
     gene            3191..>3548
                     /locus_tag="VJA84_01715"
     CDS             3191..>3548
                     /locus_tag="VJA84_01715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40875.1"
                     /translation="MSFVITLSGCAVTGPYVSEEEIEQASEDLKVKALKFQIDYLAQV
                     NNIGYKILLKLPDEDKKGDFVYSGLLLSKNDKYFKRLYHLPSEAGVVIIGVVEDSPAA
                     KSGIMAGDILKKADGLA"
BASE COUNT          975 a          763 c          924 g          886 t
ORIGIN      
        1 ggcccatcag gatattgact ataaatcccc ggccttttac gcggatgttt taagcattga
       61 gactaaggtc ccgaaagtct catcagccag ctttgtcttt gaatacacgg ttaccaataa
      121 aaagacggcc caactgattg ccgctggcaa aacagtgatg gtctgcgtga acaaggatat
      181 ccagccccaa aagctccctc aagaaataag agataaactc ctggcgtaag atgattaacc
      241 gccagaggct gatcaagctg acccaaaagc tgatccggat aaattcggaa aaccctcccg
      301 gaaatgaaaa agagatcgtt tctttcttaa gggattacct ggttggattt ggcctgaaaa
      361 gcaggacata tgaattcgcc aagggccgtc cgaatctgat cgctcaattg agagcttcgg
      421 atccccgggc aaagaccatc ctgatcagcc cgcacttaga tactgtgccg gccggcaagg
      481 gctggaaatt cccgcctttt aagggagtga ttaaggatgg gcggctttat ggccgggggg
      541 ccactgattg caagtgcaat ctggcggcgg caattgaggc cttaaatagc ttggttgagg
      601 ataggccgcg gatagctaac cacatcctct ttgccgccac cgccgacgaa gagtccggct
      661 ccggattagg gctgatccct ttattaaaaa aaggcatttt aaaggccgac tacgccctga
      721 ttttagattc ggatgaattt gagatcatca tcgcccagaa agggctgatc cattttacgg
      781 tttcagtgtc ctggaaaaag gcccacgggg cctatcctga ccagggcgta aacgccatca
      841 atatcgcctg cgggataatc cgggacctgg aaaagtataa attcagtttc caggcgcatc
      901 ccttgcttaa atgtccgact atcaacgcgg ggactattca cggcggggat aaggtgaata
      961 tggtggcgga ctggtgcgat tttgagctgg acctaaggta tctgccgggg atgtccgcga
     1021 aagccgtcct ggcggactta aaaaggctta ttgccaaaag ggcaaaaaag tttaaaataa
     1081 agatagatgg catccaggcc ccttatgaga ttgataaaag gcatgtcctg gcggagtctt
     1141 tgcttaaatg ctggagcggg cattctaaaa gcgccggatt taaaggctcg gaaggggcca
     1201 cggtgatcac attttttaag gaaagaggca tcccggcggt ggccaccggt ttcggcttcc
     1261 ggggatgcgc ccacattaat gatgagtatg tgaggattga tgatctctgc cggggggcag
     1321 aggcattgga ggaattccta agaggagaaa taaaatttaa aacttaaaat tcaaaatgta
     1381 aaattgcaat tcaaaactca aagctaattt ttaagaatat tggtaaaaag catattaacc
     1441 ttaaagaata aatagttttt agttttagat tgtagttttg actttcgaat tttaaattaa
     1501 gagggaggaa ttttgtgaaa attaccatat cattgcttaa gaagccgaga ttgaaaaggc
     1561 cgattttaat cgcggtctgg ccggggatgg gtgaggtggc ctttaagctg ggggtgtata
     1621 taaaggataa gctcaagatg gaggagtttg ccttattgga tgccccggag ctttttcctc
     1681 ccggaggggt atggattgag aatagcgcca ttaccctgcc caagccgggg accggaagat
     1741 tttattgtta taagaataaa aatggggcca atgatatcat ccttttctta agcgacgccc
     1801 agccgctcct tgagcacggg tatgaatatt gccgcaggat actgcagtta gccagggatt
     1861 taaaggtgaa gaccgtcttc accttcgcgg ctatgcccca ggccatagag cacaatgccc
     1921 agccgcaggt ctggttcgcg gccacggaca agaaggtcct ggatgaggtg aacagcctgc
     1981 atcttaacct taaggtatta agttccggcc agatcagcgg gcttaacggc ctgctgctgg
     2041 gagtggctaa agagatgaaa tttgacgggt tgtgcctgct gggagagatc ccgcttttta
     2101 gcatccagat agaaaacccc aaggcctccc tggcggtctt gaataagctg ggaaaaatgt
     2161 tcaagcttga ggtggatgcc agcggccttt ccgagcaggc cagggttatg gaccaggaga
     2221 ttgaaaagct gattaacttt atccatgccc cgtctggaga gccgcaagcc accgcgccca
     2281 taggcgaaga cgagatagaa aagattaaga aatccctgac cctctatacc aagcttcccc
     2341 agtcggccag ggagaagatt gagaaattat tccaggaggt caagaccaat atctctaagg
     2401 ccgcggaatt gaaaaaggag ttggaccact ggaatatcta taaggattat gaggaccgtt
     2461 tcctagacct gtttaagaag ccgggaaaca cgcaggagaa gaagcctaat taaaactgtg
     2521 aagaacaaaa taaaggccat tatctttgat ctgggcaatg ttttgatcgg ttttgaccac
     2581 cgtattgggg taaaaaggat attgaaacat acccctaagt ctacccagga aatctacgat
     2641 ttattctttg attccgcttt tacccgcgaa tttgagaagg gaggcatctc ttgcctggaa
     2701 ttctttgcta aggtcaaaga tagcttagag ttaaggattg ggtacgcgga attcctgccc
     2761 atctggaatg agatattttt tgccaagccg gaaatggagc gatttgtcgc ttccttgaat
     2821 tccgtgagaa gactggtctt gctttccaat atcaatgaat tgcattatga gtatttaact
     2881 gccgcgttcc cttacgcctt tagtttgttt agcccggata agataattcc ttcttttcgc
     2941 gccggcttta tgaagcctga ccgccaaata tatgagctgg cccttagcgc cgcgggcgtt
     3001 tccagggatg aagtagtcta tgtggatgac cgtctggacc tgattgaggc ggcctccggt
     3061 tacggcatac cctcaatcca atttaaggat atacatcaat taagacagga attcctgaat
     3121 ttagggatta tccaggatgc cgatgtccct tgcccgaagt aataaatctc ttctatttgt
     3181 catttggatt ttgtcatttg tcattacttt gtccggatgc gcggttaccg ggccttatgt
     3241 ctccgaggaa gagattgagc aggcatcaga ggatctgaag gtcaaggcct taaaattcca
     3301 gatagattat ttagcccagg tcaataacat cggctataaa atcctgctta agctccctga
     3361 tgaggacaaa aagggtgact ttgtatactc cggactgctc ttaagcaaga acgataaata
     3421 cttcaaacgg ctctaccatt tgccttctga agccggggtg gtgattattg gggtggtaga
     3481 agacagcccg gccgcaaaaa gcgggattat ggctggggac atcctgaaga aggccgacgg
     3541 cctggctg
//
LOCUS       DATDUB010000088         2263 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_389856, whole genome shotgun sequence.
ACCESSION   DATDUB010000088 DATDUB010000000
VERSION     DATDUB010000088.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2263)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2263)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2263
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_389856"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..438
                     /gene="mraZ"
                     /locus_tag="VJA84_01720"
     CDS             <1..438
                     /gene="mraZ"
                     /locus_tag="VJA84_01720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010898727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0051302 - regulation of cell division
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="division/cell wall cluster transcriptional
                     repressor MraZ"
                     /protein_id="HLD40876.1"
                     /translation="YGEYQHSIDRKGRLILPSKFRETAKSHFIERFFVTRGLDKCLFV
                     FAEEEWKIQEAKLKGLSFTKQQARAFNRLYFSGASEVVPDRQGRIIVPQYLKDFAEIK
                     RDVVVLGVSNRIEIWAKPNWQSFYGNSTPVFEEIAQNLLEGEK"
     gene            506..1429
                     /gene="rsmH"
                     /locus_tag="VJA84_01725"
     CDS             506..1429
                     /gene="rsmH"
                     /locus_tag="VJA84_01725"
                     /EC_number="2.1.1.199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003868863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016434 - rRNA (cytosine)
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HLD40877.1"
                     /translation="MNIRHKPVMLKEVIEALNLRPGLTIVDATIGTGGHSLEIARRIF
                     PGGLPNRQAGRLIGIDRDEDSLLIAKETLKEFGEGVSLIHSDFRNIEGILNSLNLKKI
                     DGILLDLGISSYQLDAQERGFSFRYDAPLDMRMDKTSYISAYDLVNNLTEKEISDILW
                     RFGEERWHNRIARHLIRERERNPVATTGQLKEIVMKSIPYRFLARGRIHPATRTFQAL
                     RIAVNRELESLKEVLDKLPYFLNNQSRVCVISFHSLEDRIVKHNFRDMAKEGIYKIIS
                     KKPLGPSESEAEDNPRSRSAKMRAARKEGEE"
     gene            1426..1887
                     /locus_tag="VJA84_01730"
     CDS             1426..1887
                     /locus_tag="VJA84_01730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40878.1"
                     /translation="MKLKYFLLILCPATVLSLFFVRQETEVIKLAYKENQSSRLYKEL
                     LDSNRYLRYNLISLKSSPYLADRLLNEASGYELPKQSQVLSLILPQENNPAVLKEAKA
                     DWVFKLQESWPIVLVKSYVNKQALGLQDSNILLRKTNRTVGFASQEYSPSK"
     gene            1953..>2263
                     /locus_tag="VJA84_01735"
     CDS             1953..>2263
                     /locus_tag="VJA84_01735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40879.1"
                     /translation="MHTSLSHRRLLAVIFFFLFLFVSCAGRILYIKFFKSRYLSHIAD
                     QQHNLYVELESLRGTIYDRNMKPQAFNLPCDSLYASPRQINDKEKIVKALRDVLGLED
                     G"
BASE COUNT          604 a          504 c          570 g          585 t
ORIGIN      
        1 tacggcgaat accagcacag tatagacagg aaaggcaggc ttatcctgcc ctctaaattc
       61 cgggaaacgg ccaagagcca tttcattgaa aggttctttg ttacccgggg tttggataag
      121 tgcctttttg tgtttgccga ggaggaatgg aagatccagg aggctaagct taaaggcctg
      181 tcttttacca aacagcaggc ccgggccttt aaccggctgt atttctccgg ggcctcggaa
      241 gtggtccctg accgtcaggg caggataatc gttccccaat atttgaaaga ctttgccgag
      301 ataaaaaggg atgtggtggt cctgggggtg tctaaccgga ttgagatttg ggccaagccc
      361 aactggcaga gtttttacgg caattccacc ccggtctttg aggagattgc ccaaaatcta
      421 ctggagggag agaagtaaga aagtaggaga gtaagagagc aggggcagac ctgtgtgtct
      481 gcccataaaa aagcatatgg taatgatgaa tatcagacat aaaccggtta tgctcaagga
      541 agtgattgag gccttgaatc taaggccggg cttgactatc gtggatgcca ctatcggcac
      601 cggaggccat tccctggaaa tagccagaag gatatttccc ggcggcctgc ctaatcggca
      661 ggcaggcagg ctcatcggca ttgaccggga tgaggattct ttgttgattg ccaaagaaac
      721 cttaaaggaa ttcggggagg gcgtgagtct tatccattcg gatttccgca atatagaggg
      781 cattttgaat tctcttaatt tgaagaagat tgacggtata cttttggacc tggggatatc
      841 cagctatcaa ttagacgccc aggagcgggg ttttagtttc cgttatgacg cccccctgga
      901 tatgcgaatg gacaagacca gctatatctc ggcttacgac ttggtgaata atttaactga
      961 aaaagaaatc tcggatatcc tctggaggtt tggagaggag agatggcata accgcattgc
     1021 ccggcatttg atcagggaga gagagcgtaa tcccgtggcc actacaggcc agctcaagga
     1081 gatagtgatg aaatccatcc cctaccgctt cttggcgcgc ggacgcattc atccggccac
     1141 ccgcaccttt caggccttaa ggatagcggt gaaccgggaa ttagagtccc tgaaggaggt
     1201 tttagacaaa cttccttatt ttctgaataa tcagtccagg gtctgcgtta tttcctttca
     1261 ttccctggaa gacagaattg tcaaacataa tttccgcgat atggccaagg aaggcattta
     1321 taaaataatc agcaagaagc ctcttgggcc ttctgaaagc gaggcggaag ataatccccg
     1381 ctcaagaagc gccaagatgc gcgcggcccg gaaggaaggt gaggaatgaa gctgaaatat
     1441 tttctgctta tactttgccc ggcgacggta ttaagccttt tttttgtccg ccaggaaaca
     1501 gaggtgatta agctggctta taaggaaaat cagagcagcc gcctctataa ggaattgctt
     1561 gatagcaacc gttatttaag atataatctc attagtttaa aatcttctcc ttatctggcg
     1621 gatagactgc ttaacgaggc atccggatat gagcttccta agcagtcgca ggtattgagc
     1681 ctgattctgc ctcaagaaaa taatcctgcc gtccttaaag aggcaaaggc ggattgggtt
     1741 tttaaacttc aggaaagctg gcccatagtt ttagttaagt cctacgttaa taaacaggcc
     1801 ctaggccttc aggattctaa tattctgcta cgcaaaacta atagaaccgt tggttttgct
     1861 tcgcaggaat attctccgtc aaaataattt ctccgaagca aaagcgcagt tccaattgct
     1921 tttgcgaagg agaatagata aataatctaa gcgtgcacac cagcttaagc catcgtcgtc
     1981 tcctggcggt catctttttc tttttgttcc tctttgtttc ctgcgcgggc cgcatcctct
     2041 atatcaagtt tttcaaatcc aggtatctct cccatatcgc cgatcagcag cacaatcttt
     2101 atgttgagct tgagtctctg cgcgggacaa tctatgaccg taatatgaaa ccccaggctt
     2161 ttaacctgcc ttgcgattcc ctgtatgcct ctccccgcca gataaatgat aaggagaaaa
     2221 tagtcaaggc cttaagagat gtcctggggc tggaggacgg cta
//
LOCUS       DATDUB010000089         3590 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_2062090, whole genome shotgun sequence.
ACCESSION   DATDUB010000089 DATDUB010000000
VERSION     DATDUB010000089.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3590)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3590)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3590
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2062090"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            35..1564
                     /locus_tag="VJA84_01740"
     CDS             35..1564
                     /locus_tag="VJA84_01740"
                     /inference="COORDINATES: protein motif:HMM:NF012695.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate nucleotidyltransferase"
                     /protein_id="HLD40880.1"
                     /translation="MRVRRRRTKQSPCEDSLYAIILAGGVGSRFWPFSRELEPKQFLK
                     IIKDKSLLQDTVARLKGIVNPGNIYIITNKVYFFEIKRHIQGFKIPDENIILEPQGKN
                     TAPAIGLCSRIISQRNKNASLIVLPADHCIRDVESFRKCLRQALIRAQDDYLVTIGIR
                     PKKAATGYGYIKISHQLNPSLRARSAKQSPGGLLRRGVYTERSEGAPRNDSSKSFNVD
                     KFLEKPSLEKAKKYTASKDYFWNSGIFVWKAAVFERELRKYQPDLYSRLEKINSIEDI
                     EKVWPGIKPVSVDYGVMEHSKRIALIPAEFDWSDLGSWDALEEVVPKNKKGNILSRDS
                     IDVDSQGLCAFSRGNRLIATIGLKDLIIADTPDALLVCDRQRTQEVKNVVSELKRKNR
                     KEHILHLTDRRPWGSYTVLQIADGFKIKLIEIEPKKRLSLQAHRRRSEHWIVVSGSAK
                     VIRGRDIIYVHSNQSIYIPKATKHRLENPHNAPLKIVEVQTGSYLEEDDIQRFDDDYK
                     R"
     gene            1612..2751
                     /gene="waaF"
                     /locus_tag="VJA84_01745"
     CDS             1612..2751
                     /gene="waaF"
                     /locus_tag="VJA84_01745"
                     /inference="COORDINATES: protein motif:HMM:TIGR02195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008920 - lipopolysaccharide
                     heptosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase II"
                     /protein_id="HLD40881.1"
                     /translation="MNIIIVNPFGIGDCLFATPLIHSLKDAFPADKIGFLCNKRTAPL
                     LKNNPFIDQIFIYERDDFKRLQSVSWFKWFKEFNSFIRQIKKARFDLAIDLSLASNFG
                     FFLWLSGIKRRIGYNYKGRGWLLTDSLKLEGYENRHIVEYYSQLLKLIPYPSLRGVPK
                     LSIDDEAILKYRNLELYLDKDDQAFADKIFKVNNIDKARPVIAIAPGGGASWGKEAYL
                     KYWPAESYKALIHKILDKYKATVIILGDSSDKNLFSRHCEPLTQSVKGEAIFNLIDFR
                     GQATLGQSAALINKADLFIGNDGGLLHMAVGLNKKTVSFFGPVDPAVYGPYPLDEKQH
                     IVLRRNLGCSPCYQKFRLNSCLRNRECLEKIDVEEVLKAMETVLL"
     gene            2748..>3590
                     /locus_tag="VJA84_01750"
     CDS             2748..>3590
                     /locus_tag="VJA84_01750"
                     /EC_number="2.6.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013227.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS family aminotransferase"
                     /protein_id="HLD40882.1"
                     /translation="MIPILDLKKQIAPMRAEIDAAIKKVIDNANFVFGQEIREFEEEL
                     VRYSGAKYAVGVSNGTDAIKLSLVALGIKPGEGVLCPAFTYYASAGAIASMGAAPVFA
                     DIEPDSYTISLEGIEKALKKKNKLKVKAIVPVHLYGQCADIDGILKIAKKHKLKVVED
                     TAQAFGADYEGKKAGTFGDCGALSLFPGKNLGAFGDAGAILTNNQAVAERLKIFRNQG
                     NKEKYYHLVIGYNNRLDPLQAAILKVKLKYLDGWNKRRQENAEYFNQQLKGLPLKTPF
                     VPAYT"
BASE COUNT         1027 a          737 c          905 g          921 t
ORIGIN      
        1 atagatgaaa tcaaaaagat tatttgaatc gtcattgcga gtccgccgaa ggcggacgaa
       61 gcaatctccg tgtgaggatt ctctatacgc cataatcctg gccggagggg tgggcagccg
      121 tttttggcca ttcagccggg agcttgagcc caagcaattc ttaaagataa ttaaggataa
      181 gagtttattg caggataccg tagcccgtct taagggaata gttaatcccg gcaatattta
      241 tattatcact aataaggttt atttctttga aataaaaagg catatccagg gctttaagat
      301 tcctgacgag aatatcattt tagagccgca gggtaaaaat accgccccgg caatcggttt
      361 atgctccagg ataatcagtc aaaggaataa aaatgcctcg cttatagttc tgccggccga
      421 tcattgcatc agggatgttg agtctttccg gaaatgcctt aggcaggcat tgatccgcgc
      481 ccaggatgat tatctggtaa ctatcgggat ccggccgaag aaagcggcaa cgggatacgg
      541 atatattaag ataagtcatc agcttaatcc gtcattgcga gcacgaagtg cgaagcaatc
      601 tcctggggga ttgcttcgtc gcggagttta cactgagcga agcgaaggtg ctcctcgcaa
      661 tgactcttct aagagtttca atgtagataa attcttggaa aagccgagtt tggaaaaggc
      721 gaaaaaatat accgcaagca aagactattt ctggaacagc gggatatttg tctggaaggc
      781 cgcggttttt gagcgggaat taaggaaata ccagccggat ttgtattccc ggttagagaa
      841 gataaattca attgaagata ttgaaaaggt ctggccggga attaagccgg tgtccgtgga
      901 ttatggggtt atggaacatt ctaaacggat tgccttgatc cccgcggagt ttgactggtc
      961 ggatttaggc agttgggatg ccttggaaga ggtggtgccc aagaataaaa agggcaatat
     1021 cctctcccgg gattctatag atgtggacag ccaggggctt tgcgccttta gccgcggtaa
     1081 ccgcttgatt gccactatcg gtttaaagga tttgattatc gccgataccc cggatgccct
     1141 tctggtctgc gacaggcaaa ggacccaaga ggtaaaaaat gtggttagtg agttaaagag
     1201 gaaaaaccgc aaagagcata tcctgcacct gactgaccgg cgtccctggg ggtcttatac
     1261 ggttttacag attgccgatg gttttaagat aaaactgata gaaatagagc ccaaaaaacg
     1321 gcttagcctg caggcccacc gcaggcgctc cgaacactgg attgtggtat ccggctctgc
     1381 caaggtgatt cgcggaaggg atatcattta tgtccacagc aaccaaagca tttatatccc
     1441 taaagccact aaacaccgtt tggaaaatcc tcacaatgct cccttaaaaa tagtagaggt
     1501 ccaaaccggc tcttacttgg aagaagacga catccagcgc tttgacgacg attacaaacg
     1561 ataagctttt tttgtcattc cccggcttga ccggggaatc taggtgttaa gatgaacatt
     1621 attattgtca atcccttcgg catcggtgat tgtttatttg ccaccccttt gatccacagc
     1681 ctcaaagacg cgttccccgc agataaaata ggttttctct gcaacaagcg cactgcccca
     1741 ttgttaaaga ataatccctt tattgaccaa atctttattt atgaaaggga tgactttaaa
     1801 cgcctgcagt cggtctcctg gtttaaatgg tttaaggaat tcaattcttt tatccgtcag
     1861 ataaaaaagg ccaggtttga cctggcgata gatttatctt tggcctctaa tttcgggttt
     1921 ttcttatggc tgtctgggat aaagagaaga atcggctata actacaaggg caggggctgg
     1981 cttttaactg attccctgaa gcttgagggt tatgagaaca ggcatattgt ggaatactat
     2041 agccagcttt taaagttaat tccttatccg tcattgcgag gagtcccgaa gctatccata
     2101 gatgacgaag caatcttaaa atacagaaat ttggaattat atttagacaa agatgaccag
     2161 gctttcgcgg ataagatctt taaggttaac aatattgata aggccaggcc tgttatagcc
     2221 atagcccccg gaggcggggc cagctggggg aaagaggcct atctaaaata ctggccggca
     2281 gaaagttata aggccttaat ccataaaatc cttgataaat ataaggcaac ggttataata
     2341 ttgggagatt ccagcgataa aaatttgttc tctcgtcatt gcgagccctt gacacaaagt
     2401 gtcaagggcg aagcaatctt taatcttatt gattttagag gccaggccac cttaggccag
     2461 tccgccgcgc tgatcaataa agcggatctg ttcattggaa acgacggcgg gctcttacat
     2521 atggccgtgg gcctgaataa gaagaccgtc tccttttttg gcccggtaga ccccgcggtt
     2581 tacggcccct acccgctgga tgagaaacag catattgttt taagacggaa cttgggatgc
     2641 agtccctgtt atcaaaagtt tcgtcttaat tcttgtttaa ggaatagaga atgtttggag
     2701 aagattgatg ttgaagaagt tttaaaagca atggagacag tattactatg ataccaatat
     2761 tagacctgaa aaaacagatt gctccgatga gagcggagat tgacgcggcg attaaaaagg
     2821 tgattgataa cgctaatttt gtctttggcc aggaaatcag ggagtttgag gaagagctgg
     2881 taaggtattc aggcgccaaa tacgcggtgg gggtttctaa cggcaccgat gccataaaat
     2941 tatccttggt agccttgggg atcaagcccg gggagggcgt tctttgcccg gcctttacct
     3001 attatgcctc agccggggcc atagccagta tgggggcagc gccggtcttt gcggatatag
     3061 agccggatag ctatactatt tccttggaag gcatagaaaa ggctttaaag aaaaagaata
     3121 agcttaaggt caaagccatt gtcccggtgc acctttatgg tcaatgcgcg gatatagacg
     3181 gcatattaaa aatagccaag aaacataagc taaaagtagt ggaagacact gcccaggcct
     3241 ttggcgcgga ttacgaaggg aagaaggccg gcactttcgg cgattgcggg gccttgagcc
     3301 tgtttccggg gaagaattta ggggccttcg gcgatgccgg ggcgattttg actaataacc
     3361 aggctgttgc cgaacgcctg aagattttcc ggaatcaggg gaacaaggag aaatactatc
     3421 atttagttat cggctataat aatcgtttag accccctcca ggcggcaata ttgaaggtaa
     3481 agctaaaata tttagacggc tggaataaaa gaaggcagga aaacgccgaa tactttaacc
     3541 aacagctaaa aggcctgccg cttaagacgc cttttgtccc ggcatatacc
//
LOCUS       DATDUB010000090         2702 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_2227526, whole genome shotgun sequence.
ACCESSION   DATDUB010000090 DATDUB010000000
VERSION     DATDUB010000090.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2702)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2702)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2702
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2227526"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(80..997)
                     /gene="hemC"
                     /locus_tag="VJA84_01755"
     CDS             complement(80..997)
                     /gene="hemC"
                     /locus_tag="VJA84_01755"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: protein motif:HMM:TIGR00212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004418 - hydroxymethylbilane synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HLD40883.1"
                     /translation="MAGKRKIIVGARGSLLSRAQTDIVISALKKKSPGYKFIFKKIIT
                     AGDRNKTRQKEAVGIFVKKIEGALLSGQIDIAIHSAKDLPSELPAGLKLAAVPKRESP
                     ADVLIAREKISLREIKPRAVIGTSSPRRRAQLLNLRPDLSIKDLRGNLDTRIKKLETG
                     EFTAIISALAGIKRLKIKNLFYQILPNNIMLPCAGQGALAIEIRKKDKFIKGIVSKIN
                     HPPSFTRVSCERAFIQELRAGCRLPVGALARIKGKRISLEAKVLSPDGKKVIYLKKSA
                     SVSKAESLGRALAKEALKKGAGEILESKK"
     gene            complement(970..1998)
                     /gene="hemA"
                     /locus_tag="VJA84_01760"
     CDS             complement(970..1998)
                     /gene="hemA"
                     /locus_tag="VJA84_01760"
                     /EC_number="1.2.1.70"
                     /inference="COORDINATES: protein motif:HMM:TIGR01035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008883 - glutamyl-tRNA reductase activity
                     [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HLD40884.1"
                     /translation="MRLQVFGVNHKSAPIELRERISFPLKKLPQALKALKGRDSLREC
                     LILSTCNRMEIYSAAADSRQDPCIQKFLSDFHKIEASLLNKHFYIYQGAQAAEHLFRV
                     AASLDSMVVGETQILGQVKTAYSQARETGTVGHFLGRVFEEAIKTGKKVRNLTQIGKG
                     AVSTSSAAIELTKGVFKNLKDKKVLIIGAGKIAELAVENLHSKGVQTVIVANRTFEKA
                     KELAALFKGTAVRFDDILDYLADSDIVISSTSAPHFILKEKQVREAMRQRNHRPLLLI
                     DLGLPRNIPQETGNIKDVHLYNLDDLSEVCEANLKERLSEAKKAENLIRAQLETFLQK
                     WPAKERSL"
     gene            complement(1974..2543)
                     /locus_tag="VJA84_01765"
     CDS             complement(1974..2543)
                     /locus_tag="VJA84_01765"
                     /inference="COORDINATES: protein motif:HMM:TIGR01470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional precorrin-2
                     dehydrogenase/sirohydrochlorin ferrochelatase"
                     /protein_id="HLD40885.1"
                     /translation="MKYYPVLLNLKNKKCVVIGGGSVARRKAVSLLKAGSWVCVISPQ
                     LCPGLKRLKELKKLSWINSPYQKIHLKGAFLAIAATPEEAINIKISQDARKSGILINA
                     VDAEDLSDFIVPSSISKGGLILSVSTSGQAPCLSKRMRRDIERLLVPEYARFLKILEG
                     IRRELKAKCSDPKLRSRILNALCACKSSE"
BASE COUNT          572 a          672 c          673 g          785 t
ORIGIN      
        1 gagattgctt cgtcgggctt tgccctcctc gcaatgacat ggccgcaata agttctcgga
       61 tttttagcgg acacatatgt cactttttac tttctaatat ttcccccgcg ccctttttca
      121 gggcctcttt agccaaggcc cggcctaagg attcggcctt ggagacagag gccgattttt
      181 ttaggtaaat cacctttttt ccgtcggggc ttaagacctt tgcttccagg gaaatcctct
      241 tgccttttat ccgggccagg gcacctaccg gcaggcggca gccggcgcgc agttcctgaa
      301 taaaggccct ttcacaggaa acacgggtaa agctgggggg atggttgatt ttgctcacta
      361 tcccctttat gaatttatct ttcttccgga tttctatggc caaagcccct tgaccggcgc
      421 agggaagcat tatattattc ggcagtattt ggtaaaacag atttttaatt tttagccttt
      481 ttatcccggc cagggcgctg ataattgccg taaattctcc tgtctcaagt tttttaatcc
      541 gggtatctaa gttgcctctt aaatccttga tgctcaaatc cggacggagg tttagcaatt
      601 gggcccggcg gcgggggctg gaggtgccga ttacggctct tggtttaatt tcccttaggc
      661 ttattttttc ccgggcaatc aagacatctg ccgggctttc tcttttgggg accgcggcta
      721 atttcaggcc ggcgggcagt tccgacggca gatccttggc gctgtgtatc gcgatatcaa
      781 tctgcccgga taaaagggcc ccttctattt tcttgacgaa tatccccacg gcctcttttt
      841 gccgggtttt gtttctgtct cccgcggtaa tgattttttt aaaaataaat ttatagcccg
      901 gcgatttttt tttcagggcc gaaattacta tatccgtctg ggccctggat aagaggctgc
      961 ctcttgcccc tacaatgatc tttcttttgc cggccatttc tggaggaagg tttctaattg
     1021 cgcgcggatt aagttttccg ccttcttggc ttcagagagc ctttctttaa ggttggcttc
     1081 gcagacttca gagaggtcat ccaggttata gagatgcaca tccttgatat tccctgtttc
     1141 ctgggggatg ttacggggaa ggcccagatc aatcagaagt aagggacgat ggtttctctg
     1201 gcgcatagct tcccggacct gtttttcctt aaggataaag tggggggcgc tggtggagct
     1261 gatcacgata tcgctgtcag ccagataatc caggatatca tcaaacctta ccgcggtccc
     1321 cttaaacagc gcggctaatt ctttggcttt ttcaaaggtg cggttggcca cgataacggt
     1381 ctggacccct ttgctgtgca ggttttccac agccagttcc gcgatcttgc ccgcgccgat
     1441 aatcaggacc tttttatctt taaggttttt aaaaacgcct ttagttaatt caatggcggc
     1501 ggagctggtg gagaccgctc ctttgcctat ctgggtcagg ttgcgcacct ttttgccggt
     1561 ttttatggct tcttcaaaga cccggcccag gaaatgtccc acagttcccg tctccctggc
     1621 ctgggaatag gcggttttta cctgccctaa aatctgggtt tctcccacca ccatagaatc
     1681 taaagaagcg gccaccctga agagatgctc cgcggcctgg gcgccctggt aaatatagaa
     1741 gtgtttattt agaagggagg cctcaatttt atggaaatcg cttaagaatt tctggatgca
     1801 ggggtcttgc cgggagtcag ccgcggcgct gtaaatctcc atccggttgc aggtggaaag
     1861 tatcaggcac tcccggagcg aatcccgccc ttttaaggcc tttaaggcct gggggagctt
     1921 cttaagcggg aaggagatcc gctcccttaa ttcaatcggc gcgcttttat ggtttactcc
     1981 gaagacttgc aggcgcatag ggcgtttaat atcctgcttc ttaatttggg atccgaacat
     2041 tttgctttta attcccggcg gatgccttcc agtatcttca ggaacctggc gtattccggg
     2101 accagcaggc gctctatgtc ccggcgcatc cttttgctta agcagggggc ctggccgctg
     2161 gtggagacgc ttaggatcaa gccgccctta gaaatactgg aagggacaat aaaatcgctt
     2221 aaatcctcgg catccaccgc gttaattagt ataccagatt ttcgggcgtc ttgggatatt
     2281 tttatgttaa ttgcctcctc cggagtggcg gcaatggcca aaaaagcgcc tttgagatgt
     2341 attttctgat agggggagtt tatccaggac agctttttta gttctttaag cctttttagc
     2401 cccggacaaa gctgcgggct tatcacgcaa acccaagacc ccgccttgag cagagaaacc
     2461 gccttgcgcc gggccacgga gccgccgccg atgaccacgc acttcttgtt ttttaggttt
     2521 aagagaacag gataatattt cataaaacaa aacgctaact cccgcgaata atcagcggaa
     2581 attagcgttt taaccgtaat ttgcgcggaa gacacaatgc gggttagcgt ggttcagcgt
     2641 gaagttccga gcagttccgc gattttacta tttcagttta aactttcaca ctaactcttt
     2701 ta
//
LOCUS       DATDUB010000091         3736 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_2064149, whole genome shotgun sequence.
ACCESSION   DATDUB010000091 DATDUB010000000
VERSION     DATDUB010000091.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3736)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3736)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3736
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2064149"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(96..992)
                     /locus_tag="VJA84_01770"
     CDS             complement(96..992)
                     /locus_tag="VJA84_01770"
                     /inference="COORDINATES: protein motif:HMM:NF012795.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
                     /protein_id="HLD40886.1"
                     /translation="MSSGRISELGLIQRIGRRVKNAPSVIIGIGDDAAVLEYGRDKYQ
                     LFTSDMLVEGVDFTRRTPAKDIGYKALACSLSDIAAMGGIPRYALVSLGIPKEKPEAF
                     IDGFYSGLLKLARRFRVNIVGGDLSRSDRIVADVSLIGEVNKKRLVLRSGAKVNDILF
                     VSGELGGSIYGRHLRFIPRLKESAYLVNNYKVQAMLDISDGLSLDLSRLCRASRVGAV
                     VYEELIPVSKEAKGMLEALNMGEDFELLFSLPLKEARRLIKSGNKIFKAIGEIRPGRE
                     GVKIISRDSKARELTARGYQHF"
     gene            complement(979..2016)
                     /gene="mtnA"
                     /locus_tag="VJA84_01775"
     CDS             complement(979..2016)
                     /gene="mtnA"
                     /locus_tag="VJA84_01775"
                     /EC_number="5.3.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007220775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046523 -
                     S-methyl-5-thioribose-1-phosphate isomerase activity
                     [Evidence IEA];
                     GO_process: GO:0019509 - L-methionine salvage from
                     methylthioadenosine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S-methyl-5-thioribose-1-phosphate isomerase"
                     /protein_id="HLD40887.1"
                     /translation="MPITTIEWKNNCIRIIDQTKLPLKLEYLDCREVQSIWKAIKELK
                     VRGAPAIGIAGALGVILGIKDFPGRDIEDFKIKLDRTIKYLASSRPTAVNLFWALERM
                     KRRAHSNFNLSLPKIKGLLLEEALKILDEDKTICRKMADYGARLIRDGDTCLTVCNAG
                     ALATADYGTALGVFYRAQEKGRAFKVFACETRPLLQGARLTSWELKEHNIDVTLIADN
                     TAGYLMKEGKIDKVFAGADRVAANGDTANKIGTFNLAILSHYHKIPFYIAAPSSSFDL
                     KLKSGKNIPIEHRKPEEVSCLQSKKIAHSQVKVYNPAFDVTSHKFIRAFITEKGLIKP
                     PFAKNISNVIR"
     gene            complement(2038..3207)
                     /locus_tag="VJA84_01780"
     CDS             complement(2038..3207)
                     /locus_tag="VJA84_01780"
                     /inference="COORDINATES: protein motif:HMM:NF015948.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF362 domain-containing protein"
                     /protein_id="HLD40888.1"
                     /translation="MLFVKMSKLQVSIVKCKSYQPEELTEKIRESLRLIGGIEKFIRH
                     GAKVLVKPNLLMAASPDTAITTHPEFIRQVLRILKEINCRIYLGDGPSVFGSQMENIV
                     KVYEETGIREIAEEEAVELVTFDKRYIPPTSEGAQGYFPLAQYVKDCDYIVSIPKFKT
                     HEYMILTGAVKNLFGLIPGTFKLECHKNFHQPERFAKMLLDVCAAVKPALSIVDGITG
                     MEGNGPATSGSKRDIGLILAGSDPVAMDTVLAGIMNARPENIYTIKEALNRNLPGASL
                     DNIDILGMSLERVVIRGFKLPDISIQRAILNNLPPFAANLLKKWLTFQPKIDTDICQL
                     CNACVNNCPQKTMSNKDGKIVIDYSQCISCFCCREVCPYAAIGIKKSFLARLLGK"
     gene            complement(3399..3539)
                     /locus_tag="VJA84_01785"
                     /pseudo
     CDS             complement(3399..3539)
                     /locus_tag="VJA84_01785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002913088.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006306 - DNA methylation [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA methyltransferase"
BASE COUNT          958 a          987 c          780 g         1011 t
ORIGIN      
        1 cataatgtaa ttatccagaa aagcgccgag gatgtttgag cacggaatac ctgccgcagt
       61 ccgtcaggga aatgccccgc gcattctata caccactaaa aatgctgata ccctcttgcg
      121 gtaagctcac gggctttaga atcccggctt ataattttta ccccttcccg gcccggacgg
      181 atttccccga ttgccttaaa tattttattc ccgcttttaa tcagccttct ggcctccttt
      241 aaaggcaggc taaagagcag ttcaaaatcc tcccccatat tcaaggcctc aagcataccc
      301 ttggcctcct ttgagaccgg gattaactcc tcataaacaa ccgcacccac ccggctggcc
      361 cggcaaagcc gggataaatc caggcttaag ccgtcggaga tatccagcat agcctggacc
      421 ttatagttat tcactaaata agcggactct ttcagccggg gaataaacct taagtgcctg
      481 ccgtaaatag agccgcccaa ctccccgctg acaaagagaa tgtcattgac ctttgccccg
      541 ctcctcaaaa ccagcctttt cttgttcacc tcgccgataa gcgagacatc cgccacaatc
      601 ctgtccgagc ggctaaggtc gcctccaacg atattgaccc ggaatctccg ggctaattta
      661 agcaaaccgg aataaaaacc gtcaataaag gcctctggtt tttctttagg gatccctaaa
      721 gaaactaagg cataacgagg tatccccccc attgccgcga tatcgcttaa ggagcaggcc
      781 aaggccttgt aaccgatgtc cttggccggg gtgcgacggg taaaatccac cccttctacc
      841 agcatatccg aggtaaaaag ctgatattta tccctcccgt attccaagac cgcggcatca
      901 tcgcctatac caatgattac cgagggggcg ttcttgaccc tgcggcctat cctttgaatc
      961 aagcctaatt ctgaaatcct accggatgac attggagatg ttcttggcaa aagggggctt
     1021 aatcagccct ttttccgtga taaaggcgcg aataaactta tgtgaagtaa catcaaaggc
     1081 gggattatac accttgacct gggaatgggc aatcttctta gactgcagac agctgacctc
     1141 ttcaggcttt ctatgctcaa taggtatgtt ttttccggat ttcaatttca aatcaaagct
     1201 ggaagaagga gccgcgatat aaaaaggtat cttgtgataa tgacttaaaa tggccaggtt
     1261 aaaggtcccg attttattgg ctgtatcgcc attcgcggct acgcggtcgg ccccggcaaa
     1321 gaccttatca atcttgcctt ccttcatcag gtatccggcg gtattgtccg cgatcaaggt
     1381 tacatcaata ttatgctctt ttaattccca gctggtcagc ctggccccct gcaaaagcgg
     1441 ccgggtctcg caggcaaaga ccttaaaggc cctgcctttt tcttgggccc ggtaaaagac
     1501 ccctaaagcc gtcccgtagt ccgcggtggc cagggccccg gcattacaga ccgttaagca
     1561 ggtatccccg tcccggatca gcctggcgcc gtaatccgcc atcttgcggc agatagtttt
     1621 atcctcatcc aggattttta aggcctcttc caaaagcaat ccttttatct tgggaagaga
     1681 taaattaaaa ttggaatgcg cccgcctttt catcctttcc agggcccaaa agagattcac
     1741 tgccgtaggc cggctggagg ccagatactt gatggtccgg tctaatttta tcttaaaatc
     1801 ctctatatcc cggccaggaa aatcttttat ccccaggatg acccccaatg ccccggcaat
     1861 cccgatggcc ggggcccccc gcaccttcaa ttccttgatt gccttccata ttgattggac
     1921 ctcccggcaa tccagatact ctaatttcaa ggggagcttg gtctggtcaa ttatccggat
     1981 acagttattc ttccattcaa tagtggtaat aggcatatta ttgctccgtc aacttaatta
     2041 tttccccaat aatctggcta aaaagctctt ttttatcccg atggccgcgt aaggacagac
     2101 ctcgcggcag caaaaacagg aaatacactg cgaataatca atcacaattt ttccgtcttt
     2161 gttgctcatt gtcttttgcg ggcagttatt cacgcaggca ttgcataatt ggcagatatc
     2221 cgtgtcaatc ttaggctgaa aggtaagcca tttcttaagt aaattggcgg caaagggggg
     2281 aaggttattt aaaatagccc gttgaataga gatatccggg agtttaaaac cgcggataac
     2341 caccctttca agactcatcc ccaggatatc aatattatcc agagaagccc cgggaaggtt
     2401 tctgttcaag gcttctttga tggtatagat attttccggc ctggcattca taatcccggc
     2461 caacaccgta tccatggcca ccgggtcact gccggccaag atcaggccga tatccctttt
     2521 gcttccggat gttgccgggc cattaccttc catcccggtt atgccgtcaa ctatgcttaa
     2581 tgccggctta accgccgcgc agacatccag aagcattttg gcaaaacgct ccggctgatg
     2641 gaaattcttg tggcactcca gcttaaatgt cccggggata agtccaaaaa ggttctttac
     2701 cgccccggtt agaatcatat actcgtgggt cttgaattta gggatgctca cgatataatc
     2761 acaatcctta acatactggg ccaaaggaaa atatccttga gcgccttccg acgttggagg
     2821 aatatatctc ttatcaaagg tcaccagctc taccgcctct tcttcggcta tttcccggat
     2881 tccggtctct tcgtatacct tgacgatatt ttccatctgg gagccgaata cgctggggcc
     2941 gtcaccgaga taaatcctgc agttaatctc tttaaggatt cgtaaaacct ggcggatgaa
     3001 ttccggatgg gtagtaatgg ccgtatcagg tgaggcggcc attagaagat tgggtttgac
     3061 cagcactttg gccccgtgcc ggataaactt ctctatcccc ccgataagcc gcagagactc
     3121 ccggatcttc tccgtaagct cctctggctg ataactctta cacttgacta tggatacctg
     3181 gagtttagac attttaacaa atagcaaccg caatcctcat tctaagcgaa acagcctaat
     3241 ggcgtttgca aaatcggggg acaaaatcgg caaaatcgag caaaatcggg ggacacaata
     3301 cctatttctc tttcttctgc gccccacact cttcaagata attagtattg tgttccccga
     3361 tcccgcgatt tccgatttct tgtttattgt tcttgttttt agaatagcaa cttttgtaaa
     3421 ttttccaatc gccttcttgc tatttctaca tattcaggat tactatctat gccaatataa
     3481 ttcaggccca agcttttcgc cgcgaccacg gtagttccac ttcccacaaa tggatctaag
     3541 ctcccataga caaataaact aaaactagag catttttagt aaacttttgg ttcttgccaa
     3601 atagttctgg taatttaacc ccagatcttt ctagaaattt cttatggaaa gctgcaatta
     3661 cattatattg ttcaactatt agttccgttc agacatgtct aaattatgac attgtctctg
     3721 acggaaacac tatttc
//
LOCUS       DATDUB010000092         2202 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_2394324, whole genome shotgun sequence.
ACCESSION   DATDUB010000092 DATDUB010000000
VERSION     DATDUB010000092.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2202)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2202)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2202
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2394324"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            77..1189
                     /gene="tgt"
                     /locus_tag="VJA84_01790"
                     /pseudo
     CDS             77..1189
                     /gene="tgt"
                     /locus_tag="VJA84_01790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014067671.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008479 - tRNA-guanosine(34) queuine
                     transglycosylase activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
     gene            1179..2081
                     /gene="trmD"
                     /locus_tag="VJA84_01795"
     CDS             1179..2081
                     /gene="trmD"
                     /locus_tag="VJA84_01795"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011699838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052906 - tRNA
                     (guanine(37)-N1)-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HLD40889.1"
                     /translation="MLIDIITIFPEVFKPYINESILKIAQEKGKLEIRLHNLRDYTLD
                     KHRKVDDRPFGGGPGMVMTAEPIFRAVETINQNSKSPCLPAGRKSQNDKSKPKIILLS
                     PQGKTLNQKLARRLSKLKHLILICGRYEGVDERVRGRLADEEISIGDYVLTGGELPAM
                     VLMDALTRLIPGVLGHADSIRDESFSENLRHSKVSNAILCRKGGVGETVPHDLGVLSE
                     ADDKSAKRRRGACPHSGIKSEKPILLPEYPQYSRPADFKGMKVPEVLLSGNHKKIEEW
                     RKKQALETTKKKRPDLFREKIKGQ"
BASE COUNT          621 a          472 c          579 g          530 t
ORIGIN      
        1 gcaaaaattt ccgtacgccc tacgaaaaca caaccttgtc accctcgcca gcaagctgaa
       61 gcgcttatag ataataatgt cttttaccct tattcatcaa gatagttcca ccaaggcgcg
      121 gctggggagg ctggagaccg cacatggcat tattgaaact cctgtcttta tgccggtggg
      181 cactcaagga tcggtaaaga ccttgtcgcc caaggagcta aaagaggcgg acagccagat
      241 aatcttaggc aatgcctatc atctttatct gcgcccgggg ttagagataa tcaagaatgc
      301 cgggggcctg cataagttta tctcctggga taagcctatc ctgacagata gcggaggcta
      361 ccagatattc agcctggccg gttttcgcaa gatcaaggat gagggggtgg agttccagta
      421 gcatctggac ggctcgcggc atttcctcac tcccgaaaag gtgatggaaa tagagaatgt
      481 attaggctcg gatattatga tgcctctgga tgagtgcgcg ccttatccct gtgatcgcaa
      541 acacgcccag acagctatgc aaaggacgac ttactgggcc aggaggtcta agtcagcagt
      601 cagcgcccag cctttagctt tcagcagaca attattattt gggatcatcc agggggcgac
      661 ttatgaggaa ctgcgcaggc agtccgcaga ggagattgtg gaaaccggct ttgacggtta
      721 tgccttgggc ggattatctg ttggcgaacc caaggattcg cgctataata taatctcttt
      781 tacggtaggc tttatgcctg aagactcccc gcgttatctg atgggcttgg gcactcctga
      841 agacatcctg gaggcggtaa aactggggat ggatatgttt gactgcgtta tccccacccg
      901 ttacggcagg aacggcaccg ccttcacttc tgaaggtaaa atagtgattc gtaacggcct
      961 ttatgcccgg gatttgggcc ctttagaccg gtcttgcgat tgctatgcct gtaaaaactt
     1021 cagccgctct tacctaaggc atctttttaa tgtggaggag atactgggcc tgcatttggt
     1081 gtctttccac aatatttatt tttataaccg gttattaaaa agtatccgtc aggcaattaa
     1141 ggagaacaaa ctgaaggact ttagctttag tcaagtatat gctcattgat ataatcacaa
     1201 tcttcccgga ggtgtttaaa ccctatataa acgaatccat attgaagatt gcccaggaaa
     1261 aaggaaagct ggagattagg ctgcacaacc ttagggatta taccctggat aagcaccgca
     1321 aggttgatga ccggcccttt ggcggcgggc cggggatggt gatgaccgcg gagccgatat
     1381 tccgggcggt agaaacgata aatcaaaatt caaaaagtcc ctgcctgccg gcaggcagga
     1441 aaagtcaaaa tgacaaatca aaaccgaaaa ttattttatt atcgcctcaa ggtaaaacct
     1501 taaatcagaa attggcgcga agattgtcaa aattaaagca tctgatcctt atctgcggca
     1561 ggtatgaggg ggtggatgaa cgggtgcgcg ggcgcttagc ggatgaggag atatctatcg
     1621 gagattatgt cttgacagga ggcgaacttc cggctatggt attaatggat gcccttaccc
     1681 ggcttatccc gggtgtttta ggacatgctg actctatccg ggatgagtcc tttagcgaaa
     1741 acctgcggca tagtaaagta tctaacgcta ttctatgccg caaagggggc gtgggggaga
     1801 ccgtccccca cgatttgggg gtgctcagcg aagccgacga taagtcggcg aagcgccgaa
     1861 ggggggcttg cccccatagc ggaataaaat cggagaagcc gattttattg ccggagtatc
     1921 cacaatacag ccgtccggcg gattttaaag ggatgaaagt ccctgaagtt ttgttgtccg
     1981 ggaatcataa aaagattgaa gagtggagaa aaaaacaggc cttagagaca actaagaaaa
     2041 aaaggccgga tttattcagg gaaaaaataa agggtcaata gtcaatagaa aaggaaaacc
     2101 atagactatc gactatagac tgtcgaccct tgattattaa ctctaacaaa gagattatgg
     2161 gggttaaaaa tggacaagat caaattgatt gaaggcgatt at
//
LOCUS       DATDUB010000093         6790 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1405135, whole genome shotgun sequence.
ACCESSION   DATDUB010000093 DATDUB010000000
VERSION     DATDUB010000093.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 6790)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6790)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6790
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1405135"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1709)
                     /gene="fusA"
                     /locus_tag="VJA84_01800"
     CDS             complement(<1..1709)
                     /gene="fusA"
                     /locus_tag="VJA84_01800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013119205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HLD40890.1"
                     /translation="MKREFSLDKIRNIGIVAHIDAGKTTTTERILFYTGRTHKIGEVH
                     DGAATMDWMVQEQERGITITAACTTCFWQDCRINIIDTPGHVDFTIEVERSLKVLDGA
                     VVLFDAVNGVEPQSETVWRQADRYGVPRICYANKMDRPAANLEETIKQIHNRLGANAA
                     AVQVPYGLEDNFKGVIDIIEDKLYLYDETSGKNYKLLDVPEESKLEVKAAKDKLIEHL
                     AEADDEVMQYFVEAKPCPKDIIKKAIRRQVIRNAFVPVFCGSSFKNKGIQPILDAVCA
                     YLPSPADKEKIKGTDPNTDQYEERQVSDESSFCGLCFKVASDPYVGRLNFIRVYSGVV
                     KSGTYIYNAVKREKERVTKIVLMHANKQEIIDSAATGDICALVGLKDTKTGDTICDED
                     DQIILEAMHFPEPVISQAIEPKTKSDQEKMGMGLKKLSDEDPSFRVKYNNETGQTIIS
                     GMGQLHLDIIVDRLLREFSVASTVGQPQVAYKETLTKKIISTGKFIQQSGGRGQYGHC
                     VLEMRPQEGPGLGVTFEDKLKGGSIPREFVPAIRNGVNSAAKSGILAGYPVTDVAVTL
                     IDGS"
     gene            complement(1851..2321)
                     /gene="rpsG"
                     /locus_tag="VJA84_01805"
     CDS             complement(1851..2321)
                     /gene="rpsG"
                     /locus_tag="VJA84_01805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011943782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HLD40891.1"
                     /translation="MRRRKAQEREIPIDPKYNSKVAAKFINIVMEKGKKQLAENIVYG
                     AFEIMKQKLNDQDGLKLFHKAIDNVRPRLEVKPRRVGGATYQIPVEVRQDRGVSISLR
                     WIRDFARGKKGKPMVERLADELIAAYKSEGSAIKKRDDMHKMAEANKAYAHFRW"
     gene            complement(2359..2760)
                     /gene="rpsL"
                     /locus_tag="VJA84_01810"
     CDS             complement(2359..2760)
                     /gene="rpsL"
                     /locus_tag="VJA84_01810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004291249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HLD40892.1"
                     /translation="MPTIQQLIRLGRIRKAKKSKSPALKNCPQRRGVCLQVKTMTPKK
                     PNSALRKIARTRLTTGIEVTSYIPGEGHNLQEHSIVLVRGGRVKDLPGVRYHIVRGTL
                     DTAGVANRKKSRSKYGAKRPKEGAAPAAKAK"
     gene            complement(2784..>6790)
                     /gene="rpoC"
                     /locus_tag="VJA84_01815"
     CDS             complement(2784..>6790)
                     /gene="rpoC"
                     /locus_tag="VJA84_01815"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004514636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000345 - cytosolic DNA-directed RNA
                     polymerase complex [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HLD40893.1"
                     /translation="PQVIRSWSKGEVKKAETINYRTLKPEKGGLFCEKIFGPVKDWEC
                     NCGKYKGIKFSGITCDRCGVTVERSSVRRERMGHIELAAPVTHIWFFKAVPSRLSALL
                     DLGLRELEKVIYYEEYVVVDPQDTPLKKMELLSEEKYQACLEKYGSNFKAQIGAEAIR
                     DLLKEIDLNDLCARIRKGLEKGKDTPSNRKNLKILKLVEDIKNSGNKPEWMILEVLPV
                     IPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRKLIELNAPEIIIRNEKRMLQEA
                     VDALLDNGRHGRAVMGANNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPE
                     LKMHQCGLPKQMALELFEPFIIKKLREKGFVHSIKGAKRMVERAKIEVWDILDEVIRD
                     HPVMLNRAPTLHRLSIQAFQPVLIEGKAIRIHPLVCTAFNADFDGDQMAVHVPLSIEA
                     QVETRMLMMSTNNVFSPADGRPIVTPTQDIVLGCSFLSKQRPGAKGEGRIFSCADEVS
                     CAYNDGSVALNAGIKLRVGLIFDLSQGQPIEERGIIETTVGRAIFNDVLPQGYGYVNM
                     ELNKSNLGQIVANCYKRFGHGETINLLDRLKSLGFEYATLGGMSISIDDLKIPKAKGD
                     VLKEVMQEVAKVEGQYRRGIITDGERYNKVIDIWTHATDKISELLFKEMEPFNPIFMM
                     ADSGARGSRMQIRQLAGMRGLMAKPSGEIIENPITANFREGLTVLEYFISTHGARKGL
                     ADTALKTADAGYLTRRLVDVAQEVIITEEDCGTLNGITISSIIEGDEVVVSLKDRIAG
                     RVALDNVVDIITDQIMVEAGSEITEDKADMIERLGVEKIRIRSVLTCESERGVCAKCY
                     GRNLATGKVVEIGEAAGVIAAQSIGEPGTQLTMRTFHIGGTASRVVEQSSLKSKNKGV
                     VKYHNLRVVEKDKEFIVLNRNGAISINNEQGRELERYTVPQGSFIAIAEGKEAAKGIV
                     FVRWDPYTSPILTEVKGKVKFEDLKENVSMREEMNPVTGVTERVVVEHKADYHPQIII
                     LDSKDEVSGIYPLPIGAHIVVKDGQTAGAGELVAKIPRVSGKTRDITGGLPRVAELFE
                     ARRPKDPAVISEIDGFVEFSEGKKNQRVIVVRSSTGMKREYGIPHGKHPNVYKGDRVS
                     SGQQLTDGPVVLQDILRVCGDKVLQEYLVNEIQEVYRLQGVRINDKHIEVIIRQMLKK
                     VRIEDAGDTEFLSGQHVDKIKFQKENARVAKKDGQPASATPILLGITKASLSTDSFIS
                     AASFQETTRVLTDSAASGRKDDLLGLKENVIVGHLIPAGTGLKLHRNFEMIKEASAII
                     KQEEKKMQLEEAKA"
BASE COUNT         1512 a         1949 c         1503 g         1826 t
ORIGIN      
        1 gaaccgtcta tcagggttac cgccacatcc gtaaccggat aaccggccag gataccgctc
       61 ttagccgcgg agttcacccc gtttcggatt gccggcacaa attcccgggg gatgcttccg
      121 ccttttagct tatcctcaaa ggtaaccccc aatccagggc cctcttgagg ccgcatctcc
      181 aaaacgcaat gtccgtattg accgcggccg ccggactgct ggataaattt accggtagag
      241 ataatcttct tggtcagggt ttctttataa gctacctgcg gctgccctac cgtagaagcc
      301 acgctgaact ccctcaaaag ccggtctacg ataatatcca aatgcagctg gcccatcccg
      361 gaaataatgg tctgtccggt ctcattatta tattttaccc tgaacgacgg gtcctcatcg
      421 gatagttttt tcagtcccat gcccatcttt tcctggtcgc tcttggtctt gggctcaata
      481 gcctgggaga taaccggctc gggaaaatgc attgcctcta aaatgatctg gtcatcctca
      541 tcgcaaatgg tgtccccggt tttagtgtcc ttaagcccga ccagcgcgca gatgtccccg
      601 gtagccgcgg agtcaattat ctcctgcttg ttggcgtgca taaggactat cttggttacc
      661 ctttcttttt ccctttttac ggcgttataa atataggtcc cggacttcac caccccggaa
      721 taaacccgga taaaattaag cctgcccaca taagggtctg aagccacctt aaaacaaagc
      781 ccgcaaaaag aggactcatc gcttacctgg cgctcctcgt attgatcggt gttagggtca
      841 gttcctttta tcttttcctt gtccgccgga gacggcagat aggcgcagac cgcgtctaag
      901 ataggctgaa tgcctttatt cttaaaagac gaaccgcaga aaaccgggac aaaggcatta
      961 cggatgacct gcctgcggat ggccttcttg ataatatcct tagggcaggg cttggcctcc
     1021 acaaaatact gcatcacctc atcatccgcc tcggccagat gctcaatcaa tttatcttta
     1081 gccgctttga cctcaagctt agattcctcc gggacatcca gcaatttata gttcttgccg
     1141 gaggtctcat catacaggta aagcttatct tcaattatgt ctattactcc cttaaaatta
     1201 tcttccagcc cgtaaggcac ctggaccgcg gcggcatttg cccccaggcg attatgtatc
     1261 tgcttgatgg tttcttccag attggccgcg ggccggtcca tcttattggc atagcatatc
     1321 ctgggcacgc cgtagcggtc ggcctggcgc cagactgtct ccgactgggg ctccaccccg
     1381 tttaccgcgt caaacaacac taccgccccg tctaaaacct tgagcgacct ttccacctca
     1441 atggtaaaat ccacatggcc cggggtatca ataatattta tccggcagtc ctgccagaaa
     1501 caagtagtgc aggcggcagt aatggtaatc ccgcgctcct gctcctggac catccagtcc
     1561 atagtcgcgg ctccgtcgtg gacctcgccg atcttgtggg tccttccggt atagaatagt
     1621 atgcgttcgg tggtagtggt cttgcccgcg tctatatggg cgactatccc gatatttctt
     1681 attttatcta aactaaattc tcttttcatc ttagatcctg aattctaaac actaaatact
     1741 aaataaatct aaaacttaaa accataaact caaaacaact gtttttgatt ttggatttta
     1801 aaatttgagt ttgtttagaa tttagtattt cgtatttagt gtttggcatt ttaccagcga
     1861 aaatgggcgt aggccttgtt ggcctcggcc atcttgtgca tatcgtcgcg tttcttaatt
     1921 gccgagcctt ctgatttata agcggcaatc aactcgtcag ccagcctttc caccatcggc
     1981 ttgccttttt ttccgcgggc aaaatcccgt atccagcgca gggaaatgga aaccccccta
     2041 tcctggcgca cctccaccgg gatctgataa gtggcccctc ccaccctgcg gggcttaacc
     2101 tctaaacggg gccggacatt atctattgcc ttatgaaaaa gcttcaggcc gtcctgatcg
     2161 ttaagtttct gcttcattat ctcaaaagcg ccataaacga tattttcggc cagctgtttt
     2221 ttgcctttct ccatcacaat attgatgaac ttggccgcca ccttgctgtt atacttcggg
     2281 tctatcggta tttctctttc ctgggctttt cttcttctca ttttttctcg ttattcgcgc
     2341 atcgtgattc gtgaatcact atttagcctt tgccgccgga gccgcgcctt ccttaggccg
     2401 tttggctccg tatttagagc gggacttctt ccggttggcc accccggcgg tgtccaaagt
     2461 ccctcggaca atatgatatc ttaccccggg taaatcctta accctgccgc cccggactaa
     2521 aacaatagaa tgctcctgaa gattatggcc ctcgccgggg atataggaag taacctctat
     2581 accagtggta agcctggtcc tggcaatctt acgcaaggcg gagttgggtt tcttgggagt
     2641 catggtcttt acctgcaggc acacccctct tctctgggga cagtttttta acgccggaga
     2701 cttggacttt ttggctttac ggatcctgcc taatctgatt agctgttgta tggtcggcat
     2761 tttcttttcc ctttactcct ttttcaagct ttagcctctt ctaactgcat tttcttttcc
     2821 tcttgcttaa taatcgcgga ggcttcctta atcatctcaa aattccggtg cagctttaag
     2881 cctgtgcctg ccgggataag atggccgaca atcacattct cctttaatcc caggaggtca
     2941 tcctttctgc cggaagccgc ggagtcggta agcacgcggg tggtttcctg gaagctggcc
     3001 gcggaaataa agctgtcggt gcttaaagag gccttggtaa tgcccagcag tatcggggtg
     3061 gctgaagcgg gctggccatc cttcttggcc acccgggcat tctctttctg gaatttgatc
     3121 ttatccacat gctggccgga gaggaattcc gtatccccgg catcctctat gcgcactttc
     3181 ttaagcatct gccggataat tacctcaata tgcttgtcgt taatgcgcac cccctgcagg
     3241 cggtagacct cttgtatctc attaactaag tattcctgca agaccttgtc tccgcagacc
     3301 ctaaggatat cctgcaggac caccggtcca tcggtcaact gctggccgga tgaaacccgg
     3361 tcgcccttat aaacattagg atgtttgccg tgaggtattc catactcccg cttcatcccg
     3421 gttgagctcc tgaccacaat cacccgctgg ttctttttgc cctcgctgaa ttccacaaaa
     3481 ccgtcaattt cactgatcac cgccgggtcc ttaggcctgc gggcctcaaa taattccgcc
     3541 accctgggaa gacctccggt aatatcgcgg gtctttccgg atactctggg aatcttggct
     3601 accaactctc cggcgccggc ggtctggccg tccttaacca caatatgcgc gcctataggc
     3661 aaagggtaaa ttccggaaac ctcatccttg gaatcaagaa taataatctg gggatgatag
     3721 tccgccttat gttccacaac cacgcgttca gtgaccccgg ttaccggatt catctcctcg
     3781 cgcatactca cattctcttt taagtcttca aacttcacct tgccttttac ttcagtaagt
     3841 atcggagagg tgtaaggatc ccagcgcaca aatactattc ccttggcggc ttctttgcct
     3901 tcggctatcg cgataaaaga gccctggggc acggtatagc gttccagctc ccttccctgc
     3961 tcgttattaa tgctgattgc cccgttacgg tttaagacga taaattcctt gtccttctca
     4021 accaccctta aattatgata tttgacaacc cccttattct tagactttag cgaagactgc
     4081 tccaccacgc gcgaggccgt ccctccaatg tgaaaggtcc gcatagtcag ctgggtcccc
     4141 ggctcgccga tgctctgggc ggcaataacc cccgccgcct cgcctatctc taccacctta
     4201 ccggtagcta aattcctgcc gtaacacttg gcgcagaccc ctctttccga ctcgcaggtt
     4261 aaaacactgc ggatacggat cttctccacc cccagccgtt cgatcatatc cgccttgtct
     4321 tcggttatct ccgagccggc ctcaaccata atctgatcgg taataatatc caccacatta
     4381 tccagggcaa ccctgccggc aatcctgtcc ttgagagaaa ccaccacctc atcgccttca
     4441 ataatggaag aaatggtaat cccgtttaag gtgccgcagt cttcctcggt aataatgacc
     4501 tcctgggcca catccaccag cctgcgggtc agatatccgg catcagcggt ctttaaggcg
     4561 gtatcggcca ggccttttct ggccccgtgg gtagagataa aatactccag caccgtcagg
     4621 ccctcgcgga aattagcggt aatcggattt tcaatgattt ctcccgacgg tttggccatc
     4681 agcccgcgca taccggccag ctggcggatc tgcatccggg aacccctggc cccggagtcc
     4741 gccatcataa atatgggatt aaaaggctcc atctctttaa aaagcagttc ggaaatcttg
     4801 tcggtggcat gggtccagat gtcaatgact ttattgtatc tttctccgtc ggtaataatc
     4861 ccccggcgat actgcccctc aaccttagcc acttcctgca ttacctcttt taagacatcg
     4921 ccttttgcct tagggatctt gaggtcgtct atggaaatag acatccctcc taaagtggcg
     4981 tattcaaaac ctaaagactt aagccggtcc agaagattga tcgtctctcc atggccgaag
     5041 cgcttataac agttagccac aatctggccc aggttagact tatttagctc catattcacg
     5101 taaccatacc cttgaggcag gacatcgtta aaaatcgccc gtcccacagt tgtctctata
     5161 atcccgcgct cctcaatggg ctggccctgg gaaaggtcaa aaatcaggcc aacccttaat
     5221 ttgatcccgg cattcagcgc taccgagccg tcattataag cgcaagaaac ctcatccgcg
     5281 caagagaaga tcctgccttc gccttttgcc cccggccttt gtttgctcaa aaaagaacag
     5341 cccaaaacaa tatcctgggt aggggtaaca ataggcctgc cgtctgccgg agaaaagaca
     5401 ttgttggtgg acatcatcag catacgggtc tctacctggg cctcaatgga taaaggcaca
     5461 tgcaccgcca tctggtcgcc gtcaaaatcg gcgttaaagg cggtacaaac caaaggatgg
     5521 atgcggatgg ccttgccctc aatcaagacc ggttgaaagg cctggatact taagcggtgc
     5581 agggtggggg cgcggttaag cattaccgga tggtcgcgga taacctcatc taagatatcc
     5641 cagacctcaa tcttggccct ttccaccatt ctcttagcgc ctttaatgct gtggacaaac
     5701 cccttttccc gtagtttctt gataataaac ggctcaaaca actccagggc catctgcttg
     5761 ggcaggccgc actgatgcat ctttaattcc gggcccacca caataaccga acgtccggaa
     5821 taatccaccc ttttgcctaa aagattctgg cggaaacggc cctgcttgcc ttttaacata
     5881 tcggataaag actttaaagg acggttgttg gcgcccataa ccgcccgtcc gtgcctgccg
     5941 ttatctaaaa gcgcgtccac cgcttcctgg agcatccttt tttcgttgcg gataattatc
     6001 tccggggcat tcagctcaat cagttttctt aaacggttgt tccggttaat cacccggcgg
     6061 tacaggtcat taaggtcgct ggtggcaaac cttcctccgt caagcggcac caaggggcgc
     6121 aggtccggcg ggattaccgg caagacttcc aggatcatcc actccggctt attcccggaa
     6181 ttcttgatat cctcaaccag cttcaatatc tttaagttct tgcggttaga gggagtgtct
     6241 ttgccttttt ccaggccttt gcgtatcctg gcgcaaaggt cattaaggtc aatttctttc
     6301 agcaggtcgc ggatggcctc cgcgccgatc tgggccttaa aattagagcc gtacttttct
     6361 aagcaggcct ggtacttctc ctcgcttaaa agctccatct tcttaagcgg ggtatcctgg
     6421 gggtcaacca ccacatattc ttcgtagtag atgacctttt ccagctcccg caggcctaaa
     6481 tctaaaagcg cggacaaacg gctgggaacg gccttaaaaa accagatatg ggtcaccggc
     6541 gcggccagct caatatgccc catcctctcc cggcgcaccg aagaacgctc aacagtcact
     6601 ccacagcggt cacaggttat cccgctaaac tttatacctt tatattttcc gcagttgcac
     6661 tcccagtcct ttaccgggcc aaaaatcttt tcgcagaaaa gaccgccctt ttccggcttt
     6721 aaggtgcggt aatttatggt ttccgccttc ttgacctctc cttttgacca ggaacggatt
     6781 acctggggag
//
LOCUS       DATDUB010000094         2511 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1890138, whole genome shotgun sequence.
ACCESSION   DATDUB010000094 DATDUB010000000
VERSION     DATDUB010000094.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2511)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2511)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2511
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1890138"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..291)
                     /locus_tag="VJA84_01820"
     CDS             complement(<1..291)
                     /locus_tag="VJA84_01820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40894.1"
                     /translation="MENEYVETPVSKELIYGSLKGLLSSLDPFSEFLEPERYEELRSD
                     TEGKFGGLGLEITIKDGMLTVVTPIEDTQAWKAGISPGDRIVKIDAEPTKDIT"
     gene            complement(798..2219)
                     /gene="gatB"
                     /locus_tag="VJA84_01825"
     CDS             complement(798..2219)
                     /gene="gatB"
                     /locus_tag="VJA84_01825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018702317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016884 - carbon-nitrogen ligase activity,
                     with glutamine as amido-N-donor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatB"
                     /protein_id="HLD40895.1"
                     /translation="MDYEIVIGLEVHTHLKTLTKAFCGCSTLFGAQPNTQVCPVCLGL
                     PGSLPVLNEKLLEYGIKAGIALDCRIQEFTKFDRKHYFYPDLPKNYQISQYDLPLAVN
                     GFLEIESAGHKKKISIKRVHMEEDAGKLIHDGVSSLVDYNRAGMPLLEIVSEPEINSP
                     DEAYEYLTGLKAILKYLEVSDCDMEKGSLRCDANISLRPQGAKELGTKTELKNLNSFK
                     AVRDALAYEAKRQKGLLDAGQKVIQQTLLWDDAAGKSQPMRSKEEAMDYRYFPEPDLP
                     PFVLEPQRIKDITDKLPELPAAFKERLIKDYGLGSYDAGLLTAEKAMAKYFESLYKVY
                     PQAKIISNWLIGQVTYESNSRNLDIASLNLSPENLAGLLEAVEKGRISNLAAKDVLTQ
                     MLDSGKSADEIIEEKGLAQISDSSELSSAADKVIAENAKSVNDYKAGKANALMFLVGQ
                     VMKLTKGKANPKIVQEILREKLE"
     gene            complement(2219..>2511)
                     /locus_tag="VJA84_01830"
     CDS             complement(2219..>2511)
                     /locus_tag="VJA84_01830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020475329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HLD40896.1"
                     /translation="EVFKDFDCIISPTSPSPAFRLGEKTQNPLAMYLSDIYTISVNLA
                     GIPAISIPCGFSKDGLPIGLQIMAKPFDEEMIFRTAHCYEQAAPWHTLRPEI"
BASE COUNT          616 a          672 c          549 g          674 t
ORIGIN      
        1 ggtaatatcc ttagtgggtt ccgcgtcaat cttgacaatc cggtcaccgg gggagatgcc
       61 ggccttccag gcctgggtat cctcaatcgg ggtaaccacg gtaagcatcc cgtccttaat
      121 ggttatttcc agccccaagc ccccgaactt gccttcggta tcgctcctta attcttcata
      181 cctctcgggc tcaaggaatt cgctaaacgg gtccaaagaa gaaagcagtc cttttagcga
      241 gccgtaaatc agttccttgg aaaccggtgt ttccacatat tcattttcca ccaggcttaa
      301 ggcatcggaa aaaagctcca gctgtttata cagctcattc cttttcttgc gcgggtcatc
      361 cttctgggcg gattaggccc aaaaaacaat acccagcaag aataccacgg ctaatccact
      421 gcttatgact attttcttac gcatctaatt ctccttatcc cgggtatacg ctcccctaac
      481 ccctcccaca aggagagggg aatttaacgt tgaaaaaccc gtcattgcga gccccgaagg
      541 ggcgaagcaa tcccgctttt gagattgctt cggtcgcttc gctccctcgc aatgacacaa
      601 aaattggggt ttttcagtgt aaactaaagt agtgtcccta acgcttcttt acttttgata
      661 atcttcgtca tcctgaggag cgatagcgac gaaggatcta aaatacgaga ttcttcggct
      721 tcgcctcaga atgacaataa tgtaagagac tataagtaaa gagacttata agacactaca
      781 ctaactaaaa ttttttatta ttccaatttc tccctcaata tctcctgaac aatcttagga
      841 ttggccttgc ccttggtcag cttcatcacc tggccgacca ggaacatcag ggcattggcc
      901 ttaccggctt tataatcgtt gaccgacttg gcgttttcgg caatcacctt atccgccgcc
      961 gaagacaact ccgaagaatc cgaaatctgg gccagcccct tttcctctat aatctcatcc
     1021 gctgattttc cgctgtctaa catttgggtc aatacatcct tggcagcaag attgctgatc
     1081 ctgccctttt ctacagcctc taacaatccg gccagattct ccggagaaag atttaacgac
     1141 gcgatatcaa ggttgcggga gtttgattca taagtaacct gtccaatcag ccaattgctg
     1201 attattttcg cttgaggata aaccttatac agcgactcaa aatacttagc cattgccttt
     1261 tccgcggtca ggagcccggc atcataactg cctaatccgt aatctttgat cagcctttcc
     1321 ttaaaggccg cgggcagttc tggaagttta tccgttatgt ccttgatcct ctgcggctca
     1381 aggacaaacg gcggcaggtc cggctccggg aaatagcggt agtccattgc ctcttcctta
     1441 ctgcgcatcg gctggctttt tccggcggca tcatcccaga gcagggtctg ctgaattacc
     1501 ttctggccgg catccagcag gcctttttgc cttttggcct cataagccag ggcatcccgg
     1561 accgccttaa aagaattcag attctttaat tcagtttttg tccccagctc tttggcccct
     1621 tgagggcgca gggagatgtt ggcatcgcac cttaaagagc ccttttccat atcgcagtcg
     1681 ctgacttcta agtatttaag gatggccttt aaaccggtta aatattcata ggcctcatcc
     1741 ggggaattta tctccggctc gctgacaatt tccaaaagcg gcatcccggc ccggttataa
     1801 tccaccaggc tggaaacacc atcgtggata agcttgccgg catcctcctc catatgcacc
     1861 cgctttatgc tgattttttt cttatgtcct gccgactcta tctccagaaa accattcacc
     1921 gccaaaggca ggtcatactg agaaatctgg taattcttgg gcaggtcagg ataaaaataa
     1981 tgcttgcggt caaatttggt aaattcctgg atccggcaat ctaaggcgat gcctgcttta
     2041 atgccatatt ccagaagttt ctcatttaat accggcaggc ttcccggcag ccccaggcac
     2101 accgggcaga cctgggtatt cggctgggcc ccgaataaag tggaacagcc gcaaaaggcc
     2161 ttggtcaggg tctttaaatg ggtgtggact tccaagccaa taacaatttc gtaatccatc
     2221 agatttcagg cctcaaggta tgccagggag cggcctgttc atagcaatgc gccgtccgga
     2281 aaatcatctc ttcgtcaaat ggtttagcca taatctgcag gccgataggc aatccgtctt
     2341 tactgaatcc gcaagggata gatattgccg ggataccggc cagatttacc gaaatcgtgt
     2401 agatatccga caaatacatt gccaggggat tttgcgtttt ttcacccagc ctaaaggcgg
     2461 gactcgggga ggtcgggctg ataatacagt caaaatcctt aaagacctcc g
//
LOCUS       DATDUB010000095         9846 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_570183, whole genome shotgun sequence.
ACCESSION   DATDUB010000095 DATDUB010000000
VERSION     DATDUB010000095.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 9846)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9846)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9846
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_570183"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            133..732
                     /locus_tag="VJA84_01835"
     CDS             133..732
                     /locus_tag="VJA84_01835"
                     /inference="COORDINATES: protein motif:HMM:TIGR00427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarC family protein"
                     /protein_id="HLD40897.1"
                     /translation="MWESFRPYILTFIPIFVAVDALGNIPLFISLTHSLSKKHKSRVI
                     QESIVTATVIAIGFMFLGKAVLRILGITVADFQIAGGILLLVISTNLLLSGRRKGSAL
                     TEKNESVGVFPLGTPLITGPAVLTMTMIVRDAFGWVPALVSIILIMLIVWASFQYTDF
                     FLRLIGESGMRAFAKIIYILLAAIAVMMMRKGIMGVLGL"
     gene            732..1970
                     /gene="glgC"
                     /locus_tag="VJA84_01840"
     CDS             732..1970
                     /gene="glgC"
                     /locus_tag="VJA84_01840"
                     /EC_number="2.7.7.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002655931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008878 - glucose-1-phosphate
                     adenylyltransferase activity [Evidence IEA];
                     GO_process: GO:0005978 - glycogen biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate adenylyltransferase"
                     /protein_id="HLD40898.1"
                     /translation="MRKVLTFIMAGGKGERLLPLTNDRAKPAVPFGGIYRIIDFTLSN
                     CINSGLRRINVLTQYKSISLQRHLRMGWNIFNSDLGEYIDVIPAQQRVGSDWYRGTAD
                     AIYQNIYTIEQEKADEIVILAGDHVYKLNYYQMIDFHRSQGADLTVSVFEIEKENSAH
                     LGVVETDAKGGVLGFEEKPSRPKVIPDKPDKIYASMGIYVFNREVLEEELIDDAKKNT
                     DHDFGKNIIPQMVRKGKKICAFNFSALKSEGECLSDRDAAYWRDIGTVDGYYEANMDL
                     LGAEPIFSLYDQNWPVRTYQEQFPPARTIHSDEEAGRVGQLLDSLVSSGCVISGGKVQ
                     RSVLSPNVRINSFSEVYDSILMEGVDVGRYAKIQRAIIDKEVKIPRNAVIGYDLKEDK
                     KRFTVTDSGIVVVGKGTEIK"
     gene            2018..2425
                     /locus_tag="VJA84_01845"
     CDS             2018..2425
                     /locus_tag="VJA84_01845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015744355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043169 - cation binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HLD40899.1"
                     /translation="MPRLVQDLKHEHVLITDLFKSVKEAGVSSQEGRERLLAAKKGLL
                     GHLKKEDEKLYPILKEAAKADPSLQATLDLFAREMEEVSALALRFFNKFSQAGASGME
                     FARDFGQLAAKLGSRIRKEENILYAEYDKLRQD"
     gene            2425..2874
                     /locus_tag="VJA84_01850"
     CDS             2425..2874
                     /locus_tag="VJA84_01850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013910302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HLD40900.1"
                     /translation="MLRKAGIADIKQIQRLINGFADKDLMLGRSLNELYENLRDFFVY
                     EKKGKILGCSALHICWDDLVEIKSLAVERRCQKQGLGRQLVEACIEEAKGLGAGSVFT
                     LTYVPDFFRKLGFKKIEHKKLPHKIWAECINCPKFPDCQETALIRKL"
     gene            2887..4038
                     /locus_tag="VJA84_01855"
     CDS             2887..4038
                     /locus_tag="VJA84_01855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012546471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase"
                     /protein_id="HLD40901.1"
                     /translation="MDYLLTEEQVMIRDLCRQIAREKIAPVALEYDKTEKFPHDIMKI
                     LADSDLFAIFVPEEYGGTGGGVLDMSIATEELSRACGGIAVCYAASALGTYPIILFGN
                     EEQKKKYLPPLAKGKTIAAFGITEPEAGSDASAIKTTAVKKGDHYILNGTKHFITNGS
                     EAGIYTVIAMTNASKGARGASAFILEKGMPGFTFGKKEDKMGIRASVTSELIFTDCKV
                     PKENLLDKEGMGFIITMKTFDKSRPGVASQAVGIAQGALDLAVKYAKERKQFGKSISS
                     FQGIQWMLADMATKVEASRALVYACARMIDNGNTNVAKDSAMAKLFASDSAMQVSTDA
                     VQILGGYGYMKEYPAEKFMRDAKITQIYEGTNQIQRNIIALQLIREMAK"
     gene            4133..4912
                     /locus_tag="VJA84_01860"
     CDS             4133..4912
                     /locus_tag="VJA84_01860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020252227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit beta/FixA
                     family protein"
                     /protein_id="HLD40902.1"
                     /translation="MNIIVCIKQVPETTEVRINPETNTLMREGVKSIINPFDMYAIEE
                     GVRLKEKVGGKVTVLTMGPPQAETALKEAISLGADEAVLLSDRAFAGSDTWATSYTLA
                     AGVRKLKDYDLIICGKQASDGDTAQVGPGIATHLDIPQVTYVKKIEEVKDKSIKVERM
                     TEEGYEIIESSLPLLITVVKEINTPRLPSLRGLMRSKQAKITVLGVKDLDVDSSNLGL
                     CGSPTQVAKIFTPPARPEGEKIEGTAEEIAVKLAGILKKER"
     gene            4914..6113
                     /locus_tag="VJA84_01865"
     CDS             4914..6113
                     /locus_tag="VJA84_01865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013780943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit alpha"
                     /protein_id="HLD40903.1"
                     /translation="MPIQIIIEKCTGCTLCLKVCPFDAIRMMDKKAVINYDKCTLCGA
                     CVPACKFKAILLQKEVCPVNDGFKDYKGVWVFAEQKKGKVQPIAFELLGKARELAADL
                     GADVSAVLLGDRLEEEIQELIWRGADKVYVAERLELANFQDEPYTNVIVELINKYKPE
                     AFLCGATSIGRSLISRIAIKIKAGLTADCTELAVDKEKKILLQTRPAFGGNIMATIVC
                     PNYRPQMATVRHKVFPEAVSDMKRKGKVIRESFEGAILNSRTRLLDIIDEIESTVNIA
                     DADIIVAGGRGMKSPENFRLLEDLAKILGGAVGASRAAVDAGWMPYSHQVGQTGKTVC
                     PKVYIACGISGQIQHLVGMQSAKTIIAINSDPYAPIFKVANYGIVGDALEIAPLLTRK
                     LKEGLKK"
     gene            6117..7790
                     /gene="ilvB"
                     /locus_tag="VJA84_01870"
     CDS             6117..7790
                     /gene="ilvB"
                     /locus_tag="VJA84_01870"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007223422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005948 - acetolactate synthase complex
                     [Evidence IEA];
                     GO_function: GO:0003984 - acetolactate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009097 - isoleucine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009099 - valine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic-type acetolactate synthase large
                     subunit"
                     /protein_id="HLD40904.1"
                     /translation="MKMIGAQILIESLEREGVQVMFGYPGGVVLPIFDRLYDAKIRFI
                     LTRHEQGAAHAADGYARATGKVGVCLATSGPGATNLTTGIANAYMDSIPMVAITGQVK
                     TNLIGNDAFQEADITGITRSISKHNYLVKDVRDLARVVREAFHIASTGRPGPVVIDLP
                     VDVQQAECEFIWPEEVNIPGYKPTYFGHSGQIKKAARLISESKRPILYIGGGVITSGA
                     HNEVKELAEAIAAPVTMTMMGLGAFPGTHELSLGMLGMHGTAYANHATMESDLIIAIG
                     ARFDDRVTGRVSDFAPQAKIIHIDIDPTSISKTVRVDVPVVGDARNVLGQLREEIKKK
                     PDTGKWLEQIKEWKAHHPLRYRHEDDKIKPQFVIEQIYEATLGEAIIVTEVGQNQMWS
                     CQWYKYASPRTFISSGGLGTMGFGLPAAMGVKVGCPEKTVFDIAGDGSIQMNIQELMT
                     VVANKIPVKVAILNNGYLGMVRQWQELFYKRRYSHTKLDNPDFVKLAEAYGAVGMRIT
                     KKEDVREAIEKAIEIDNTVVLDFVVEEEENVYPMVPAGEAINRMIGGMA"
     gene            7818..8312
                     /gene="ilvN"
                     /locus_tag="VJA84_01875"
     CDS             7818..8312
                     /gene="ilvN"
                     /locus_tag="VJA84_01875"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004512106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1990610 - acetolactate synthase regulator
                     activity [Evidence IEA];
                     GO_process: GO:0009082 - branched-chain amino acid
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HLD40905.1"
                     /translation="MRHTISVIVENKFGVLARIAGLFSARGYNISSLAVSETNDPAVS
                     CMTIVVEAEDEKILEQIKKQLNRLIDVLTVTDFTKKDHVERELILIKLDCPAKSKAKL
                     EKALEKCGARLIRRPSASPRGEQADSATVEFTGEQAKIKGLLEELGQFKIKELVRTGK
                     IAIG"
     gene            8449..9444
                     /gene="ilvC"
                     /locus_tag="VJA84_01880"
     CDS             8449..9444
                     /gene="ilvC"
                     /locus_tag="VJA84_01880"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009610487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HLD40906.1"
                     /translation="MAKIYYDKDADLGLLKDKTIAIIGYGIQGRGQSLCLRDSGCKVV
                     VSEMEGAPNFEQAKKDGFTPLSAQEACAKGDIIQILTQDHVQSKVYQQAVKPNLKKGK
                     ALCFSHGFNIHFKEIIPPKDVDVFMVAPKGPGALVRRMYEEGKGVPSLVAVFQNATGK
                     ALAVALAYAKALKATKAGVIETNFKEETETDLFGEQAVLCGGVTELIKAGFDTLVGAG
                     YQPEIAYFEVLHELKLITDLIQEYGISGMRRRVSNTACYGDLSRGPRIITKETRKEMK
                     KMLKEVQSGKFAKEWIKENELGRPNYNKLLKKGDQHPIEKVGNQLREMMPWMRKK"
     gene            9474..>9846
                     /locus_tag="VJA84_01885"
     CDS             9474..>9846
                     /locus_tag="VJA84_01885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40907.1"
                     /translation="MLKYKKSLSVSLVMVLFSCSLASAMIKRPPARYTVLVNNDIRHS
                     DENFVSNRLDMSFSRELNKKVTARLTPFVEVRHNLERRKMERVSTGVEMGLDFGGYFY
                     AGEQLRQTWRSEPVYNRGIIKN"
BASE COUNT         2483 a         2196 c         2859 g         2308 t
ORIGIN      
        1 cgaaggatct cgttttttaa attagcgacg ggattcttcg gtcgctctgc tcgctcagaa
       61 tgacaaaatg gtcaattcaa gagattgcga cacagcctga tttagtgttt agaatttagt
      121 gtttaaaatc ttatgtggga atcttttagg ccgtatatat tgacttttat ccctatcttc
      181 gtggcggtgg atgccttggg gaatattccg ctttttatct ctcttaccca ttccttaagc
      241 aaaaaacata aatcccgggt aattcaggag tccattgtta ccgctacggt tatcgcgata
      301 gggtttatgt tcttaggcaa ggcggtgttg aggatcctgg ggataaccgt ggctgatttt
      361 cagatcgccg gagggatatt gcttttggtt atttccacta atctcctttt gtccggaagg
      421 cgcaagggct cggctttgac cgagaagaac gaaagcgtgg gggtgttccc tttaggcact
      481 ccgcttatta ccggaccggc ggtgctgacg atgacgatga ttgtccggga cgcctttggc
      541 tgggttccgg ccttggtttc catcatattg attatgctga ttgtctgggc cagttttcag
      601 tatactgatt ttttcctgcg cttaatcggc gagtccggga tgcgggcctt tgccaagatt
      661 atttatattc ttctggcggc tatcgcggtg atgatgatgc gtaaagggat aatgggggta
      721 ttgggcttat gatgcgcaag gtcttgactt ttattatggc cgggggaaaa ggcgagcggt
      781 tgcttcccct taccaacgac cgggccaagc cggcagtgcc ttttggcggg atttatcgga
      841 taattgattt tacattgtct aactgcatta actccggcct gcgccggata aatgtgctta
      901 cccagtataa atccatttct ttacagcgcc acctgcgcat gggctggaac atctttaatt
      961 ccgaccttgg cgaatatata gatgtcattc cggcccagca gagggtgggc tcggactggt
     1021 accgggggac cgcggatgcc atctaccaga atatctatac tattgagcag gaaaaggcgg
     1081 atgagatagt tatcctggcc ggcgaccatg tctataagct taactattac cagatgattg
     1141 attttcaccg cagtcagggg gcggacctga ccgtcagcgt ctttgagatt gaaaaagaga
     1201 actccgcgca tctgggggtg gttgagaccg atgccaaagg cggggtgctg ggctttgagg
     1261 aaaaaccctc ccgtcccaag gtgatcccgg acaagccgga taagatttac gcctcaatgg
     1321 ggatatatgt ctttaaccgg gaggtcttgg aggaagagtt gattgatgac gccaagaaga
     1381 ataccgacca tgactttggc aagaatatca tcccccagat ggtaaggaag ggcaagaaaa
     1441 tctgcgcctt taatttctcc gccttgaaat ccgaagggga atgcctctcg gaccgggacg
     1501 cggcatactg gcgcgacatc ggaaccgttg acggatacta tgaggcgaat atggacctcc
     1561 tgggggcgga gccgattttt agcctgtatg accaaaactg gccggtgcgc acctatcagg
     1621 aacagtttcc tcccgcccgg accatccact ccgacgaaga ggcggggcgg gtgggccagc
     1681 ttctggattc cttggtttcc agcggatgtg tgatcagcgg gggaaaggtc cagcgttcgg
     1741 tattatctcc caatgtgcgc atcaacagct tttccgaggt atacgattcc atcctgatgg
     1801 aaggggtgga tgtaggcagg tatgccaaga tacagagagc gataatagac aaggaagtaa
     1861 agatcccccg taacgcggtg atcggctatg acctgaaaga ggataaaaaa aggtttacgg
     1921 ttaccgattc ggggattgtg gtggtaggaa aaggcacgga aataaaatag cggtttttca
     1981 ggcaatgagg cctgggtgta ggagaggaga aaaagcaatg ccgcgtttgg tccaggattt
     2041 aaaacatgag catgtcttaa ttacggattt attcaaatcg gtcaaggagg ccggggtgag
     2101 ttcccaggaa ggcagggaaa ggcttttggc cgccaaaaag gggcttctgg ggcatttaaa
     2161 gaaagaggac gagaaactct atcctatcct gaaagaggcg gctaaggccg accccagcct
     2221 gcaggctacc ctggatttat ttgccaggga gatggaagag gtgagcgctt tggctttaag
     2281 attttttaat aaattttctc aagccggagc ttccgggatg gagtttgccc gggatttcgg
     2341 ccagctggcg gctaaattag gctcccggat ccgcaaggag gagaatatcc tctacgcgga
     2401 atatgataaa ctgcggcagg attaatgtta agaaaagccg gcatcgccga tataaaacag
     2461 atccagcgct taatcaacgg tttcgcggat aaagacctga tgctggggcg ctctttgaac
     2521 gagctgtatg agaatttaag ggactttttt gtttatgaaa aaaaaggaaa gatcctcggc
     2581 tgttcggccc tgcatatctg ctgggatgat ttggttgaga taaagtccct ggcagtggag
     2641 cgccgctgtc agaagcaggg cctaggccgg cagttggttg aggcctgtat agaagaggca
     2701 aaaggtttgg gggcgggaag cgtatttacc ttgacttatg tcccggattt cttccggaaa
     2761 ttgggcttta agaagattga gcataagaaa ctgccgcata aaatctgggc cgagtgcatc
     2821 aattgcccga agttcccgga ctgtcaggaa acagcgttga tcaggaagtt atagggagga
     2881 ataaaaatgg attatttgtt gactgaagag caggtgatga ttcgggattt gtgccggcag
     2941 attgcccggg aaaagatcgc cccggtggcc ttggaatatg ataagaccga gaaattccct
     3001 catgatataa tgaaaatcct ggcggatagc gacctcttcg cgatttttgt ccccgaagaa
     3061 tacggcggca ccggaggcgg ggtcctggat atgagcattg ccaccgagga gctctcccgg
     3121 gcctgcggcg ggattgccgt ctgctacgcg gcctcggccc tggggacata cccgataatc
     3181 ttattcggca atgaggagca gaagaagaaa tacctcccgc cgctggctaa aggaaagact
     3241 attgccgcct tcgggatcac cgaacccgag gccggctccg acgcctccgc gatcaagact
     3301 accgcggtaa agaaaggcga tcattacatc ttaaacggga cgaagcattt tatcaccaac
     3361 ggctcggagg ccggtatcta cacggtaatc gcgatgacta acgcctctaa aggggctaga
     3421 ggggcctcgg ccttcatctt ggaaaaaggg atgccgggat ttacttttgg caagaaagag
     3481 gataaaatgg gtatccgggc ctcggtgacc agcgagctca tttttaccga ttgcaaggtg
     3541 cccaaggaga atcttctgga taaagaaggg atgggtttta ttattacaat gaagaccttt
     3601 gataagtccc gccccggagt ggcctcacag gcggtgggga ttgcccaggg ggccttggat
     3661 ctggcggtta aatacgccaa ggaaagaaaa cagttcggca agtctatctc cagcttccag
     3721 ggaatacaat ggatgctcgc ggatatggct accaaagtag aggcctcccg ggctttggtc
     3781 tatgcctgcg ccaggatgat tgataatggg aataccaatg tggccaagga ttcggcaatg
     3841 gccaagctct ttgcctcgga ttcggcaatg caggtctcta ccgacgcggt ccagatcctg
     3901 ggcggctatg gatatatgaa ggaatacccg gcggaaaagt ttatgcgcga tgccaagatc
     3961 acccagatat acgaagggac taatcagatc cagcgcaata ttatcgccct gcagttgatc
     4021 cgggaaatgg ccaagtaaag aacgcagaac cacgcggaac gccacgcaga accacgcata
     4081 acctatatcg cgttgttccg cgtaaagttc cgcatagttc cgcgatatta agatgaatat
     4141 aattgtctgc ataaaacaag tccccgagac cacggaggtc aggatcaatc cggaaaccaa
     4201 taccttgatg cgcgaggggg taaagtccat cattaaccct tttgatatgt acgcgattga
     4261 ggaaggggtg cggctgaagg agaaggttgg cggcaaggtt acggtattga ctatgggccc
     4321 gcctcaagcg gaaacggctt tgaaggaggc catctccctg ggcgcggatg aggcggtatt
     4381 attgtccgac cgggcctttg ccggaagcga cacctgggcc accagctata ccctggccgc
     4441 cggggtgcgc aaacttaaag attatgattt gattatctgc ggcaaacagg cctccgacgg
     4501 agatactgcc caggtggggc cgggaatagc cactcactta gacatcccgc aggtaactta
     4561 tgtcaagaaa atagaggaag taaaagataa gtccattaag gtggagcgga tgactgaaga
     4621 ggggtatgag atcattgaat ccagcctgcc tctgcttatt acggtagtta aggagattaa
     4681 taccccccgg ttgccttccc tgcgcggact gatgcgctcc aaacaagcca aaataaccgt
     4741 attgggggtt aaggacttgg atgtggatag ctctaacctg ggattgtgcg gctctcccac
     4801 ccaggtggcc aagatcttta ccccccctgc ccgtccggaa ggagaaaaaa ttgagggaac
     4861 ggctgaagag atcgcggtca aattagccgg gatattaaag aaggaaagat aatatgccca
     4921 tacaaatcat tatagagaaa tgcaccggat gcaccctttg cctgaaggtc tgcccttttg
     4981 acgccatccg gatgatggat aaaaaggccg tcattaacta cgacaaatgc accctttgcg
     5041 gcgcctgcgt gccggcctgc aaatttaagg ccatcctttt gcagaaggaa gtctgcccgg
     5101 ttaatgatgg ttttaaggat tataaagggg tttgggtttt tgccgagcag aaaaagggca
     5161 aggtccagcc tatcgccttt gagctcctgg gtaaggccag ggagttggcc gcggacttag
     5221 gcgctgatgt ttccgcggta ttgctggggg accggctgga ggaggaaatt caggagctga
     5281 tctggcgggg cgcggacaag gtctatgtgg ccgagagatt ggaattagcc aacttccagg
     5341 atgagcctta taccaatgtc atagttgagt tgatcaataa atataaaccg gaggcctttc
     5401 tctgcggggc cacctccata ggcaggtccc tgatttcccg gatcgcgatt aagataaagg
     5461 ccggcctgac cgcggattgc acggagctgg ctgtggataa ggagaaaaag atccttttgc
     5521 agacccgtcc ggcattcggc ggtaatatta tggctaccat agtctgtccg aattaccggc
     5581 cccagatggc tacggtccgg cataaggtgt ttccggaggc ggtctcggat atgaaacgca
     5641 agggcaaggt catccgggaa agctttgagg gggcgatttt aaacagccgc acccggcttc
     5701 tggatatcat tgatgagatt gagtccacgg taaatatagc tgatgccgat atcattgtgg
     5761 ccggggggag agggatgaag tccccggaga atttcaggct cttggaagat ctggctaaga
     5821 ttttgggcgg ggcagttggc gcctcccggg ccgcggtgga tgccggatgg atgccctatt
     5881 cacatcaggt aggccagacc ggtaagaccg tctgccctaa ggtatatatt gcctgcggta
     5941 tttcaggtca gatccagcac ttggtgggga tgcagtcggc aaaaactatt atcgccataa
     6001 attccgaccc ctatgccccc atcttcaaag tggctaacta cggcatagtg ggcgatgcct
     6061 tagagatagc gcctctttta accagaaaat taaaagaagg acttaagaaa taaaatatga
     6121 aaatgatcgg ggcgcaaata ttgattgagt ctttggagcg ggagggggtc caggtgatgt
     6181 ttggataccc tggcggggtg gtcctgccta tttttgaccg gctctatgac gctaaaatcc
     6241 gctttatcct tacccgccac gagcagggag cggcccatgc cgccgacggc tatgcccggg
     6301 ctaccggtaa ggtgggggtc tgtctggcta cctccgggcc gggagccacc aatcttacca
     6361 ctggcatcgc taacgcctat atggattcta tcccgatggt ggccattacc ggacaggtga
     6421 agaccaatct tatcggtaac gacgcctttc aggaggcgga cattaccggg atcactcgtt
     6481 caatctccaa gcataattat ttggtaaagg atgtccggga tttagcccgg gtagtgcgcg
     6541 aggcctttca tatcgcttca accggcaggc ccgggccggt ggtcattgac cttccggtgg
     6601 atgtccagca ggcagagtgc gagttcatct ggccggaaga agtgaatatc ccgggctata
     6661 agccgactta tttcgggcat tccggccaga ttaaaaaggc ggccaggtta atcagcgaat
     6721 ctaaaaggcc tatcctttat atcggcgggg gagtgattac ctccggcgcc cacaacgaag
     6781 ttaaggaatt ggccgaggct atcgccgccc cggttacaat gacaatgatg ggcttaggcg
     6841 cctttccggg gacccatgag ctttctctgg ggatgctggg gatgcacggc actgcctatg
     6901 ccaaccacgc cacaatggag tcggacctga ttatcgcgat aggcgcccgt tttgacgacc
     6961 gggttaccgg aagggtgagc gactttgccc cccaggccaa gattatccat attgatattg
     7021 accctacttc catcagcaag accgtgcggg tggatgtccc tgttgtcggc gatgccagga
     7081 atgtcctggg ccagctccgg gaagagatta agaaaaaacc ggataccgga aagtggctgg
     7141 agcagatcaa ggagtggaag gcccatcatc ctttaaggta ccgccatgaa gacgataaaa
     7201 tcaagcccca gtttgtgatt gagcagattt atgaggccac tctcggtgag gcgattattg
     7261 ttaccgaggt ggggcagaac cagatgtgga gctgtcagtg gtataaatac gcttccccgc
     7321 gcacttttat ctccagcgga ggcctgggga ctatggggtt tggcctgccc gcggctatgg
     7381 gggttaaggt gggctgtccg gaaaagacgg tctttgacat tgccggtgac ggctcaatcc
     7441 agatgaatat ccaggagctg atgacggtgg tggctaataa aataccggta aaggtggcta
     7501 tcctgaataa cggttatctg gggatggtcc gccagtggca ggaactgttt tataagcggc
     7561 gttattcgca caccaagctg gataatccgg attttgtcaa gctggcggag gcctatgggg
     7621 cagtggggat gcggattacc aagaaagagg atgtgcgcga agccattgag aaggccatag
     7681 agattgacaa tacggttgta ttggattttg tggttgagga agaggagaat gtctatccga
     7741 tggtccccgc cggcgaggcg atcaaccgga tgatcggcgg catggcctaa atacagaact
     7801 aagaactaag agctaagatg aggcatacaa tatctgttat agtggagaat aagttcgggg
     7861 tcctggcccg gattgccggt ttattcagcg ccaggggata caatatctct tctttggcgg
     7921 tgagtgagac caacgatccg gcagtctctt gtatgactat tgtggttgag gctgaagatg
     7981 agaaaatctt agagcagatc aagaaacagc ttaaccggct cattgatgtg cttacggtca
     8041 ctgattttac taagaaagac catgtggagc gggagcttat tttgattaag ctggattgcc
     8101 cggctaagag taaagctaaa ctggagaaag ccttggaaaa gtgcggggca aggctcatcc
     8161 gccggccttc ggcttcgccg cgaggcgagc aggcagacag cgcgactgtt gagtttaccg
     8221 gcgagcaggc caagattaaa ggcctgcttg aggaattggg acaatttaag ataaaggaat
     8281 tagtcaggac aggcaagatc gcaattggat aattgctcca cctcgcaagc tgaggcaaaa
     8341 ttctctttga taattttgcc tcgctcggtg gagttaattc gcgcagtgac ttacattcac
     8401 tcgcttcgct cgttccgtaa gtcacgcgct cattaaggag atgatcaaat ggctaagatt
     8461 tattacgaca aggacgcgga tttaggtttg ttaaaggata agaccatagc gattatcggc
     8521 tacggcatcc agggccgggg gcagtctttg tgccttaggg attccggatg caaggtggtg
     8581 gtttcggaga tggaaggcgc cccgaacttt gaacaggcca agaaggacgg ttttacccct
     8641 cttagcgccc aggaggcctg cgccaaaggg gacattatcc agatactcac ccaggaccat
     8701 gtccagtcca aggtctatca gcaggcagtc aagcctaact tgaaaaaagg caaggccttg
     8761 tgtttctctc acgggtttaa tatccatttc aaggagatta tcccgcctaa ggatgtggat
     8821 gtgtttatgg tggcccccaa aggcccgggc gcgttggtga gaaggatgta tgaagaaggt
     8881 aaaggcgtgc cttccttagt cgcggttttt caaaatgcca ccggcaaggc tttagctgtc
     8941 gccttagcct atgccaaggc cctgaaggcc actaaagccg gggtaattga gaccaatttt
     9001 aaggaagaaa ccgagaccga tcttttcggg gagcaggcag tgctctgcgg cggggtaacc
     9061 gaattgatca aggccggatt tgataccctg gtaggcgcgg gttatcagcc ggagattgcc
     9121 tattttgagg ttttgcacga gttgaagttg attactgatt tgatccagga atacggcatc
     9181 agcgggatgc gccgccgggt ttctaacacc gcctgctacg gcgacctaag ccgcggcccc
     9241 aggattatca ccaaggaaac ccgcaaagag atgaagaaga tgcttaaaga ggtgcagtcc
     9301 gggaaattcg ccaaagaatg gattaaggaa aatgaattag gccggcctaa ttataacaag
     9361 ctcttgaaaa aaggcgatca gcatcctata gagaaggtgg gtaatcagtt aagagagatg
     9421 atgccctgga tgcgtaagaa atagtaagga agccggacaa gcaaagcgga tttatgctga
     9481 agtataagaa aagtctatcg gttagcttag taatggtgtt gttttcttgt tctttggctt
     9541 cggcgatgat taagaggcct ccggcgcgtt ataccgtatt ggttaacaat gacatccggc
     9601 attccgacga aaattttgtc tctaaccgtt tggatatgtc ttttagcaga gaactgaata
     9661 aaaaggtcac tgccaggtta acccctttcg tggaggtccg tcacaacttg gaaaggcgca
     9721 aaatggagag ggtttctacc ggagtggaga tgggattgga ttttggcggt tacttctatg
     9781 ccggagagca gctgcgccag acctggcgtt ccgagccggt ttataaccgc gggataatta
     9841 agaata
//
LOCUS       DATDUB010000096         2565 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1238422, whole genome shotgun sequence.
ACCESSION   DATDUB010000096 DATDUB010000000
VERSION     DATDUB010000096.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2565)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2565)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2565
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1238422"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..232
                     /locus_tag="VJA84_01890"
     CDS             <1..232
                     /locus_tag="VJA84_01890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40908.1"
                     /translation="VFFSLVLSLTLSAQDYYKKQKPAPAQETRKEAVSEEKYKDLEKG
                     QQAILKKLDQLLSGQEKILKELEIVKVRASKR"
     gene            234..2024
                     /gene="pilM"
                     /locus_tag="VJA84_01895"
     CDS             234..2024
                     /gene="pilM"
                     /locus_tag="VJA84_01895"
                     /inference="COORDINATES: protein motif:HMM:NF022554.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly protein PilM"
                     /protein_id="HLD40909.1"
                     /translation="MPEIINSAENKAPETKAGFKLPLGEIFSFVKNIFASAQNSIGID
                     LGSSAIKIAQLQKGAKGYTITNYITRSLPRNIKDNPEEKKRLVKEFVKEFVAESRVKT
                     SLGRLAVWGKGVFVFSFNVPALNKKDLRGAVSMELKKRLPFHTGLESLVFDFFVTGQT
                     RDEKGLNLSQVTCIACDKIRLEEEVQFLKDIGIRPIAINSVADAIGNLVPFCSDIPAA
                     KTAAVLDIGANTTTLNFYKAGLLLFSREIPIAGEHFSQAMTKTIPTAQGALTINPEDA
                     EKIKRQCGIPLEEEAKNEFLTDFGMLTGEQISSMLRPNLERLLMEVNRTFSYYASNFK
                     SPLTNIEGLYLTGGSSRLKNLKEFLQHNLKEVKKIDHLNVLKAAKSWKETSIFKHELV
                     MEQAAPHLACAFGLALAKGGRINLLPAKEKLEQNISFLNSLSKIAFPFIFILSLLYFA
                     MDAAENNRYKKLIKETQGQIKQLEPHSRRAREYLGLKTKLEQRKKLLETASGRQPSWF
                     GIFKELSNITPKEVILRRVSIAEEKTPAAIRLEGKIYSKYTTVDLELSQYIMSLEDSS
                     FFSNIQFSSVPDMYSPVPAADFEITCALTY"
     gene            2026..>2565
                     /locus_tag="VJA84_01900"
     CDS             2026..>2565
                     /locus_tag="VJA84_01900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40910.1"
                     /translation="MQIPKLDKKIETIVIGSGFLLVLILLYAFPGRALFKQKSKLRGE
                     FLAHQESLKESEGLIRAFPNPQKEIAEIENKAQELRDMGASTRQLPRIIQLLAMPANQ
                     LNINVISIRPRDDLNLEAENLPPGVTKVHIELIMNCPYQLFAEYTKAVSGLPTSFIME
                     RMSIEKRGEEDAPAYQAKAS"
BASE COUNT          738 a          700 c          604 g          523 t
ORIGIN      
        1 ggtctttttc tccttagtcc taagcctgac cttaagcgcc caggactact ataagaaaca
       61 aaagcctgcc ccggcccagg aaacccggaa agaggcggta tccgaagaaa aatacaaaga
      121 cctggaaaaa ggccagcagg ctattctaaa aaagctggat caactcttaa gcggccagga
      181 aaagatcctc aaagaactgg aaatagtcaa ggtgcgggca tcaaaaagat aatatgccgg
      241 aaatcataaa cagcgcggaa aataaggccc ccgaaaccaa ggccgggttc aaactgccat
      301 taggagaaat tttctctttt gtcaaaaaca tctttgcctc ggcccagaac tctatcggca
      361 ttgacctggg ttcctccgcc atcaagatcg cccaactgca aaaaggggcc aagggctata
      421 ctatcaccaa ttacatcacc cgctcgctcc cccgcaatat caaagataac ccggaagaaa
      481 aaaaacggtt agtcaaggaa ttcgtcaaag agtttgtggc tgaaagccgg gtcaaaacct
      541 cgcttggccg cctggccgtt tggggaaaag gggtatttgt cttttccttt aatgtcccgg
      601 ccttaaacaa aaaagacctg cgcggggcgg taagcatgga gcttaaaaaa agactgccct
      661 tccataccgg attagaaagc ctcgtctttg acttttttgt taccggccaa acccgcgatg
      721 aaaaaggcct gaacctctcc caggtaacct gtattgcctg cgataagata cgcctggaag
      781 aagaggtcca gttcctcaag gacatcggga tccggcccat agccataaac agcgttgccg
      841 acgccatagg aaatctcgtc cctttctgct ctgacatccc ggcggccaag accgcggcgg
      901 tcttagacat cggggccaat accacaaccc ttaactttta caaagccggt ctgctccttt
      961 tctcccggga aatccccatt gccggggaac actttagcca ggcaatgacc aagaccatcc
     1021 ccacggcgca aggggccctg accatcaatc ccgaagacgc ggagaagatc aagcgccagt
     1081 gcggcatccc cctggaggaa gaggccaaga acgaattcct taccgatttc gggatgctca
     1141 ccggcgagca gatttcctca atgttgagac ccaatctgga gcgcttgctg atggaggtta
     1201 accgcacctt cagctattat gcctctaact tcaagagccc cttgaccaat attgaaggcc
     1261 tctatcttac cggggggagc tcgcggctga aaaacctcaa ggaattctta cagcataatt
     1321 taaaagaggt aaaaaaaatt gaccacctca atgtcttaaa ggccgccaag agctggaagg
     1381 aaacctccat attcaaacac gaactggtaa tggagcaggc cgccccgcac ttagcctgcg
     1441 cctttggcct ggccctggct aaaggcggca gaataaacct ccttccggca aaggaaaaat
     1501 tagaacagaa catttccttc ctgaattcac tttctaaaat cgctttcccc tttattttca
     1561 tcttaagcct tttatacttt gccatggacg ccgcggaaaa caacagatac aagaagctca
     1621 tcaaagaaac ccaaggccag ataaaacagc ttgagcccca cagccggcgg gccagggaat
     1681 acctgggact aaagaccaag ctggaacaaa ggaaaaaact gttagagacc gccagcggca
     1741 gacagccttc ctggttcggg atattcaagg agttaagcaa catcacccct aaagaggtca
     1801 tcctgcgccg ggtatccatc gccgaagaaa agacccccgc ggccataagg ctggagggca
     1861 agatttattc caagtacact accgtagacc tggaactgtc tcaatatata atgagcctgg
     1921 aggactcgtc gtttttcagc aatatccagt tttccagcgt cccggatatg tattcacccg
     1981 ttccggcggc ggattttgag attacctgcg cgctcactta ttaatatgca aataccaaaa
     2041 ttagacaaaa aaattgagac catcgttatc ggctcggggt tcctgctggt tttgatcctg
     2101 ctctacgcct ttcccggacg ggcattgttt aaacagaaaa gtaaactgcg gggtgaattc
     2161 ctggcccatc aggaaagcct gaaggaatcc gaaggcctga tccgggcctt tcccaacccc
     2221 cagaaagaga ttgccgagat agaaaacaag gcccaggaac tgcgggatat gggcgcctcc
     2281 acgcgccaac tgccccggat catccagctt ctggcaatgc cggccaacca gctcaacatc
     2341 aatgtcatct ccatccggcc gcgggatgat ctaaacctgg aggcggagaa tctccccccg
     2401 ggggtaacca aggtgcatat agagctgata atgaactgcc cgtatcagct ttttgccgaa
     2461 tacaccaagg cggtgagcgg tctgcccaca tcctttataa tggaacggat gagcatagaa
     2521 aaaagggggg aagaggacgc cccggcctat caagccaagg cttcg
//
LOCUS       DATDUB010000097         2901 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1408418, whole genome shotgun sequence.
ACCESSION   DATDUB010000097 DATDUB010000000
VERSION     DATDUB010000097.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2901)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2901)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2901
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1408418"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..765)
                     /locus_tag="VJA84_01905"
     CDS             complement(<1..765)
                     /locus_tag="VJA84_01905"
                     /EC_number="2.7.2.1"
                     /inference="COORDINATES: protein motif:HMM:NF013067.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008776 - acetate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006083 - acetate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0006113 - fermentation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetate/propionate family kinase"
                     /protein_id="HLD40911.1"
                     /translation="MDILVINCGSSSLKYKLYEMPGERLLAKGAVEKIGEKGSPVKSH
                     RQGLEAVLKKVNMVQAVGHRLVHGAEAFREPALIDRKVIREIKSCCRLAPLHNPANLE
                     GILACSDILKGLPQVGVFDTAYHQTLPPKAFIYGLPYSFYKRDKIRRYGFHGTSHEYA
                     AMEASKRLGRDVSKVNLITCHLGNGCSITAIRNGKSVDTSMGFTPLEGLLMGSRCGDI
                     DPAVITYLIEKKKMPAGDVDRLLNQESGLKGISGISN"
     gene            complement(1164..1925)
                     /locus_tag="VJA84_01910"
     CDS             complement(1164..1925)
                     /locus_tag="VJA84_01910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40912.1"
                     /translation="MIQKLQDFNKIVSDFIKMIEEGAEKDVMSKIKITEDIYFLEGIK
                     DSAEQLKRAGDELNESLIKKIKRQFEELTPDEWEDFGKETMAEVDELASSALKVEDAA
                     IPDLEGSAASAVVMQDSLSTAPKDIGAVDLRAMNIITQPMGSFSGLDYSPAALSSSAL
                     EAFDFEQELESLKMMVKSKRIPSPIRDKEAELILDKDDVFFLARVNIYNIRARYQDYK
                     RSLSKRADKEFTNEELSKIKKFFHKIDDKTKHKKK"
     gene            complement(1900..2367)
                     /locus_tag="VJA84_01915"
     CDS             complement(1900..2367)
                     /locus_tag="VJA84_01915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40913.1"
                     /translation="MNRAKRYAALRQVYYSLILARWFKDNYRDGSFKENLTLKEPSLH
                     LKLIDSHDLTNLTSKESWDKITYFSQYKDSFNKGEYNLSETVRTPTGQVIRRYVSGGM
                     EFTSSAIVTGLYQTADKKNPSGVNVVSFQLSIQWQSFCCSRRLGADDTKVARF"
     gene            complement(2453..>2901)
                     /locus_tag="VJA84_01920"
     CDS             complement(2453..>2901)
                     /locus_tag="VJA84_01920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40914.1"
                     /translation="EKGLSNIQVKDKADELMKYFHIGMSLPNDKFWVNLRPDAPEQII
                     DPELEKTDIGKIMLEADLNLKKYTSAWTSPQTKEGREYWDKLYKKAGELFGSENITIP
                     TITRPWIVPGEIIVRESGSGAYIYKAALKVMLEEDYLKSPGHQSPV"
BASE COUNT          726 a          726 c          588 g          861 t
ORIGIN      
        1 attgcttatg ccggaaatgc ctttaagccc gctttcctgg tttaagagcc tgtccacatc
       61 cccagccggc atctttttct tttcaattaa ataagtaatc actgccgggt caatgtcccc
      121 gcaacgactg cccatcaata acccctctaa cggggtaaaa cccatgctgg tgtccacgga
      181 tttgccgttt cttatcgcgg taatactaca gccgttcccc agatggcagg taatcagatt
      241 gactttagaa acatccctgc ccaatctttt ggatgcctcc atagccgcgt attcgtggct
      301 ggtgccgtga aatccgtatc tgcggatttt gtccctctta tagaaactat aaggcaggcc
      361 gtaaataaag gccttaggcg gcaaggtctg atgataagcc gtgtcaaata cccccacctg
      421 cggcaaccct tttaaaatat ccgagcaggc aaggatgcct tccaggttcg ccgggttatg
      481 caaaggggca agcctacagc aggactttat ctcgcggatg accttacggt caataagcgc
      541 aggctctcta aaggcctctg ccccgtgcac caggcggtgg ccgacggctt ggaccatatt
      601 gactttctta aggacagcct ctaatccttg gcgatggctc tttaccggcg agcctttctc
      661 gcctatcttc tcaaccgccc ccttagccaa cagcctctcc ccaggcatct catagagctt
      721 atactttagc gacgaactcc cgcaattaat aaccaagata tccataacag tcattatacc
      781 aaaaataaca aacccgccaa ttaaaacttt ggcgggtttt ggaatcccca ctgtctgcgg
      841 ctggaaacaa gtggaaagag aaaaaaactt gcgggcttat aatagacgtt cgcccgtcct
      901 caacgcttct ttaataaatg gattagtccg ccttttaaat tctttctcct ctataggaaa
      961 agcttcaatt tcagccgcga cctgtttggc aatctgatta ataataacca tttccctgaa
     1021 atcatttttt ccgaacgcgt ttgaaactac acaaaaatct atatcactgc cgggccgcgc
     1081 ccggcccttc gcgtaggaac cgaaaagata tatcgcgtta accgggatat tgtttccagt
     1141 aagagctaat tcatattttt tggctatttt tttttatgtt tagttttgtc atctatttta
     1201 tggaaaaatt tcttgatttt ggacaattct tcattagtaa attctttatc ggcgcgtttc
     1261 gaaagagacc ttttataatc ttgataacgg gctcttatat tataaatatt caccctcgcc
     1321 agaaaaaata catcatcctt atctaggatt aattccgctt ccttgtcccg gataggagaa
     1381 gggattctct tgcttttgac catcattttc aggctctcta attcttgctc aaagtcaaaa
     1441 gcctccagcg ctgatgaact aagcgccgcc ggactatagt caagcccgga aaagcttccc
     1501 ataggctggg taatgatgtt catcgcgcgc aaatccaccg cgcctatatc cttgggagca
     1561 gtagacaatg aatcctgcat caccaccgcc gaggcggcgc tgccttcaag gtcggggata
     1621 gcagcatctt ctaccttgag ggcagaggat gctaattcat ccacttccgc catcgtctct
     1681 ttcccaaaat cttcccattc atctggagtt aattcttcaa actgccgttt aattttctta
     1741 atcaatgatt catttagttc atcccctgcc cgttttaatt gctccgcgct atcctttata
     1801 ccttctagaa aatatatatc ctcagttatc ttgattttag acataacatc tttttcagcg
     1861 ccttcttcta tcatttttat aaaatcagat actattttat taaaatcttg caacttttgt
     1921 atcatcagcg ccgaggcggc gactacagca aaaggattgc cattggatgg atagctgaaa
     1981 agaaactaca ttaacaccag aaggattttt tttgtctgca gtctgataga gacctgttac
     2041 tatagctgaa gatgtaaact ccattcctcc gctgacatac cggcggatga cctggccggt
     2101 aggggtgcgg actgtctccg agagattgta ttcgccttta ttaaaagagt ccttgtattg
     2161 gctaaagtaa gtaattttat cccaactctc tttagaggta agattagtca agtcatgcga
     2221 gtctatgagt ttcaagtgca gggacggttc tttaagagta aggttttctt taaaagaacc
     2281 gtccctgtag ttatctttaa accatctggc taagatcaat gaataataca cctgcctaag
     2341 ggcggcgtat ctcttagccc gattcacctc tttggtcaag ttggggataa tcagttctcg
     2401 gataagctgg gtagagtatc cattcagctc ctttagcctg ggatcgctaa aattatactg
     2461 gtgactggtg ccctggtgac tttaaatagt cttcctccag catcaccttg agcgcggcct
     2521 tgtagatgta agccccggag ccggactccc ggacaataat ctcacccggc actatccagg
     2581 ggcgggtaat ggtaggtatg gtgatattct cgcttccgaa aagttctccc gcctttttat
     2641 agagtttatc ccagtattcc cggccttcct tggtttgtgg cgaggtccag gcagaggtgt
     2701 atttttttag gttaaggtca gcctcaagca ttatcttgcc gatatcggtc ttctccagct
     2761 ccgggtcaat tatctgctcc ggggcatccg gccttaggtt tacccagaac ttatcattgg
     2821 gcaggctcat gccgatatgg aagtatttca tcaactcatc cgccttatcc ttcacctgaa
     2881 tattacttaa gcccttttca t
//
LOCUS       DATDUB010000098         3223 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1577782, whole genome shotgun sequence.
ACCESSION   DATDUB010000098 DATDUB010000000
VERSION     DATDUB010000098.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3223)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3223)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3223
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1577782"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..241)
                     /locus_tag="VJA84_01925"
     CDS             complement(<1..241)
                     /locus_tag="VJA84_01925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40915.1"
                     /translation="MTNSKSEILNSKQTQNSNSPNPKIVLVFEFLILGIAVLISVIAS
                     EAKQSLATGLLRHFVPRNDTLKIESRNSVSVRDNVI"
     gene            complement(228..983)
                     /locus_tag="VJA84_01930"
     CDS             complement(228..983)
                     /locus_tag="VJA84_01930"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40916.1"
                     /translation="MTAQEPEDALSKTIKFRLMAVNPSKTKTQKVNLMTYLPAEVQQR
                     DVLDSGGLELEYDAQKSAYYVFRNGVELAPSEIKKVEVEVRDVWNIRKSSLSEFKGRV
                     ETLIQKLEKTDYYPKAKEIADSIYVTLDDIEKSQDDQTVSPQQHIGIYRQNLLLLERV
                     KEDIARLEKALATAGGPLSPEMLTKTKIKSEEPSKAMTWIVIFSIVIFTGLLAGVLFF
                     TWYRQSRLTKEDLLAAKKAAFPDAGPKKDNDKL"
     gene            complement(1157..1726)
                     /locus_tag="VJA84_01935"
     CDS             complement(1157..1726)
                     /locus_tag="VJA84_01935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40917.1"
                     /translation="MKKSLIITVLFSAAVLFFISLKPNAVQKKKESSAARESKPKTEL
                     ENITKKDIQLKKAKVILESQDWIIYLKPLAAGLTKEEDVLTFSEGRVISRNLFSKGYP
                     QVRYILNFSREGSVSWEAVQESPEAGLASWRGELKDESSMRGFLSLQAKNGSLEDFFF
                     DSGDSNEAIEPRKDDNAASQSFEKKRRSR"
     gene            complement(1970..>3223)
                     /locus_tag="VJA84_01940"
     CDS             complement(1970..>3223)
                     /locus_tag="VJA84_01940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40918.1"
                     /translation="QIKTVYTANVTSAGFFNLAWNTTGLNTSLAYNAINEIDTSLGGK
                     FRTPFSINLAPISSLYNAASLVSSRINMPLTAIQANITSELSNQTSLINTSMTAQQLL
                     ITTKMDSQTALITTKMNEQVGIITNKTTDMQTSVNQTLSSFESRTYKAIDDLQVGANQ
                     TINASLQALNATDKLEYTAKKYSWAVSVSPNPVLVGDAITLTCQGEPSLLPLLTIYSW
                     DNKYIMRDQFLTEKSPGLYEYNFKADSRFTPGKSYTYVVSEQKTGGLVAGSGVVEALS
                     ITTIAGLAAAAPEAERAAKKALDAIKAVEAMLSSGEGTNISLALENLKSSVDSLPDVI
                     AKEGPAAKINKTVEDISSRIRALFGEQGYNISSIFEQILSESPTINDIKLKTGEITAA
                     SDIMLEIMERKLGGREEPFVSVSLF"
BASE COUNT          815 a          799 c          736 g          873 t
ORIGIN      
        1 ttatgacatt gtctctgacg gaaacactat ttcgagattc gatttttaaa gtgtcattgc
       61 gaggcacgaa gtgccgaagc aatcccgtcg caagagattg cttcgcttcg ctcgcaatga
      121 cgctaattag gacagcaatg cccaaaatta aaaactcaaa aactaaaaca atctttggat
      181 ttggagaatt tgagttttga gtttgtttag agtttagtat ttcggattta gagtttgtca
      241 ttatccttct tcggcccggc atccggaaag gccgctttct tagcggctaa aaggtcttcc
      301 ttggtcagcc gggactgacg gtaccaggta aaaaaaagca ccccggccaa aagcccggta
      361 aagatgacaa tactgaagat cacaatccag gtcattgcct tggacggttc ttcggatttg
      421 atcttggtct tggtgagcat ctccggggag agcggccctc cggcggtagc caaggctttt
      481 tccagtctgg cgatatcctc cttaacccgc tcaagcagta agagattctg gcggtaaatt
      541 ccgatgtgct gctgcgggct cacggtctgg tcgtcttgag acttttcaat atcatccagg
      601 gtaacgtata tgctgtcggc gatttccttg gccttggggt aataatcggt tttctccagc
      661 ttttggatca gggtttcaac gcggcccttg aattcagaaa gcgagctttt acggatattc
      721 cagacatccc tgacctccac ctcaaccttc ttgatctccg aaggggcaag ctccaccccg
      781 tttctaaaaa cataataagc ggatttctgg gcgtcatact ccagttccag accgcctgaa
      841 tccaggacat ccctctgctg gacctctgcc ggcagatagg tcatcaggtt aactttctgg
      901 gtcttggtct tggaaggatt gaccgccatc aaccggaatt ttatggtttt gcttaaagca
      961 tcttcaggtt cctgcgcggt caacttaaga gtagaaaata agaatacaaa tgccaacaat
     1021 acaaatgtaa taaatacttt aatattgtca ttgcgagcga agcgaagcaa tcccctcctc
     1081 aagggattgc ttcgtcgtcc gccacgaatc atggcggact cctcgcaatg acaatccaaa
     1141 acttttccca aaaccatcac ctggacctcc ttttcttctc aaagctttga ctggcggcgt
     1201 tatcgtcttt tcgcggctct atcgcttcat tagaatcccc tgaatcaaaa aagaaatcct
     1261 ccaggctccc attcttagcc tggaggctca agaacccccg catagaagac tcatccttta
     1321 actccccccg ccaggatgcc aacccggcct ccgggctttc ctggaccgcc tcccaggaaa
     1381 cacttccctc ccgcgaaaag tttaagatat atctgacctg cggataccct ttagaaaata
     1441 agttccggga aataacccgg ccttcggaaa aggtcaagac atcctcttct tttgttaatc
     1501 cggcggctaa aggcttcaag tagattatcc aatcctggct ctccaggata accttggcct
     1561 ttttcaactg gatgtctttc ttagttatat tctccagttc agtctttggc ttagactctc
     1621 gcgcggcgga cgattctttc ttcttttgga cggcattcgg ctttaggctt ataaagaata
     1681 agaccgcggc gctaaataat accgtaatta taagagattt cttcatttaa tgagcacatg
     1741 acttacggaa caagcgaagc gagtgaacat aagtcactgt gcgaattatc ccgtcgactg
     1801 cgagcggatt tcaaagaaat ccacaaagcg ctttgttgac gggaaactta aaggctggct
     1861 ctttattatg ataaacctgt gtcattgcga ggagcgacag cgacgaagca atctaatttt
     1921 taagattgct tcgcaatgac gctttaatta tgcaaaggta tatacctgct taaaacagcg
     1981 acacggaaac aaacggctct tccctgcccc ctaactttct ttccataatc tccagcataa
     2041 tatcgctggc cgcggttatc tcgccggtct tcaacttgat atcattaata gtcggggatt
     2101 cgcttaatat ctgctcaaag atagaactga tattatatcc ttgttccccg aataaggccc
     2161 gaatccggct ggagatatct tccacagtct tatttatctt ggctgccggg ccttccttgg
     2221 caatcacatc cggcagggaa tccacggaac tttttaagtt ctctaaagcc agggaaatat
     2281 tagtgccttc tccggaagat aacattgcct ctaccgcctt gatcgcgtcc aaggccttct
     2341 tggccgcccg ctcggcttca ggggcggcgg cggcaagacc ggctatagtg gtaatggaaa
     2401 gggcctccac caccccggag ccggccacca accctccggt cttctgctcg ctgaccacat
     2461 aggtgtagga cttgcccggg gtaaaacggg aatccgcctt aaagttgtat tcatataaac
     2521 ctggggactt ttcagtcaag aactgatccc gcataatata cttattgtcc cagctgtaaa
     2581 tggttaagag gggcagtaat gaaggctcgc cttgacaggt caaggttatt gcatccccga
     2641 ctaagaccgg attaggggag acagaaactg cccaggaata cttcttggcc gtatattcaa
     2701 gtttatccgt agcgtttaag gcctgcaaag aggcgttaat cgtctggttg gcgcctacct
     2761 gcaggtcatc aatggcctta taagtccggc tctcaaagct ggagagggtc tgattaactg
     2821 aagtctgcat atccgtagtc ttattggtaa taatacccac ctgctcattc atcttggtgg
     2881 taatcagggc agtctggcta tccatcttag tggtaatcaa cagttgctgg gcagtcatag
     2941 aagtattaat cagactggtc tgattgctca actccgaggt tatattggcc tggattgcgg
     3001 tcaaaggcat atttatccta ctggagacaa gactggcggc attatacaag gaagatatcg
     3061 gagccagatt tatggagaat ggcgtgcgga acttgccgcc taagctggta tctatctcat
     3121 tgatggcgtt ataagccagg ctggtattta aaccggtggt gttccacgcc agattaaaga
     3181 agccggcgct ggtcacattc gcggtataga cagtcttgat ctg
//
LOCUS       DATDUB010000099         2966 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1411770, whole genome shotgun sequence.
ACCESSION   DATDUB010000099 DATDUB010000000
VERSION     DATDUB010000099.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2966)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2966)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2966
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1411770"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(44..769)
                     /locus_tag="VJA84_01945"
     CDS             complement(44..769)
                     /locus_tag="VJA84_01945"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HLD40919.1"
                     /translation="MKTCAIIPALNAAGTIGKVVKEIKELGIDPIVIDDGSNDQTSKV
                     SRENGAIVLKNEVNSGKGASLRKGFARALSERYDYIFTLDADGQHSPVDIPNFLSLLN
                     TKPQADMIIGNRMDSPAGMPLIRKLTNKFMSRVLSAICGQNVPDTQNGFRLIKSSLLE
                     NIELKSRRFEIESELNIKAAAKMALILSVPITSIYQNRQSRINPIADTFRFVKFIILY
                     ILSYTLSNKKKGARYASQITSHE"
     gene            complement(769..1623)
                     /locus_tag="VJA84_01950"
     CDS             complement(769..1623)
                     /locus_tag="VJA84_01950"
                     /inference="COORDINATES: protein motif:HMM:NF015251.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HLD40920.1"
                     /translation="MFSYLLYRIGEGLALCLPSRILYGLAGIISTLQYLFSRQDRDAV
                     RENLKAIFPDINKKLLERYTKGVFINFGLYLANFLRSKKIDLNYLKKHLIIEGLEEVD
                     KALAQKKGLIILSGHIGNWELGGIALGLLGYPINAITLTHKDPRVNQFFNRQREEKGF
                     KAIPLGKAVRGCLEAFSRNEIVCILGDRDFTQGGLVVDFFGRPSLIPKGPAVFFLKNK
                     VPIVMALSLQEDSDKFRLSFSPAIQFQSSGNYEEDLILFTKDYLKRIESSIRRLPWQW
                     AMFRRFWL"
     gene            complement(1596..2735)
                     /locus_tag="VJA84_01955"
     CDS             complement(1596..2735)
                     /locus_tag="VJA84_01955"
                     /inference="COORDINATES: protein motif:HMM:NF018613.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016758 - hexosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HLD40921.1"
                     /translation="MSKFRVLLLYISEVSGHHQAAIAIENALKIINPEVETLNLNAFN
                     YTNPISEKIINRLYMGIIKRTPGIWDYLYDNPSVVQKTLKIKEAIHKHNSPKLKKLFD
                     EFKPNTIVCTQAFPCGMVSDFKKTYNINIPLIGVLTDYAPHSYWLYDNVDYFIAPSQE
                     VKERFIQKGVAPDKIKVYGIPVHPKFSLTHNPRELAGKFNLSVDKPIILAMGGGQGLG
                     PINKIVSAFKKIRIDSQLAVITGNNQKLFRRLKRRAEKSKKKIALYQFINNIDELMEI
                     ATLIITKAGGLTTAEALSKGLPMVIIKPLPGQEEINTTYFLDKGAAIKITNERLLPQF
                     IQDLISNPAMLKGMRQSALSLSRPSSSLDIAKLILELCSATSYTG"
BASE COUNT          691 a          663 c          745 g          867 t
ORIGIN      
        1 gataatgatg accactaaca tcagctcaat cagggtgaac cccttattcg tgacttgtga
       61 tttgtgacgc atatcttgct cctttctttt tgtttgagag agtataggaa agtatatata
      121 atattatgaa ttttacaaac ctaaaagtgt ccgctattgg attaatccgg ctctgccggt
      181 tttggtatat ggaggttatc gggacgctta atattaaggc cattttcgcg gcggccttaa
      241 tattaagttc agactcaatc tcaaagcgcc ggcttttgag ttctatgttc tctaatagtg
      301 agcttttgat caggcggaaa ccgttttggg tgtccgggac attctggccg cagatggcgg
      361 ataaaacccg ggacataaac ttgttagtca gtttccggat aagaggcatt ccggccgggg
      421 aatccatccg gttaccgata atcatatccg cctggggttt agtgttcagt aaacttaaga
      481 aattcgggat atccactggg gaatgttggc cgtcggcgtc aagggtgaat atgtagtcat
      541 acctttcaga tagcgcgcgg gcaaagcctt tgcgcaggct ggcgcccttg ccggagttta
      601 cttcattctt taggactatt gccccgtttt cccgggatac ctttgaggtt tggtcgtttg
      661 agccgtcgtc aatcactatc gggtcaatgc ctaattcttt tatttccttg accactttcc
      721 cgatagtccc tgccgcgtta agcgcgggga taatcgcgca ggtcttcatc agagccagaa
      781 acggcggaac atcgcccatt gccagggaag cctgcggata gagctttcta tccgtttaag
      841 atagtccttg gtaaataaaa tcaggtcttc ttcataattg cccgaagact ggaattggat
      901 tgccgggctg aaggataaac ggaatttatc gctgtcttcc tgtaatgata aggccattac
      961 aatggggact ttattcttca gaaagaacac cgccggccct ttcgggatca ggctagggcg
     1021 gccgaagaag tccaccacca gcccgccctg ggtaaagtcc cggtccccca atatgcagac
     1081 aatctcattg cggctgaatg cctccaggca tccccgaacc gccttgccca agggtatcgc
     1141 cttaaaccct ttctcttctc tctgacggtt aaagaattga ttgactcggg ggtccttatg
     1201 ggtcaaggtt atggcgttta tgggataacc taacagaccc aaggctatac cccctaattc
     1261 ccaattgccg atatgcccgc tcaagataat caggcctttc ttttgggcaa gggccttgtc
     1321 cacttcttcc aatccctcaa taatcaagtg tttctttagg taattaaggt ctatcttttt
     1381 agatcttaag aaattggcta aataaagacc aaagttaatg aatacccctt tagtgtatct
     1441 ttctaagagc tttttgttta tatccggaaa gatggctttc aggttctccc tgaccgcgtc
     1501 ccggtcctgc cgggaaaaca gatattgcag ggtagagata atcccggcca atccgtagag
     1561 aatccggctg ggcaggcaga gggccaggcc ttcgcctatc cggtataaga ggtagctgaa
     1621 cataactcca ggattaattt ggcaatgtct aagcttgagg agggtctgct taagcttaag
     1681 gcggactggc gcattccctt aagcatcgcg ggatttgaga ttaaatcctg gataaattga
     1741 ggcagaagcc gttcgttggt tatttttatg gccgctcctt tatccagaaa ataggtggta
     1801 tttatttctt cttgtccggg caggggcttg ataattacca tcggcagtcc tttactcaag
     1861 gcttcggcag tggtcagccc tccggccttg gtgataatca gggtcgcgat ttccatcaac
     1921 tcgtcaatgt tattgatgaa ttgatacaag gctattttct tcttggattt ttccgctctt
     1981 ctttttagcc tgcggaagag tttttggttg tttccggtga ttaccgccag ctgtgagtct
     2041 atccggattt tcttaaaggc cgagactatt ttgtttatcg ggcctaaacc ctggcctcct
     2101 cccattgcca ggataatcgg tttgtctacg ctcaaattga atttcccggc caattcccgc
     2161 gggttgtgcg tgagggagaa tttaggatgg acgggtatgc cgtaaacctt tattttgtca
     2221 ggggccacgc ctttctggat gaacctttct tttacctctt ggctgggggc gataaaataa
     2281 tccacattat cgtagagcca gtaggaatgc ggggcgtagt cggtcaatac ccctatcagg
     2341 gggatgttga tgttgtaggt ttttttgaaa tcgctaacca tgccgcaggg aaaggcctgg
     2401 gtgcagacta tcgtattggg tttaaactca tcaaagagtt ttttcagctt aggagagttg
     2461 tgcttgtgga tggcctcttt tatcttaagg gtcttttgga ccaccgaggg gttatcatag
     2521 agatagtccc agatgccggg ggtgcgtttg attattccca tatacagccg gttgattatc
     2581 ttttcgctga tgggattggt gtagttaaag gcgtttagat ttaaggtctc aacttccggg
     2641 ttgataatct taagggcatt ttctatggcg attgccgcct ggtggtggcc ggagacttcc
     2701 gagatataaa gcagtaagac cctgaattta gacataggcc aataataaca taaaagttgt
     2761 ccctaatcaa ggcaaaatca gatgggtggt gtagccggac tacggcaggt attccgtgct
     2821 caaacatcct cggcgctttt cttgataatt acattgtgga atggcgcctg cggaactgcg
     2881 cgcggaacac ctgccgcagt ccggcttgcc ccgagcggtg aaattataaa gtttggcgaa
     2941 gtcggaaagg gatagctctt cggccc
//
LOCUS       DATDUB010000100         2201 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_230133, whole genome shotgun sequence.
ACCESSION   DATDUB010000100 DATDUB010000000
VERSION     DATDUB010000100.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2201)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2201)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2201
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_230133"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(297..512)
                     /locus_tag="VJA84_01960"
     CDS             complement(297..512)
                     /locus_tag="VJA84_01960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002757627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40922.1"
                     /translation="MTKRRHTKLVHEGKYVAEIEVEILDTGDGWSPYLSLEDAQKIDE
                     VREALREGALQRATKIARVFNLTPVSV"
     gene            complement(509..712)
                     /locus_tag="VJA84_01965"
     CDS             complement(509..712)
                     /locus_tag="VJA84_01965"
                     /inference="COORDINATES: protein motif:HMM:NF025442.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4258 domain-containing protein"
                     /protein_id="HLD40923.1"
                     /translation="MNNGIIVEDYPAYPKGPCVLVLEKDRETRPIHVVWGIPKGASSP
                     AVIVTAYRPDANMWTDNFTRRQR"
     gene            complement(740..>2201)
                     /gene="ilvD"
                     /locus_tag="VJA84_01970"
     CDS             complement(740..>2201)
                     /gene="ilvD"
                     /locus_tag="VJA84_01970"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017889601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004160 - dihydroxy-acid dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009097 - isoleucine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009099 - valine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HLD40924.1"
                     /translation="GGRPFVFGIPGICDGIAMGHSGMRYSLASRELIADMVESIANAH
                     CLDGLVLLTNCDKITPGMLMAVARLNIPSIVVTAGPMVTGRMAGKRLSLVRDTFEAVA
                     KAKKGQISKAQVEEIEMCACPGSGSCQGLYTANTMSCLTETMGMSLTGCATSMVVLAK
                     KERIAFESGKRAVELVRQDVKPRSIMNKNAFYNAVTVDMALGGSSNTVLHLLAIAHDA
                     GVSLPLSDFDKISKSIPNICSLEPAGNYYMEDLEYAGGIPAVLKRLKERLKNNPTVNG
                     KSIYSIADAAQIVNDDVIRPLNNPYNKEGGIAILYGNLAPGGAVVKQAAVSEKMKVFK
                     GQAVCFDSEEEAMKAILNEKIHKGQVVVIRYEGPSGGPGMREMLSPTSAIVGMGLSDD
                     VALITDGRFSGGTRGPCIGHISPEAQAGGPIAAIQDGDIINIDIPHRKLTLSISDEEL
                     KARLKEWKPIKPRIQSGYLPRYAKLVSSADKGAVLS"
BASE COUNT          552 a          614 c          514 g          521 t
ORIGIN      
        1 ctggaagcag gcggctaagt attccttgac cctctctcca tattttagct aaagtatacc
       61 ataaaaaaag gcaaaatatg ggccaaaaca gggttcttga gaacccgctt cctttgggta
      121 ggtttgtcgt cgggaaacgg aaaaagcggg gtaagaaaag agaaaaaata aacgcaaacg
      181 gcgattaccg ggggataaaa ctgtttcgca ggaataaccg acaataaaac tccgccccgc
      241 catcggcggg gtttggaatc atttatcgct gaaaaatcac cgtttttcag tgataattac
      301 actgatactg gggtaagatt aaatacacgt gcaatcttcg ttgctcgttg aagggctcct
      361 tctcgcaaag cctctcttac ctcatctatc ttttgagcat cttcaagaga aagatacggc
      421 gaccagccat ctccagtatc aagaatctct acctcaattt ccgccacata tttaccttcg
      481 tgtacaagtt ttgtatgccg cctcttggtc atctttgcct cctggtaaaa ttatctgtcc
      541 acatatttgc atccggccta taggctgtga cgattaccgc gggagaagac gcgccttttg
      601 gaatacccca caccacatgg atcggacgag tctctctgtc cttctctaac accagaacac
      661 acggaccttt gggatacgcg gggtaatctt caactataat cccattattc atatcgacta
      721 ttgacccatg atgatttctt taactcaaga ccgcgccctt gtcggcggag ctgactaatt
      781 tggcataacg gggaagatag ccgctttgga tcctgggctt aatcggcttc cactctttaa
      841 gcctggcctt taattcttca tcgcttatgc tgagggtgag cttacggtga gggatatcta
      901 tatttattat atcgccgtcc tggatcgcgg caatcggccc gccggcctgg gcctcgggcg
      961 agatatggcc gatgcagggg ccgcgggtgc ctccggagaa acggccgtcg gtaatcaggg
     1021 ccacatcatc gctcaagccc atccccacaa tcgccgaggt gggagaaagc atctcccgca
     1081 tccccgggcc gccggaaggg ccttcgtagc ggatcaccac tacctgcccc ttatgaatct
     1141 tctcgttaag gatggccttc attgcctctt cctcggagtc aaaacaaacc gcctggccct
     1201 taaagacctt catcttctcc gaaaccgcgg cctgctttac caccgcgccg ccaggggcca
     1261 gattgccgta aagaatagca atcccgcctt ccttattata cggattattc aagggacgaa
     1321 tgacatcgtc attaacaatc tgggccgcgt cggcaatgga atatatggat ttgccgttaa
     1381 ccgtcgggtt attcttaagc ctttctttga gccgttttaa gaccgcgggt atgcctccgg
     1441 cgtattccag gtcctccata taataattcc cggccggctc taaagaacag atgttgggta
     1501 tagacttgga aatcttgtca aaatccgata aaggcaggga aaccccggca tcgtgagcaa
     1561 tagccaaaag atgcaaaaca gtattagacg agccgcccaa ggccatatcc acggtaaccg
     1621 cgttataaaa ggcgttctta ttcataatgg aacgcggctt gacatcctgg cgcaccaact
     1681 ctaccgccct tttgccggac tcaaaggcaa tcctctcttt tttggccagg actaccatac
     1741 tggtggcgca gccggtgagg ctcatcccca tggtttcagt caggcaggac atagtattgg
     1801 cggtataaag cccctggcag gagccgcttc ccgggcaggc acacatctca atctcttcca
     1861 cctgggcctt gctgatctgg cccttcttgg ccttggccac ggcctcaaag gtatcccgga
     1921 ccaaagacag cctcttacca gccatacgac cagtaaccat cggcccggca gtaaccacaa
     1981 tagagggaat gtttaaacgg gccactgcca tcaacattcc gggagtgatc ttatcacaat
     2041 tagttaaaag caccaggccg tcaagacagt gggcattggc aatggactct accatatccg
     2101 cgatcagctc ccgcgaggcc aaggaatagc gcatcccgga gtgccccata gcaatcccgt
     2161 cgcagatgcc cgggatacca aagacaaaag gcctcccccc t
//
LOCUS       DATDUB010000101         3919 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_2233510, whole genome shotgun sequence.
ACCESSION   DATDUB010000101 DATDUB010000000
VERSION     DATDUB010000101.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3919)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3919)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3919
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2233510"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(287..823)
                     /gene="pilO"
                     /locus_tag="VJA84_01975"
     CDS             complement(287..823)
                     /gene="pilO"
                     /locus_tag="VJA84_01975"
                     /inference="COORDINATES: protein motif:HMM:NF016253.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0043107 - type IV pilus-dependent motility
                     [Evidence IEA];
                     GO_process: GO:0043683 - type IV pilus assembly [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type 4a pilus biogenesis protein PilO"
                     /protein_id="HLD40925.1"
                     /translation="MFNIGNLNKREKLILALTVTAAGLRMIYNFAVMPYLNKVNSLDQ
                     EILSLKSRIIKTKALLGKKAEIDQELQDYASSIEDKSLSSQQHSARILMEMERLAAQS
                     KVRISDIKPLPVKEGEYFQELVIQLKIESGIKELADFLYKIRGSKEILNIESLQINIK
                     SSDSALTDALLEIHKILF"
     gene            complement(838..2265)
                     /locus_tag="VJA84_01980"
     CDS             complement(838..2265)
                     /locus_tag="VJA84_01980"
                     /inference="COORDINATES: protein motif:HMM:NF016992.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PilN domain-containing protein"
                     /protein_id="HLD40926.1"
                     /translation="MKTNEHITTGLSITDKAVKFVQAEIRHQAKEVCALEGALIPVKS
                     DEETAKALQKLLADKKPNDLGRLILSIPRNLATIHYVKLPSVKPDEIREMSRLQAAKQ
                     IPYAPEEIVLGHQIIQSSDEGYSDVVLIIVHQGIIAKYLGLLKKHKLEPEEITLDSQG
                     IACWFALQKTPSSETPAVIVDLDSDYTRLDVLYRGTFIYSRAFTLDTSSPAGYKQRLS
                     DEINRSLLAYEKEHIGQNPGKMFFTGASESLAHIDQEFLADFSSYEPQKYPQERSLNL
                     KPNPKVKTSSLSFNSFASLLGITLSPAQHVFNLLPEDIRKKRSQTTSKAELYKTIILS
                     CLIGLALLAGAFLNISLRQGGIDRLNQELRSLSAGSGKMEGLLKKINVIRGQLRQTHC
                     LEILAETADCAGSEINLVSFNYKLNKPLTLKGQAKSLADVFAFVNNLEASAAFKDARL
                     QYSSLRKAQTREIVDFEIVCLLEEE"
     gene            complement(2255..3211)
                     /locus_tag="VJA84_01985"
     CDS             complement(2255..3211)
                     /locus_tag="VJA84_01985"
                     /inference="COORDINATES: protein motif:HMM:NF045433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40927.1"
                     /translation="MIIALWILSMLVLLAISIGRRTYIELRLLKYHISRSQAFHLARA
                     AIERISAEKNIDDNKYDSLNESWSNKSKADGEPLFKDFPLGNGTFTIKYSQAEAEFYG
                     MQDESSKLNINKILTDDKKIDENRKKEFQNLINQALADSEAETMVNNFADWIDNMDDD
                     RETFSNGEIKAKNAPLDRLEELTMIDGFSVEDVNTLSGYITIYGDGAVNINTAPKEVL
                     SSLCCDKNGKPLGDETAEKIITYRRGENGEIKPMESIALLSTSEIISEEEKKMLDSRA
                     VVQSSYYSVNSQAEVNGVKKEISAVVNFSQGESPRYLYWYED"
     gene            complement(3274..3891)
                     /locus_tag="VJA84_01990"
     CDS             complement(3274..3891)
                     /locus_tag="VJA84_01990"
                     /inference="COORDINATES: protein motif:HMM:TIGR02532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HLD40928.1"
                     /translation="MKANKRGFTLLEVLLTVGISALILISTYSSLRSGWLTYNKLNTQ
                     TQSYHNIRNGLNNLSKDLRNSFLFNASDNRAIGFKGTQSEMSFASLIKSKDEKETNYI
                     EPAKIYYKFEDKKLLKAQIKGKEILKSSIEPEYKVFLSDISELKFEYAKEVNPASKEI
                     TWEANYEGKDALPSGVRVSLTKEFKDGRPFSLTQTIKLFQATAAK"
BASE COUNT          919 a          867 c          903 g         1230 t
ORIGIN      
        1 caaagccttg tgccataaaa aaggcgattt ccccgaatcg gaaaaggcct gcaaagaaac
       61 actggccata ccggtatatc ccgacctgac ccaagatgaa aaggaccaca tagtttcttc
      121 tataaaagag tattttaaat aattgtcatt cagactgtgt cacaatgtca tcctgaacga
      181 tagcgaagga tctcgtcttt taaattaccg gcgagattct tcggtcgctc tgctccttca
      241 gaatgacaaa atggtcattt taagagatta tgacgcagtc tgattattaa aataatatct
      301 tgtggatttc aaggagggcg tctgtgagcg cggaatcgct ggatttaatg ttgatctgga
      361 ggctttctat gttaagtatt tctttggagc cccggatctt ataaagaaaa tcggcaagct
      421 cttttatccc ggactctatt ttcaactgga tgaccaattc ctggaaatac tccccttctt
      481 taaccggcag gggcttgata tcgctgatcc tgactttaga ctgcgcggct aatctctcca
      541 tttccatcaa tatcctggcg ctgtgctgct ggctggaaag gcttttatct tctatggatg
      601 aggcataatc ttgaagctcc tggtctattt ccgccttttt gccaagcagg gctttagtct
      661 tgataatcct ggatttcagg ctaaggattt cctggtccag ggagttcacc ttgttaagat
      721 atggcataac cgcgaaatta taaatcatcc gcaatccggc ggcggtaacg gtcagggcca
      781 atattaattt ttctctttta tttagatttc cgatattaaa catttattga cccttaatta
      841 ttcttcctct aacaggcaga ctatttcaaa atccacgatt tcccgggttt gagccttgcg
      901 cagtgatgaa tactggaggc gcgcgtcttt aaaggccgcg gaggcctcta aattattgac
      961 aaaagcgaat acgtcagcca ggctcttggc ctggcctttt aaggtcagag gtttgtttaa
     1021 cttataatta aaggaaacta agttgatttc actgccggcg caatcggcgg tttcagccag
     1081 tatctccagg cagtgcgttt gccgaagctg gccgcggata acattgatct tcttgagcag
     1141 tccttccatt tttccggagc cggcggataa agagcgcagt tcttggttaa gtctatctat
     1201 gcctccttgg cgcagggaga tattgagaaa tgccccggcc aatagcgcca ggccaatcag
     1261 gcaggaaagg attattgttt tatacagttc agccttagag gttgtctggc ttcttttttt
     1321 ccggatatct tccggcagga ggttaaaaac atgctgggcc ggggaaaggg ttattcccaa
     1381 caagctggca aaagaattaa aagataagga tgaggtttta actttaggat ttggttttaa
     1441 gttcaaggag cgttcctggg ggtatttctg gggctcatag gaagaaaagt ctgccaggaa
     1501 ttcctggtct atatgggcca gggattcgga ggcgccggta aaaaacattt tcccgggatt
     1561 ttggccgatg tgttcttttt cataggccag gaggctgcgg tttatttcat cgcttaacct
     1621 ttgtttgtat cctgccggcg atgaggtatc cagggtgaat gcccgggaat agataaaggt
     1681 cccgcggtag agcacatcta aacgggtata gtcggaatcc aggtcaacga tcactgccgg
     1741 ggtttctgat gagggggttt tctggagggc aaaccagcag gcaatacctt gagagtcaag
     1801 ggttatctct tcaggctcaa gtttatgctt cttcagcagg cctaagtatt tggcgattat
     1861 gccttgatgc acgattatca ggaccacatc cgagtagcct tcatcgctgg attggataat
     1921 ttggtggccc aggactattt cttccggggc atagggtatt tgtttggcgg cctgcaggcg
     1981 gctcatttcc cggatctcgt caggctttac tgaaggcagt ttgacataat ggatggtggc
     2041 taagttcctg ggtatggaaa ggattagcct gcccagatca ttgggtttct tatcggccag
     2101 cagtttttgt agggccttgg cggtttcttc atcgctcttc accgggataa gcgcgccctc
     2161 cagggcgcag acttctttag cctgatgccg gatttcagcc tggacgaatt tgaccgcttt
     2221 gtcggtaatg cttaagccgg tagttatatg ttcgttagtc ttcataccaa taaagatagc
     2281 gcggggactc accctggcta aaattgacca ccgcgctaat ctcttttttc actccgttta
     2341 cttcggcttg agaattgacg ctatagtatg agctttgaac aacggctcgg gagtccagca
     2401 tcttcttttc ttcttcgcta attatttcag atgtggaaag gagggcaata ctttccatcg
     2461 gtttaatttc tccgttttct cctctgcggt aggtgataat tttttctgcg gtttcatctc
     2521 ccaacggttt tccattctta tcgcagcata agctggaaag cacctcttta ggcgcggtat
     2581 ttatattgac tgcgccgtcg ccgtaaatag ttatatatcc ggaaagtgta tttacatcct
     2641 ctacgctaaa gccgtcaatc atagtcagtt cttccagcct gtctaaaggc gcgtttttgg
     2701 ccttaatctc tccgttagag aatgtttccc tatcgtcatc catattgtca atccaatccg
     2761 cgaaattatt gaccattgtt tctgcctcgg aatctgccag cgcctggtta atcagatttt
     2821 gaaactcttt ctttcgattt tcgtcaatct ttttgtcatc cgtaagtatc ttattgatat
     2881 tcagcttaga actttcatcc tgcatcccgt agaattcggc ttctgcctgg ctatatttta
     2941 tcgtaaaagt cccgtttccc aaaggaaaat ccttaaatag cggttctccg tccgctttag
     3001 atttattgct ccaggattcg tttaaactgt catatttatt atcatctata tttttttcgg
     3061 cagatatccg ctctattgcc gccctggcca agtgaaaggc ctgggagcgg ctaatgtggt
     3121 atttaagcag tcttaactct atgtatgtcc tcctgccgat gctgatggcc aaaagcacca
     3181 gcatagagag tatccataag gcaataatca aaaccgctcc cgctcttgcg ctcttgtgct
     3241 cttgtgctct tgtgtgccct tgcattatat taatcacttt gcggctgtag cctggaacag
     3301 ctttattgtc tgggtcaggc tgaaaggcct gccgtcttta aattctttgg tcaggctgac
     3361 ccgcaccccg gacggcaagg cgtctttacc ctcatagttg gcctcccagg ttatttcttt
     3421 agaagctgga tttacctctt tggcatattc aaatttcagt tcggagatat ctgaaaggaa
     3481 aaccttatat tcaggctcta ttgacgactt caggatttcc tttcctttta tttgcgcttt
     3541 taacagcttt ttatcctcaa acttatagta tatcttggcc ggttcaatat agtttgtttc
     3601 cttttcatcc ttagatttta ttagagaggc aaaggacatt tcgctttggg tccctttaaa
     3661 gccgatagcg cggttatccg aggcgttaaa cagaaaagag tttcttaagt ctttgctcaa
     3721 gttgtttagg ccgttacgga tattatgata gctttgggtc tgggtattca gtttgttgta
     3781 ggtcagccag ccgctacgca ggctggaata agtggaaata aggatcagcg cggatatccc
     3841 gacggttaat aatacctcaa gcagggtgaa gccccgctta tttgctttca ttttcagtaa
     3901 agagataact gcttatctc
//
LOCUS       DATDUB010000102         5507 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1585218, whole genome shotgun sequence.
ACCESSION   DATDUB010000102 DATDUB010000000
VERSION     DATDUB010000102.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 5507)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5507)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5507
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1585218"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..686
                     /locus_tag="VJA84_01995"
     CDS             <1..686
                     /locus_tag="VJA84_01995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016933436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="PhoH family protein"
                     /protein_id="HLD40929.1"
                     /translation="QEKMDLCFSFKGKTIGPKTAGQYEYIQAIKQYDIVFGVGPAGTG
                     KTYMAMAMAVEALRKGYVRRIILTRPALEAGESLGYLPGTLYEKILPYLRPLYDALYD
                     MMDAQQIEKDIEIGTIEVAPLAYMRGRTLNDAFVILDEAQNCTVEQLKMFLTRLGFDS
                     KTVITGDITQSDLPGGNPSGLTLALDILKVIDGIKIVHFNAKDVVRHELVQRIIAAYE
                     KFSAGKISS"
     gene            652..2103
                     /locus_tag="VJA84_02000"
     CDS             652..2103
                     /locus_tag="VJA84_02000"
                     /inference="COORDINATES: protein motif:HMM:NF019318.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HDIG domain-containing protein"
                     /protein_id="HLD40930.1"
                     /translation="MKNSPQARFLRKITADLSAKVSTVSAFSLIISLLIGLAWFGATD
                     KNAPFAFLILALIFYLRFSGLANKIKINKRQAYLILIFLFSVFIFISHKIIEYRLPAS
                     YIPIAGLAMFITIIFNSLELSLVCCVLASYFSGFILNDSYFFSLLFLVSGISASLLVI
                     RVRRRMQILTAGFITGALQCVLFWLGRGEVSFNSLVPNFLNGAFCAVVVTGILPLLEN
                     LFGLVTNISLLELSDFNHPLLKKMALEAPGTYYHSLIVGNLAEAAAESIGANSLLARI
                     GAYYHDIGKLNNADYFAENQQEADKHSNLSPTMSKMVIINHIKEGVDLARQYRLKPQI
                     IDFINQHHGNSLVYYFYRKALEELEEDDKMLEEGFRYPGPKPASKETAIVLLADSVEA
                     AVRSLPEPQAAKIEEAVHKIINNRFIDRQLDECELTLRDLDKIARIFTHMLSGIYHGR
                     IKYPEFTRKDSQLKKHAPAQSARQPKADKETRA"
     gene            1994..2458
                     /gene="ybeY"
                     /locus_tag="VJA84_02005"
     CDS             1994..2458
                     /gene="ybeY"
                     /locus_tag="VJA84_02005"
                     /inference="COORDINATES: protein motif:HMM:TIGR00043.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HLD40931.1"
                     /translation="MDGSNTRNSPGKTVSLRNTLQRSLPVSQRRIKKLALKALKDLGL
                     ASWRIDFSFVGDRRMRALNREYHRTDLPTDVLAFDYGDRRADIIISLDTAERNSRLYK
                     TKFKDEVLLYVIHGILHLAGYRDLDRGGRKKMFEKQEELLKQARWLSKRPRL"
     gene            2431..3177
                     /gene="recO"
                     /locus_tag="VJA84_02010"
     CDS             2431..3177
                     /gene="recO"
                     /locus_tag="VJA84_02010"
                     /inference="COORDINATES: protein motif:HMM:TIGR00613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecO"
                     /protein_id="HLD40932.1"
                     /translation="MAIEKTEAIVLKTFDFRETSLIVNFFTKEYGRVDGILKGIRKDP
                     RKFASTLEPFSLNEIVFYQSRHSQLHLVSQCDLKDNFDTARSNLKAIAFASYLVDLLR
                     HFMPQEEKNKEIYELAGFALERMDAGADVEKVLRIFVIKFLKLIGFRPRLDGCIVCDK
                     NILGGVYFNVKRGGLICPKCRSSDGYSAEVFGGTVASILHIEQNNWQDALRLGLSANI
                     KDELNRILQSFMEFHLQVKPKSQEFLEILR"
     gene            3272..3490
                     /locus_tag="VJA84_02015"
     CDS             3272..3490
                     /locus_tag="VJA84_02015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007221375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="addiction module protein"
                     /protein_id="HLD40933.1"
                     /translation="MKIADIPKISRLSTAEKILFVEDAWDSISSKERIPMPESHKAEL
                     DSRSAKYKNHGGRPLSLKELQARIEKRK"
     gene            3513..3803
                     /locus_tag="VJA84_02020"
     CDS             3513..3803
                     /locus_tag="VJA84_02020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HLD40934.1"
                     /translation="MPEVEEDAVSMYIWYEEKSKGLGEEFLRAFYASAAEISRTPNLY
                     PKIYKNFHRKLLKRFPYVVYFLIESETVIVYGLFHCARNPYLIQEKIDDRLS"
     gene            3851..4486
                     /locus_tag="VJA84_02025"
     CDS             3851..4486
                     /locus_tag="VJA84_02025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40935.1"
                     /translation="MKDGARGLSPPQRGHPRWQGEGGEKEAMLNNQKKGVVKMANRKL
                     IGIAVVLYIVVGLFISDSMVFGQNIGRPEDSKEEKQSKIGNADGQTIGDMSSTVIYTS
                     CTWAYDYREGKMSVDTENRGQNNPGNSGVLGRIKQSWSCVPKTCVEIGLATTEGWRDL
                     GVIVDEPLAVTCSGGGESCDWGSSVPHLRQSTHPVTLGRSVRGCLKEPQAK"
     gene            4745..5080
                     /locus_tag="VJA84_02030"
     CDS             4745..5080
                     /locus_tag="VJA84_02030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40936.1"
                     /translation="MFISRKGFLRAALAAVTGLWAGGVFGRTKLFAQAETANEQEKMY
                     KNGDIVPQAGRYQCAVCGFIVEYLPKHIEKGVTFGICTVCKSGTDDGPKKSNEEFWKY
                     IGEKKYSFS"
BASE COUNT         1496 a         1176 c         1425 g         1410 t
ORIGIN      
        1 cgcaggagaa aatggattta tgcttttctt tcaagggcaa gactatcggc cctaagaccg
       61 ccggacagta tgagtatatc caggctatca agcagtatga catcgtcttt ggcgtggggc
      121 ctgccgggac cggcaaaacc tatatggcta tggcaatggc ggttgaggcc ttaagaaaag
      181 gttatgtgcg caggattatc ctgacccgcc cggcgcttga ggcgggtgag tccctgggat
      241 atctgccggg cacgctttat gaaaaaatcc ttccttatct gcgtccgctt tacgacgccc
      301 tttacgatat gatggatgcc cagcagattg agaaggacat tgaaataggg accatagagg
      361 ttgccccttt agcctatatg cgcggccgca ccctcaatga cgcctttgtt atcctggatg
      421 aggcccagaa ctgcaccgta gagcagttaa agatgttcct cacccgttta ggttttgact
      481 ccaagaccgt aatcaccggt gacatcactc aaagcgacct ccccgggggc aacccatcgg
      541 gtctgaccct ggccttggat atcctgaaag tcattgacgg gataaagata gtccatttta
      601 acgctaagga tgtagtcagg cacgaactgg tccagaggat aatcgccgcc tatgaaaaat
      661 tctccgcagg caagatttct tcgtaaaata accgcggacc tgtcagctaa ggtctccacg
      721 gtatcggcct tttccctgat aatcagcctg cttatcggcc tggcctggtt tggcgctaca
      781 gacaaaaacg ctccctttgc ctttctgatc ctggccctta tcttttattt gagattctcc
      841 ggcctggcca ataagattaa aataaacaaa aggcaggcct atctaatcct catttttctc
      901 tttagcgtct ttatttttat cagccataag attattgaat accgcctgcc tgccagctat
      961 atccccatcg cggggctggc aatgtttatt accattatct ttaatagctt ggaactttcc
     1021 ttagtttgct gcgttcttgc ctcttatttt tccggattca tcctgaacga ttcatatttt
     1081 ttcagcctgt tattcctggt tagcggaatt agcgcctctt tgctggtaat ccgcgtccgg
     1141 cgcaggatgc agatacttac cgccggtttt atcaccgggg ccctgcagtg tgttttgttt
     1201 tggttaggcc ggggggaggt tagttttaat tctttagtcc ctaatttttt aaacggggcc
     1261 ttttgcgcgg tggtggttac cggcatactg ccgcttttag agaatctctt cggcctggtt
     1321 accaacataa gcctgttgga attatccgat tttaatcatc cgttgcttaa aaaaatggcc
     1381 ctggaggccc ccggcaccta ttatcatagc ctgattgtgg gaaatctggc cgaggccgcc
     1441 gccgagtcaa taggcgcgaa ttcccttctg gcgcggatag gggcgtatta tcatgatatc
     1501 ggcaagctta ataacgccga ttactttgcc gagaaccagc aagaggcgga taagcattct
     1561 aatttaagcc ccacaatgag caagatggtg attatcaacc atattaagga aggggtggat
     1621 ctggccaggc aataccggct taagccgcag ataattgatt ttatcaatca gcaccacggc
     1681 aacagcctgg tatattattt ctatcgcaaa gccctggagg agctggaaga ggacgataag
     1741 atgttggaag agggtttccg ctatcccggg ccaaagccgg cctccaaaga gacggcgata
     1801 gtccttttgg cggattcggt ggaggcggcg gtgcgttccc tgccggagcc ccaggcggcc
     1861 aagattgagg aggcggtgca taagattatc aacaaccgtt tcattgaccg ccagttggat
     1921 gaatgtgaat tgaccctgcg ggacctggat aagattgccc ggattttcac ccatatgctt
     1981 agcgggatat accatggacg gatcaaatac ccggaattca cccggaaaga cagtcagctt
     2041 aagaaacacg ctccagcgca gtctgcccgt cagccaaagg cggataaaga aactcgcgct
     2101 taaagccctt aaggatttag gcttagcttc atggcggata gactttagct ttgtcggtga
     2161 tagaaggatg cgggccttaa accgcgaata tcaccgcact gaccttccta cggatgtcct
     2221 ggcctttgac tacggggaca ggcgcgcgga tataataatc tctttagaca ccgcagaaag
     2281 gaattcccgt ctttataaaa ccaagtttaa agacgaggtc ctgctttatg tgattcacgg
     2341 catcctgcat ctggccggtt accgcgacct ggaccgggga ggccgaaaga agatgtttga
     2401 aaaacaggaa gagcttttga aacaggcacg atggctatcg aaaagaccga ggctatagtc
     2461 ctaaagacct ttgatttccg ggaaaccagc ctgatcgtca atttcttcac taaggaatac
     2521 ggccgggttg acggcatctt aaaaggcatc cgcaaagacc ccagaaaatt cgcctctacc
     2581 ctggagcctt tttccctcaa tgaaatagtt ttctatcaaa gccggcactc ccaactgcac
     2641 ttagtctccc agtgcgacct caaagataat tttgataccg ccagaagtaa tttgaaggcc
     2701 atcgcctttg ccagttactt agttgacctc ttgaggcact ttatgcctca agaagaaaag
     2761 aataaggaga tctatgagct ggccgggttt gccctggagc ggatggacgc gggcgcggat
     2821 gtggaaaagg tattgaggat atttgtgatc aagttcctta agctgatagg tttccgtccc
     2881 cgcttagacg gctgtattgt ctgcgataag aacatcctgg gcggcgtata ttttaatgtc
     2941 aaacggggag ggctaatctg cccgaagtgc cgctcaagcg acggttactc cgcggaggtc
     3001 tttggcggga cagtggcttc catcctgcac attgagcaga ataattggca ggacgccctg
     3061 cgcttaggcc taagcgccaa tattaaggat gagttaaacc gcatcctcca gagttttatg
     3121 gagttccacc tgcaggtcaa acccaaatcc caagaattcc tggagatatt gaggtgaata
     3181 tcggagggtc agacctcaac tttagaagtt agttggcaag atgattattc gtctggaaca
     3241 tatgtgttat aatttaagcg gaggtgagat tatgaaaata gctgatattc ctaagatttc
     3301 tcgtttaagc acagcagaaa aaatcctatt cgttgaggat gcgtgggatt ctatttcttc
     3361 taaagagcgt atccctatgc ctgaatcgca taaggctgaa cttgacagtc gatcagcaaa
     3421 atataaaaac catggcggac gcccgctctc cttaaaagaa ctgcaagcgc ggatagaaaa
     3481 aagaaaataa tatgcggtat ttgttgtcat ttttgcccga agttgaagaa gacgctgttt
     3541 ccatgtatat ttggtatgaa gaaaaatcca aaggcctggg agaggaattc ttaagagcat
     3601 tttatgccag tgccgcggaa atatcccgga cccccaatct ttatcccaag atctataaaa
     3661 acttccatcg taaactcctt aaacgattcc cttatgttgt ctattttctt attgagagtg
     3721 aaaccgttat agtttacggc ttgttccatt gcgccaggaa tccgtattta atacaagaaa
     3781 agattgatga taggttgtct taattatgcg ggcgtaggcg gcggccaagg cgcggtggga
     3841 tggtggagtg atgaaagatg gcgcgcgggg actgtcccca ccacagcggg gccacccgcg
     3901 ctggcaaggt gaagggggtg aaaaagaggc aatgttaaac aaccaaaaga aaggggttgt
     3961 taagatggct aatcgaaagt taatagggat agcggtggtg ttgtatatag ttgtgggatt
     4021 atttatctcg gatagtatgg tttttggtca gaatataggc cggccggaag attctaagga
     4081 agagaaacag tctaagatag gcaatgcaga tggacagact atcggtgata tgagtagtac
     4141 ggtaatctat acttcttgca cttgggccta tgattatagg gaagggaaaa tgtcggtaga
     4201 tacggaaaat cgcggtcaaa acaatccggg aaatagcggt gtcttaggca ggataaaaca
     4261 gagttggagt tgtgtcccta aaacttgcgt agaaatagga cttgcaacaa cagagggttg
     4321 gagggattta ggagttattg ttgatgaacc tttagcggtg acttgttccg gtgggggaga
     4381 gtcatgtgat tggggttcct ctgtgcctca tttacgacag tctacccatc cagttaccct
     4441 aggccgttca gtacgagggt gcctaaaaga accccaggcg aaatgatggg tattgacttg
     4501 agaaaatgac tatagcaaag aaggggtcaa acctcaaaac tccaaagtag ccgttgatgt
     4561 tgaaattgat aaaagatacg gaagataagg ggtcggacct caacattaga aattagttgg
     4621 cagttaaggt ttttcgctgt aatccaaaaa agcgcgaggc cgtaaatgaa aaaaagaatg
     4681 tctttgcagg ggttcatttc atctgctgaa tacgagtaaa atataatatt aaaggagtgt
     4741 gaatatgttt atatcaagaa aagggttttt gagggccgcg cttgcggcgg tgactggact
     4801 ttgggcaggc ggggtattcg gcagaacgaa attattcgcg caggcagaga cagcaaacga
     4861 acaggagaaa atgtataaga atggcgacat tgtccctcaa gccggcagat accagtgcgc
     4921 ggtatgcggg tttatcgtgg aatatctgcc taaacacatt gaaaaaggag tgactttcgg
     4981 gatctgcact gtgtgtaaat ccggcacaga tgacgggcca aaaaaatcca atgaagaatt
     5041 ctggaaatat atcggtgaga agaaatatag ctttagctaa cttcgtgatt aaggggtcgg
     5101 acctcaactt tggaaagtag ttggcagtta aggttttcgc tgtaattcaa aaaagcgcta
     5161 gtgtagtgtc ctataagtct ctttacttat agtctcttac attattgtca ttctgaggcg
     5221 aagccgaaga atttcgtatt ttagatcctt cgtcgctgcc gctcctcagg atgacgaaga
     5281 ttatcaaaag taaagaagcg ctagggacac tacactaggc cataaatgaa aaatagaatg
     5341 tctctgcaag ataaagctga agcggcaaaa cgcgaggtga ggatatgaaa atcacgattg
     5401 tcgggccggg ggcgatgggg tgtttgttgg cggcgtttct ggctaaaggc aaacaggagg
     5461 tctggctctt agataaaaat ccggaacgcg ccgcgaagat tagggag
//
LOCUS       DATDUB010000103         3474 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1077551, whole genome shotgun sequence.
ACCESSION   DATDUB010000103 DATDUB010000000
VERSION     DATDUB010000103.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3474)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3474)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3474
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1077551"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1553)
                     /locus_tag="VJA84_02035"
     CDS             complement(<1..1553)
                     /locus_tag="VJA84_02035"
                     /inference="COORDINATES: protein motif:HMM:NF012652.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase, T2SS/T4P/T4SS family"
                     /protein_id="HLD40937.1"
                     /translation="MENSAYLKLGEMLVKERLVTVDQLEQAMLVQKKEGGRIGEVLVR
                     LGMVSEADYVRVLAKQLNMPYASLGSDLLKPALDQELENLVPREFALKNIVLPLSRNL
                     DSLTCAVYDPFDLTLLDNLKQMTGCQINLVIASRTDILRMADSLYGKSNLLQQAVTRS
                     YSLEDKGGESEVESIDSILSIDRLIASAEDAPVVKLVDLIISQAIDERASDIHIEPYR
                     DKIRLRYRIDGKLYDVAPPAKHLHISLVSRIKILSKLDIAEKRIPQDGAFRVNMGDRL
                     IDLRVSIIPVIFGEKAVLRILDRSRVEIDFPGMGFEPKQLEAFRKGLSSAYGLVFLTG
                     PTGSGKTTTLYAALNEIKDPTKNIVTVEDPIEYSLFGINQLQVKQEIGLSFASALRAF
                     LRQDPDIILVGEVRDAETADICIRSALTGHLVLSTLHTNDASSAISRLMDIGIEPYLL
                     VPSLLVVVAQRLVRRLCPDCKEAYEPLPEQISRFNLRAELIYRPKGCPNCNQTGYLGR
                     MLIAEVMTI"
     gene            complement(1567..2985)
                     /locus_tag="VJA84_02040"
     CDS             complement(1567..2985)
                     /locus_tag="VJA84_02040"
                     /inference="COORDINATES: protein motif:HMM:NF012485.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="secretin N-terminal domain-containing protein"
                     /protein_id="HLD40938.1"
                     /translation="MGHKSGNLSAGYQVDYLQQDELLEDKMDALISMDLKGVSLMEVL
                     KILSLQSGLNFIASEAVAERKITLYLDNITVKDAMDEIFAANNLTYEFKPVKNIFIVK
                     DWGSPALETDTRVYPLKYVSVSNARTGALLGGIKDALTAMLSPKGKIIEDPLTNSLII
                     TDMPSKFAAIEKVIKKLDVLIPQVMIEAEIMDVDKSDVDKLGFKFSGENWLKYTGPNF
                     GSVFPLTGSTLKDGLAGHATGGQAQAKWDMSGLTFAFDFLQSRSNTKFLARPTIFVLN
                     NETAELKLSADEVVGSVTVTQGQGTASSSTTSAERVQTGVSLKVTPQVSLATGEITLV
                     LEPSVKEAITGLTVGSQTTKDIEERSMKSVIRIKDGSTVLLGGLIRNKSTLEKTRVPF
                     LGSLPVVGMLFRHKADGPRKDREIVVFITPWIVRNSSDIAQGKRKFIKKVIRELNPED
                     TFDNSEKDEMVSQALERYDRGN"
     gene            complement(3146..>3474)
                     /locus_tag="VJA84_02045"
     CDS             complement(3146..>3474)
                     /locus_tag="VJA84_02045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40939.1"
                     /translation="GLRSPFKRQFPEAAPLVNPQDKAKPKAKDKAKKITPPPQIVLEG
                     IIAGREAAYAIIAGKVFRLGDKVGDALITGITKEGVEVLFDEQKLSYPAPSRALAVNR
                     EKKDEN"
BASE COUNT          837 a          954 c          824 g          859 t
ORIGIN      
        1 tctatggtca ttacctcggc tatcagcatc cggcccaggt atccggtttg attgcaatta
       61 ggacatcctt tggggcgata aatcagctcg gcgcgcagat taaacctgct gatctgctcc
      121 ggcaggggtt cataggcctc cttgcagtcc gggcaaagcc tgcgcactaa ccgctgggcg
      181 actacaacca aaagagacgg gacaagcaga tacggctcta tgcctatatc cataagccgg
      241 ctaatcgccg aggacgcgtc attggtatgc agggtggaaa gcaccaggtg tccggtcagc
      301 gccgaacgga tacagatatc cgcggtctcc gcgtccctaa cctctcccac caggatgatg
      361 tccgggtcct gccttaagaa cgcgcgcagt gcgctggcaa aactaagccc tatctcctgc
      421 tttacctgca attggttaat cccaaataaa gagtattcaa tcgggtcctc aacggtaact
      481 atatttttgg tgggatcttt tatctcgttc agcgcggcat aaagggtggt ggtcttgccg
      541 cttccggtgg ggccagtaag aaagaccagg ccgtaagcag aactcaagcc tttacgaaag
      601 gcctctaatt gttttggctc aaaacccatg cccggaaaat caatctctac ccgggaacga
      661 tccaatatgc gcaagaccgc cttctccccg aaaatcacag ggataataga aacccgaagg
      721 tctattaacc ggtcgcccat attgaccctg aaagctccgt cctggggaat ccgtttctcg
      781 gcaatgtcta acttggataa aatctttatc cgggagacaa gggagatatg cagatgctta
      841 gccggcggag caacgtcata gagctttccg tcaatacggt agcgcaggcg gattttgtcc
      901 cggtaaggct caatatgaat gtccgaagcc ctctcgtcaa tggcctggct gataatcagg
      961 tcaaccagct ttaccaccgg ggcatcttcg gcgctggcga tcagacggtc aatgctcaag
     1021 atggaatcta tgctctcaac ttcggattcc ccgcctttgt cttccaggga ataagaacgg
     1081 gtgactgcct gctggagcag attagatttg ccgtaaagtg aatccgccat ccgcaggata
     1141 tcggtccggc tggcgataac taagtttatc tgacaacctg tcatctgctt aagattatcc
     1201 aaaagagtaa gatcaaaagg atcgtatacc gcgcaggtaa gagagtccag attccgggat
     1261 agaggcagaa caatattttt aagagcgaat tccctgggga caagattctc cagttcctga
     1321 tccagcgccg gcttaagtaa atccgacccc aaagaggcat atggcatatt taactgcttg
     1381 gccagcaccc tgacatagtc ggcctcgctg accatcccca gccggaccag gacttcgccg
     1441 atgcggccgc cttctttttt ttgaaccagc atggcctgct ctaactggtc cacggtaacc
     1501 agccgttcct tgaccagcat ctcgcctaat ttaaggtaag cggaattttc catctcttat
     1561 catcgctcaa ttcccgcggt cataacgttc cagggcctgg ctgaccatct catccttttc
     1621 agaattatca aaggtatcct ccggattaag ctctctaatg actttcttaa tgaattttcg
     1681 cttgccctgg gctatatcgg agctatttct gacaatccag ggggtaataa aaactacgat
     1741 ttcccggtct ttgcgcgggc cgtcggcctt gtgccggaaa agcatcccca ccaccggcag
     1801 actgcccaga aaggggacac gggtcttttc cagggttgat ttattccgga ttaaaccacc
     1861 aagcaggacg gttgagccgt ccttgatcct gatcacgctt ttcatgctcc gctcttcaat
     1921 atccttggtg gtctgactgc ccacggtaag cccggtaatc gcctctttta ccgatggctc
     1981 aagcaccagg gtaatctccc cggtagccag gcttacctgg ggggtgacct tcaggctgac
     2041 cccggtctgg accctttcag cggaggtagt ggaactggag gccgttccct ggccttgagt
     2101 caccgttacc gaacccacca cctcatccgc ggagagcttt aattcagcgg tctcattatt
     2161 taagacaaat atcgtcggcc tggccagaaa tttagtattg gaacgggact gcaggaaatc
     2221 aaaggcaaag gtcaggccgc tcatatccca ttttgcctgt gcttgacctc cggtagcgtg
     2281 tccggcaagc ccatctttca gggtagaccc ggtcaaagga aagaccgagc cgaaattcgg
     2341 cccggtatac ttaagccaat tctccccgga gaatttaaaa cccagtttat ccacatccga
     2401 cttatccaca tccataatct cggcctcaat cattacctgg gggataagga catccagctt
     2461 cttaatcacc ttctctatag ccgcgaattt actgggcata tccgtaataa tcaggctgtt
     2521 ggtcaggggg tcctcaatta tcttgccttt tgggctaagc atcgcggtaa gggcgtcctt
     2581 tatccctccc aggagggccc cggtcctggc attacttacc gagacatatt taagcgggta
     2641 gacccgggta tccgtctcca aggccggact gccccagtct ttgacgataa agatattttt
     2701 taccggctta aactcatagg tcaggttatt ggcagcaaat atctcatcca tagcgtcttt
     2761 aaccgtgata ttatccagat aaagggtaat cttacgctcg gccaccgcct ccgaggcgat
     2821 aaaattcaag cccgactgca gggataatat tttcaagacc tccatcaagg aaacgccctt
     2881 taaatccata ctaatcaggg cgtccatttt atcctccagc aattcatcct gctggagata
     2941 atcaacctga tatccggcgg atagatttcc ggatttatgc cccattatca aagcaaatac
     3001 gataaaaaca cttatacccc ttattaggcc tgcggcaggt gttccgcgcg cagttccgca
     3061 ggcgccattc cataatgtag ttattaagaa aagcgccgag gatgtttgag cacggaatac
     3121 ctgacgcagg cctgagggtg tccgcctaat tttcatcttt tttctcccgg ttaactgcca
     3181 atgccctgga tggcgctgga taggataact tttgctcatc aaataaaacc tccacccctt
     3241 ctttggttat cccggtaatc aaggcatccc caaccttatc tcccaggcga aaaaccttgc
     3301 ccgcgattat ggcgtaggcg gcctcacggc cggcaataat cccctccaac acaatctgcg
     3361 ggggaggagt tattttcttt gccttatcct tggctttagg cttggcctta tcctggggat
     3421 tgactaaagg cgccgcttca ggaaactgcc ttttaaaggg gctgcgcagg ccgg
//
LOCUS       DATDUB010000104         3042 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1895765, whole genome shotgun sequence.
ACCESSION   DATDUB010000104 DATDUB010000000
VERSION     DATDUB010000104.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3042)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3042)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3042
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1895765"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(116..1372)
                     /gene="ahcY"
                     /locus_tag="VJA84_02050"
     CDS             complement(116..1372)
                     /gene="ahcY"
                     /locus_tag="VJA84_02050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013537999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004013 - adenosylhomocysteinase activity
                     [Evidence IEA];
                     GO_process: GO:0006730 - one-carbon metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylhomocysteinase"
                     /protein_id="HLD40940.1"
                     /translation="MDYDIKDIKLAGKGRLRIEWAATNMPVLGLIKSRFAKERPLKGL
                     RVVACLHVTTETGVLMDVLKTGGAEVRVCASNPLSTQDDVAASLVNDFKIETFSIKGE
                     DTRVYYQHINSALDIKPNITMDDGADLVSTVNKSRRDLITGIIGGTEETTTGVIRLRA
                     MQKDGKLPYPIIAVNDAQTKHMFDNRYGTGQSTIDGIVRSTNMLIAGCSFVVAGYGWC
                     GKGVAMRARGMGARVIVVEVDPLKALEATMDGYEVMTIAKAAKIGDVFLTTTGDISVI
                     RKEHFKAMKDGAIVANSGHFNVEIDIPELEGMSKKKRETRGFVTEYTLSDGRRINLLG
                     EGRLINLAAAEGHPASVMDMSFANQALSAELLAKKYKELEKKVYSVPQDIDEDIARLK
                     LDSMGIKIDKLTPKQKEYLSSWEEGT"
     gene            complement(1519..2688)
                     /gene="metK"
                     /locus_tag="VJA84_02055"
     CDS             complement(1519..2688)
                     /gene="metK"
                     /locus_tag="VJA84_02055"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015864870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004478 - methionine adenosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006556 - S-adenosylmethionine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HLD40941.1"
                     /translation="MEKKRFLFTSESVGEGHPDKVCDQISDGVLDCVLKQDPYGRVAC
                     ETYVTMGLLIVGGEITTTGFVDVHNLTRDILKEIGYDHPKYGFDYHTCAIINTIHTQS
                     PDIAQGVDSGGAGDQGLMVGYACKETPELMPLPIMLAHRLVKKTADVRRAKTLKYLGP
                     DCKSQVTVEYVDGHPKRVDSVVIACQHTEDILDASGLQITKKSRQEIIDIVVKPTVKQ
                     YIDKDTKYYINQTGKFVVGGPQSDTGMTGRKIVVDTYGGMVACGGGAFSGKDPTKVDR
                     SAAYMARYVAKNIVASGIADKCLLHLAYVIGKAEPLSIMVDTYGTGKISDDAIIKLIN
                     SNFDLTPKGMIKNLDLLRPIYRKTACYGHFGRTEAEFSWEQTDKAAELKKQAARL"
     gene            complement(2649..>3042)
                     /locus_tag="VJA84_02060"
     CDS             complement(2649..>3042)
                     /locus_tag="VJA84_02060"
                     /inference="COORDINATES: protein motif:HMM:NF012695.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="sugar phosphate nucleotidyltransferase"
                     /protein_id="HLD40942.1"
                     /translation="IGAYDVGEKSQASRYGVVELGGGSKIISFAEKPKVPKSTLAATC
                     LYYIPKEKLGYFKEYVQDSRNERDTSGSFIKWLVKQEEVGAFVFKKRWFDIGDPLIYQ
                     EADKVFGNINKESGKRWRRKGFCSLRSR"
BASE COUNT          704 a          886 c          612 g          840 t
ORIGIN      
        1 aacagccagc caacggccca aagcataatt ttacatttca tatttacccc tccttgtcat
       61 ccgctttaac ttttgccttc ttacttttgc cttttgcctt ttaacttttg cctttttatg
      121 ttccctcttc ccaactggaa agatactctt tttgcttagg ggttaattta tctatcttta
      181 tccccataga atccagcttc agccgggcga tatcctcatc tatatcctgc ggaacggaat
      241 aaaccttttt ctccaattcc ttatacttct tagccagtaa ttccgcggac agggcctgat
      301 tggcaaaaga catatccata acgctggccg gatgcccttc agccgcggcc agattaatca
      361 aacggccttc ccctaaaagg ttaatccgtc tgccgtcgct taaggtatac tcggtgacaa
      421 aaccgcgggt ctcccttttc ttcttgctca tcccctctaa ttccgggata tctatctcca
      481 cgttaaagtg cccggaatta gccacgatcg ccccgtcttt cattgcctta aaatgctcct
      541 tgcggataac gctgatgtct ccggtagtgg ttaaaaagac atccccgatc ttggccgctt
      601 tggcgatggt catcacctca tagccgtcca tagtcgcctc taaggccttt aaggggtcaa
      661 cctccaccac aatcacccgc gcccccattc cccgggcccg cattgccacg cctttgccgc
      721 accagccgta tccagcgact acaaaactgc atccggcaat caacatattg gtggagcgga
      781 ctatcccgtc tatggttgac tggccggtgc cgtagcggtt atcaaacata tgcttggtct
      841 gggcgtcgtt taccgctatt atcggatacg gaagcttacc gtctttctgc atcgccctaa
      901 gacgaatcac cccggtggta gtctcctcgg tcccgccgat tatcccggtg atcaggtccc
      961 ggcggctttt attcacggta gaaaccaggt ctgccccgtc atccatagtg atattcggct
     1021 ttatatccag ggcgctgttg atatgctgat aatatacccg ggtatcctct cccttaatgg
     1081 aaaaggtctc tatcttgaaa tcattgacca aagaggccgc cacatcatcc tgggtggaca
     1141 acggattaga ggcgcagacc cgcacctctg ccccgccggt ctttaagaca tccatcaaga
     1201 ccccggtctc ggtagtcacg tgcagacagg ccaccaccct taaacctttt aaaggccttt
     1261 ccttggcaaa ccggctcttg atcaagccca ataccggcat attagtcgcc gcccactcta
     1321 tgcgcagcct gcccttgccg gctaatttta tatccttgat atcgtagtcc ataaaaaaac
     1381 tcctttttta actaaaaatc ctaagcccta aaccctaaac tctaaacaaa ctccaaagct
     1441 aaaacacaaa attcaagact tttgtttgtg atttatggct ttgagcttgt ttaggattta
     1501 gagcttagga tttagagttt ataatctggc cgcctgtttc tttaactccg cggctttatc
     1561 ggtctgctcc cagctgaact cggcttcagt ccggccaaaa tgcccgtaac aggcagtctt
     1621 tctgtatatc ggacgcagca gatccagatt cttgatcatc cctttggggg tcaggtcaaa
     1681 attgctgttg atcagcttga ttatggcatc atcggaaatc tttccggtac cataggtatc
     1741 caccataatt gacaacggct cggcctttcc gattacatag gccaaatgga gcaggcactt
     1801 atcggcaatt cctgaagcca cgatattctt ggctacatag cgggccatat aagcggcaga
     1861 acggtcaacc ttggtcgggt ccttgccgga aaaagcgccg cctccacagg ctaccatccc
     1921 gccgtaggta tctaccacaa tctttcttcc ggtcatcccg gtgtccgatt gcggcccgcc
     1981 aaccacgaat ttaccggttt gattgatata atatttggta tccttatcaa tatactgttt
     2041 aactgtcggc ttgactacta tatcaataat ctcctgccgg gactttttgg tgatctgcag
     2101 gcctgaagca tccaggatat cctcggtatg ctgacaggcg ataaccactg aatccaccct
     2161 tttaggatgg ccgtcaacat attccaccgt aacctggctt ttgcagtccg ggcctaagta
     2221 tttcagggtc ttggcccttc tgacatcggc agtcttttta actaatctgt gcgccagcat
     2281 aatgggaaga ggcatcagct ccggggtctc tttgcaggca tagccaacca taagcccctg
     2341 gtctccggcc cctccggaat ccaccccttg agcgatgtcc ggggactggg tgtgtatggt
     2401 attgataatc gcgcaggtat gataatcaaa accgtacttg ggatggtcgt agcctatctc
     2461 ctttaatatg tcccgggtaa ggttatgcac atccacaaat ccggtagtgg taatttcccc
     2521 gcccacaatc aaaagcccca tagtcacata ggtctcgcag gccactcttc cataagggtc
     2581 ctgcttcaac acgcagtcta aaaccccgtc ggatatctgg tcgcagacct tatccggatg
     2641 cccctcgcct accgactccg aagtgaacaa aaaccttttc ttctccatct tttcccgctc
     2701 tccttattta tattgccaaa caccttatcc gcctcctggt aaataagcgg atctccgata
     2761 tcaaaccagc gcttcttgaa gacaaaagcg cccacctcct cttgcttaac cagccactta
     2821 atgaaactgc cgctggtatc gcgctcattc cttgaatcct gaacatactc cttaaaatat
     2881 cccaattttt ccttaggtat ataataaaga caggtcgccg ccagggttga cttagggacc
     2941 ttgggttttt cggcaaagct tattatttta ctccccccgc ccaattccac taccccgtat
     3001 ctggaggcct gacttttctc accgacatca tacgccccga tg
//
LOCUS       DATDUB010000105         5088 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1080473, whole genome shotgun sequence.
ACCESSION   DATDUB010000105 DATDUB010000000
VERSION     DATDUB010000105.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 5088)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5088)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5088
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1080473"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            152..1000
                     /locus_tag="VJA84_02065"
     CDS             152..1000
                     /locus_tag="VJA84_02065"
                     /inference="COORDINATES: protein motif:HMM:NF014043.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0110001 - toxin-antitoxin complex
                     [Evidence IEA];
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HepT-like ribonuclease domain-containing
                     protein"
                     /protein_id="HLD40943.1"
                     /translation="MDAIIEGKIDSLKDYFSGRQDVSMAFLFGSYVNDRQTSESDVDI
                     AVYFKPKTAALEWEESGEWGGEDEIWSDVERIIGIKTDLVVLNRAPAGLTYSVLQNGL
                     PLVVKNESLRLRLFLAVSSAAEYFRDFVEDFWRIKQRSRSISDTDRERLIQIVDFLGA
                     ELSEYPKFSSLNQKDYGSNPDLRRNVERWVENIVNASIDAAKILLASERSRIPRTYRE
                     ILEELSLLSGFDAETAKMLGRFAKLRNILAHEYIDIRFNQIQAFIRDSGPAYKTLLDF
                     VKKILC"
     gene            1046..1825
                     /locus_tag="VJA84_02070"
     CDS             1046..1825
                     /locus_tag="VJA84_02070"
                     /inference="COORDINATES: protein motif:HMM:NF013245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HLD40944.1"
                     /translation="MFSSIKDIIKYRALLWALVVRGFKAKYKNSFLGILWSLLNPLFN
                     VLIFSFIFTAILKVGIKDYPLYLLCVIFPWNFFNSALTNSVVSIVEDSSFVKNAHFPL
                     ETVPLAVSAVNFVNFLIDLAALLVFLAFLGRLPQGALWIYIPVIAFMEFILVSALSVF
                     FAGMFVLFRDLNFILNFFLRLFFYFVPVVYTMGLVPRQWHFAYLLNPLAVIIDGFARI
                     FFFHTAPDPAALGLACFESGVIFIFCFWAFNKMRRYIPERL"
     gene            1834..2574
                     /locus_tag="VJA84_02075"
     CDS             1834..2574
                     /locus_tag="VJA84_02075"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HLD40945.1"
                     /translation="MEMLKAENISKKFRIFHQPPLTLQKIVYNLFHRGGLYQELWALK
                     EVSLSLRRGEALGLIGPNGSGKTTLLRVLANIYFPDSGRVYFKGRLAASLELGSGFLL
                     EFTGIENLYLHGAIFGLSRRQIKAKIPAIAEFSELRDFLDVPLRQYSFGMRLRLGFAF
                     MVNIEPDILLIDESLAVGDLAFRQKCFVRIEEMKKKGTSFILVSHNLEEIERLSDRVV
                     FMDKGKIKTMGPAKEVLRQYKESYAHRD"
     gene            2558..3700
                     /locus_tag="VJA84_02080"
     CDS             2558..3700
                     /locus_tag="VJA84_02080"
                     /inference="COORDINATES: protein motif:HMM:NF024831.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 1 protein"
                     /protein_id="HLD40946.1"
                     /translation="MRIGIDIRSLQNDSQLRGIGTYTRSLIQALLSVDEENEYVFFAF
                     CNRPLPDLCQEAAGKKARVSRLTWRKKRFVWLSGQVLFPYAAKKERLDVFYSPEYIVP
                     VLGRVKKTITVHDFINIEYPLYRKRSGALRRLYFYLKDKTLHRADRIISVSRYTKEKI
                     RQLCGIDESRISVIYEAAQDCFRPLSDRGLFSRVEKKYKIEGRFILYVGAIDYHKNID
                     GLIKAFSRIKDNSAALLLAGVKNDPGYFEFIKRLIEKLNLKRRIFLLGYVSQEDLAGL
                     YNMALAVISVSFCEGFGLPVIEAMACARPVIASGNTSMAEIAGDCGILVDPYNLEEIT
                     AAMDSLLSDECLRNALAEKGFIRSKEFSWEKAAREMIGVWEELVGH"
     gene            4067..4984
                     /locus_tag="VJA84_02085"
     CDS             4067..4984
                     /locus_tag="VJA84_02085"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HLD40947.1"
                     /translation="MLISIVILSWNGLDLLKECLPSVVRAVGVYGGECEVLVIDNGSS
                     DGSAGYVRENLPSLNILSLAENFSFTKAMNKGIAAARGEVVIALNNDVIVESDFIAPL
                     ISHFQQAKDIFAVGAKMFFWDRKTLNFGRAIGDFRYGFFRRVICDSDSAVNSLYACAG
                     GMALDRDKFLKLGGLDEDYEVYWEDLDLCYRAWRRAWRTIYEPRSIIYHKFHGTNLSK
                     YKQSGIERLSGENYSLFVLKNILDKGLFFRHILFTPLLMLLVCLKGKPAFAQGMLRAF
                     KRRKIFLNKRALESRNSRMSDREILEMMS"
BASE COUNT         1173 a         1021 c         1397 g         1497 t
ORIGIN      
        1 atgacattgt ctctgacgga aacactattt cgagattcga tttttaaagt gtcattgcga
       61 ggcacgaagt gccgaagcaa tcccgtcgca agagattgct tcgcttcgct cgcaatgacg
      121 ctaattagga cagcaatgat actaaattat tatggatgcg attattgaag gaaagattga
      181 ttcgcttaaa gactattttt ccggacggca ggatgtctca atggcctttc tttttggctc
      241 ttatgttaac gacaggcaga catccgagtc ggatgtggac atagcggtgt attttaagcc
      301 gaaaacagcg gcgctggaat gggaggagtc gggggaatgg ggcggcgagg atgagatctg
      361 gtcggatgtg gaaaggatta tcgggattaa gacagatttg gttgtcttaa accgcgcccc
      421 tgccgggtta acttattctg ttctgcagaa tggtctgccg ctggttgtta agaatgaatc
      481 tctgcgttta aggctttttc tggctgtaag ttcagccgcg gaatatttcc gggattttgt
      541 ggaggatttc tggaggataa agcagcgttc gcggtccatc agcgatactg atagagaacg
      601 gttgattcag attgttgatt ttctgggagc ggaattaagc gagtacccta aattcagctc
      661 tttaaatcag aaagattatg gaagtaatcc ggatttgaga aggaatgttg agcgctgggt
      721 ggaaaatatt gttaatgcct cgatagacgc ggccaagata ctcttggctt cggaaaggag
      781 ccgtatcccc aggacctatc gggaaatcct ggaggagctt tctttgcttt ccggttttga
      841 cgcggaaacc gctaaaatgc tgggaaggtt cgctaaattg cgcaatatcc tggcccacga
      901 gtatatagat atccgtttta atcaaatcca ggcctttatc cgggattccg ggcctgccta
      961 caagacactg cttgattttg ttaaaaagat tttgtgttag actcgcctta ttttttacgc
     1021 gcatagtaag ccgccttaat aatccgtgtt tagctccata aaggatataa taaaataccg
     1081 cgccttgctt tgggcgctgg tagtccgggg ctttaaggcc aagtataaga attccttctt
     1141 agggattctc tggtcgctct taaaccccct gtttaatgtc ctgatattct cctttatctt
     1201 tacggcgata ttgaaggtag ggataaagga ttaccccctc tatctgctct gcgtaatttt
     1261 cccctggaat ttctttaatt ccgccctgac taacagcgtg gtttccattg tggaagacag
     1321 ctcctttgtc aagaatgccc atttcccttt ggagactgtg cctttggcgg taagcgcggt
     1381 taatttcgtg aacttcctga tagacctggc ggcgcttttg gttttcctgg ccttcctggg
     1441 ccggctgccg caaggcgctc tatggattta tatcccggta atcgctttta tggaatttat
     1501 cttagtcagc gctttatcgg tattcttcgc cgggatgttt gtgcttttta gggaccttaa
     1561 ttttatcctg aatttcttcc tgcggctgtt cttttatttt gttccggtgg tttatactat
     1621 gggattggtc ccccggcaat ggcattttgc ctatttgttg aatcccttag ccgtgattat
     1681 tgacggattc gcccggatat ttttctttca taccgcgcct gacccggccg cccttgggct
     1741 ggcttgtttt gagtccgggg ttatttttat cttttgtttc tgggccttta ataagatgag
     1801 aagatatatc ccggagagat tgtaggcaaa gctatggaaa tgcttaaggc cgagaatatc
     1861 agcaagaaat tccgcatctt tcaccagccg cctttgaccc tgcagaagat agtgtataat
     1921 ctttttcatc gcggagggct ttatcaggag ctttgggcct tgaaagaggt gagcctttcc
     1981 ctgcgtaggg gtgaggccct gggtttgatc gggcctaatg gttcaggcaa gaccaccctc
     2041 ttgcgggtgc tggccaatat ctatttcccc gactctggaa gggtttattt taaaggcagg
     2101 ctggcggcct ctctggaatt aggttcgggt tttctgctgg agtttacggg aatagagaat
     2161 ctctatctgc acggggcgat ctttgggctc tcccgccggc agataaaggc caagattccg
     2221 gccatcgctg aattctcgga attaagggat ttcctggatg tgccgcttcg ccaatattct
     2281 ttcgggatgc gcctgcggct ggggtttgcc tttatggtga acattgagcc ggacatcctg
     2341 ttgattgacg agtctttggc cgtgggggat ttggctttta ggcaaaagtg ttttgttagg
     2401 attgaggaga tgaaaaagaa aggaacatca tttattctgg tttcgcataa cctggaggaa
     2461 atagaaaggc tttccgaccg ggtggttttt atggataagg gaaaaataaa aactatgggc
     2521 ccggcaaaag aggtcctgcg gcaatacaag gaatcttatg cgcatcggga ttgatatccg
     2581 gtctttgcaa aacgacagcc aattgcgcgg cataggcacc tatacccgtt ccttgatcca
     2641 agccctgctt tcggtggatg aggagaatga atatgtgttt tttgcctttt gcaaccggcc
     2701 tttgccggat ttatgccagg aagcggccgg gaaaaaagcc agggtcagcc ggcttacctg
     2761 gcgtaaaaag cgttttgtct ggcttagcgg gcaggtcttg ttcccttacg cggctaagaa
     2821 agaaaggctg gatgtctttt attctccgga gtatatcgtg ccggtgttag gaagggtaaa
     2881 aaaaacgatt accgtgcatg attttatcaa cattgagtat cctttataca gaaaaagaag
     2941 cggggccttg cgccggctct atttttatct taaggataag accctgcata gagctgatag
     3001 gataatctcg gtttcgcgtt atactaaaga gaaaataaga cagttgtgcg gaattgatga
     3061 gagccggata tccgtgatct atgaagcggc gcaggattgt tttcgtccgc ttagtgaccg
     3121 cggtttattc tcgcgggtgg agaagaaata taaaatagag gggagattca tactttacgt
     3181 tggggccata gattaccata agaatataga cggtttgatt aaggcctttt cccggataaa
     3241 agataattcc gcggccctgc tgctggcagg ggtgaagaat gacccgggtt attttgagtt
     3301 tataaagcgg cttattgaaa agttaaatct aaaaaggcgg atttttcttt tagggtatgt
     3361 ctcgcaggag gatttagccg gcctttataa tatggcgctg gccgtgattt ccgtgtcttt
     3421 ctgcgaaggc tttggcctgc cggtgattga ggcaatggcc tgtgccaggc cggtgattgc
     3481 ctccgggaat acctcaatgg cggagatagc cggtgactgc gggattttgg tggatcccta
     3541 taaccttgaa gagattaccg cggctatgga tagccttctt tctgacgaat gtttaagaaa
     3601 tgccctcgcc gaaaaggggt ttatccgttc taaggagttt agctgggaaa aggcggcccg
     3661 ggagatgatt ggggtgtggg aggagttggt ggggcattga tgaatttggc tatttttctc
     3721 gctcaagtcg attttgcccc gcctgcggcg acttgagcgg gtaaaatggg gtctgtccag
     3781 gctatgtttt cgccgggacg ttcggcctgc tcctgcggca ggcctcactc ggcgtaaatt
     3841 tttgcacgcc tcgctccgct cggcggccaa gctgcaaaaa tttccgtacg cccggctcaa
     3901 acataacctg gccacccatt ttacctttgt ttgctgagta ttttgagatt tggttttaga
     3961 ttgtcattgc gaggagtccc gcttcgcggg acgacgaagc aatctccgta tgaaagattg
     4021 cttcgcttcg ctcgcaatga cgctaattgg gagaagcaat gattgaatgt taatcagcat
     4081 agtcatctta agctggaatg ggctggattt attaaaagaa tgtcttcctt cggtagtccg
     4141 ggcagttggg gtttacgggg gggagtgcga ggtcttggtt atagataatg gaagctcgga
     4201 tgggagcgcg gggtatgtca gggaaaattt gccgtcgctg aatatattat ctttggcgga
     4261 gaatttctct tttaccaagg cgatgaataa ggggattgcc gcggcccgcg gcgaggtggt
     4321 gattgccttg aataacgatg tgattgtgga gagcgatttc atcgcgccgt taataagcca
     4381 ttttcaacag gctaaggata tcttcgcggt gggagcgaag atgttttttt gggataggaa
     4441 aaccctgaat tttggccggg ccattggtga ttttaggtat ggattttttc ggcgggtaat
     4501 ttgtgattct gactctgctg ttaatagtct gtatgcctgc gccggaggga tggctttgga
     4561 tagggataaa ttcctcaagc tcggcgggct tgatgaggat tatgaagttt attgggagga
     4621 cctggattta tgctatcggg cctggaggcg ggcctggagg acgatttatg aaccccgctc
     4681 aataatttat cataaatttc acggcactaa tctttccaaa tataagcaaa gcgggattga
     4741 acgcttgagc ggagagaatt attccctgtt tgttttaaag aatatccttg ataagggctt
     4801 gttttttcgg catattcttt ttacgccttt gcttatgctc ttggtatgcc taaaaggaaa
     4861 gcctgccttt gcccaaggga tgctccgggc atttaagaga agaaagatat ttttaaataa
     4921 gcgcgctctt gaaagccgga attcccggat gagcgatagg gagattcttg aaatgatgtc
     4981 gtgaggatga cggactgcgt caggtgttcc gcgcgcagtt ccgcaggcgt cattccacaa
     5041 tgtaattatc cagaaaaacg ccgaggatgt ttgagcgcgg aatacctg
//
LOCUS       DATDUB010000106         3286 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_908292, whole genome shotgun sequence.
ACCESSION   DATDUB010000106 DATDUB010000000
VERSION     DATDUB010000106.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3286)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3286)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3286
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_908292"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..355
                     /locus_tag="VJA84_02090"
     CDS             <1..355
                     /locus_tag="VJA84_02090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008526674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016151 - nickel cation binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="nickel-dependent hydrogenase large subunit"
                     /protein_id="HLD40948.1"
                     /translation="LKNGLDEKKIVVSSWPKRSEIGKIKYKPNTGIACVEVPRGSLFH
                     EYAIDDSGHITYANCVIPTNQNMGNLEEDMRQLVPQLLGKKTQEEITLDLEMLARSYD
                     PCISCSTHLLDVKFN"
     gene            414..848
                     /locus_tag="VJA84_02095"
     CDS             414..848
                     /locus_tag="VJA84_02095"
                     /inference="COORDINATES: protein motif:HMM:TIGR00072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation protease"
                     /protein_id="HLD40949.1"
                     /translation="MSANKIAIIGLGNTLRKDDGIGIIVLEVLIKSHNQPGMDYLNFG
                     IAGFDLIHRLEGYAAVLLIDGIDAGLKAGELKISGIEKLDYDLKDTVSSTHEFNLKNL
                     FELCKKFNLKTKIYLAGIQVKDVSYGEGLSPELKACLDQILQ"
     gene            complement(816..1079)
                     /locus_tag="VJA84_02100"
     CDS             complement(816..1079)
                     /locus_tag="VJA84_02100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40950.1"
                     /translation="MFQSIANYQRLINQIEAREGMRQLLEDLAEFVIAGSVSDEAISV
                     GIASLTSFARNDTPPSTDRLPGAWEDFVDKTANLLKDLVKARF"
     gene            1119..1499
                     /locus_tag="VJA84_02105"
     CDS             1119..1499
                     /locus_tag="VJA84_02105"
                     /inference="COORDINATES: protein motif:HMM:NF023514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3568 family protein"
                     /protein_id="HLD40951.1"
                     /translation="MVIAVAGSAVGLVLVLSGCAAMLVGAGAAGGYAIGPDYIQGETD
                     KDFSGIYNSALDVVEIMGVIQSKYSSASVGKIRAKVENSSLEISVERLTRHTVRLKVK
                     SRKNLMPNIALAQKVYNNILQHVR"
     gene            1496..2260
                     /locus_tag="VJA84_02110"
     CDS             1496..2260
                     /locus_tag="VJA84_02110"
                     /inference="COORDINATES: protein motif:HMM:NF012774.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermonuclease family protein"
                     /protein_id="HLD40952.1"
                     /translation="MTIFKKTIFFLLAVCLLFGCGQPQSGASFRVKRVIDGDTIELDT
                     GQTVRYLGIDTPETRRREGEKWVYDPDAYAEEAKEFNRGMVEGKSVRLEFDLQRIDKY
                     KRLLAYCFVGADFVNARLLEEGYALLYTSPPNVKYADILVKKQEEARRNNKGLWAEIP
                     LISPKDARKYLNKIVTVEGKVSSVYQSPKVVILNFGRSSFKAVIFKADFSVFLAQGVS
                     LAGYKGRVVRITGKVKEYKDDFEIIVRHPSDIETVE"
     gene            2285..3250
                     /locus_tag="VJA84_02115"
     CDS             2285..3250
                     /locus_tag="VJA84_02115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40953.1"
                     /translation="MVIPIISCLFVLFAAEIIMRLSWRMSGWVERPIYRRSANPYLRY
                     ELVPGALSGNIRVNSDGFRGPDYPQPKPEGVFRIIMLGDSETLSIMLAEREALAAQLE
                     DELNQGGAKPRYEALNFGVEGYNTFQELEQLKIKGLKYDPDLIILNYVLNDPEPGEYY
                     FNKTFLIRHSALARYFTYRIKKALIRRERKKLGIKTEVEHFYYLHQPKYFLRVEKAIQ
                     EMAGIARAGGNKLAVVIFPASSLMAPDFREGYPYSGIHDLVKGIRSDNILFIDLIEEF
                     NRLNLTPQGVSINYIYNESHKNAAALKVSARYLSRMLRSGKIIPE"
BASE COUNT          862 a          731 c          879 g          814 t
ORIGIN      
        1 cctgaagaac ggcctggatg agaaaaagat cgtggtctcc agctggccca aaagaagcga
       61 gatcggcaag atcaaataca agcccaatac cgggattgcc tgcgtggagg tgccccgggg
      121 ctccttattt cacgaatacg ctattgacga cagcggccat attacttatg ccaattgcgt
      181 tattcctact aaccagaata tgggtaattt agaagaggat atgcgtcaac tggtgcccca
      241 gcttttaggc aagaaaaccc aggaagaaat caccctggac ttagagatgc tggcccgctc
      301 ctacgacccc tgcatatcct gctctaccca ccttttggat gtcaagttca actaaggatt
      361 tcattaatgg aatccttagt tgattctgag gcaatgtgcc gaagaatctt ccaatgtcag
      421 ctaataaaat tgctattatc ggtttaggca acaccctaag aaaagacgac ggaatcggga
      481 taatcgtttt agaagtcctg ataaaatcgc ataatcagcc gggcatggat tatcttaatt
      541 tcgggatagc cggctttgat ttaatccatc gccttgaagg atacgccgcg gtcttgctta
      601 ttgacggtat tgatgccggg cttaaggctg gtgagcttaa gataagcggg atagaaaagc
      661 tggattacga tttaaaagac acagtctcat ctacccacga atttaatcta aaaaacctct
      721 ttgaactctg caaaaaattc aacctcaaga ccaaaatcta ccttgccgga atccaggtca
      781 aagatgtctc ctatggcgaa ggccttagcc cggaactaaa agcgtgcctt gaccaaatcc
      841 ttcaataaat tagctgtttt atcaacaaaa tcttcccacg cccctggtaa ccggtcagtg
      901 gacgggggcg tgtcattgcg agcgaacgaa gtgagcgaag caatcccgac ggagattgct
      961 tcgtcgctca cgctccccgc aatgacaaat tccgctaaat cctccaataa ctgacgcatt
     1021 ccctcccttg cttcaatttg attgattagg cgttgataat ttgctatact ctggaacata
     1081 tggctaagaa caacagttgg cggctgatgc gtcaaggtat ggtaattgct gtggcaggat
     1141 cggcggtggg gctggtgttg gtcctgtccg gctgcgccgc gatgcttgtg ggggccgggg
     1201 ctgccggagg atatgccata ggcccggact atatccaggg agagaccgat aaggattttt
     1261 ccgggatcta taactccgcg ctggatgtcg ttgagataat gggagttatt cagtcaaaat
     1321 acagctctgc ctctgtaggt aaaatcaggg ctaaggtgga aaacagcagt ttggagattt
     1381 ccgtagagag attaacccgc cataccgtgc gccttaaggt aaagagccgc aagaatttaa
     1441 tgcccaatat cgccttggcc cagaaggtgt ataacaatat cctccagcat gtcagatgac
     1501 cattttcaaa aaaactattt tctttctgtt agcggtttgc ctgctttttg gctgcggcca
     1561 gccgcagtca ggcgcgagct ttagggtcaa gcgggtgatt gacggtgaca ctattgagct
     1621 ggatacgggt cagactgtgc gctatctggg gattgatacc ccggaaacaa ggaggcgcga
     1681 aggggaaaaa tgggtctatg accccgatgc ctatgccgaa gaggccaagg aatttaaccg
     1741 cgggatggtg gaaggcaaaa gtgtccgtct ggaatttgac ctccagcgga tagataaata
     1801 caagcggctt ctggcttatt gctttgttgg cgctgatttt gtaaatgcca ggcttttaga
     1861 agaaggctat gcccttcttt atacctcgcc cccgaatgtg aaatacgcgg atatcctggt
     1921 gaagaagcag gaggaggcgc gcaggaacaa caaaggattg tgggctgaaa tcccgcttat
     1981 cagcccaaaa gacgcccgga agtatttaaa taagattgtg actgtggagg gaaaggtttc
     2041 ttcggtgtat cagtcgccga aagtggttat ccttaatttc gggcgcagta gctttaaggc
     2101 ggtgatcttt aaggcggatt tctctgtttt tttggcccaa ggggtttctc tggccgggta
     2161 taaaggcagg gtggtgcgga ttaccggaaa agtcaaggaa tacaaggatg attttgaaat
     2221 cattgtccgc catccttcag atatagaaac ggtggaataa atgggcgccg gcggcaggaa
     2281 aaagatggtt atccccataa tttcctgcct ttttgttttg ttcgcggctg aaattataat
     2341 gcgcttgagc tggcggatgt ccggctgggt ggagcggccg atataccgaa gaagcgctaa
     2401 tccttacttg cgctatgaac tggtcccggg ggccctaagc ggcaatatcc gggttaattc
     2461 cgacgggttc cgcggaccgg actatcccca gcccaaaccc gagggggtgt tccggataat
     2521 tatgctgggg gattccgaga ccctgtctat tatgctcgcc gaacgagagg ccttagccgc
     2581 gcaattggag gatgagttga atcagggggg cgccaaaccg cgctatgagg cgcttaactt
     2641 cggggtggaa ggatacaata cctttcagga attagaacag cttaagatta aggggctaaa
     2701 gtatgacccg gatttgatta tcttaaatta tgtcttaaac gacccggagc cgggggagta
     2761 ttattttaac aagacctttc ttattcgtca tagcgccttg gcccgttatt tcacctatcg
     2821 gataaagaag gcgcttatcc gccgggagag aaagaagctg gggataaaga ccgaggtaga
     2881 gcatttctat tatctgcatc agcccaagta tttcctgcgg gtggaaaagg ccatccagga
     2941 gatggccggg attgcccggg caggaggcaa caagctggcg gtggttattt ttccggcctc
     3001 cagcctgatg gcgccggatt tcagggaggg ttacccttat tcagggattc acgacttggt
     3061 caagggcatc cgttcggaca atatcctttt tattgatttg attgaggaat ttaaccgcct
     3121 aaatcttacg cctcaaggcg tatccatcaa ctatatctac aacgaaagcc acaaaaacgc
     3181 cgcggccttg aaagtgtccg ctcgatactt gagccggatg ttaagaagcg gcaagattat
     3241 cccggagtga ggagggagta aaatagggta aaatttcctt gtgagg
//
LOCUS       DATDUB010000107         2356 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1588729, whole genome shotgun sequence.
ACCESSION   DATDUB010000107 DATDUB010000000
VERSION     DATDUB010000107.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2356)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2356)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2356
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1588729"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            222..1121
                     /gene="lptC"
                     /locus_tag="VJA84_02120"
     CDS             222..1121
                     /gene="lptC"
                     /locus_tag="VJA84_02120"
                     /inference="COORDINATES: protein motif:HMM:TIGR04409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015221 - lipopolysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015920 - lipopolysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter periplasmic protein
                     LptC"
                     /protein_id="HLD40954.1"
                     /translation="MAKKIVLILVFLFVFSFALDAAPRKAELKPQEAEPDQQMNDFSL
                     QGLSQGGKKAWEVRGKSADILTDIVKLTSVNADVYGEEENINLVGDKGTYDKSTGKIH
                     LQDNVVITTSGGGKLTTNYLDWDRESKRVSTEDVVNIQRQNIKAVAKGLEGDPDLKKV
                     SLKDDVTVEIQEVLEEAQSDDPLLSSKDPTIVTCDGPLEIDYEKEIAIFNNNVKVDQK
                     EQGVMHADKMEAYFDFKVKKILRIKSIGNVKIVKDGNTSYSDEALYSAADKKMTLTGR
                     PRLVINSQEKLLDTASDNAPSGN"
     gene            1102..1824
                     /gene="lptB"
                     /locus_tag="VJA84_02125"
     CDS             1102..1824
                     /gene="lptB"
                     /locus_tag="VJA84_02125"
                     /EC_number="7.5.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013707035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0015221 - lipopolysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015920 - lipopolysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter ATP-binding protein"
                     /protein_id="HLD40955.1"
                     /translation="MHLLETKGLEKAYNGRSVVCGVDLIVKRGEIVGLLGPNGAGKTT
                     TFYMVVGIVAPEAGKIIFDNEDITKLPIHERSRLGIGYLPQETSVFRKLSVEENIMAV
                     LETLPLSPSQRSKRLGELLNELNIAHLAKNKAYTLSGGEARRLEITRALVTRPSFMLL
                     DEPFSGIDPIVVSEAQAIIKDLRAKGLGVLITDHNVRETLSVTDRAYLISEGKILISG
                     SAQELIDNPQARSLYLGEKFRM"
     gene            1977..>2356
                     /locus_tag="VJA84_02130"
     CDS             1977..>2356
                     /locus_tag="VJA84_02130"
                     /inference="COORDINATES: protein motif:HMM:NF017508.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor family protein"
                     /protein_id="HLD40956.1"
                     /translation="MKVETKKLESNKIQLDIQVPAETVKQKFNEVYERIGKEAKIPGF
                     RPGKAPRDVLERHHSHLAKEEVFKDIIPQAYKDSLEKEKIEAIDLPQISEVQLESNVL
                     SFKATVETRPEIGLKDYKKIKLVH"
BASE COUNT          659 a          500 c          648 g          549 t
ORIGIN      
        1 caatgaccgt ttagagattc ccatgttgac caattatgcg gcggtttaga atctgtttga
       61 caattgcccc tggaatgata ttatataaaa ttccacgcgt agcggtgcga tttatcgcac
      121 cctgccacag tccgtcttaa actaactgtt ctggtgtcct tgtgactggc gctctggcgc
      181 gctcgtgatt aatgaattga tatggagatg cccggataaa tatggctaaa aagatagttt
      241 tgatcctggt tttcctcttt gttttcagct ttgccctgga cgctgctccc aggaaagcgg
      301 agcttaagcc tcaagaggcg gagcctgacc agcagatgaa tgacttttcc ctccagggct
      361 taagtcaagg ggggaaaaag gcctgggagg tgcgggggaa gtccgcggat atccttaccg
      421 acatcgttaa acttaccagc gtcaatgccg atgtctacgg tgaagaagag aatattaacc
      481 tggtggggga caaggggaca tatgataaat ctaccggtaa gatccatctc caggataatg
      541 tggtgattac tacctccggc gggggcaagt tgaccaccaa ttatttagac tgggaccggg
      601 agtctaagag ggtaagcacc gaggatgtgg tgaatatcca gcgccagaac atcaaggccg
      661 tggccaaagg cctggagggc gatcctgatc tgaaaaaggt ctcccttaaa gacgatgtta
      721 cggtggagat ccaggaggta ttggaagaag cccagagcga tgacccttta ttatccagta
      781 aggacccgac tattgttacc tgcgacgggc ctttggagat tgattatgaa aaagagatcg
      841 ccatttttaa caataatgtt aaggtggacc agaaagagca gggggtaatg cacgcggata
      901 agatggaggc ctattttgac tttaaggtca agaagatcct gcgcataaag tccataggca
      961 atgtaaagat tgtcaaggac ggcaatacct cttacagcga cgaggccttg tattcggcgg
     1021 cggacaaaaa gatgaccctt accggcaggc cgcgcttagt cataaattca caggaaaagc
     1081 tgcttgacac agcgtcagac aatgcacctt ctggaaacta aaggattaga aaaggcttac
     1141 aacggtaggt cggtggtctg cggggttgac cttatcgtca aaaggggcga gattgtgggt
     1201 ttgctcgggc ctaacggcgc gggcaagact accacctttt atatggtggt ggggatagtg
     1261 gccccggagg cgggtaagat tatctttgat aacgaggata ttaccaaact gcctatccac
     1321 gaacgcagcc gtttgggtat agggtatctt ccccaggaga cctcggtctt tcgcaagttg
     1381 agcgtggaag aaaatattat ggcggtttta gagaccctgc ctttaagccc cagccagcgc
     1441 tccaagaggc tgggggaact gcttaatgaa ctgaatatcg cccatttagc caaaaataag
     1501 gcctatacct tatccggagg agaggcccgg cgcttagaga ttacccgggc cctggtaacc
     1561 cggccgtcct tcatgcttct ggatgagccg ttttccggga tagacccgat tgtagtttct
     1621 gaagcccagg ccattatcaa ggatttaagg gccaagggct tgggggtttt aattaccgac
     1681 cacaatgtcc gggagaccct ttcagtaacc gaccgggcct atttgatttc cgagggcaag
     1741 atcttgattt caggaagcgc ccaggagttg attgacaatc cccaggcccg cagtctttat
     1801 ctgggcgaaa aatttagaat gtagagagtc attgcgagat gtgaaaaaac ggataggcgg
     1861 gacattcttg tcccgcatcg ttgaggcggg gttagaaaac cccgcctatc ctaaagattg
     1921 taatggcatt acgacatagt ttggatgcga aagtggatga aaggacataa taagaaatga
     1981 aggtagaaac taaaaaatta gaatccaata aaatacagct ggatatccag gtcccggcgg
     2041 agacggtgaa gcagaagttt aatgaggtct acgaaagaat aggcaaagag gcaaaaatcc
     2101 ccggattccg cccggggaag gcccccaggg atgtcttaga aagacatcac agccatttgg
     2161 ctaaggaaga ggtgtttaag gacattatcc cccaggccta taaggattct ttagagaagg
     2221 aaaagattga ggctatagac ctgcctcaaa tcagcgaggt ccagttagaa tctaatgtgt
     2281 tgtcttttaa ggccacggta gagacgcgcc cggagatagg gctcaaggat tataagaaga
     2341 taaagcttgt tcataa
//
LOCUS       DATDUB010000108         2689 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_2240679, whole genome shotgun sequence.
ACCESSION   DATDUB010000108 DATDUB010000000
VERSION     DATDUB010000108.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2689)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2689)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2689
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2240679"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..490
                     /locus_tag="VJA84_02135"
     CDS             <1..490
                     /locus_tag="VJA84_02135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40957.1"
                     /translation="RSGSASRNGDDHLLGFASDISFKRGPFELVGDYAYWDFENGALI
                     DHDNDNAADEVSAPKYMRGFYLEPRYHFWPKFLSNTFLGRGFKDPKLTLVGRYDWVDI
                     ADDGDAGSGSNKEKRYTLGINYRPILSWVFKLEYQRNSSSNEVLERGDKDGVMASMAV
                     GF"
     gene            546..1040
                     /locus_tag="VJA84_02140"
     CDS             546..1040
                     /locus_tag="VJA84_02140"
                     /inference="COORDINATES: protein motif:HMM:NF016121.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-binding protein"
                     /protein_id="HLD40958.1"
                     /translation="MIFCVSLFLIFSFLSPLRAEVYLSPEEAIGKIFPDYQYYKMQIH
                     TLEEQKLDVFTVLLGDKLLGWAVALNEQGMKEPITFLVGVDIEGKVLDVYVLEYREPH
                     GFEIRRRAFLSQFFGKTADSPLAVGQDIDAVTQATISSTAAVRAVKKSLAVVSDLRSN
                     FSGN"
     gene            1048..1557
                     /locus_tag="VJA84_02145"
     CDS             1048..1557
                     /locus_tag="VJA84_02145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013780317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FeoB small GTPase domain-containing protein"
                     /protein_id="HLD40959.1"
                     /translation="MRKIAIVGSPNVGKSVLFNNLTGSYAVVSNYPGTTVEVSRGKTK
                     IGDEEFEVVDTPGMYSLFSITEEERVGRTILLEENPAVILHVIDARNLERMLPLTMQL
                     LEAGLAVILVLNIMDEAQKAGIRIDILRLEKELNIPAVGTVSTTGKGIDVLRGKIEEY
                     VKTRAEKQQ"
     gene            1526..>2689
                     /locus_tag="VJA84_02150"
     CDS             1526..>2689
                     /locus_tag="VJA84_02150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003539799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside recognition domain-containing
                     protein"
                     /protein_id="HLD40960.1"
                     /translation="MSKPELKNSSNLGYSDILEVYITKIEALLQAGGFGYGKPNHGPL
                     AGGYKITKRSLALLLLQEDAEILKLVQEREPGNFTGIEKLIQEAKGNYSQPLNYIISL
                     RRQEEAGAISSRVMIFQKNPLITFRERLSRIMMNPLTGAPILLFVLYYGLYQFVGVWG
                     AGTLVDFLEDHIFINHINPWVTNLVNSTIPFKLIQDLLVGEYGVITLGVRYAFAIILP
                     IVATFFFAFAIVEDTGYLPRLAMLVDQLFKRIGLSGRAVIPLVLGFGCDTMATMVTRT
                     LPTKRERIIATLLLALAIPCSAQMGVIFALLEGTPLGLAVWLGVIILVFLLVGFLAAK
                     IMPGELPTFYMEIPPLRLPQLSNVLRKTWSRLSWYFKEILPLFIFASLLIWIGQ"
BASE COUNT          638 a          578 c          738 g          735 t
ORIGIN      
        1 ccgttccggc tctgcctcca gaaacggcga cgaccatctc ctgggatttg ctagtgatat
       61 aagttttaaa cggggtccgt ttgagttggt aggtgattac gcctattggg attttgaaaa
      121 cggggccttg attgaccatg ataatgataa cgctgcggat gaggtttccg cccccaaata
      181 tatgcggggt ttttaccttg agccgaggta tcatttctgg ccgaagttct taagtaacac
      241 cttcttaggc cggggattta aggatcccaa gcttactctg gtgggccgtt atgactgggt
      301 ggatattgcc gacgacggcg atgccggaag cggcagtaat aaggaaaaac gctacacctt
      361 agggataaat taccgtccca ttttgtcctg ggtctttaaa ttggaatacc agcgcaattc
      421 ctccagcaac gaagtcctgg agcgggggga taaagacggg gtcatggcct caatggcggt
      481 cgggttttaa taattaggga cagacactaa ttattaaaaa ttagtgtctg tccctaataa
      541 aaaaaatgat tttctgcgtt agtttgtttc tgatattttc tttcttgagt cctttgaggg
      601 cagaggttta tcttagtcct gaagaggcga taggaaagat tttccccgat tatcagtatt
      661 ataagatgca gatccatacc ctggaggaac aaaagctgga tgtctttacg gtattattag
      721 gcgataagct tttgggttgg gcagttgccc ttaatgagca ggggatgaaa gagccgatta
      781 ccttcttggt tggcgtagac attgagggca aggttttgga tgtatatgtc ctggaatacc
      841 gcgagccgca cggttttgaa ataaggcgcc gggccttttt aagccagttt ttcggcaaaa
      901 cagcggattc gccgctggcg gtgggccagg atatagacgc ggttacccag gctactattt
      961 cctccacggc ggcagtccgg gcagtcaaaa agtcccttgc ggtagtcagc gatttaagaa
     1021 gcaattttag cgggaattag cgaaaaaatg cgtaaaatag ccatagtcgg ttcgcctaat
     1081 gtcggcaagt cggtcctgtt taataacctt accggaagct atgccgtggt ctcaaattat
     1141 ccgggaacta cggttgaggt ttcccgcggc aagacaaaga taggcgatga agaatttgag
     1201 gtggtagata ccccggggat gtattccctg ttttccataa ccgaggagga aagggtgggc
     1261 cggacaatcc tgctggagga gaatccggcg gtaatcctgc atgtgattga cgcccggaat
     1321 ttagagcgga tgctgccttt gaccatgcag ttattagagg caggcctcgc ggttatcctg
     1381 gtcttaaaca ttatggatga ggcccagaaa gccgggataa ggattgatat cctccggctg
     1441 gagaaggaat taaatattcc ggctgtcggg acggtttcta ccaccggaaa aggtatagat
     1501 gtcttaaggg gaaagattga ggaatatgtc aaaaccagag ctgaaaaaca gcagtaatct
     1561 aggatacagc gatatcctgg aggtttatat tactaagatt gaagccctgc ttcaggctgg
     1621 tggctttggc tatgggaagc caaaccacgg cccgctggct ggcggctata aaataactaa
     1681 gcgctcgctg gctctcctgc tgttacagga ggacgctgaa atcctgaaat tagtccaaga
     1741 gagagagcct ggtaatttca ccggcataga gaagctgatt caggaggcta agggtaatta
     1801 ttcccagccc ctgaattata tcatcagcct gcgccgccag gaagaggccg gcgccatatc
     1861 ttccagggtg atgattttcc agaaaaatcc cttgatcacc ttccgggagc gcttaagccg
     1921 gattatgatg aaccctctta ccggcgcgcc catactttta tttgtcctct attatgggct
     1981 gtatcagttt gtgggggtct ggggggcggg gaccctggtg gatttcctgg aagaccatat
     2041 ttttataaat catatcaatc cctgggtaac taacttagtt aattcaacaa taccttttaa
     2101 gcttatccag gatttgctgg ttggggaata cggggtgatc accctggggg tgcgttatgc
     2161 ctttgctatt atcttgccga ttgtggccac cttcttcttt gcctttgcca ttgtggagga
     2221 caccggatac ctgccccggc tggcaatgct ggtggaccag ttgtttaagc gtataggcct
     2281 ttccggaagg gcggtcatac ctttggtttt gggctttggc tgtgatacta tggctacaat
     2341 ggttacccgc accctgccca ccaaaaggga gaggattatt gccaccctgc ttctggccct
     2401 ggctattccc tgctcagcgc agatgggggt tatatttgct ttgttagagg gaacaccttt
     2461 gggattagcg gtgtggttgg gggtgattat cctggttttc ctgctggtgg gtttcctggc
     2521 ggccaagatt atgcccgggg aattgcctac cttttatatg gagataccgc cattaagact
     2581 gccccagctt tccaatgtct tgcgcaagac ctggagccgc ttgagctggt atttcaagga
     2641 gatattaccg ctttttattt ttgccagcct gcttatctgg ataggccag
//
LOCUS       DATDUB010000109         4324 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_2406145, whole genome shotgun sequence.
ACCESSION   DATDUB010000109 DATDUB010000000
VERSION     DATDUB010000109.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 4324)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4324)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4324
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2406145"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(154..624)
                     /locus_tag="VJA84_02155"
     CDS             complement(154..624)
                     /locus_tag="VJA84_02155"
                     /inference="COORDINATES: protein motif:HMM:NF013625.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-binding domain-containing protein"
                     /protein_id="HLD40961.1"
                     /translation="MNKGIFLVLVMLAGVGFVSGCQKKAVEEQTVEISAPVEGMVSAP
                     EEAGAQIQIAQPQIQASAPVAVSETAPAPVNPQARTQEWTPPAEEEIQQALKNAGLYE
                     GEVDGKIGPKTNKAIEEFQAKNNLIVDGKVGRKTWEKMKEYLNMAAVAPQEVGN"
     gene            complement(870..1340)
                     /locus_tag="VJA84_02160"
     CDS             complement(870..1340)
                     /locus_tag="VJA84_02160"
                     /inference="COORDINATES: protein motif:HMM:TIGR04366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WbuC family cupin fold metalloprotein"
                     /protein_id="HLD40962.1"
                     /translation="MQKITLELISQVADQAKSSPRKRMHHNFHKASDDKIQRLLNVCL
                     ADTYIRPHRHKDPDKDEVFIILKGRIMIVEFDDSGRVRETFILDAQKGNLGVEIPARA
                     WHTFICLEDGSCVYEVKEGPYSPLTDKDFARWAPAEETPEAGVFKGKIIKELGV"
     gene            complement(1321..2502)
                     /locus_tag="VJA84_02165"
     CDS             complement(1321..2502)
                     /locus_tag="VJA84_02165"
                     /inference="COORDINATES: protein motif:HMM:NF012377.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0071704 - organic substance metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cellulase family glycosylhydrolase"
                     /protein_id="HLD40963.1"
                     /translation="MLKNKRLKGVNLGGWLLMEGYILGGRNISESEFKRNFSKIHGAV
                     GLREFERLFRDNFIREVDFKNISEMGANVVRLPFNHRLIETRPFVYSEEGFSYLNQAL
                     DWARKYSLGVILDLHAAPGAQNRDWHSDSDGRARLWENKEYQERTYLLWERIADRFKD
                     KPALIGYDVLNEPVIAKEKIARLKNFYKNALRRIKAVDKGHLIFLEGNLWATQIDFLD
                     ELIEDNARLSIHAYEPLSYTFNFTPLRGFPGTINVEKWDKARIHRYLKPYADFARKSK
                     VNRIFAGEFGINWRGGFWGELDWLGSILDFFEGAGFDYTYWTYKAMAGSVFPDGLYQY
                     LPNNNYIRREGPVYGWENYTRLWKTDKDKIVDFWKSERFTPNQKLISLLKRHFNAKNN
                     A"
     gene            complement(2588..2986)
                     /locus_tag="VJA84_02170"
     CDS             complement(2588..2986)
                     /locus_tag="VJA84_02170"
                     /inference="COORDINATES: protein motif:HMM:NF015758.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MazG nucleotide pyrophosphohydrolase
                     domain-containing protein"
                     /protein_id="HLD40964.1"
                     /translation="MAKQTKFSELKRVFDVLHGPKGCLWDRKQTHKTLVKYLREESRE
                     FIETVNKNSCRHMKEELGDLLLQVMFHSQIAKKNGRFDIEGVIDGLIKKLKRRHPHVF
                     GTVKVQSVGEIIENWDKIKAREKSRARRGK"
     gene            complement(3003..3149)
                     /locus_tag="VJA84_02175"
     CDS             complement(3003..3149)
                     /locus_tag="VJA84_02175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40965.1"
                     /translation="MIITGLHLQPLNEMVKSSLYDLIGEKNVFSNLKDALKRAEELMA
                     SKQR"
     gene            complement(3115..3324)
                     /locus_tag="VJA84_02180"
     CDS             complement(3115..3324)
                     /locus_tag="VJA84_02180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40966.1"
                     /translation="MLLSTFLVTVLIDLNAVIQLGVVLSAFIFMKKMSDVQHIRIIAK
                     EIDEDSRKIDQPHTIDNHRPAPPAA"
     gene            complement(3338..3670)
                     /locus_tag="VJA84_02185"
                     /pseudo
     CDS             complement(3338..3670)
                     /locus_tag="VJA84_02185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018629014.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015116 - sulfate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0008272 - sulfate transport [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SulP family inorganic anion transporter"
     gene            complement(3754..3870)
                     /gene="rrf"
                     /locus_tag="VJA84_02190"
     rRNA            complement(3754..3870)
                     /gene="rrf"
                     /locus_tag="VJA84_02190"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
     gene            complement(4075..>4324)
                     /locus_tag="VJA84_02195"
     rRNA            complement(4075..>4324)
                     /locus_tag="VJA84_02195"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT         1110 a         1188 c          865 g         1161 t
ORIGIN      
        1 agagcccggc cctttgtggg cctacccctt taagatatct tatgtctata gccgagaggt
       61 cattcactaa ggcaataata gtatgggcgg ggttcccccg ccctaatgat tacaaagaaa
      121 tgatgacaaa gggtgcgcag acctgcgccc ctactaattc cctacttctt gaggagcaac
      181 cgcggccata ttaagatact ctttcatctt ctcccaggtc ttgcggccga ccttgccgtc
      241 aacaatcaaa ttattcttgg cctggaactc ttcaatcgcc ttattggtct taggccctat
      301 cttgccgtca acctctccct cataaagccc ggcgttctta agcgcctgct ggatttcttc
      361 ctccgcaggc ggggtccact cctgcgtccg cgcctggggg ttaaccggcg ccggagcagt
      421 ttcagaaact gccacagggg cgctcgcctg gatctgcggt tgagctattt gtatctgcgc
      481 gccggcctcc tccggggcgg ataccatccc ttcaaccggg gcgctaatct ccacagtctg
      541 ttcctctacc gccttctttt gacatcccga cacaaaacca acgcctgcca gcattactaa
      601 aactaaaaat atacccttgt tcatctattc ctcctacggt taagaagcct ttattatttt
      661 tcttaaatta attgtaatcc ctttaagccg gtttgtccag aaaaattata cacccaatgg
      721 taacgcgtca gtcaataggg gaatttaata ctttgtcatt ctgagggagc agagcgaccg
      781 aagaatctcg tcgctaattt aaaagacgag atccttcgct atccgctcag gatgacattg
      841 tgacacagtc tgtatcgcaa aatttgggat tatacgccta attccttgat gatcttgcct
      901 ttaaatactc ccgcctccgg ggtttcctcc gctggcgccc agcgggcaaa gtccttgtcg
      961 gttaacgggc tataggggcc ctccttcacc tcataaacgc aggagccgtc ctctaaacaa
     1021 ataaaggtat gccaggcccg cgccgggatc tccaccccca gattgccctt ttgggcgtcc
     1081 aggataaaag tctccctgac cctgccactg tcgtcaaact ccacaatcat tattctccct
     1141 tttaaaataa taaagacctc atctttgtcc ggatccttat gccggtgcgg ccggatatag
     1201 gtatccgcca agcagacatt taacaaacgc tggatcttgt catcagaggc cttgtggaaa
     1261 ttatggtgca tcctcttcct gggcgaggac ttggcctggt cagcaacctg gctaataagc
     1321 tcaagcgtta ttttttgcat tgaaatgcct ctttagcaaa gatatcaatt tctgattagg
     1381 ggtaaagcgc tcgctcttcc agaaatccac aatcttatcc ttatcagtct tccagagtct
     1441 tgtgtaattc tcccagccgt aaaccgggcc ttcccggcgg atataattat tgttaggcag
     1501 atattgataa agcccatcgg gaaaaacgct cccggccatc gccttatagg tccaataggt
     1561 ataatcaaac ccggcgccct caaagaaatc caatatacta cccagccaat ccaattcccc
     1621 ccagaaaccg ccccgccagt ttatcccgaa ttcaccggca aaaatccggt tcaccttgct
     1681 tttccgggca aaatccgcgt aaggcttgag ataacgatgt atccttgcct tatcccactt
     1741 ttcaacatta attgtcccag ggaaaccccg caaaggagta aaattaaagg tgtaagataa
     1801 tggctcgtaa gcatgtatgc ttaagcgcgc attatcctct atcagttcat ccaggaaatc
     1861 aatctgggtg gcccagagat taccctccag gaatattaaa tgccctttat caacagcctt
     1921 aatccttctt agcgcgtttt tgtagaaatt ctttaaccgc gctatctttt ctttggcgat
     1981 taccggctca ttaaggacat cgtagcctat caacgcgggt ttatccttaa acctatccgc
     2041 gatcctctcc cagagtagat atgtcctttc ctgatattcc ttattctccc agagcctggc
     2101 cctgccgtct gaatcgctgt gccagtcgcg gttctgggcc ccgggggccg cgtgcaaatc
     2161 cagtattact cccaggctat actttcgcgc ccaatccagg gcctgattca aatacgagaa
     2221 cccttcctcg gaatagacaa aaggccttgt ctctatgagc cggtgattaa atgggagcct
     2281 tacgacatta gctcccatct ccgatatatt cttaaaatct acctcccgga taaaattatc
     2341 cctaaaaagc cgctcaaact cccttaatcc aacagcgccg tggatcttgc taaaattccg
     2401 cttaaactca ctctcggaaa tattcctccc gcccaagata tacccctcca tcaacagcca
     2461 accgcctaaa tttacccctt ttagcctttt attttttaac atattaatat tacctgcggg
     2521 ggtggccccg ccgtgcggga acaggacccc cgccctatat aacataaact tatggcagga
     2581 aacactatta tttcccgcgc ctggctcttg atttttcccg cgccttaatc ttatcccaat
     2641 tttctatgat ttccccgacg gattggacct ttaccgtgcc gaagacatgg ggatgccgcc
     2701 gttttagctt ctttatcaag ccgtcaatta ccccttctat gtcaaacctg ccgtttttct
     2761 tggctatctg ggaatgaaac atcacctgga gcagtaaatc ccccagttcc tctttcatat
     2821 ggcggcagct gttcttattg accgtctcaa tgaattcccg ggactcttcc cgcagatatt
     2881 taaccagcgt cttatgggtc tgtttcctgt cccatagaca gccctttggc ccgtgcagga
     2941 catcaaagac ccttttcaac tcgctgaatt ttgtctgttt agccataatt ttaattatac
     3001 ctctatcttt gtttagaagc catcaattct tcagcccgct taagagcgtc tttcagattg
     3061 gagaatacat tcttttcgcc aatcaaatca tagaggctgg acttaaccat ctcattaagc
     3121 ggctggaggt gcaggccggt gattatcaat tgtatgcggc tggtctattt tcctgctgtc
     3181 ctcgtcaatt tccttagcga taatcctgat atgctgaaca tcggacattt ttttcataaa
     3241 tataaacgcg gacaatacca cccccagctg aatgaccgcg ttcaggtcaa taaggacagt
     3301 aaccaggaaa gtggataaaa gcaccaccac cgaattcggc aaatcccata atcataagaa
     3361 gaatcccggc cataaaggta gcgataacca aagaatccgc gccgtatttc tggaccatcg
     3421 cgtagacgat aaccacaaag gcgcctgtcg gaccgcctat ctgcacccgg ctgccgccta
     3481 atgccgagat taaaaagccg gcgattatgg cggtgaataa ccctttttcc ggcgataggc
     3541 cggaggcaat ggcaaaggat atagccagcg gaatagccac tatccccaca ataatcccgg
     3601 caatggaatc cgagagaaac tgtttcttgg tgtaaccttt taaagtagta aacaactttg
     3661 ggtatagcat aaaattcgcg ccccttgcgt ataataaaaa caagtcaaag aaaaaacccc
     3721 gcagaataaa ctgcgaggtc ttttctcaat taaatggagc atcgtcctac tctcccatag
     3781 cattactact acagtaccat cggccctaga gggcttaact gccgtgttcg gaatgggaac
     3841 gggtgtggcc cctccggcaa agacactcca aaaaacagaa ctaagaatta agagctaaga
     3901 ttggagaaag agcgtaactt cttaaaaact tatgacaact tatacaatca agcgggcaat
     3961 ctatttattg ccggtaatac attttattat attatgcctt tttaggcata tagcgcgcag
     4021 cgtttaacat atagtttcct acatgttaag cgctacacac tatatgctgt aaaaaaggtc
     4081 aagccgattg gctattagta cgcatcagct caaatcctta cggatcttac accccgcgcc
     4141 tatcaaggtc gtagtctaca accagccttc agtccttacg gacagggata cctatttttg
     4201 aggggggctt ggcacttaga tgctttcagc gcttatccct tccgaacatg gctactcagc
     4261 ttctgccctt ggcaggacaa ctgaaacacc agaggtccgt ctccccaggt cctctcgtac
     4321 tata
//
LOCUS       DATDUB010000110         3517 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1900518, whole genome shotgun sequence.
ACCESSION   DATDUB010000110 DATDUB010000000
VERSION     DATDUB010000110.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3517)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3517)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3517
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1900518"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..415
                     /locus_tag="VJA84_02200"
     CDS             <1..415
                     /locus_tag="VJA84_02200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="chromosome segregation protein SMC"
                     /protein_id="HLD40967.1"
                     /translation="VRLKDITELILGTGIGAESYSLVEQGKIDLILSSRPEDRRVVFD
                     EAAGISKYKSQKRETLRRLEDTDANLLRINDIITEVKRQINSLERQAAKARRYKEVFE
                     RLKEIESVMAAYQLNTHETQISGLNSQLNQLLELI"
     gene            586..2883
                     /locus_tag="VJA84_02205"
     CDS             586..2883
                     /locus_tag="VJA84_02205"
                     /inference="COORDINATES: protein motif:HMM:NF014516.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40968.1"
                     /translation="MSGLKTRITAITGQKGQLQEKIIRDEEKILGFKAALSGLLQELE
                     GKKARETKADTELEEVSSSISSSQANLKQAKSKVLEHAAEEASIHNQLQKSSGELNQA
                     IARKKRLDIEKVKAGEELVAISQNLKSAQDAEDASGQKFLKQKETCQDLNKELNNSIQ
                     EKESLSLRLQNLDNEKAALESQKEFLSTLKLRYENITESSRAVLYLDSLNDRNISGII
                     LRVEGIEKTEDAKYKATGLAKPISLDPQEIINKIEKLKSELEEIKAGIDNKTSLINSL
                     NERLSASESALREAELEYNTHKNKLENISQASDKLKEEFEIIALDAQEVNSQLDKLSA
                     EEKAVNENLLKVKESSRANQQAIERSAEEIAQRNSLRETILLNLTQLRTEISGYQEKT
                     ASCQETQNILEDARFKDKSILEGLVQEEDNSNRRILELQAASGALEAEIEKLKKQKSG
                     LEKELSGKTSLLDELKVSFSARGDDISKRKDILDANKAKTYEIQMQLQQASFLESGIL
                     ERMRQVYKIGKEEIPSRFKEDFNPDETSQEIELLKQKIESYGQVNLVAIEEFEELRQR
                     FDFLTNQQSDLIKSKESLHEAILKINRTTKKMFLETFEKLALEFKNYFRLLFGGGEAQ
                     LFLQDEQDVLESGIEIVCRPPGKKLQNVLLLSGGEKSMSAIALLFAIFKVKPSPFCVL
                     DEIDAALDEANVDRFSRMLVDFTSQSQFIVITHNKKTIANANIMYGITMEKAGISKIV
                     SVKLAQKKEKTLEEAPEAAEVKNTP"
     gene            2921..>3517
                     /locus_tag="VJA84_02210"
     CDS             2921..>3517
                     /locus_tag="VJA84_02210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40969.1"
                     /translation="MIKKIGIILFLVLAAQYAGRPQGAAPTVAFAQQQTECPPECVTD
                     SMEIVTWYPSPYSEYEELRLYPTTRDANYCDNDKIGLMYYDDAGTPSFADDDKIRVCK
                     GTSLGWQELGPWAVSDNNIYNTNTGNMGIGTTEPGAKLDVAGGVKVGNDISECGSTKE
                     GTIRYNSAVGCMEYCDGVNLTWSSIDSSCQPAKTSCKVI"
BASE COUNT         1111 a          818 c          878 g          710 t
ORIGIN      
        1 ggtgcgcctg aaagacatta ccgaacttat cctggggacc gggatcgggg cggaaagtta
       61 ctctttggtt gagcagggaa agattgacct tatcctaagc tcaaggccgg aagaccggcg
      121 cgtggtcttt gacgaggccg ccggcatcag caaatataaa tcccaaaaaa gagagaccct
      181 gcgcagatta gaagacaccg atgccaatct cctgcgcata aacgacatca ttaccgaggt
      241 caagcgccaa atcaattccc tggagcgcca ggccgctaaa gccagacgct acaaagaggt
      301 ctttgaaagg ctcaaagaaa tagaaagcgt tatggcggca tatcagctca atacgcacga
      361 gacccaaatc tccggcctga attcccaatt aaatcagctc ttagagctga tttaattggg
      421 aattcagata cccaaaccct ggctgaactt aaccaggaac tgaataaatc ccgggaagag
      481 ctgaataatc tggaaaacgc cctggatagt ctgcgcgccc aggccaataa tgccgataac
      541 gccatttcca taaacagcca agagcaaggt tttaaccagg agagaatgag cggacttaag
      601 accaggataa cggctattac cggacaaaag gggcagttgc aggaaaaaat tatccgggac
      661 gaggaaaaga tcctcggctt taaggccgcg ttgtccggcc tgcttcaaga attagaaggc
      721 aaaaaggccc gagaaacaaa ggcggatacg gaattggaag aggtttcctc gtccataagc
      781 agcagccaag ccaaccttaa acaggccaag tctaaagttt tagaacacgc ggcagaagag
      841 gcctctatcc ataaccagct ccaaaaatcc tccggagagc ttaatcaggc cattgcccgc
      901 aaaaagagat tagacattga gaaggtaaag gccggggaag aactcgtcgc tatcagccaa
      961 aaccttaagt ccgcccagga tgctgaagac gcctccggtc agaaattcct taagcagaaa
     1021 gagacctgcc aagatctgaa taaagagctc aataactcca ttcaagagaa agaaagcctc
     1081 tccctgcgcc tgcagaattt agataacgag aaggcggcct tagaatccca gaaagagttc
     1141 ctttccacct taaaactaag gtatgaaaat atcaccgagt cttcccgcgc ggtactttat
     1201 ttggactctt taaacgaccg gaatataagc ggtattatct taagagtgga agggatagag
     1261 aagactgaag acgctaaata caaggccacc ggcctggcca aaccgatttc cctggatccg
     1321 caagaaataa tcaacaagat tgaaaagctg aaatccgagc tggaagagat aaaagccggg
     1381 atagacaaca agacttcctt aataaactct ttaaacgaga gactctctgc ctctgaatcg
     1441 gctttacggg aagcggagct ggagtataac acccataaga ataaactgga aaacatctct
     1501 caagccagcg ataagctcaa agaagagttt gagatcattg ccttggacgc gcaagaggtc
     1561 aattcccagt tagacaaatt aagcgccgag gaaaaagccg ttaatgaaaa cctgcttaag
     1621 gtaaaggagt cctcccgggc caaccaacag gctatagagc gctccgcgga ggaaatcgcc
     1681 caaagaaaca gcctgcggga gacgatactc cttaatctta cccagctaag gaccgaaatc
     1741 tccggatacc aggaaaaaac cgcctcttgc caagagaccc aaaatatcct ggaagatgcc
     1801 cggtttaaag ataaaagcat cctggaaggc ctggttcagg aagaagataa ttctaaccgg
     1861 cgcatcctgg aattgcaagc cgcttccggc gctctggagg cggagataga aaagctcaaa
     1921 aaacaaaagt cagggttgga aaaagagctt tccggaaaaa cctctttatt ggatgagcta
     1981 aaagtcagct tcagcgcccg gggagacgat atcagtaagc gcaaagatat cctggatgcc
     2041 aacaaggcca agacctatga aatccaaatg cagttacaac aggcctcttt cttagaaagc
     2101 ggcattttag aaaggatgcg gcaggtctat aaaatcggca aagaagagat ccccagccgt
     2161 ttcaaggaag atttcaatcc cgatgaaacc tcccaggaaa tagaactgct caagcaaaag
     2221 attgagtcct acggccaggt aaacttagtg gcaattgagg agtttgagga attaaggcag
     2281 agatttgatt tcctgaccaa ccagcagtct gacctgataa agtctaaaga atccctgcac
     2341 gaggccatcc taaaaatcaa ccgcaccacc aagaagatgt tcttagagac ctttgaaaag
     2401 ttggcgctgg aatttaagaa ttatttccgc ctgcttttcg gcggcgggga ggcccagcta
     2461 ttcctccagg atgagcagga tgtcttggaa agcgggattg agattgtctg ccggccgccc
     2521 ggaaaaaaac tccagaatgt cctgctttta tccggggggg agaagtcaat gtcggccatc
     2581 gcccttttgt ttgccatttt caaggtcaag ccttcgccgt tttgcgtctt ggatgagatt
     2641 gacgcggcct tagacgaggc caatgtggac cgtttcagcc ggatgctggt ggattttacc
     2701 agccaatccc aatttatcgt gatcacccac aacaaaaaga ccattgccaa cgccaacatt
     2761 atgtacggga tcacgatgga aaaggccggt atctccaaaa tcgtctcggt aaaactggcc
     2821 caaaagaaag agaaaacgct tgaggaagcc ccagaggccg cggaagttaa aaatactccg
     2881 tagggacagg cccctgtgcc tgtccaaagg gaggaagaat atgatcaaga aaataggaat
     2941 tattttgttt ttggtattgg ccgcgcaata tgcagggcgg ccacaggggg ccgcccctac
     3001 agtggccttt gcccaacagc aaacagaatg cccgccggaa tgcgttacgg atagtatgga
     3061 gattgtaacc tggtatccct cgccctacag cgagtatgag gaactgcggc tgtatccgac
     3121 tacccgggat gccaattact gcgacaatga taaaatagga ttgatgtatt acgatgacgc
     3181 gggaacgccg tcatttgccg atgatgataa aataagggtg tgtaagggga cttcattagg
     3241 ctggcaggaa ttagggccct gggccgtctc cgacaacaac atttacaata ccaataccgg
     3301 aaacatgggc atcgggacga cggagccggg ggcgaaatta gatgtggcgg gaggggtaaa
     3361 ggttggcaat gatataagtg aatgcggttc aacaaaagaa ggaactattc gctacaatag
     3421 cgcggttggt tgcatggaat attgcgacgg agttaattta acatggtcat ccatagattc
     3481 ttcatgccaa cccgctaaaa catcctgtaa agttatt
//
LOCUS       DATDUB010000111         2931 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1902636, whole genome shotgun sequence.
ACCESSION   DATDUB010000111 DATDUB010000000
VERSION     DATDUB010000111.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2931)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2931)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2931
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1902636"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..250
                     /locus_tag="VJA84_02215"
     CDS             <1..250
                     /locus_tag="VJA84_02215"
                     /inference="COORDINATES: protein motif:HMM:NF015069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="SemiSWEET family transporter"
                     /protein_id="HLD40970.1"
                     /translation="WQFVGIIAAGLTSLAFYPQVVKIYRTKSSRDLSLGSLWQMAIGI
                     SLWIAYGISLKNYIIILANAVALAAFLSALVLYYKYRK"
     gene            308..847
                     /locus_tag="VJA84_02220"
     CDS             308..847
                     /locus_tag="VJA84_02220"
                     /inference="COORDINATES: protein motif:HMM:NF021487.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase"
                     /protein_id="HLD40971.1"
                     /translation="MDFRAVLRLIGEDFHKEGVRYALIGGFALGALGVPRATIDLDFI
                     INSDDWIKVDRIMQAQDYRCVYKSDEVAQYVSKSRLFGEVDFILARRNISRKMLERAE
                     EKKIFSMKVRVLLPEDIIGLKIQALANDKTRAAKEYLDIESLLGFHKNKLDWNVLKDY
                     FKLFDLGGKYEEYRKRFRA"
     gene            876..1061
                     /locus_tag="VJA84_02225"
     CDS             876..1061
                     /locus_tag="VJA84_02225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40972.1"
                     /translation="MARSRRLREDFRKISENRYNPFLVNGAVDLNRFVSFLTDYNEFI
                     NHAKRPFRKIIAKDMRL"
     gene            1141..2187
                     /locus_tag="VJA84_02230"
     CDS             1141..2187
                     /locus_tag="VJA84_02230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019509287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HLD40973.1"
                     /translation="MNALITGSAGLIGSEAAVFFAEKGYRVFGIDNDMRRYFFGQEAS
                     TEWNRKRLEEKLKGGYIHYRADIRNNEEIEGIFRKDKFDLIIHTAAQPSHDWAAKEPF
                     TDFTVNANGTLVLLENFRKYCPEAVFIYTSTNKVYGDRPNELPLVELEKRYELPKEHL
                     YYRGIDESMSVDYCKHSLFGASKLAGDILVQEYGRYFGLKTGIFRGGCLTGPAHSGTQ
                     LHGFLAYLIKCVATGVKYTIFGYKGKQVRDNIHSFDLVNMFWHFAQNPRRGEVYNAGG
                     SRQSNLSILEAIEKVEKILHKKAVYEYKPENRIGDHIWYISDVTKFKAHYPEWDFKYN
                     IDMILEEICKAGHF"
     gene            2235..>2931
                     /locus_tag="VJA84_02235"
     CDS             2235..>2931
                     /locus_tag="VJA84_02235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014801480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HLD40974.1"
                     /translation="MNIKYKTILITGGAGFIGSSLALSLRRKYPSLNVIALDNLKRRG
                     SELNLPRLKEAGIRFVHGDIRNPEDLRLDDEIGLMIEASAEPSVLAGFGDNPEYIIRT
                     NLSGTINCLELCRRKKADIIFLSTSRVYPYNAINRLKTTETDTRLVWADRQSEEVFGW
                     SPEGIGENFLLYGPKTLYGATKLASEFLLQEYIANYGIKGVINRLGVVAGPWQFGKVD
                     QGVFTLWMLAHYFR"
BASE COUNT          804 a          582 c          772 g          773 t
ORIGIN      
        1 ctggcaattc gtagggatta tcgccgctgg tctgaccagc cttgcctttt atcctcaagt
       61 ggtcaagatc taccgcacca agtcttcccg ggacttgagt ctggggagtc tgtggcagat
      121 ggccataggg attagtttgt ggatagccta tgggatatct ctcaagaatt atattatcat
      181 cctggctaac gcagtcgctt tggccgcgtt cttaagcgcc ctggttttgt attataaata
      241 caggaaataa tcaagggtaa atataaaatt gtagcggcgt gatttatcac gcccgtgagg
      301 agggacagtg gattttcggg cggtcttaag attgatagga gaagattttc ataaggaggg
      361 ggttcgttac gctttgatag gcggattcgc cttaggagcg ttgggtgttc ccagggcaac
      421 cattgatctg gattttatca ttaattctga tgattggata aaggtggata ggattatgca
      481 agcgcaagac taccggtgtg tctataagag cgatgaagtg gcccaatatg tgtctaaaag
      541 taggcttttt ggcgaagttg attttatcct ggcgcgcagg aatatttccc gcaaaatgtt
      601 agaacgggca gaggagaaga aaatattctc aatgaaggtt agagtgttgt taccggaaga
      661 cataatcgga ttaaagatac aggcattagc aaatgacaag acaagagccg ctaaagagta
      721 tctagatata gaatctctgc ttggattcca taagaacaaa ttagattgga atgttcttaa
      781 ggattatttt aaactatttg acttgggagg caaatatgag gaatacagga aaaggtttcg
      841 cgcttagcca agaagacaaa agagagcttc ttgaaatggc tcgctcaaga cgcttacgag
      901 aagactttag gaagatatca gaaaaccgct ataatccctt tttggtaaat ggggcggtag
      961 atttgaatag atttgtcagt ttcctcaccg actataatga gtttatcaat catgccaaaa
     1021 ggccatttcg caagattatc gctaaagata tgaggcttta aagatgaaac ccgcgccttc
     1081 catgaattca atagttttaa gatttagaaa gtgccgggtg aataaaaaag aaggtgcggg
     1141 gtgaacgcgc ttattaccgg ctctgccggg cttattggtt ccgaggcggc tgtttttttt
     1201 gccgaaaagg gataccgggt ctttggcatt gataatgata tgcgccgtta tttctttggc
     1261 caggaggcct caacggagtg gaatagaaag cggctggagg agaagcttaa aggcggctac
     1321 atccattacc gcgcggatat ccgcaataat gaggaaatag aaggaatttt ccgcaaggat
     1381 aagtttgatc taattatcca taccgcggcc cagcccagtc acgactgggc ggccaaagag
     1441 ccgtttaccg attttaccgt gaatgccaac ggcaccctgg ttttgctgga gaatttccgc
     1501 aaatattgtc cggaggcggt gtttatttat acctcaacca ataaggtcta cggcgaccgg
     1561 ccaaacgaac tgccgttagt agagctggaa aaaagatacg agctcccgaa agagcatctc
     1621 tattacaggg ggatagatga atcaatgagc gtagactatt gcaaacacag cctgtttggg
     1681 gcctcaaagc tggccgggga tatcttagtc caggaatacg gcagatactt tgggctaaag
     1741 accggcatct tccgcggggg atgtcttacc gggccggcgc atagcggaac ccaactgcac
     1801 gggttcctgg cttatttgat taaatgtgtg gctacagggg ttaaatatac catcttcggt
     1861 tataaaggaa agcaggtgcg ggataatatc cacagctttg atttggtgaa tatgttctgg
     1921 cattttgctc aaaatccccg ccgcggggaa gtttacaatg ccggaggaag ccgccagtcc
     1981 aacctctcta tccttgaggc tatagaaaag gtggaaaaga ttcttcataa aaaggcggta
     2041 tatgaatata agccggagaa tcgcatcggc gaccacatct ggtatatctc cgatgtcact
     2101 aaattcaagg cccattatcc ggagtgggat tttaaatata atatagatat gattctggaa
     2161 gaaatatgta aggcagggca tttttaaatt attgcgtata gttcctcccc ctcgatgggg
     2221 gaggttaggt gtgggtgaat attaaatata aaactattct aatcaccggc ggcgcgggct
     2281 ttatcggcag cagcctggct ctttccttga gacggaaata tccgtccttg aatgtcattg
     2341 ccttggataa tctcaagcgc cggggctcgg agttgaatct ccctagatta aaagaagcgg
     2401 gaatcaggtt tgtccacggg gatatccgta accctgaaga cctgcgcctg gatgatgaga
     2461 taggcctgat gattgaggcc tcggcagagc cgtcggtgct ggctggattt ggcgataatc
     2521 ctgaatatat tatcaggact aatcttagcg gcaccatcaa ttgcctggaa ttatgccgcc
     2581 ggaagaaggc ggacatcatt ttcctttcca ccagccgggt ttatccgtat aatgccataa
     2641 acagacttaa aacaacagaa accgataccc gtcttgtctg ggcagataga caaagcgaag
     2701 aggtctttgg gtggtcgcct gaaggcatag gtgagaattt ccttctttac ggccccaaga
     2761 ccctttatgg cgctaccaag ctggcctcgg aatttcttct gcaagagtat attgctaatt
     2821 acgggataaa aggggtgatc aaccgcctgg gggtggttgc cgggccttgg cagtttggca
     2881 aggttgatca gggcgttttt accctttgga tgctggccca ttatttcaga a
//
LOCUS       DATDUB010000112         2331 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_409818, whole genome shotgun sequence.
ACCESSION   DATDUB010000112 DATDUB010000000
VERSION     DATDUB010000112.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2331)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2331)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2331
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_409818"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..257)
                     /locus_tag="VJA84_02240"
     CDS             complement(<1..257)
                     /locus_tag="VJA84_02240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease domain-containing protein 2"
                     /protein_id="HLD40975.1"
                     /translation="MSVHTSQRHSISKKEINALPLKHYTGSIQVIDSDAKMRVAARSL
                     SREKVLGFDTETRPAFKKGESYSPSLIQLAAADDVYLFQIRR"
     gene            complement(335..1411)
                     /locus_tag="VJA84_02245"
     CDS             complement(335..1411)
                     /locus_tag="VJA84_02245"
                     /inference="COORDINATES: protein motif:HMM:NF024864.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1573 domain-containing protein"
                     /protein_id="HLD40976.1"
                     /translation="MKKIAWLLCGVNTRKHRINIILVAFLWMTVSAVSFAQNAVSPNA
                     GIYAKFRDRRCSDMPLDQCDCPDAREMKAYIDALVEAGLKPDEIYYKVAKRYSLALVL
                     DNQLKAQLEKRFAQEAGPKRPQIVLETTSFNFGEVNKAQGNVRTIFKLRNKGNADLVI
                     TNLRASCVCTTISLTVDKQKSPYFDNKGAPKDWKMELKPNQAGELEMVLDLAHKAVKA
                     GDLIREVMITSNDPLYPEVSAKVEAKVLETPGSQAKNEADSQFSGKLIEGVRVIELKA
                     SQYKFEPDPIVVKKGEKVRVVASSSDVTHGISIPEFKLNLAIPAGKESTAEFSADKEG
                     TFTSYCSVYCGSGHGKMQGKLIVK"
     gene            complement(1408..1746)
                     /locus_tag="VJA84_02250"
     CDS             complement(1408..1746)
                     /locus_tag="VJA84_02250"
                     /inference="COORDINATES: protein motif:HMM:NF016811.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YHS domain-containing protein"
                     /protein_id="HLD40977.1"
                     /translation="MRKEVCVIAAVSFLGFSGLSYAAMPGCGPNMRLAQAKAADEPAE
                     KQKAVDAGNKICPISQEAIDEKLKSVYEYEGKIYNFCCAMCIDDFKKDPQRYIKIVEE
                     EKQKEETVKK"
     gene            complement(1906..>2331)
                     /locus_tag="VJA84_02255"
     CDS             complement(1906..>2331)
                     /locus_tag="VJA84_02255"
                     /inference="COORDINATES: protein motif:HMM:NF012892.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation-translocating P-type ATPase C-terminal
                     domain-containing protein"
                     /protein_id="HLD40978.1"
                     /translation="KVLTRQRALLMLVQGAFIACCSLLAFSLVLFVEKEGIGRARSAA
                     FIVLACSQLFHSYNCRSMRESLFKIGILTNKKLILATTVSFVLQMAVVYVPFLQKVFK
                     TEALGVLDWVMVVVISSFPLWAMEAVKILNKKNGFLDKI"
BASE COUNT          578 a          639 c          477 g          637 t
ORIGIN      
        1 cgccttatct ggaataggta tacatcgtcc gcggcggcaa gctggatgag agacggcgaa
       61 taggattcgc ccttcttaaa agcgggcctg gtctccgtat caaaacccaa gaccttctct
      121 ctactgagag accgcgcggc cactcgcatc ttcgcgtccg aatctatcac ttggatagag
      181 ccggtgtaat gtttgagcgg cagagcgttt atctcttttt ttgatataga atgtctctgt
      241 gaggtgtgga cagacaatta aatcctcaac atatcacgcg gcctcttcta atatagaggc
      301 cgcgttcttt cgcctaataa aatttatgat tttcttactt cacaatcagc ttcccctgca
      361 tcttgccgtg gccgcttccg cagtaaacac tgcagtaaga ggtaaatgtc ccctctttat
      421 ccgcgctgaa ttcagccgtg gactctttgc cggcaggaat agccaggttc agcttaaact
      481 ccgggatgga aataccgtga gtaacatcag aagaactggc aacaacgcgc accttttcgc
      541 ctttcttgac cacaataggg tcaggctcaa acttatattg agaggccttt aattcaataa
      601 cccttacccc ttctatcaac ttcccggaga actgggagtc ggcctcattc ttggcttgag
      661 agcctggggt ttccagaacc ttggcctcca cttttgctga aacttccgga tagagcgggt
      721 cattgctggt aatcattacc tcccggatta agtccccggc cttaacggct ttatgcgcca
      781 aatctaaaac catctccagc tcacccgctt gattcggctt tagctccatt ttccaatctt
      841 tgggcgcgcc tttgttatca aaataaggac tcttttgctt atccacggtt aaagaaatag
      901 tggtgcagac gcaggaagcc cgaagattag taatcaccaa atccgcgttt cccttattgc
      961 gcagtttaaa tatcgtgcgg acattgccct gggccttgtt gacctcgccg aagttaaacg
     1021 aggttgtttc taaaactatc tgcggccttt tcggacctgc ttcttgcgca aatcttttct
     1081 ccaactgggc cttgagctga ttatccaaaa ccagggccag ggaataccgc ttggccacct
     1141 tgtaataaat ctcatccggc tttagccctg cctcaaccaa ggcgtcaata taagccttca
     1201 tttcccgggc atccgggcaa tcacactggt caaggggcat atcgctacag cgccggtccc
     1261 tgaacttggc ataaataccc gcgttgggag aaacagcgtt ttgggcaaat gaaactgccg
     1321 agaccgtcat ccacagaaaa gcgactaaaa taatatttat tctatgctta cgcgtattaa
     1381 ctccacacaa taaccaggct atctttttca tttctttact gtctcctctt tctgcttttc
     1441 ttcttctact atcttgatat atctttgggg gtctttctta aagtcgtcaa tgcacatcgc
     1501 gcagcaaaaa ttatatattt taccttcata ttcatagacg gactttaact tttcgtcaat
     1561 ggcctcttgg ctgattggac agatcttatt tccggcgtca accgcttttt gtttctctgc
     1621 cggctcatcc gcggccttgg cctgggccag gcgcatattc gggccgcaac cgggcatagc
     1681 cgcataagat aatccgctaa accctaaaaa tgaaactgcc gcaatcacac atacctcttt
     1741 tcgcattttt aaaccctcct taatgagcag ataacttaca aacttattat gggcagttta
     1801 acgtcgtgcc cgggacaacc tacggcagcc ctctttgcag tgggcaatcg gccggatcat
     1861 ccagcgcgcg ctatttcttg ccatcttcgc acccctcctt ttcttctaaa tcttatccaa
     1921 gaaaccattt ttcttgttca atatctttac cgcttccatt gcccaaagcg ggaatgatga
     1981 gatcaccacc accataaccc aatccaacac ccccagggcc tcggtcttaa ataccttctg
     2041 taagaacggg acataaacca ctgccatctg caggacaaat gagactgttg tggccaggat
     2101 aagctttttg ttagtcaata tccctatctt aaacagcgat tcgcgcatac tccggcagtt
     2161 ataggaatga aacaactggg aacaggccag gacgataaaa gccgcgctgc gcgcgcgccc
     2221 aatgccctct ttttccacaa agagcactaa gctaaaggcc agcagactgc aacaggcaat
     2281 aaatgccccc tggaccagca tcaaaagcgc cctttgtctg gttaacactt t
//
LOCUS       DATDUB010000113         3991 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_2409097, whole genome shotgun sequence.
ACCESSION   DATDUB010000113 DATDUB010000000
VERSION     DATDUB010000113.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3991)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3991)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3991
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2409097"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..571)
                     /locus_tag="VJA84_02260"
     CDS             complement(<1..571)
                     /locus_tag="VJA84_02260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020258043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal-phosphate dependent enzyme"
                     /protein_id="HLD40979.1"
                     /translation="MLPDKHGHFDGFGGRFVPEVLISALDELEKEYLKAKKDAAFQKE
                     LRYYLKSYCGRPTPLSLARNLTRLLGGKLKIYLKREDLLHTGAHKINNTVGQALLALR
                     MKKPRVIAETGAGQHGVATATVAALFGLKCEIFMGEEDIRRQELNVFRMKLLGARVIP
                     VSSGSKTLKDAMNEAIRDWATNVRDTHYII"
     gene            complement(576..1553)
                     /locus_tag="VJA84_02265"
     CDS             complement(576..1553)
                     /locus_tag="VJA84_02265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013295773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc metalloprotease HtpX"
                     /protein_id="HLD40980.1"
                     /translation="MSLFWLKLRMWLLVSILFSVLYGIIVGVGSFMRVGNFWFYLIAS
                     LGMMVIQYMIGPWLIGLMMRIKYVSQSEYPDLYRMVKDLSMRSQIPMPKIAVADMALP
                     NAFAFGRWKSDGRVCVTRGIMGLLSENELKAVLAHEISHLKNRDVLTITLLSVIPLIL
                     YRIAFQLLWYGGDNRRREGGGNAALIGMAAMVFYFITNLLVLYASRIREYFADRGAVA
                     LGSAPSSLASALYKLVYGSARADKESLRQVEGLKAFFVNDPSCALSEIKELRHLDLDK
                     SGTIDPAELAALSSKNLKLGFGERLLEVMSTHPNMLKRIKQLSSYKQGI"
     gene            complement(1822..2193)
                     /locus_tag="VJA84_02270"
     CDS             complement(1822..2193)
                     /locus_tag="VJA84_02270"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HLD40981.1"
                     /translation="MAKTILVIDDNRLSREINCSTLDSAGYKTITASEGNEGLGILRT
                     GKVDLVILDLIMPGLDGFGFLGVYKNDPQMKDIPVIVITGRDSKEEIAQVKALGAADC
                     LVKYRMSPAVFLKAVKSLLGE"
     gene            complement(2186..3586)
                     /locus_tag="VJA84_02275"
     CDS             complement(2186..3586)
                     /locus_tag="VJA84_02275"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF027971.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HLD40982.1"
                     /translation="MSVSITFCGGARTVTGSMHLIEADGERVIIDCGLFQGHRDESYR
                     INSQFCFNPALIDAAVVSHSHIDHCGNIPNLVKRGFKNKIYATRPSRDLMDLMLLDSA
                     KIQEEDIRFVNKINARKGLPLRAPLYTIEDAQRSLKKIRAVDYRKRFKLTPRIHCTFY
                     DSGHILGSAIPFLGIGLSERVIKIAYAVDLGRQDIPLLADPDILSDVDYLIIESTYGG
                     RLHKPITEAREKLAEVINRTIDRGGKVIIPAFALERTQEVVYYLGELLRQKRIKPVPI
                     YVDSPLACNITDVFLKNSASLDSEARALIENKADPFSLSSIRYIRDAQESKKLNFDKS
                     PMIIISTSGMCESGRVLHHLRNNIEDERNTILVVGYMAKNTLGKRIVEKNKSVKIFGE
                     SFVLKAQIEVINAFSANADKDDLIEYVAKTGGKMKKVFIVHGDIDQSEALALSLKVRG
                     FRPYIPKKMEKVELNG"
     gene            complement(3648..>3991)
                     /locus_tag="VJA84_02280"
     CDS             complement(3648..>3991)
                     /locus_tag="VJA84_02280"
                     /inference="COORDINATES: protein motif:HMM:NF012900.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phosphoribosylanthranilate isomerase"
                     /protein_id="HLD40983.1"
                     /translation="CKIIKAFRVKDKSSLSRLSDYHEAVDYYLFDAFSPVGLGGTGKR
                     FNWELIKMAKIDKPFFISGGLTSKNVVSAIKALNPDWVDVSSGVEKSSGIKDKKKMRN
                     FINKVKSFSYR"
BASE COUNT         1055 a         1064 c          868 g         1004 t
ORIGIN      
        1 caataatata atgggtatcc cggacattag tggcccagtc ccggatagcc tcattcatcg
       61 cgtcttttaa ggtcttgctc cctgaagata ccgggatcac cctggccccc aaaagcttca
      121 tccgaaaaac atttagctcc tggcggcgga tgtcttcttc tcccataaag atctcgcact
      181 tcaggccaaa gagggccgct acagtagccg tagccacccc gtgctggcca gccccggtct
      241 cggcaatcac ccggggtttt ttcatccgca gggccagcag ggcctggccc acggtattgt
      301 taatcttatg ggccccggta tgcaggaggt cttcccgctt aagatagatc ttgagtttgc
      361 ctcctaaaag acgggtgaga tttcgggcaa gggacaaagg ggtgggccgg ccgcaatagc
      421 tcttaagata atagcgcagt tctttttgga atgcggcatc ctttttggcc ttgagatatt
      481 ccttctccaa ctcatccaaa gcggaaatca ggacctccgg cacaaacctt ccgccgaagc
      541 cgtcaaagtg gccgtgttta tcgggaagca ttattttaaa ttccctgctt ataacttgat
      601 aattgtttga tcctcttgag catattagga tgggtgctca ttacctctaa cagcctctcc
      661 ccgaagccaa gcttcagatt cttggagctt aaggccgcca actccgcggg atcaatagtc
      721 ccggatttat ccaggtctaa gtgccgaagc tccttgattt ctgaaagcgc gcaggaaggg
      781 tcattgacaa agaatgcctt cagcccctct acttggcgca ggctttcctt atccgcccgg
      841 gccgagccat agaccaactt atacaaggcg ctggccaaac tgctcggggc gcttcccaag
      901 gccactgccc ctctatcggc aaaatattcc ctaatccgcg aggcataaag aaccaagaga
      961 ttggtaataa aataaaaaac catagccgcc atcccgatca gggcggcatt gcccccgcct
     1021 tccctgcggc ggttgtcccc gccataccac aaaagctgaa aggcaatccg atagaggatg
     1081 agcgggatga ccgaaagcag ggttatggtc aagacatccc tgttcttaag atgggatatc
     1141 tcatgggcca ggaccgcctt cagctcgttc tcgctcaaca gtcccataat cccgcgggta
     1201 acacagaccc tgccgtcaga cttccagcgg ccaaaggcaa aggcattagg cagggccata
     1261 tccgccaccg cgatcttagg catcggtatc tgggagcgca tactcaagtc cttgaccatc
     1321 cggtaaaggt cgggatattc ggactgggaa acatatttga tacgcatcat caaaccaatc
     1381 agccagggcc cgatcatata ctggatgacc atcatcccca aagaggcgat caggtaaaac
     1441 cagaaattcc cgaccctcat aaacgaccca acccccacga taatcccgta aaggacgcta
     1501 aacagtatgc tgaccaaaag ccacatccgc agtttcaacc agaataatga cattttaagt
     1561 tcctccttaa tgagcgctaa acttatggct ttggctatag gaagccaaac catggcctgg
     1621 tggccaatgg agcgagcttt agcgagcgaa cataagttta tgcgcgaatt aatcccgcag
     1681 cgtgcgaagt aaatttcgca gaaatttacg agcgcttacg caagggaaaa ccaatcgtta
     1741 ccctcacaat caaagctatt atagcagaac aaatccccat ttcaacacaa aaacgacaca
     1801 aaaactacac aaaaatggat tttattcacc caggagactt tttaccgcct ttaagaagac
     1861 tgccggggac atacggtatt ttactaagca atccgcggcg cccaaggcct tgacctgggc
     1921 gatctcttct ttggaatccc ttccggtaat cactatcacc gggatatcct tcatttgagg
     1981 gtcgttcttg tataccccca ggaatccaaa cccgtccagt ccgggcataa tcaggtccag
     2041 gatcaccaaa tccaccttac ctgttctaag tatacccaag ccttcattac cttcagaggc
     2101 ggtaatagtc ttatacccgg cgctatccag ggtagagcag tttatctccc ggcttaaacg
     2161 gttgtcgtct ataaccagaa tcgtcttagc cattcaattc caccttttcc attttcttcg
     2221 ggatatatgg cctaaacccg cggaccttta aacttaaagc cagggcctcg gactggtcaa
     2281 tgtctccgtg gacgataaag accttcttca tttttcctcc agtcttggcg acatactcta
     2341 ttaagtcatc cttgtccgcg ttggcgctga aggcgttaat cacctcaatc tgcgccttta
     2401 agacaaaact ctccccgaag atcttcacac ttttattttt ctccactatc cttttgccca
     2461 gggtattctt ggccatatag ccgactacta atatggtgtt tctttcatcc tcaatgttgt
     2521 ttctcaagtg atgcaggacc ctgccggatt cgcacatccc agaggtagag ataataatca
     2581 tcgggctttt atcaaagttc agcttcttgg attcttgggc atcccggatg taacgtattg
     2641 aggacaggct aaagggatca gccttatttt ctatcaaggc tctggcctcg gagtcaagac
     2701 tggcggaatt tttcaggaag acatcggtga tattgcaggc cagggggctg tccacatata
     2761 tggggacagg cttaatcctc ttctggcgaa gcagttctcc caggtaataa accacctcct
     2821 gggtgcgctc cagggcaaag gccgggataa taaccttgcc gcctctgtca atcgtgcggt
     2881 taattacctc ggccagtttc tctctagcct cggtaatagg cttatgcagt cttccgccgt
     2941 aggtgctttc aataatcaga taatccacat cgcttaatat atccgggtca gccaataaag
     3001 ggatatcctg acggcctaaa tccaccgcgt aggctatttt gatgacccgt tcagacaggc
     3061 ctattcctaa aaaaggtata gctgaaccta aaatatgccc ggagtcataa aaggtgcagt
     3121 gtatcctcgg agtaagctta aatctcttgc ggtaatccac cgcccggatt ttcttcaaag
     3181 acctttgggc atcctcaatg gtataaagag gagctctcaa aggcaggcct ttacgggcat
     3241 tgattttatt cacaaagcgg atgtcttctt cctgaatctt ggcgctgtct aaaagcatca
     3301 aatccatcag gtcccggctg gggcgggtgg cataaatctt gtttttaaat ccccttttta
     3361 ccaggttagg gatattcccg cagtggtcaa tatggctatg ggagactacc gcggcgtcaa
     3421 taagggcggg gttaaagcag aattgggaat taatccggta agactcatcg cgatggccct
     3481 gaaacaggcc gcagtcaata atcacccgtt ctccatccgc ctctatcagg tgcattgagc
     3541 cggtaaccgt gcgcgcgccg ccgcaaaagg taatagaaac gctcatcgta taaaccttaa
     3601 atcctaaact ctaaacaaat ctaaaattaa aaacacaaaa ctaaaaacta ccgataagaa
     3661 aagcttttca ctttattaat aaaattcctc atcttcttct tatcctttat cccggaagat
     3721 ttctctactc cgcttgagac atccacccag tccggattaa gggccttaat cgcggatacc
     3781 acatttttag aggtaaggcc gccggaaatg aaaaatggct tatcaatttt agccatttta
     3841 atcaattccc aattaaacct ttttccggtg ccgccaaggc ctacagggct aaaggcgtca
     3901 aaaagataat aatcaactgc ttcgtgatag tctgacaagc ggcttaaact gcttttatct
     3961 ttaaccctaa aggccttgat gattttacag g
//
LOCUS       DATDUB010000114         2670 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_592955, whole genome shotgun sequence.
ACCESSION   DATDUB010000114 DATDUB010000000
VERSION     DATDUB010000114.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2670)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2670)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2670
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_592955"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(89..475)
                     /gene="crcB"
                     /locus_tag="VJA84_02285"
     CDS             complement(89..475)
                     /gene="crcB"
                     /locus_tag="VJA84_02285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014067500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:1903425 - fluoride transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:1903424 - fluoride transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fluoride efflux transporter CrcB"
                     /protein_id="HLD40984.1"
                     /translation="MIKILFVLAGGGIGSLLRYGVSGVFSKTGSGFPLGTLLVNLTGS
                     FLIGLFWGVSEKAVFGNPNWKIFIFAGVLGGFTTFSAYGLESFNLLRAGKPMLALANI
                     LLSNIFGIALVGLGFLVSRYLIKHIF"
     gene            complement(526..1101)
                     /locus_tag="VJA84_02290"
     CDS             complement(526..1101)
                     /locus_tag="VJA84_02290"
                     /EC_number="2.5.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013296598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HLD40985.1"
                     /translation="MFTGIIEELGVVKGISRKGQAMLLSVQADKVLPDTKIGDSIAVN
                     GVCLTVVKIEGRLLSFDLLAETARLTNLGKLKPGEKVNLERSLKVGDRLSGHFVTGHI
                     DCLGLIRNKSHKNGNPCFEITLKPEFLKFIVPKGSVAIDGISLTVVNKHSNAFTVYVI
                     PHTLRDTTLSFKGPSSEVNIETDILAKYNNR"
     gene            complement(1141..2232)
                     /gene="ribD"
                     /locus_tag="VJA84_02295"
     CDS             complement(1141..2232)
                     /gene="ribD"
                     /locus_tag="VJA84_02295"
                     /EC_number="1.1.1.193"
                     /EC_number="3.5.4.26"
                     /inference="COORDINATES: protein motif:HMM:TIGR00326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008703 -
                     5-amino-6-(5-phosphoribosylamino)uracil reductase activity
                     [Evidence IEA];
                     GO_function: GO:0008835 -
                     diaminohydroxyphosphoribosylaminopyrimidine deaminase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     diaminohydroxyphosphoribosylaminopyrimidine
                     deaminase/5-amino-6-(5-phosphoribosylamino)uracil
                     reductase RibD"
                     /protein_id="HLD40986.1"
                     /translation="MNTPEYFMRRARDLALKAEGQTFPNPLVGALVVKGGKIIAQGYH
                     QKAGLAHAEVEALEAAGKRALGADLYVTLEPCTHYGKTPPCVDRILESGIKRVFAGMI
                     DPNPLNNGKGIKLLREHRIKTECGILEDELRKINQPFLKYITRKMPYVTVKVGQSLDG
                     KIALKTGESQWITETASREYSHSLRRLYDGIMVGVNTVIRDNPFLEGEPGRPLAKIVA
                     DSSLSTPAEANIFKKPGEVIIASLRERSGQETESRGLLFAKARILDVKENNGQLNLYD
                     LLKKLWRLGLCNILVEGGGTLIGSLFDYGLVDKVMFFIAPKIIGGKDSISSVEGRGIS
                     RLDKAVQLQDVQLKKIGDDFLIEGIIRKY"
     gene            complement(2229..>2670)
                     /locus_tag="VJA84_02300"
     CDS             complement(2229..>2670)
                     /locus_tag="VJA84_02300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="phosphatase"
                     /protein_id="HLD40987.1"
                     /translation="GHSCVGRLHLARLMVKKGFIANTQEAFNRYIGDNGPVYVSKFRL
                     KPSEAIELVIKAKGVAVLAHPYSLPNQDLIPEFIQAGLRGIEAVYPEHTSAQVERYKR
                     LAYKYGICVSGGSDCHGQAKPEVRIGMVKLPYSFVERLKEERGK"
BASE COUNT          677 a          756 c          580 g          657 t
ORIGIN      
        1 agccaagctg agccactccc cgtattttca actcataggc gaagtccgcc aatcattgtg
       61 gcggatgagc cacgccccga aatttatcct aaaatatatg ctttatcaaa tagcgagaga
      121 caaggaagcc aagaccaacc aaggctatgc caaaaatatt gcttaaaagg atattggcca
      181 gagccagcat tggtttaccc gcgcgcaaaa gattaaagct ctccaggccg taggcggaaa
      241 aggtggtaaa tcctcccaag accccggcga agatgaatat cttccaatta gggttaccaa
      301 aaaccgcctt ttcagatacc ccccaaaaca ggccgatcag aaaagagccg gtcaggttaa
      361 ccagcagtgt ccccagagga aaaccagaac cggtcttaga aaagaccccg gatacgccat
      421 acctcaataa agagcctatc ccgcctccgg ccaggacaaa caatatcttt atcatcgcca
      481 tactatacca aaaaaaacgg cctttagcaa taattgatgt ggcggttatc ggttattata
      541 tttagccagg atgtcggttt caatattcac ttctgaagac gggcctttga aactcaaggt
      601 ggtatcgcgg agagtgtggg gaatgacata caccgtaaag gcattggaat gtttgttcac
      661 cacggtcagg cttattccgt ctatggctac cgagcctttg ggaacaataa atttcaggaa
      721 ttccggttta agggttattt caaaacaggg attgccgttt ttatggctct tattgcggat
      781 aagcccaagg caatctatgt ggccggtaac aaagtggccg gagagcctgt cccctacttt
      841 cagggaccgt tctaaattca ccttttcccc gggcttcagc ttccccagat tagttaaccg
      901 agcggtttcc gcaagcaggt caaaactcaa aagcctgcct tctatcttga ccacagtcag
      961 gcagaccccg tttacggcga tactgtcgcc tattttggta tcagggagga ccttatccgc
     1021 ctggacagat aataacatgg cctgtccttt gcggcttatt cccttaacaa cccctaactc
     1081 ttcaataatc ccggtaaaca tctcaactct gttttagggc aggcacaagg cctgccccta
     1141 ctaatatttt ctaattatac cttctatcaa gaagtcatcg ccgatttttt ttaactggac
     1201 atcctgcagt tggaccgctt tatccaggcg ggatatgccc cggccctcaa ccgagctgat
     1261 ggaatcttta ccgccgataa tcttaggggc gataaaaaac attactttat ccactaatcc
     1321 gtaatcaaac aacgaaccaa tcagcgttcc gccgccttcc accaggatat tgcacagccc
     1381 caggcgccat agctttttca acaaatcgta aagattcagc tggccgttat tctcctttac
     1441 atccaaaatc ctggccttgg caaacaaaag gccccggctt tcagtctcct ggccgcttct
     1501 ttcccgcaaa gaggcgataa tcacctcccc cggcttcttg aatatattgg cctctgccgg
     1561 ggtgcttaaa gagctgtcgg ccacaatctt ggccaagggc ctgcccggct caccctccaa
     1621 aaagggattg tcccggatca ccgtattcac ccccaccatt atcccatcat aaaggcgacg
     1681 caggctatgg gaatattccc gggaggcagt ctcggtaatc cactgggact cgccggtctt
     1741 taaggcgatc ttgccgtcta aagactgtcc caccttaacc gtaacataag gcatcttgcg
     1801 ggttatatat ttcaaaaacg gctgattgat ctttcttaac tcatcctcca ggatgccgca
     1861 ttcagtcttt atccggtgtt ccctaaggag cttgatgcct ttgccgttgt ttagcggatt
     1921 agggtcaatc atcccggcaa agaccctttt tatccccgac tccaatatcc ggtccacgca
     1981 gggcggcgtt ttgccatagt gggtgcaggg ctccagggtt acataaaggt ccgcgccgag
     2041 agccctctta ccagccgcct ccagcgcctc aacttcagca tgagccaaac cggccttttg
     2101 gtgatagcct tgagcaataa tcttgccgcc cttgaccacc aacgccccga ctaaaggatt
     2161 agggaaagtc tggccctcgg cctttaaggc caaatccctt gcccggcgca taaaatattc
     2221 aggggtattc atttcccgcg ctcttccttt agcctctcca caaaactata ggggagtttc
     2281 accatcccta tcctgacctc cggcttggcc tgtccgtggc agtctgatcc gccgctgaca
     2341 catatcccgt atttataggc taatctctta tagcgctcca cctgggccga agtatgttca
     2401 ggataaaccg cctctatccc ccgcagtccg gcctggataa actccgggat caaatcctga
     2461 ttaggcaggc tatagggatg ggccaggacc gcgaccccct tggccttgat caccaactca
     2521 attgcctccg agggttttag ccggaactta gaaacatata ccgggccgtt atctccgata
     2581 taacggttaa aggcctcctg ggtattggca ataaaacctt ttttcaccat taacctggct
     2641 aagtgcagtc tgcccacgca ggaatgcccg
//
LOCUS       DATDUB010000115         4644 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1086210, whole genome shotgun sequence.
ACCESSION   DATDUB010000115 DATDUB010000000
VERSION     DATDUB010000115.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 4644)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4644)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4644
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1086210"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            99..359
                     /locus_tag="VJA84_02305"
     CDS             99..359
                     /locus_tag="VJA84_02305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40988.1"
                     /translation="MNFIETARFKKAYKSLPEEVKARVKEALRKLAGNSRYPSLQVKK
                     IKATKDIWEARVSLDYRMTFQIVRDYYILRNVGHHNPALKNP"
     regulatory      850..970
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF01051"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="cyclic di-GMP riboswitch class I; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /bound_moiety="cyclic di-GMP"
                     /db_xref="RFAM:RF01051"
     gene            1030..>4644
                     /locus_tag="VJA84_02310"
     CDS             1030..>4644
                     /locus_tag="VJA84_02310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40989.1"
                     /translation="MKPETKNKLSLWGIKGGTMPRFIFLAYVSVIRKLAETIAGALFS
                     ILVNLPKTGLKRASGVARSFVSAVEDSSCAIANWFYAAYRFFWKYVKFIPFLRNPPLT
                     KGRWGGVRRLESQTDRAILILVQLWLGLRAKIEDWFLSMRDKSRRYFRKEKLTPEALI
                     YRVSIERPPFESGFKAWIRVAAFIVVTVFLPEQVSWAIDFDWRVLWPNTASAMGLDKS
                     AFTGSSKTLAPEYVKDIYRINIPDTIKKLLLDISSKPISTIQLSPTMSIELKEPLKMS
                     KGRIEQIYNWLKGKPCGIKAFFDYLNMQGAKVEEQDIAVLALAVDILNDVVKPEGNPK
                     IIKTSLFALAKTSEFFNHKLVPVKLNNSINSTNSINSMSSITPFIAHFTAEHYVLVTR
                     LSQEKIYFIDEHQEEFLPIDKFLEDSSGYALVPASNSQLSALSLLSDEEAKSILGARS
                     YKSKYSSFSKLFKEPKRTDLYISLAITAASAGFGAAAGAGWMGSGAKTFLGSSNGFFK
                     DFAAGLATSEISKSATLIGIRNLGMNQNTAQIFGYAVGGGITGGLTGISGGGWTSKFP
                     KANAFLTSHPIVGGVAFGMLKGGAVGGGSLLGYKAIQNTSFYKNNPYIAKQVGSFLGG
                     AAGYMGFTAVASLSGFSQKITTTSSEKKDGTKTVYGKDMLSDGQNTYTGTGKAGGVPY
                     TQNGNQVTFASTPKNPFTFGQSMKLAWMDMSHDFIYQGTALATEYALSEFTDIDMKYS
                     RVLGEGVGSLASKSFSNQGWKQMMMGGAISGLASFGLNALGGEYNNKTGKNKWGMTEL
                     QMAGVNWLATAGLFSGVGSVLAKSDKWQNFLGSDNTGLWSRVLEFQISYLTWNGTSPF
                     YTHGAGGWTEVRYLEKMAEWGGYANLAANADYAMKVSGYKSWSKFVKDGRAGDLFPSI
                     ENSLVRYTASTLHYSAAENLSATMGYLPKKATDFMGIRHYEATSESTSEAIKRMEAQK
                     TKYETELKSNTLIDSQKLLYEYKIAEHNYSIAQLNKEMENEGDETHSWILAFDPGSNM
                     GSGGHGGLGGSRIIKEVYGKNQRLISMSVGIAKPFEMKTIEKRSIFDKDGKKKSETEK
                     EYLLGPEGYTSGQAKGVGEAGMGSLEIKGTGHDTYFNAINKSAEGGEWHFAVGAKRTL
                     DNGSYYTGVYTFNSAPDAPTSFDVYTKNIVTPKRFWFDKKEGIEKGRTYVIADKPIKP
                     K"
BASE COUNT         1321 a          994 c         1098 g         1231 t
ORIGIN      
        1 gaatggcaag aggcggagaa agaggccgaa gaagatatta aatccggcag ggtgaagaaa
       61 ttcaagaatg tccaggagtt gattaaggac ctggataaat gaacttcata gagacagcac
      121 gctttaaaaa ggcttataaa tctttgcctg aagaggtaaa agccagggtt aaagaggcat
      181 tgcgtaaatt ggcgggtaac tccagatacc catcacttca agtcaagaaa ataaaagcca
      241 caaaagacat ttgggaggcg agggttagcc tggattatcg catgactttt caaatcgtca
      301 gggactatta catactgcgc aacgttggcc atcacaatcc cgccctcaag aacccttaaa
      361 caattcttgt ctaccatcca aaaaggtatc attttccctt ctgattatat tgtccaattt
      421 gtatcttcat ggactataat aagttagatt gatgtccatt ttaatagtta atcggataag
      481 gtagctaaat aatgtccaat ttagcttttt taaggatgat ttaatttatc cgatcaggct
      541 gttgcgaaat tccactactg tcattgcccg cccccgcttt cgcgagggtg accgggcaat
      601 ccagatagtt ccgtctggat tcccgctttc gcgggaatga tatttcggtt tgattcttaa
      661 agctgagcta ttacattttt tgagggtatt tttttagttt ttaggtcttt cagttctttg
      721 gcatttctat ttctcggccc cgttttctgc caggcgcaaa accccttgat ggcaaaggag
      781 aaagcgcttc ctttttttac taaaaatacc cttgacagcg tatatatatt atggtatatt
      841 ttaattacaa aacgataagg gcaaacctcg agtgatcggg gggcgcaaag ccacgggtct
      901 tagaggggaa actctcgacg ataaattaaa agttttaata agaaataaat aagacggccg
      961 ggctaccgaa caggcagctc tgtctttttt atttcaacac ttagtaaaaa cttaaaaaaa
     1021 caaatttaaa tgaaaccgga gacgaagaat aaattgagtc tatgggggat aaaggggggg
     1081 actatgcccc gctttatttt tctggcctat gtctcggtaa taagaaagtt ggctgagaca
     1141 atagccgggg ctttattttc tattttggtc aacctgccca aaaccgggtt aaaaagagcc
     1201 tctggggtgg ctcggagttt tgtttcggca gtagaagatt catcttgcgc gatagctaat
     1261 tggttttatg ccgcttacag atttttctgg aaatatgtca aatttatacc attccttaga
     1321 aatcctcccc ttaccaaggg gaggtgggga ggggtaagaa gattagaatc acagacagat
     1381 agggcgattt tgattttagt ccaactttgg ttgggcttaa gagctaaaat tgaagattgg
     1441 tttttatcta tgcgcgataa atcgcgccgc tacttcagaa aagaaaaact gacaccagag
     1501 gctttgattt accgagttag catagaaagg ccgccatttg aatccggctt caaggcctgg
     1561 attcgggtcg cggcttttat tgtggttacc gtatttttac cggagcaggt ctcctgggcc
     1621 attgattttg actggcgggt gctctggcct aatactgcgt cagcaatggg gttagataag
     1681 tcagcgttta ccggctcctc taaaaccctg gctccggaat acgtcaaaga tatctaccga
     1741 atcaatatcc ccgataccat caagaagctc cttttggaca tttccagcaa gccaatcagc
     1801 actattcagc tttccccgac tatgagtatt gagctgaaag agccgctaaa gatgagcaag
     1861 ggccggattg agcagattta taactggctc aaaggcaaac cctgcggcat caaggccttc
     1921 tttgattatc tgaatatgca gggcgcgaaa gtggaagaac aggatatcgc ggtcctggcc
     1981 ctggctgtgg acattttaaa tgatgtagtc aaacctgagg gcaaccccaa aatcattaaa
     2041 acttccctct tcgccctggc caaaacctcc gaatttttca accacaagct tgttccagtc
     2101 aaactcaata actcaataaa ctcaacaaac tcaattaact ctatgagctc tataactccc
     2161 tttattgccc acttcactgc cgaacattat gttttagtaa ctcgcctaag tcaggaaaag
     2221 atttatttta ttgacgagca ccaggaagag ttcttgccga tagataaatt tttagaagat
     2281 tcttccggct atgcccttgt tccagcttcc aactctcagc tttcagctct cagcttactt
     2341 tctgatgaag aagccaagtc tattttgggc gccagaagtt acaaaagtaa gtattccagc
     2401 ttttccaagt tatttaaaga gcctaaaaga acggatttgt atatcagtct ggccataacc
     2461 gccgcctctg ccgggtttgg cgcggcggca ggtgccggct ggatgggttc cggcgccaaa
     2521 accttccttg gcagttctaa cggtttcttt aaggattttg ccgccgggct ggctacctcc
     2581 gaaatcagca aatccgctac tttaatcggt atccgcaacc tggggatgaa tcaaaatacc
     2641 gctcagattt ttggctatgc cgtaggcgga ggcataaccg gagggcttac cggtatttcc
     2701 gggggaggtt ggacctcgaa attccccaaa gctaacgcat ttttaacatc tcatcctatt
     2761 gtgggagggg ttgcctttgg tatgctcaaa ggtggagccg tcggtggagg cagcctcttg
     2821 ggctataagg ccatccagaa taccagtttt tataaaaata atccctacat tgccaagcag
     2881 gtgggttctt tcttaggcgg cgccgccgga tatatgggat ttaccgccgt tgcttcctta
     2941 tccgggttta gccagaaaat aaccaccact tccagcgaaa agaaagacgg caccaaaacc
     3001 gtatacggaa aagatatgct ttccgacggc cagaatacct acacaggcac aggcaaggcc
     3061 ggaggggttc cttatactca aaacggaaat caggttactt ttgcctctac tcctaaaaat
     3121 ccctttacct ttggccagtc tatgaaatta gcctggatgg atatgagcca tgattttatc
     3181 tatcagggca cagccttagc cacggaatat gccttaagcg agtttacgga tatagatatg
     3241 aaatattccc gagtgctggg tgagggggtg ggaagcctgg cctcaaagtc ttttagcaat
     3301 caaggctgga agcaaatgat gatgggcggg gctatttcgg gtttggcttc tttcgggctc
     3361 aacgccttag gcggagaata taataataag accgggaaaa acaagtgggg gatgactgaa
     3421 ctgcagatgg ccggggtgaa ttggctggct actgccgggc ttttctccgg cgtgggaagc
     3481 gtattagcca aaagcgataa atggcagaat ttcttaggta gcgataacac cggtttatgg
     3541 agccgggttt tagaatttca aatcagctat ctcacctgga atggcacctc gcccttttac
     3601 acccacggcg ccggcggctg gaccgaggtg cgctatctgg agaaaatggc cgaatggggc
     3661 ggatatgcca atttggccgc taatgccgac tacgcgatga aggtctccgg atacaaatcc
     3721 tggagcaaat tcgttaagga cggcagggcc ggagacctct ttccttctat tgaaaattct
     3781 ttagtccgct acaccgcttc caccctgcat tattccgccg ccgaaaatct cagcgccacc
     3841 atgggctacc tgcccaagaa agccacagat tttatgggca ttaggcatta tgaggctact
     3901 tctgagtcta cttctgaggc aataaaaagg atggaagcgc agaaaactaa atatgaaacc
     3961 gaacttaaat ccaataccct cattgattca cagaagttgc tttatgaata taaaatcgcg
     4021 gagcataact atagtattgc tcaattaaat aaagaaatgg aaaatgaagg cgatgaaact
     4081 catagttgga tattggcttt tgacccaggc agtaatatgg gttccggcgg acatggcggt
     4141 ttaggcggca gccgaatcat taaagaggta tacggtaaaa atcaaagatt gatttcaatg
     4201 tccgttggta ttgctaagcc ttttgaaatg aaaactattg aaaagagaag tatatttgat
     4261 aaagacggca agaaaaaatc cgagactgaa aaggaatacc ttcttggtcc ggaaggttat
     4321 acctctggtc aggcaaaagg tgttggggag gcaggaatgg gcagcctcga gataaaaggc
     4381 acagggcatg atacctattt caatgccatt aataagtcag ctgagggtgg ggaatggcac
     4441 ttcgctgtag gagccaagcg gacactcgac aacggttctt attataccgg agtttatact
     4501 tttaacagtg ccccggacgc gcctaccagc tttgacgttt ataccaaaaa catagtaacc
     4561 cccaaaagat tctggtttga caagaaagaa ggtattgaga agggccggac ttatgttatc
     4621 gctgataagc ctatcaagcc aaaa
//
LOCUS       DATDUB010000116         2556 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1745399, whole genome shotgun sequence.
ACCESSION   DATDUB010000116 DATDUB010000000
VERSION     DATDUB010000116.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2556)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2556)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2556
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1745399"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            91..1086
                     /locus_tag="VJA84_02315"
     CDS             91..1086
                     /locus_tag="VJA84_02315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007221562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HLD40990.1"
                     /translation="MELRSPLFILLFIPAFLILFYARKNDKGGAISFSWGGLFQGLRE
                     TFKLKLTRNILFLRLAGLILIILALSRPLSPAADSKIESEGIDIVLALDCSTSMLAED
                     FKLAGARRNRLDVVKDVVKDFVRARKSDRIGIIAFAARAYTVCPLTLDYGWLLENLSR
                     VQTGLIEDGTAIGSGLGSSLNRLKDSKAKSKVVILLTDGRNNTGDISPSTAAEAAMAL
                     KIKVYTIGAGTKGLAPYPVKDFFGNTAYQSIEIDIDEDTLKGIADKTRGRYFRATDTE
                     SLREIYKEIERMEKTKIEEKGFLEYNELFPYFLIPGAVLLLLEIILNNTVFRRIP"
     gene            1246..2322
                     /locus_tag="VJA84_02320"
     CDS             1246..2322
                     /locus_tag="VJA84_02320"
                     /inference="COORDINATES: protein motif:HMM:NF012321.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HLD40991.1"
                     /translation="MRFGEGNYLWCAFFTAIGLGIFYLWAYRSRRGVLEQVVEKALLK
                     DLLSSLDSRRQYLKSFLFGLGLVLCVLSLARPQWGFQWKEVKRKGLDILIALDTSKSM
                     LAQDLKPSRIERSKLAIRDFVKYLKGDRIGLIAFSGSAFLQCPLTVDYGGFLLSLESL
                     DTDIIPKGGTNLASAISEAIRSYSAGQRAAVGLPIAQAGGQKKYKVLVIITDGEDHKG
                     NALSAAEEARKEGIAILCVGIGSREGELIPLKTQDGQIRFLKDRQGNVVKSRLDESIL
                     QKIALATAGSYVRATGAEFGLELLYRQRLSKLEKRELEGKLAKHYEERFQIPLALAFL
                     LLLLEPLVSEKLKVMTNDKIKSTK"
BASE COUNT          642 a          552 c          684 g          678 t
ORIGIN      
        1 atttagttaa gtttgccaag tataccccgg agagccggga aatagatttg gtgtgggagt
       61 cagcctgcaa cttcatccgt cagactaaag atggaactgc gtagcccgct ttttatcttg
      121 ctctttatcc cggcctttct aattcttttc tatgcccgga aaaatgacaa aggcggggcg
      181 atctcttttt cttggggcgg gctttttcag ggtttaagag aaacctttaa attgaaactc
      241 acccggaata ttttgttctt gaggctggcg ggtttaatcc tgattattct cgcgctatcc
      301 cggccgctgt ctccggcagc cgactctaag atagaatccg aggggataga tattgtcctg
      361 gcgcttgatt gctctaccag catgctggct gaagacttta aattggccgg ggccaggcgc
      421 aaccgcttag atgtggtcaa ggatgtggtc aaagactttg ttagggccag gaaaagcgac
      481 cgcatcggga taattgcctt tgccgccagg gcctataccg tctgcccctt gaccctggat
      541 tacggctggc tcttagagaa cctctcccgg gtccagaccg gattgattga agacggcacg
      601 gccattggaa gcggcctggg gtcttcttta aaccggctta aagattctaa ggcaaaaagc
      661 aaggtggtca tcctgcttac cgacggccgc aataacaccg gggatatctc tccctctacc
      721 gcggctgaag cggccatggc tttgaagatt aaagtttata ctatcggcgc cgggaccaaa
      781 ggcctggccc cttatccggt taaggatttc tttgggaata cggcttatca gtccatagag
      841 atagatattg atgaagatac cttaaagggc atcgcggata agacccgggg ccgttatttc
      901 cgggctacgg ataccgagag tttaagggaa atctacaagg aaatagagcg gatggaaaag
      961 acaaagattg aggagaaggg cttcctggag tataatgaat tatttcctta ttttttgatt
     1021 ccgggagcgg ttttattgtt gttagaaata attttaaata acacagtttt caggagaata
     1081 ccttgatatt gttacatgtc attgcgagcg aagcgaagca atctcacaag ccagagggcg
     1141 gtggtttgcc ttccgatagg caaagccaaa atcgtgattg cttcgtcgct ctcgctcctc
     1201 gcaatgacag ggcactcccg aaagttgatg actgacagtt gaaaaatgcg ttttggagag
     1261 ggaaactatc tttggtgcgc ctttttcacg gccataggcc tggggatatt ttatctttgg
     1321 gcttatagat ccaggcgcgg ggttttagag caggtggtag agaaggccct gctcaaggac
     1381 ctgctttctt ctctggattc gcgcaggcag tatctcaagt cttttttatt tggcctgggg
     1441 ctggttttgt gcgtcttaag cctggcccgc ccgcagtggg gattccagtg gaaagaggtg
     1501 aagagaaaag gcttagacat cctgatcgcc ctggatacct ctaagagtat gctggcccag
     1561 gacctcaagc cttcccggat agagcgctct aaattagcca tccgggattt cgtgaaatat
     1621 cttaaaggcg accggatagg gctgattgcc ttttccggaa gcgccttttt gcaatgccct
     1681 ttaactgttg attacggtgg tttcctgctt agcttggaga gtcttgatac ggatattatc
     1741 cctaagggcg gaacaaacct tgccagcgct atatccgagg caatacgaag ctattccgct
     1801 ggccagaggg ccgcggttgg gcttcctata gcccaagccg gcggtcagaa gaaatacaag
     1861 gtcttagtga taattaccga cggtgaggat cataaaggta acgctttatc cgccgccgag
     1921 gaggccagga aagaggggat agctatttta tgcgtcggca taggcagccg ggaaggagag
     1981 ttgatcccgc ttaagacgca agacgggcaa atccggtttc taaaggaccg gcaggggaat
     2041 gtggttaaga gccggctgga tgagtctatt ctgcagaaga tagccctggc tacggcgggc
     2101 agttatgtcc gcgctaccgg cgcggagttt ggccttgagc tgttataccg gcagaggctg
     2161 tctaagttag agaaaaggga gctggaggga aagctggcca aacattatga ggagaggttt
     2221 cagatacctt tggccctggc ttttttattg ctcctgcttg agccgctggt aagtgaaaag
     2281 ttaaaagtga tgacaaatga caaaattaaa agcacaaaat aaatctaaaa attcaaaata
     2341 tcaaaacggg tttagatatt tgcgctttgg atttattttg aattttatgc tttgacattt
     2401 gtcattaaat taaatcattg ctgtccaaat tagccgctgt cattcccgcg aaagcgggaa
     2461 tccacgacga gactattttc tggatacccg ctttcgcggg tatgacaaat tcgatatctc
     2521 aaaacatatt tctcgtcgat aagtaatagc taattt
//
LOCUS       DATDUB010000117         3463 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1262559, whole genome shotgun sequence.
ACCESSION   DATDUB010000117 DATDUB010000000
VERSION     DATDUB010000117.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3463)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3463)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3463
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1262559"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..797)
                     /locus_tag="VJA84_02325"
     CDS             complement(<1..797)
                     /locus_tag="VJA84_02325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40992.1"
                     /translation="MLKKIVFALAFVAAALGAAILSGPALADEPPPCPPECLTDTLEI
                     VTWYPSPYSEYEELRLYPKWTYSPCDDNSRGLIYYDNNNTPQDSDDKLMVCRGAELGW
                     REAGYWKLADSGTDDISYALNGNVGIGTVSPSAKLDVAGGVKIGSDSGVCDSTKGGTI
                     RYNNADGCLEYCDGVNLAWSSVDSSCPFIPITCVSGSQDFLTPGVYSLDIDDTTKGCK
                     FTFTIKGGGGASSGGPNGGLGGGIIIRNIEIPQTGTHSFGILVGAKG"
     gene            complement(935..2014)
                     /gene="recA"
                     /locus_tag="VJA84_02330"
     CDS             complement(935..2014)
                     /gene="recA"
                     /locus_tag="VJA84_02330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014079938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008094 - ATP-dependent activity, acting
                     on DNA [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0009432 - SOS response [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HLD40993.1"
                     /translation="MVQDKKIIPETPSPAKKEDNANRLKALELAITQIEKQFGKGSIM
                     KLSSSVNLDIPAISTGALSLDLALGIGGLPRGRVVEIFGPESSGKTTLTLSVISQVQK
                     TGGTAAFIDAEHAFDAIYAKKVGVNLDELLISQPDTGEQAMEIAETLVRSNAVDLIVV
                     DSVAALTPRAEIEGDMGDSHMGLQARLMSQALRKLTAAISKSKTCVIFINQLREKIGV
                     MFGNPETTPGGRALKFYSSVRIDLRRKEQIKSGDVVIGNLVKARVVKNKVAAPFREAE
                     FEILFNEGISRPGNILELANVMEIIQKSGSWFSYNNEKIGQGKEQTVQYLKANPKVLN
                     ELEAKVRAQSQKQKAENEAQTAKKS"
     gene            2137..3318
                     /locus_tag="VJA84_02335"
     CDS             2137..3318
                     /locus_tag="VJA84_02335"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:NF013736.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0052621 - diguanylate cyclase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sensor domain-containing diguanylate cyclase"
                     /protein_id="HLD40994.1"
                     /translation="MLNLMDMDTEYIKDDLQKARRELSLLYEISNAMHTTLKLDEILY
                     IILTAVTAHVGLGFNRAMLFLVNDNEGILEGKMGIGPDSGEEANRIWTHLEREKVDLE
                     DLINNYKTTSNQLANSQLNSFVKGIRLSLREEKGGVLAMTLLDGMPLHFTSETAQTPK
                     QDALIGILKPEEFLTVPLKAKDKIIGVLFADNPYTHRPITSDDIRVLTMFANQAGLAI
                     ENSRLYEQTLIKSRTDSLTNLWNHGYFQYRLQEEISLSQKTGQPLSVIMADIDNFKIY
                     NDTFGHQRGDQALVQVAQLLKSAARKQDSLYRYGGEEFALLLVETDKKEAYRIAEELR
                     QTVERYDFPQKEILPDKKLTISLGLAAFPDNAQTKDPLLTYADKALYEAKHQGKNRIR
                     G"
BASE COUNT          846 a          921 c          793 g          903 t
ORIGIN      
        1 caaccctttg cgccgaccaa aattccaaag gaatgtgttc ctgtttgagg gatttcaata
       61 tttcttatta ttattccccc accaagacct ccatttggac ctcctgatga agcgcctccc
      121 ccacctttta ttgtaaaagt aaatttacac cctttcgtag tatcatcaat atctaaagaa
      181 tacactccgg gtgttaaaaa gtcttgagaa ccagatacac atgtaattgg tataaatgga
      241 cacgaagaat ctacggatga ccaagccaag ttaaccccat cacaatactc caaacaacca
      301 tccgcgttat tgtagcgaat agtccctcct tttgttgaat cacatacgcc actgtcgctg
      361 ccaattttta cccctcccgc cacatctaat ttcgcgctcg gacttaccgt cccgatgccc
      421 acgttgccgt ttaaggcgta actgatatcg tctgtgccgc tatccgctaa cttccaataa
      481 ccggcctccc tccagcccag ctcggcccct ctgcaaacca tcagcttatc gtctgaatcc
      541 tggggagtat tattattgtc gtagtagatc aaacccctgc tgttatcatc acagggagag
      601 taggtccatt tcggatacag ccgcagttcc tcatactcgc tgtagggcga agggtaccag
      661 gttacaatct ccagggtgtc ggttaggcac tccggagggc agggcggcgg ctcatcggcc
      721 agggccggcc ccgataatat agccgcgccc agcgcggccg ctacgaaggc taaagcaaaa
      781 acgattttct tcagcatctt tctctccctt tgaaaattag caacacctta tgctaggcct
      841 gggggccagg cctcccgcgc gcagatgcgc aggcggattc cataatgcgc caatccaggc
      901 ttttagcggg gtatgactgt ttcactcttt gccactaact ttttttggct gtctgcgcct
      961 cgttttcggc tttttgtttc tggctctggg cgcgcacctt ggcctctaat tcattcaata
     1021 ctttaggatt ggcttttaga tactggactg tctgttcttt gccctggccg attttctcat
     1081 tgttatagga aaaccaggag ccggacttct ggattatttc cataacgttg gccaactcca
     1141 ggatattgcc gggccgggag atgccttcgt taaagagtat ttcaaactcc gcctcccgga
     1201 aaggcgcggc caccttgttt tttaccaccc tggctttcac taagtttccg attactacat
     1261 ctccgctctt aatctgttct ttcctgcgta aatcaatgcg cacggaggaa tagaatttta
     1321 aggccctgcc tccgggggtg gtttcgggat tgccgaacat caccccgatt ttttcccgca
     1381 gctggttgat aaaaatgacg caggtcttgg acttgctgat ggccgcggta agttttctta
     1441 aggcctggga catcaggcgg gcctgcaggc ccatatggct gtctcccata tctccttcaa
     1501 tttcagcccg cggggtgagg gcggccacgg agtcaaccac aatcagatcc acggcattgg
     1561 aacggaccag ggtctcggct atctccatag cctgttctcc ggtatccggc tgggagatca
     1621 gcagttcatc taagttaacc cccaccttct tggcgtaaat agcgtcaaag gcatgctcgg
     1681 cgtcaataaa ggcggcggtg ccgcctgttt tctgcacctg ggaaatcacg cttaaggtca
     1741 gggtagtctt tcccgaggat tccgggccga atatctctac tacccttccc ctgggaagcc
     1801 cgcctatgcc taaggctaaa tctaaagaca gcgccccggt agagattgcc ggtatatcca
     1861 gattaaccga gctggaaagc ttcataattg agcctttgcc gaattgtttc tcaatctggg
     1921 taatcgccaa ttccagggcc ttcaggcggt tggcattatc ttctttcttg gctgggctgg
     1981 gggtctccgg tataattttt ttatcttgga ccatttgatt tcctccatgc tatgctattt
     2041 ttctatcttg ggcaggcaca aggcctgccc ctactattga cctttaatta tatctaacaa
     2101 cccccttcaa gtcaagcttg actttttcta ttttttatgt taaatttaat ggatatggat
     2161 acggaatata ttaaagacga tttgcaaaag gcccgcaggg aattatccct gctttatgag
     2221 atctctaacg ctatgcacac caccctcaag ctggatgaga tcctctatat tatcctcacc
     2281 gcggttaccg cccatgtggg tttaggtttt aaccgggcaa tgctctttct ggttaatgac
     2341 aatgaaggga ttttagaggg aaagatgggg attggcccgg acagcggcga agaggccaac
     2401 cggatctgga cccatcttga gagagaaaag gtggatctgg aggatttgat taataattat
     2461 aagactacct ctaaccagct ggccaacagc cagttaaata gctttgtaaa aggcattcgt
     2521 ctttccctgc gggaagaaaa aggcggggtc ctggcaatga ctctcttaga cggtatgccc
     2581 ctgcatttta cctctgaaac cgcccaaacc cccaaacaag acgccctgat cggtatctta
     2641 aagccggaag agtttcttac cgttccttta aaggccaagg ataagattat cggggtgctt
     2701 tttgccgata acccttatac ccaccgccca ataaccagcg atgacatccg ggtgctgacg
     2761 atgtttgcca accaggccgg cttagccatt gaaaactccc ggctctacga gcagaccctg
     2821 attaaaagcc gcaccgacag cctgaccaat ttgtggaacc acggatattt tcaataccgc
     2881 ctccaggagg aaatcagctt aagccaaaag accggacagc ccttaagcgt tataatggcg
     2941 gatatagata attttaagat ttacaacgat accttcggac atcagagggg cgaccaggcc
     3001 ctggtccagg tggcccaatt attgaagtcc gcggccagga aacaggactc gctctatcgc
     3061 tacgggggtg aggaatttgc cctgcttttg gtggagacgg ataagaaaga ggcttataga
     3121 atcgctgaag aattaaggca gacggtagaa agatacgatt ttccccagaa ggaaatcctt
     3181 cccgataaga aactgaccat aagcctgggc cttgccgctt tcccggacaa cgcccagacc
     3241 aaggaccccc tccttaccta cgccgacaag gccctctacg aggccaaaca ccaaggcaaa
     3301 aaccgcatcc gcggctaatg ataatccgat ggaccgctac catattatca cagacatgtc
     3361 taaattatga cattgtctct gacggaaaca ctatttcgag attcgatttt taaagtgtca
     3421 ttgcgagcga agcgaagcaa tctcttgcga cgggattgct tcg
//
LOCUS       DATDUB010000118         3421 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_596335, whole genome shotgun sequence.
ACCESSION   DATDUB010000118 DATDUB010000000
VERSION     DATDUB010000118.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3421)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3421)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3421
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_596335"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..477
                     /locus_tag="VJA84_02340"
     CDS             <1..477
                     /locus_tag="VJA84_02340"
                     /inference="COORDINATES: protein motif:HMM:NF028456.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase C-terminal domain-containing
                     protein"
                     /protein_id="HLD40995.1"
                     /translation="KSFRLQMGDLEQLNKELQKKYARIKAKEQIARGLFLDDAQIILV
                     AYGTMARMAKDAVNALREQGFKAGLLRPISLWPFPGDAFKQITEELKNRRTEEPKNKR
                     TKKRILVVEMSYGQLVEDVRLAVNGRLEVNFLGRSGGGVLSPEEIAAKAKGLLENE"
     gene            470..1204
                     /locus_tag="VJA84_02345"
     CDS             470..1204
                     /locus_tag="VJA84_02345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006425316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
                     /protein_id="HLD40996.1"
                     /translation="MNEQKVFGPSRSLRGTETHYCPGCGHGVIHRLVAEVIDELDIRE
                     SVIGITTIGCAVVAYDYWDFDCIESPHGRGLAVATAVKRVRPQNIVFTYQGDGDLAAI
                     GAGETIHAANRGENVTVVFVNNSVYGMTGGQMAPTTLIGQRTPTTPGGRSVQAEGYPL
                     KISEMIAHIDGASYVERCACDSPKGILKSRGAIKAGFLNQTRNKGFSFIEILSACPTY
                     WNLSPVESMDWMKNALIKEFPLGRLK"
     gene            1201..1731
                     /locus_tag="VJA84_02350"
     CDS             1201..1731
                     /locus_tag="VJA84_02350"
                     /inference="COORDINATES: protein motif:HMM:NF013707.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:acceptor oxidoreductase family
                     protein"
                     /protein_id="HLD40997.1"
                     /translation="MTEKIIISGFGGQGIMFLGKLLALAAMRQGMFVTFLPAYGAEVR
                     GGASYCSVIISDKEIASPCVEKADTLIAMNAPSLEKFSSWTREGADVFANSSMLNGLK
                     LTKSLKWHLVPFTDIALKAGNVKSANMAALGAYLACKEIIPLKNVLKLLPDFLKNNKE
                     LIKLNEKAIEEGLKKW"
     gene            1725..3011
                     /gene="gltX"
                     /locus_tag="VJA84_02355"
     CDS             1725..3011
                     /gene="gltX"
                     /locus_tag="VJA84_02355"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012548798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009332 - glutamate-tRNA ligase complex
                     [Evidence IEA];
                     GO_function: GO:0004818 - glutamate-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HLD40998.1"
                     /translation="MVRVRFAPSPTGNLHIGGARTALFNWLYARAKGGKFVLRIEDTD
                     LVRSKKEFLDEILNSLKWLGLEWDELYHQSERFQIYRDYANQLLSKGLAYKDGEAIIF
                     KVQPGKIQIQDLIRQEPIEFDTAVIKDQVLIKSDLSPTYNFACVIDDALMNITHIIRG
                     DDHISNTPKQVILYQALGLPLPAFAHLPLILGTEGGRLSKRTGATAISDYRKMGYLAP
                     ALTNYLLLLGWSPGADQEIIALKEAAGKFDIKDANKTAAAFNLEKLNWINAQYIRGLP
                     DDSLAELLRPLAEEKGCLGDNFDRNYFISVVKLFKERINVLNDFSDYSDFFFKEEIDL
                     TPEAQKKLQAKDYSGEFKLLIERMDSLEAFNHPAIEQAFRGLVAELGIKTGELVHPVR
                     AALTGKTVGPGLFELMEVLGKERIARRLNKFIKGGI"
     gene            3008..3181
                     /locus_tag="VJA84_02360"
     CDS             3008..3181
                     /locus_tag="VJA84_02360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD40999.1"
                     /translation="MRKTILFLLSLVFLSLSAGCNTLKGAAKGAAEGLGKDASAVWQK
                     SKKADAWLQDNAW"
BASE COUNT          873 a          759 c          963 g          826 t
ORIGIN      
        1 aagtcctttc gcctgcagat gggggatctg gagcaattaa ataaggaact gcagaaaaaa
       61 tatgcccgga taaaggccaa agagcagatt gcgcgggggc ttttccttga tgacgcccag
      121 attatcctgg tggcttacgg gactatggcc cggatggcca aagacgcggt caatgcctta
      181 agggaacaag gctttaaggc ggggttactg cgtccgataa gtttatggcc ttttccaggg
      241 gatgctttta aacagataac ggaagaactg aagaaccgaa gaactgaaga accgaagaac
      301 aaaagaacaa aaaaacgaat actggtagta gaaatgtctt atggccagct ggtggaagat
      361 gtgagattgg cggttaatgg caggttagag gttaattttt tgggccgctc cggaggaggg
      421 gtactctctc cggaggagat tgccgccaag gcaaaagggt tgctggaaaa tgaatgaaca
      481 gaaggttttt gggcccagcc gcagtctgcg cggaacggaa acccactatt gccccggatg
      541 cgggcatggg gttatccatc gtctggtggc ggaagtgatt gatgagctgg atatccggga
      601 gtcggttatc gggattacca ccataggttg cgcggtagtg gcttatgact attgggattt
      661 tgactgtata gaaagtccgc acggaagggg gctggcagtg gccaccgcgg taaaaagggt
      721 gcggcctcaa aatatcgtct ttacttatca gggagacgga gatctggccg ctatcggcgc
      781 cggggaaacc atccacgcgg ctaatcgggg cgaaaatgta accgtggtct ttgtcaataa
      841 cagcgtttac gggatgaccg gaggccagat ggcccccact accttgattg gccagcgcac
      901 cccgactacc ccaggcgggc gctctgtcca ggctgaaggc tatcctttaa agatatccga
      961 gatgattgcc catattgatg gagccagtta tgtggaacgt tgcgcctgcg actccccgaa
     1021 agggatacta aaatcccggg gagcaatcaa agctggtttc ttgaatcaga cgcgaaataa
     1081 agggttttct tttattgaga tcctttccgc ctgtccgacc tattggaatt tatccccggt
     1141 tgagtctatg gactggatga agaacgcgct gatcaaggaa tttcctttgg gaaggctgaa
     1201 atgaccgaaa agataatcat cagcggtttc ggcggccagg ggattatgtt tctgggcaag
     1261 cttctggctt tagcggcaat gcgccaggga atgtttgtca cctttttgcc ggcttacggg
     1321 gccgaggtgc gcggcggggc gtcgtattgt tcggtgatta tctcggacaa ggaaatagcc
     1381 tctccctgcg tagagaaggc ggataccttg attgctatga acgcgccgtc tttagagaag
     1441 ttttcctcct ggacccgcga aggcgcggat gtctttgcca acagttcaat gcttaacggg
     1501 ctaaaattga ccaagtccct gaaatggcat cttgtccctt ttaccgatat cgcgcttaaa
     1561 gcggggaatg tcaagtcggc aaatatggcg gctctggggg cgtatcttgc ctgcaaggaa
     1621 atcattccct taaagaatgt ccttaagctg ctgccggact ttttaaagaa caataaagag
     1681 ctgataaaat taaacgaaaa agctatagag gaaggattaa aaaaatggta agagtgagat
     1741 tcgcccccag ccccacgggg aacctgcaca tcgggggggc gcgcaccgcg ctgtttaact
     1801 ggctgtatgc ccgcgccaag ggcgggaagt ttgtcttgag gattgaggac acggacctgg
     1861 tccgttccaa gaaggaattc ttagatgaaa tcttaaacag cctgaagtgg ctgggcctgg
     1921 agtgggatga gctctatcat cagagcgaaa ggttccagat ttaccgggat tacgccaatc
     1981 agcttttgtc taaagggctg gcctataagg acggagaggc tattatcttt aaggtccagc
     2041 cggggaagat tcagattcag gatttgattc gccaggagcc gattgaattt gataccgcgg
     2101 tgattaagga ccaggtcctg attaagtctg acttaagccc tacctataat tttgcctgtg
     2161 tgattgacga tgctcttatg aacatcaccc atattatccg aggggacgac catatctcta
     2221 atacccctaa acaggttatt ttgtatcagg ccttaggcct gcctttgcct gcctttgccc
     2281 atctgccatt gatcctgggg acagagggcg gccggctctc caagcgcacc ggggccacgg
     2341 cgatcagcga ttatcgtaaa atgggctacc tggcccccgc cctcaccaat taccttttgc
     2401 ttttaggctg gtctccgggc gcggaccagg agatcatcgc cttaaaagag gcggcaggga
     2461 agtttgacat caaagacgcc aataagactg ccgcggcttt taatttagag aagctgaatt
     2521 ggataaacgc ccagtatatc cgcgggctcc cggatgattc tcttgccgaa ttgttaaggc
     2581 ctctggccga ggagaaaggg tgtctggggg ataattttga tagaaattat tttatttctg
     2641 tagtaaaatt gttcaaagag cgcatcaatg tgttaaacga ttttagcgat tacagcgatt
     2701 ttttcttcaa ggaagagatt gatctaaccc ctgaagccca aaagaagctc caggccaagg
     2761 attattccgg agagtttaag ctgttgattg agaggatgga ttccctggag gcttttaatc
     2821 atccggctat cgagcaggcc tttagaggct tagtcgcgga attagggatc aagaccggag
     2881 agctggtgca tccggtcagg gccgctttaa ccggcaagac cgtcggcccc gggctgtttg
     2941 agctgatgga ggtcctgggc aaggagagga tcgcgcggag attgaataag tttattaaag
     3001 gaggcatatg agaaaaacca tcctgtttct attgtcactt gtctttttga gtctctccgc
     3061 gggctgcaac actctcaaag gcgcggccaa aggcgcggca gagggacttg gcaaagatgc
     3121 cagcgccgtc tggcaaaaat ccaaaaaggc cgacgcttgg ctgcaggaca acgcctggta
     3181 agaccaaaat ccgcctaaat ttctgccctg tcgtccctgc ctaccggtga ggcaggtaat
     3241 cggctggatt tcagattctc ctataactat tggtagcata agttagttat gataagatgt
     3301 aatctcagac atgtctaaat tatgacattg tctctgacgg aaacactatt tcgagattcg
     3361 atttttaaag tgtcattgcg aggcacgaag tgccgaagca atcccgtcgc aagagattgc
     3421 t
//
LOCUS       DATDUB010000119         4525 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_597241, whole genome shotgun sequence.
ACCESSION   DATDUB010000119 DATDUB010000000
VERSION     DATDUB010000119.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 4525)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4525)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4525
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_597241"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..232)
                     /locus_tag="VJA84_02365"
     CDS             complement(<1..232)
                     /locus_tag="VJA84_02365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008631307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HLD41000.1"
                     /translation="MKKKVGGYNKLLSIKQLKKGGMIPMLNRKSGFTLVEIMIVVAII
                     ALLAAVAIPNLLGAKKSANQAAAKANTKTLCTE"
     gene            complement(602..2689)
                     /locus_tag="VJA84_02370"
     CDS             complement(602..2689)
                     /locus_tag="VJA84_02370"
                     /inference="COORDINATES: protein motif:HMM:NF013862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HLD41001.1"
                     /translation="MDHINLTAKKDQDKAFIINYAPIFARLSPLEKDLITQRSKVVEY
                     AKDDHIYRQGGPPSAFYCVISGRVRVYIGEETMEYLNCGRYFGMISTLLGESHSVSVQ
                     AASDAKILEIPQEDFKIILNKAPKLAVDLSHTLSRRLKKKDRLEKKVFESRIISVFGI
                     NLGRDFVMTYAVNLSLSLKKETGRRILLINVIDRPEYACQDFGLSIRVEYSEPAAVPV
                     LRLDAMDMQGAPLAPFVFEDISGVSIINVLYDSADISYASRFSGLLAYFSGTYHYLVV
                     ELPAVLNDAVFGMLNQTDIIYLASACGEPSLKNTRAMLFELFQKINSPQEKIRLILQE
                     ESAQKAVSYEEAFDLLNYPVSATLPFLNEAYTSANKSKRVVKEHPEIEYSRAIRRLSR
                     ELGGIRLGLAMGGGAAFGLAHIGIIKVLEKENIPIDMVSGTSMGALVGAMWACGIDSR
                     GLEEIFLEYNNNRKKTYGLLMDLYLHKMSIAKGNKIRRFLTKHIGEKTFQDVRFPFRV
                     VACNLTKRKEVVFSSGKIVDAVMASIAIPGVFAPTISAGDLIIDGGILEPVPVGTLVK
                     AGINKIIAVNVLPSSQDISRSYEFNRRRQEEERNKAYSGSPWDRVFYNARMFFNRAFF
                     PNVLDIIVNSMQMMEYAIAESDCQKADVLISPVAEGVDWFDFFKVEGLIKKGEEDAIK
                     ALPAIKKVLSERI"
     gene            complement(2705..>4525)
                     /locus_tag="VJA84_02375"
     CDS             complement(2705..>4525)
                     /locus_tag="VJA84_02375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006341365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HLD41002.1"
                     /translation="KLASLELAEASREKEWNYPSFVREIFHGKLRWDLIYPFPDQSEA
                     YKKIGTEYQEKLRAFLSAQLDPDEVDRTGEIPDKVIKGLADLGAFAMKIKPEYGGLGL
                     NQVNYNRAMHLIASYCGSTTVLLSAHQSIGVPTPLSYFGTEEQKKKYLPRFRKGAISG
                     FALTEPTAGSDPRTMKTTAIPAEDGSHYLINGEKLWISNGNIADILIVMAHTPAKIEK
                     GKEKKRITAFIVETDTPGFEAAYHCSFMGLHGVKLGLLKFNNVKVPKENILGAEGEGL
                     KIAFVTLNTGRLTIPAATAGMSKWCLSVARKWSKERKQWGLPIGEHEGVAVKLSDMAA
                     NTLAIDALTWLSSHMADAKKLDIRLEAAMAKMFCAEMSWKVIDDTLQIRGGRGYESAA
                     SLKGRGEPGYAVERMFRDARINLIIEGTSQIMRLFIAREALDPHLRRMLAVMGGKTPF
                     LKRIGLAVSTGIFYAFWYLRMLAPCCRARRFKDLPSKLQRHLLFAQNASKRLARVIFL
                     NMLIHQQKLESRQNTLNRFVDIGAELFVISAVCSYSQARAKESNNSSIDLADLYCRQA
                     RTRIAQNFQGLARNQDKIASRLAKKLLAGEYEWMEKEIII"
BASE COUNT         1073 a         1262 c         1010 g         1180 t
ORIGIN      
        1 actccgtgca cagggtcttg gtattggcct tggccgcggc ctggttagcg ctctttttgg
       61 cccccaacaa attgggaata gccactgccg ctaataaagc aataatggcc accacgatca
      121 taatttccac taaggtaaaa ccgctttttc tgtttaacat aggaatcatt ccccctttct
      181 ttaactgctt aatagataat aatttattat atcctcccac cttcttcttc accccctttc
      241 ttttatagct tttattttaa actataaatg ccttttgtca acataaaagc ctaaggccga
      301 cgctcacctt aggctataca aaaacacacc tctcttttaa ccttttggcg gcctggcggt
      361 cccgcccctg gcgggatcca tagctttgcc cttgcttcgc cgttcaatat ttaaattgac
      421 ggtacggcta cgcagggccc tgcgaagccc taccgtatta tttaatacac gaggggcgta
      481 gcaggggtct ccgggttacc ccggatttgc ctttatcaac ggttatcttt ttctctctta
      541 ttcaaagtat accacatatt ttaataattt caaggcctca ccgacgataa aaataagaaa
      601 atcagatcct ctcgcttaag accttcttta tcgccggcag ggccttaatg gcgtcttctt
      661 cgcccttttt gattaatcct tccaccttaa agaaatcaaa ccagtccacc ccctcggcta
      721 ccgggctgat caggacatcg gccttctggc agtcgctttc ggcaatggcg tattccatca
      781 tctgcatact gttgactata atatccagga cattggggaa aaaggcccgg ttaaaaaaca
      841 tccgcgcgtt gtaaaaaacc ctgtcccagg gactgccgga ataggcctta ttcctttcct
      901 cttcctggcg ccggcggtta aattcatagc tgcgcgagat gtcctgcgaa ctgggcagga
      961 cattgaccgc gatgattttg tttatcccgg ccttgactaa ggtccccacc gggaccggct
     1021 ccaatatccc gccgtcaata atcaaatccc ccgcgctgat agtaggggca aatactccgg
     1081 ggatggcaat gctggccatt accgcgtcca caattttgcc ggaagaaaaa accacctctt
     1141 tgcgtttagt caggttgcag gccactaccc taaaagggaa ccgcacatcc tgaaaggtct
     1201 tttcaccgat gtgtttggtc aagaacctgc ggatcttatt tcccttggca atggacatct
     1261 tatgcaggta taaatccatt aacaggccgt aggtcttctt gcggttattg ttatactcca
     1321 ggaaaatctc ctccaggccg cggctgtcta tgccgcaggc ccacatagct ccgacaagcg
     1381 cccccatact ggtgccggaa accatatcaa taggaatatt ctctttctct aaaaccttga
     1441 ttatcccgat atgggccagg ccgaatgccg cccctccgcc catggccagg cccagccgta
     1501 tccctcccaa ttcccgtgag agcctgcgga tagcccggga atattctatc tccggatgtt
     1561 ctttcacaac tcttttagat ttattggcgc tggtgtaggc ctcgtttaga aaaggcaggg
     1621 tggcgctcac cggataattt aaaaggtcaa aggcctcttc gtaagaaaca gccttttggg
     1681 cgctctcttc ctgcaggatc aatcttatct tttcctgggg agaattaatc ttctgaaaaa
     1741 gctcaaagag catagccctg gtgtttttta agctgggctc accgcaggcg ctggccaaat
     1801 agatgatatc ggtctgatta agcatcccga agaccgcgtc gtttaagacc gccggcaatt
     1861 ccaccactaa gtagtggtag gttccgctga aataggccag gagtccgctg aatcttgagg
     1921 cataggaaat gtcagcgctg tcataaagca cattgataat gcttaccccg gagatatcct
     1981 caaagacaaa cggcgctaaa ggagcgcctt gcatatccat ggcatccagg cgcaagacag
     2041 ggactgcagc cggttcggaa tactccaccc gtatggacag gccaaagtcc tggcaggcat
     2101 actccggccg gtcaataaca tttatcaaaa gtatcctgcg gccggtctct ttcttcaggc
     2161 ttaaggagag gttgaccgcg taagtcatta caaagtcccg gccgagatta atcccaaata
     2221 cggaaataat ccggctttca aagacctttt tttccaaacg gtcttttttc ttcaggcggc
     2281 ggcttagggt atggcttagg tctacggcca gcttgggcgc cttatttaaa attatcttga
     2341 aatcttcctg ggggatttcc aatatcttgg cgtcgcttgc cgcctggacg cttaccgaat
     2401 ggctttcccc cagaagggtg gaaatcatcc cgaaatacct tccgcagttc aggtattcca
     2461 tggtctcctc gccaatatac accctgaccc tgccgctgat aacgcaataa aatgccgacg
     2521 gaggcccacc ctggcggtag atatggtcgt ccttggcata ctctaccacc ttgctccttt
     2581 gcgttatcag gtccttctcc agcgggctta acctggcaaa gatcggggca tagttgatga
     2641 taaaggcctt atcctggtcc ttcttagccg taagattgat atggtccatc aaattttcct
     2701 gctcttatat tataatttcc ttttccatcc actcatactc acccgcaagc agttttttgg
     2761 ccagcctgga ggcaatctta tcttggttac gcgcaagccc ctggaagttt tgggcaatcc
     2821 tggtcctggc ctggcggcaa tagagatcgg ctaaatcaat agaactgtta ttgctttcct
     2881 tagccctggc ctgggaataa gaacagaccg ccgagatcac aaaaagttca gccccgatat
     2941 ccacaaagcg gttgagcgta ttctggcggg attctaactt ctgctgatgg ataagcatat
     3001 ttaaaaagat gacccgcgcc agccgcttag aggcattctg ggcaaaaagc aaatgccgct
     3061 ggagttttga gggtaaatcc ttaaacctcc tggcgcggca gcaaggcgct aacatcctca
     3121 aataccaaaa ggcatagaat atcccggtag aaacagccaa acctatcctc ttcaaaaacg
     3181 gggtcttgcc tcccattacc gccagcatcc ttcttaggtg ggggtccagg gcctcccggg
     3241 caatgaatag gcgcataatc tggctggtac cttcaataat cagatttatc cgggcatccc
     3301 ggaacatccg ctctaccgcg tatcccggct cgccccggcc cttaagggaa gccgcgctct
     3361 catatcctct tcctccgcgg atctgcaggg tatcgtcaat cactttccag gacatttccg
     3421 cgcagaacat cttggccatt gccgcctcca ggcggatatc taatttcttg gcatcagcca
     3481 tatgcgagga gagccaggtc agggcgtcta tggccagggt atttgccgcc atatccgaca
     3541 atttcaccgc caccccttca tgctcgccga taggaagccc ccactgtttt ctttccttag
     3601 accacttacg ggccaccgaa agacaccact tgctcatccc ggccgttgcc gcggggatag
     3661 tcagcctgcc ggtatttaag gtaacaaagg cgatcttcaa cccttcgcct tcggcgccca
     3721 aaatattctc cttaggcacc ttgacattgt tgaactttaa caaccctaat tttactccat
     3781 gcaggcccat aaaactacag tggtaagccg cctcaaaacc aggagtatca gtttctacaa
     3841 taaaagcggt aatccgcttt ttctctttgc ccttttctat cttcgccggg gtatgggcca
     3901 ttacaatcag gatatcggcg atattaccgt tagagatcca aagtttctct ccgttaatca
     3961 aataatgact gccgtcttcg gcaggaatgg cggtggtctt cattgtccgg ggatcagagc
     4021 cggcagtagg ctcggtaagc gcgaaaccgg agattgcccc tttcctgaac ctgggcagat
     4081 attttttctt ctgctcttcg gtgccgaaat agctcaaagg agtaggcacc ccgatactct
     4141 ggtgcgcgga taagagcact gtggttgagc cgcagtaact ggcaatcaaa tgcattgccc
     4201 ggttgtaatt cacctggttc agacccagtc cgccgtattc cggcttgatc ttcatcgcga
     4261 aggcccctaa atcggctaac cccttgatta ccttgtccgg gatttccccg gtcctgtcca
     4321 cctcgtccgg gtcaagttga gcgcttagaa aggccctcaa cttttcctga tactccgtgc
     4381 cgatcttttt atacgcttca gactgatcgg gaaagggata aatcaaatcc cagcgcagtt
     4441 tcccgtgaaa gatctcccgg acaaagctgg ggtaattcca ctccttctcc cgcgaggcct
     4501 cggccaattc caaagaggcc agttt
//
LOCUS       DATDUB010000120         6158 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_247261, whole genome shotgun sequence.
ACCESSION   DATDUB010000120 DATDUB010000000
VERSION     DATDUB010000120.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 6158)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6158)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6158
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_247261"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..457)
                     /locus_tag="VJA84_02380"
     CDS             complement(<1..457)
                     /locus_tag="VJA84_02380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41003.1"
                     /translation="MGFTFLNNFFLLFSAFVFTARYCSSEGFSYRLISLAVIFFVQAV
                     LILIFWGILGKLYLINIALSAGLIFLFSFWIRKKGNGCFLSLPSFTGNKVIILLIALI
                     AGFGIVKAAINLVNPPFGWDSLNYHFTFPVEWLKYANLRNPITINDDLAP"
     gene            complement(464..1225)
                     /locus_tag="VJA84_02385"
     CDS             complement(464..1225)
                     /locus_tag="VJA84_02385"
                     /inference="COORDINATES: protein motif:HMM:NF022750.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3108 domain-containing protein"
                     /protein_id="HLD41004.1"
                     /translation="MKKILGIAVLVLAAIIIISASRNNPGAILNRISSDNFKGDVKEL
                     VYKVYLFGVFPVGEAVIADKGLDKFGGEDVYRLSASAKGTALISKIYPFEADLDSYLE
                     PGTFLPLTFRQTLKTKDKETVKEVSYDQKNGIMRIADVKRTIFPDTYEPLSALYKLRR
                     MDLNAAGVFDFNINTNQKNYAFTGTINKEESRLKNETVNIFRLKGKIFRRDKNPYHQS
                     HFEIVFLDNPRKTPLYIKVFASGALLTVRLDGNQL"
     gene            complement(1334..1858)
                     /locus_tag="VJA84_02390"
     CDS             complement(1334..1858)
                     /locus_tag="VJA84_02390"
                     /inference="COORDINATES: protein motif:HMM:NF013540.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HLD41005.1"
                     /translation="MNKDWLWDRNISAKQAGKILGNPGHPEFITLAALLLSRKNVPRE
                     VFRDYLKPQDFCRNWKEIKQRMRKDAWGSPRIGFWQAVYEKLLEKYRGKAAGILLRSK
                     AKPYSGFCLLVGGKLRLLRKEKNLTQNALADKLEVSQQLISRIESGRENISLLTLKKI
                     TDKLGAKIDIIKTG"
     gene            complement(1855..1977)
                     /locus_tag="VJA84_02395"
     CDS             complement(1855..1977)
                     /locus_tag="VJA84_02395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41006.1"
                     /translation="MEIKSGILDLKTENRVDYRAMERHFKVETDRILESQIGRV"
     gene            complement(2095..3918)
                     /locus_tag="VJA84_02400"
     CDS             complement(2095..3918)
                     /locus_tag="VJA84_02400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014561568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyltransferase"
                     /protein_id="HLD41007.1"
                     /translation="MAYILGISAFYHDSAAALVKDGEIIAAAQEERFSRKKHDQDFPE
                     FAVEYCLKQAGIKASDLEDAVFYEKPLIKFERLLESYLAYAPLGISSFIKAMPPWIKQ
                     KLWIPEIIHKELPGFNGKLIFPSHHESHAASAFYPSPFQEAAILTLDGVGEWATASFG
                     IGKDNDIRLEYELRFPHSLGLLYSAFTYYTGFKVNSGEYKLMGLAPYGEPKYKDIILR
                     ELLDLKEDGSFKLNMRYFPYPYALRMLNRGFECLFGQPARRPESKITQFHMDIARSIQ
                     EVTEEAILRICRQIKKISGQKNLCLAGGVALNCVANGKVLKEKIFENIWVQPASGDAG
                     GALGAALFGWYKYLGNKRIACGGKDSQKASYLGPDYPDEEIEDFLKTGRIPYRKLSPR
                     ELPDVVADLLAKENIIGWFQGRMEFGPRALGGRSILADARSEKTQSKLNLKIKFRESF
                     RPFAPSVLKEKAGDYFDLEAESPYMLLTALVKEEIRRKMSDEENRLFGIEKLNVKRST
                     IPAVTHVDYSARVQTVSKVDSPLYYELINAFYKKTGCAVIVNTSFNVRGEPLVCRPRE
                     AYQCFMRTDMDYLAMGSFLLDKRQQPALDKDTDWQKEFTLD"
     gene            4132..5676
                     /locus_tag="VJA84_02405"
     CDS             4132..5676
                     /locus_tag="VJA84_02405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41008.1"
                     /translation="MRKITAIPITAMIFSLNFLVCSFAEGILWQNISQEENSLKTVLI
                     DPDNHSLIYFGSNNGIFKSEDAAESWRDILSLSGQDKTINHILFDPDDENHLYAAGSD
                     GLFYNSGKDKSWNRIFKAEADSGCTALSVLPYGIYLGTKSGLFVSKDQGLNWQREKNE
                     LGRGHIMAIAYAPGEPGHLYAATNQEIFLSADQGETWKDIFKAGIPMDAPTEDSEETE
                     TAELEEYFQIRDIAIDRGLNYLYAATSRGLYRAKNKGQSWQAVSVSGLSSPDITFILI
                     SPASAIYAAVQSGIFEYKDGYWQELSIGLNAGRIHYLAQDNSGSLYAAADKGLFKTVP
                     RDDLIGVIDWTTEPDIRQVQKAAIEYAEVNPEKITRWRKQAAKKAMLPQVSVGVDRNT
                     SDLWHWEGGSTTKTDDDILRRGKDTVDWDLTLSWDLGDLIWNNDQTSIDTRSKLMVQL
                     RGDILDETTRTYFERLRLKMELSKLKPGDQRKIEEKKLRLEELTANLDGLTGGYFSRN
                     LTNSGD"
     gene            complement(5656..>6158)
                     /locus_tag="VJA84_02410"
     CDS             complement(5656..>6158)
                     /locus_tag="VJA84_02410"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HLD41009.1"
                     /translation="ARAKYGRPNLKFLPMEAGALRFEEGSFDIVCSFQVIEHIPQAGI
                     PRYLSEIKRVLRPQGSFYLSTLNLEHAVKSPKTYKKNPAHCKEFVLEELRSLLLSQFA
                     QVEIYGLHLTARHCFYQRLKKIGLPMKRFYNSITTADFEVTGHNLKKAVSFICVCKKS
                     LIPAVG"
BASE COUNT         1719 a         1563 c         1302 g         1574 t
ORIGIN      
        1 tgggggcgag atcgtcgtta atggtaatcg ggtttcgcag gttagcatat ttaagccact
       61 ctaccgggaa ggtaaaatga taattcagac tgtcccagcc aaaaggggga ttgaccaggt
      121 taatagccgc ctttactatg ccaaaacccg caatcaaagc aataagcaaa attattacct
      181 tatttccggt aaaagatggc aggctcaaga aacagccatt cccctttttt cttatccaga
      241 aagaaaacag gaaaatcagc ccggcgctta aggctatatt tattaaatac agcttaccta
      301 atatccccca gaagataagg ataagaacgg cctgaacgaa aaagattacg gccaaggata
      361 tgaggcggta agaaaagcct tccgaggaac aataccgggc agtaaaaaca aaggcggaaa
      421 ataagaggaa aaaattattt aaaaaagtaa accccatcct tttttaaagc tggttaccgt
      481 ctaaacgcac ggtaagtaag gccccggagg caaagacttt aatatacagc ggggtctttc
      541 gcggattatc taagaatacg atctcaaagt gagactggtg gtaaggattc ttatcccggc
      601 ggaagatctt acccttcagc cggaagatat tcacggtttc attctttagc cgcgattcct
      661 ctttatttat ggtcccggta aaggcgtaat tcttctgatt ggtgtttata ttaaagtcaa
      721 atacgcctgc cgcgttcagg tccatccggc gcagtttata cagcgcggaa agcggctcgt
      781 aagtatccgg aaagattgtg cgtttaacat cagctatccg cattatcccg tttttctggt
      841 cgtagctgac ctcttttacc gtttctttgt cttttgtctt aagggtctgt ctaaaagtta
      901 gcggcagaaa tgtcccgggt tcaagataag agtccaaatc tgcctcaaag ggatagattt
      961 tagagattaa ggctgtgcct tttgccgagg ccgacaagcg gtagacatcc tccccgccaa
     1021 acttatccaa acccttatcc gcaatcaccg cctccccaac cggaaatacc ccgaaaagat
     1081 aaaccttata aaccaactct ttaacatcac ccttaaaatt atccgagctt atccggttta
     1141 aaatcgcgcc tgggttattt cgcgaggcgg aaataataat tatcgccgct aaaaccaata
     1201 cggctatccc taatatcttc ttcatagcgc tccttttctt tccataccat atgtataggt
     1261 tataacctat acatactata gattataacc tatacatata gcctaccaag aaaaaaatat
     1321 cctctcttta caattaaccg gtcttaataa tatcaatctt agcccccaat ttgtcggtta
     1381 tctttttcag agtaagcaga gatatgtttt ccctgccgct ttcaatccgg gaaatcaact
     1441 gttgagaaac ttctaatttg tccgccagcg cgttctgggt aagattcttc tctttacgca
     1501 gcaacctaag cttgccgcct accaacagac aaaacccgct atacggcttc gccttgcttc
     1561 taagtaatat tcccgcggcc tttccacggt atttttccaa caatttttca tataccgcct
     1621 gccagaatcc tatacgcggg ctgccccagg catcttttcg catccgctgt ttaatctctt
     1681 tccaattacg gcagaaatcc tgcggtttca gataatcccg aaaaacttcc cgggggacat
     1741 ttttcctgct aagcagtaaa gcggctaagg tgataaattc cggatgtccc gggttgccca
     1801 atattttacc cgcttgttta gcgcttatat tcctatccca caaccaatct ttattcatac
     1861 acggcctatc tgactttcca ggatacgatc tgtttccacc ttaaaatgcc tctccattgc
     1921 cctatagtca accctgtttt cagtcttcaa atccaggata ccgcttttaa tctccatacg
     1981 cggatagctc ctgaaccaat ttatcagcgc ctcctaccag cgtataatcg tcttcatacc
     2041 ctaaatatac aacatatatg ttgtattatc aagaaaaata caacacatat gttgttaatc
     2101 caaagtaaat tctttctgcc agtcggtgtc cttgtctaaa gccggctgct gcctcttgtc
     2161 cagcaggaaa ctgcccattg ccagataatc catatccgtg cgcataaagc actgataggc
     2221 ctcccgcggc cggcagacca gcggctcccc gcgcacatta aaagaggtat tcacaattac
     2281 cgcgcatccg gttttcttat aaaaggcgtt gatcagctcg taatacaaag gcgagtcgac
     2341 tttcgaaacc gtctggacgc gcgcggaata atccacatgg gttaccgccg ggatagttga
     2401 gcgcttgaca ttgagcttct ctatcccgaa aagcctgttt tcctcatcgc tcatcttgcg
     2461 ccggatttcc tccttgacca gcgcggtcaa aagcatatag gggctctcgg cctccagatc
     2521 aaaataatcc cccgcctttt cttttaaaac gctgggcgca aaaggccgga atgactcccg
     2581 gaacttaatc tttagattca gtttagactg cgtcttttcc gaacgggcat cggcaaggat
     2641 agagcgcccg cctaaggccc gtggcccaaa ctccatccgc ccctggaacc agccgatgat
     2701 attttccttg gccaataaat ccgccacaac atccggaagt tcccgcggcg ataatttccg
     2761 gtaaggaatc ctgccggttt ttaagaaatc ctctatctct tcatcaggat aatccgggcc
     2821 cagataagag gccttttgag aatcttttcc tccgcaggct atgcgtttat tacccaaata
     2881 tttataccag ccaaacaatg ccgcccccag cgcccctccg gcgtctccgg aagccggttg
     2941 gacccagata ttctcaaaga ttttctcttt taacaccttg ccgttagcca cgcagtttag
     3001 ggccacccct ccggccaggc aaagattttt ctgcccgctt attttcttaa tctgccggca
     3061 aatccgtaaa atcgcctctt cagtaacctc ctgaatagag cgggcaatat ccatatggaa
     3121 ttgggtgatt ttagactccg gacggcgcgc cggctggcca aagagacatt caaaaccgcg
     3181 gtttagcatc cgcaaggcat aaggataagg gaaatagcgc atattcagct taaatgagcc
     3241 gtcttctttt aaatccagca actctcttaa gattatatct ttgtattttg gctctccgta
     3301 gggagccagg cccatcaact tatattcccc ggagttgacc ttaaatccgg tataataggt
     3361 aaaggctgaa tataaaagcc ctaaggaatg gggaaatctt aattcatact ccaggcggat
     3421 atcattatct ttaccaatcc cgaaactggc agttgcccac tcgcctaccc cgtcaagggt
     3481 cagtattgcc gcctcctgaa acggcgacgg ataaaatgcc gaggccgcgt gagactcgtg
     3541 gtggctggga aagattaatt tgccattaaa tccgggaagc tccttatgga ttatctccgg
     3601 gatccaaagc ttctgtttaa tccacggagg cattgcctta ataaatgagc ttatccccaa
     3661 aggagcgtaa gccagatagc tttccaagag ccgctcaaat ttaatcaacg gcttttcata
     3721 aaaaaccgcg tcctccagat cactcgcctt gatcccggct tgttttaaac aatattcaac
     3781 cgcgaattcg ggaaaatcct ggtcgtgctt cttgcggcta aagcgctctt cctgggccgc
     3841 ggcaataatt tccccgtcct taaccagggc cgcggcgcta tcatgataaa acgctgaaat
     3901 gcctaatata taagccataa aggttattat atcctatctc cacaatccgt caagagctgt
     3961 tgactttaag gaaaaggttt gagataatta cgaagaggct ttcccttgcc aaagcactcg
     4021 taaatttcta caaaatttac tgcgttggca agggattaat tcgggcagat aacttacatt
     4081 cactcgcttt cgctcgttcc gtaagttatg ccctcattag gaggttaaaa aatgagaaaa
     4141 ataaccgcaa tcccgatcac agccatgata ttcagcttaa actttctggt ttgctctttt
     4201 gccgaaggca tcttatggca gaacatctcc caagaagaaa acagcctgaa aaccgtcctg
     4261 attgaccctg ataaccactc ccttatctat tttggttcca ataacggcat ctttaaaagc
     4321 gaagatgccg cggaaagctg gcgcgatatt ttatccttaa gcggccaaga caaaaccata
     4381 aaccatatcc tctttgaccc ggacgatgaa aaccacttat acgccgcagg ctctgacgga
     4441 ctgttctata actccggcaa agacaaaagc tggaaccgga tttttaaggc cgaggccgat
     4501 tccggatgca ccgccttaag tgttttacca tatggcattt atctgggcac aaaaagcgga
     4561 ctctttgtca gcaaggacca gggcttaaac tggcaaagag aaaaaaacga actcggcaga
     4621 ggccatatta tggctattgc ctatgccccc ggcgaacctg gccatctcta tgccgcgact
     4681 aaccaggaaa tatttttgag cgctgaccaa ggagaaacct ggaaggacat ctttaaagcc
     4741 ggtattccca tggacgcgcc aacagaagac agcgaagaaa cagaaaccgc tgaattggaa
     4801 gaatattttc aaatccggga tatcgctatt gaccgcggcc tgaattatct ttacgcggca
     4861 acctcccgcg gcctttaccg cgccaagaat aaagggcaaa gctggcaggc cgtttctgtc
     4921 tccgggctgt cttctcctga catcactttt atcctgatat cccctgcctc cgccatttac
     4981 gcggcggtcc aatccgggat atttgaatat aaggatgggt attggcagga attatccatc
     5041 ggcctaaacg cggggcgaat ccattacctg gcccaggaca atagcggttc tctctatgcc
     5101 gccgcggata aagggttatt caaaactgtc cccagggatg acctgattgg cgtcatagat
     5161 tggacgaccg aaccggacat ccgacaggtg caaaaagcgg caattgaata tgccgaggtt
     5221 aacccggaaa agattacccg atggagaaaa caagcggcaa aaaaggcaat gcttcctcaa
     5281 gtgagcgttg gcgtagacag gaatacctct gacctctggc attgggaagg aggctccacc
     5341 acaaaaaccg atgatgacat attaaggcgc ggcaaggaca ccgtagactg ggacctgacc
     5401 ttaagctggg atttggggga tttaatctgg aacaatgacc agacatccat tgatacgcgc
     5461 tccaagctga tggtccaact gcgcggtgat atcctggatg agaccacccg gacatatttt
     5521 gagcgcctgc gcctaaaaat ggaattgagt aaacttaagc ctggtgacca gagaaaaata
     5581 gaagaaaaga aattaaggct ggaagagctg accgccaacc ttgacgggct taccggaggg
     5641 tatttctcgc ggaatctaac caacagcggg gattaaagat ttcttgcata cacagataaa
     5701 agatacggcc ttttttaaat tatggcctgt tacctcaaaa tcagcggtgg taattgagtt
     5761 ataaaacctc ttcatcggca gacctatctt cttaagccgc tgataaaagc agtgcctggc
     5821 cgttaaatgc aggccgtaga tctcaacttg cgcgaattgg cttaataata agcttcttaa
     5881 ctcttctaaa acgaattcct tgcaatgcgc cgggttcttt ttataggtct tgggcgactt
     5941 aaccgcgtgt tctaaattca gggtagacag ataaaaagac ccttgaggcc ttaaaaccct
     6001 ctttatttct gaaagatacc gcgggatgcc ggcttgcggg atatgctcaa tgacctggaa
     6061 agaacagaca atatcaaagg aaccttcctc gaaacgcaag gcccccgcct ccatagggag
     6121 aaatttcaga ttaggcctgc cgtatttagc ccgggccg
//
LOCUS       DATDUB010000121         3134 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_598041, whole genome shotgun sequence.
ACCESSION   DATDUB010000121 DATDUB010000000
VERSION     DATDUB010000121.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3134)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3134)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3134
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_598041"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(204..467)
                     /locus_tag="VJA84_02415"
     CDS             complement(204..467)
                     /locus_tag="VJA84_02415"
                     /inference="COORDINATES: protein motif:HMM:NF022179.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="late competence development ComFB family
                     protein"
                     /protein_id="HLD41010.1"
                     /translation="MKICNYLEDIVREELEKVLADIKDICKCDKCKLDMIAWALNRLP
                     AQYVVTAKGRIYTKLKEENMQIKVDIMIALTKAILSVSKNPQH"
     gene            complement(472..2622)
                     /locus_tag="VJA84_02420"
     CDS             complement(472..2622)
                     /locus_tag="VJA84_02420"
                     /inference="COORDINATES: protein motif:HMM:NF025806.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division FtsA domain-containing protein"
                     /protein_id="HLD41011.1"
                     /translation="MDNSSPIIFALDIGTRKVMGIAARQTGEGLEILASRTIEHTARP
                     MLDGQIQNIEAVAKIVLQIKNSLEEHLGLKLTTAGVAVAGRDLITHRSKARRDFELEE
                     EITLEIIKELELEAVDDILSDPRKNSANFYCAGYSPVYYELNGAKIQHPLGHRGKEVS
                     CEIIVTLLNRSVLDSMFSVLAKAGLTPVNLTLEPIAAINAIVPPELRHLNIALVDIGA
                     GTSDLALTQEGFIYAYGMVPMAGDEITEGISQALLVDFLTAENIKRSIDLKDKIEYED
                     IWGRKQEITSQQAKDKTSASVKKLAQVIAENALALCAQKPEAVIVVGGGSLTFNLIPE
                     LAESFCLPIDRVGSRLPQAIKSLKNLPPQLNSPEAVTPLGIALMTAQSQGLNFIEIEV
                     NRKKFRLLDFKQKKDILGALTLSGVINNKRLYPKPGAALSCYVDGKLRFIKGSLGQPA
                     RITLNGKETASLSGIINSGDKIEFQEAINGENGSSTLKDLLNLKPAEITFNRQAGSYL
                     PAITVNGQKASSGQAVMERSDIRILNLKAKDILESHAIDTQTLSERQVLVNINGHPKV
                     LTQSNFSLRLNSQPCALESEVKNGDAIDFSLTQPTHYKIKDVIKIPERIHSLRIRVGE
                     KDIEVPVSPLQIFMNGQEVSPEEFLIDAAEIKTFHLKEETVMLSEIFRYIDFNPQAAL
                     GKKMRILVDDEPAGFTTPLSEGSRVKILFENRED"
     gene            complement(2624..>3134)
                     /locus_tag="VJA84_02425"
     CDS             complement(2624..>3134)
                     /locus_tag="VJA84_02425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41012.1"
                     /translation="FNEPEGDGAASYSRGHDDSVLKETPDVSIAVFSRITETIKGGIM
                     VLFSKNNSLLLSDLLTKKAPGENGLLTLVEVSALSETAYILSCSYLDSVGLMLNQRLL
                     IPSSPQTAIDKSGGLNKALIKRFLGEEVQCVMSIENIMTVDGREINLFIALLLEQESV
                     QKILEILGL"
BASE COUNT          673 a          750 c          770 g          941 t
ORIGIN      
        1 cgtcattgcg agcgaagcga agcaatctct tgcgacggga ttgcttcggc acttcgtgcc
       61 tcgcaatgac actttaaaaa tcgaatctcg aaatagtgtt tccgtcagag acaatgtcat
      121 aatttggaca tgtctgattt ttgtttagtt ttaagtttcg cgttgtcatt ttgccttttg
      181 agttttgcct ttttactttt tgtctaatgc tggggatttt tgcttacgga caatatggcc
      241 ttggtcaggg cgatcattat gtccaccttt atctgcatat tctcttcctt gagcttggta
      301 tagatccttc ctttggcggt gaccacatat tgggccggca ggcggtttaa ggcccaggcg
      361 atcatatcca atttacactt atcgcactta cagatgtctt ttatgtccgc cagcaccttt
      421 tccagctctt ccctgacaat atcttccaga taattgcata ttttcatagg attaatcctc
      481 cctgttttca aaaagtatct ttacccttga gccttcgctt aatggggtgg tgaatcctgc
      541 cggctcatca tccaccagta tccgcatttt tttgcctaaa gccgcctggg gattaaagtc
      601 aatgtaacgg aaaatttccg agagcattac cgtttcttct ttcaggtgaa aggtttttat
      661 ctccgcggcg tcaatcagga attcttccgg gctcacctct tggccgttca taaatatctg
      721 taaggggcta accggcactt ctatgtcttt ttctcccacc cgtatccgca ggctatgtat
      781 tcgctccggg atcttgatta catcttttat tttataatgc gtgggctggg tgagggaaaa
      841 atcaatcgcg tccccgtttt tgacctcgct ctccagggcg caaggctggg aattaagcct
      901 taaggagaag ttgctctggg tcaagacctt gggatggccg ttgatattga ccaatacctg
      961 cctttcagaa agggtttggg tgtctatggc atgggactcc aggatgtctt ttgctttgag
     1021 gttaagaata cggatgtccg agcgctccat aaccgcctgg cctgaagagg ctttttggcc
     1081 gtttacagtt atggccggta aataagatcc ggcctgccgg ttaaaggtga tttccgcggg
     1141 ttttaagttt agcaggtctt ttagggtaga tgagccgttt tcgccgttaa tggcctcttg
     1201 gaattctatt ttgtcgccgg agttgattat cccggaaagc gatgctgttt ctttgccgtt
     1261 taaggttatc cttgccggtt gtcccagaga gccttttata aaccttaatt tcccgtctac
     1321 ataacagcta agggccgcac ccggcttggg atagagcctt ttgttgttga tcaccccgga
     1381 taaggtcaat gcccctaaaa tatctttttt ctgtttaaag tccaagaggc ggaatttttt
     1441 gcggtttacc tctatttcaa taaaattcag gccttgagat tgggcggtca tcaaggctat
     1501 gcctaaggga gttaccgcct cgggagagtt taattggggg gggaggtttt tcagggattt
     1561 tatggcctgg ggcaggcggc ttcctacccg gtcaatgggc aggcagaagc tttcggccaa
     1621 ttccgggatt agattaaagg taaggctgcc tccgccgaca actattaccg cctccggctt
     1681 ttgagcgcat aaagccaggg cgttttcggc aatgacctgg gctaactttt tgacggaagc
     1741 ggaagtttta tcctttgctt gttggctggt aatttcctgt tttcttcccc agatgtcctc
     1801 atattctatt ttatctttta gatcaatgga gcgtttgatg ttttccgcgg tcaggaaatc
     1861 cactaacaag gcctgggata tgccttcggt gatttcatcc ccggccatag gcaccatccc
     1921 gtaggcgtag ataaatcctt cctgggtcag ggccaggtcg gatgtcccgg ccccgatatc
     1981 caccagcgcg atattcagat ggcgcagttc cggcgggact atggcgttga tggcggcaat
     2041 aggctccagg gtcaggttga ccggcgttag accggcttta gccagcaccg agaacatact
     2101 gtctaaaacc gagcggttaa gcagggtaac gataatctcg caggaaacct cttttccccg
     2161 gtgcccgaga ggatgttgta ttttcgcgcc gtttagttcg taatacaccg ggctgtagcc
     2221 ggcgcagtaa aagttggcgc tgttctttcg ggggtcagag aggatatcgt ccaccgcctc
     2281 cagctccagc tctttgatta tttccagagt gatttcttcc tccagctcaa aatcgcgcct
     2341 ggccttgctc ctatgggtaa tcaggtccct tccggccacc gccaccccgg cagtggttaa
     2401 tttcagtcct aaatgttctt ctaaagaatt cttgatttgc aggactattt ttgccaccgc
     2461 ttctatgttc tggatctgtc cgtctaacat cggacgagcg gtatgctcaa tagtcctgga
     2521 ggctaatatt tccagcccct cgccggtttg ccgggcggca atgcccataa ccttgcgggt
     2581 gccgatatct aaagcgaaaa ttattggtga actattatcc atattataac cccagtatct
     2641 ccagtatctt ttgaacgctt tcctgttcta aaagaagggc gataaaaaga ttaatctctc
     2701 tgccgtcaac cgtcataatg ttttcaatgg acatcacgca ttggacctct tcgcccagga
     2761 atctttttat caaggccttg ttcaggccgc cgctcttatc tatggccgtc tggggcgagg
     2821 aagggattaa gagccgttga ttaagcatta agcctacgga gtccagatag gaacaggaaa
     2881 gtatataggc tgtttcggat aaggcggaga cctcaactaa ggtgagcagg ccgttttcgc
     2941 cgggggcctt tttggtcagc aagtcgctta gcaagaggct gttatttttg gagaaaagga
     3001 ccataatccc gccttttatt gtctcggtta tccgggaaaa tacggcaatg ctgacatccg
     3061 gggtctcttt taatacgctg tcatcatggc cgcggctata ggaagccgcg ccatcgccct
     3121 ctggctcatt gaac
//
LOCUS       DATDUB010000122         2912 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_417676, whole genome shotgun sequence.
ACCESSION   DATDUB010000122 DATDUB010000000
VERSION     DATDUB010000122.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2912)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2912)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2912
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_417676"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1577)
                     /locus_tag="VJA84_02430"
     CDS             complement(<1..1577)
                     /locus_tag="VJA84_02430"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HLD41013.1"
                     /translation="MMYSILLTAIFVLGAFLRFYNIEKCCLHGDGVLTAGIISDSKSL
                     IDTWRNVTGGFHGDLPAYYIILDLWSYLVGDSVFCLRLFSLVCSLLFIAVVYKLAKLL
                     FDRKTAILSAYLSAISPLLVFYSRKVRYYSLSSFLHLAGLYFFIRVIEKRDYRNCLFY
                     VLLTAAGLYVNYSAFLFLLSQALFIILYRHSYPSGLKSWLKCLALVFILWLPISGYFF
                     RDFILLLQSEGFVHAPFKAGWLISALHLFFSFFFGETVSPFNYPVVAAGAAVCSIVLA
                     KFLKERFFYKTDRNVVFLIITILTVTFLCALSGYNFSRYIKAVSGLCAIAAALGILSF
                     RKKTFVLVLIFVVTSLSAYSLHNLYARKEYHHKEFADSWDKISEYVDNNSDAKDMIVF
                     NGLAFGYYMEKINPLKSIHSMPEDEEGMRQLIREAIEGPKVERVVLVDAPLSGLRMKD
                     FEDEIALLKDYLSGHNYRLVKQECFDRDRRASLRRKFVDRPFPDCRTTVYVYVNPLPN
                     PPHKGEGTIERGFTQIPL"
     gene            complement(1692..>2912)
                     /locus_tag="VJA84_02435"
     CDS             complement(1692..>2912)
                     /locus_tag="VJA84_02435"
                     /EC_number="2.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013452068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS family aminotransferase"
                     /protein_id="HLD41014.1"
                     /translation="LSRSITAGLENPAYPKDYNDIMILKNILPAPEPKLNPKSRVIPV
                     SAPVFAGNELKYLSHCIKSGWVSCLGGYVTKFEQKFAAYCGVRYGVSVSSGTTALHLA
                     LAALGIGKGDEVILPAFTMVSTANAVTYQGAKPVLVDSQRDALNIDPEKIEEKITKKT
                     KAIIAVHIYGHPADMDRVMKIAREHKLYVVEDAAEAHGAEYKGRKAGSIGDIGAFSFY
                     GNKIITTGEGVMLVTNNKKLKEKAEYLRDLAFSPERHFWHKELGFNYRMSNLQAAVGL
                     AQLERIEELIAIKRGNAGIYCRYLQDVKGITLPVEKDYVRNVYWMFGILVKDNFGISK
                     DELRKRLAWKGIETRNFFIPMHLQPIYARRCPGRFPVSEELCRKGLYLPSGFNLKEKD
                     IRFISQSIKEECRV"
BASE COUNT          826 a          765 c          640 g          681 t
ORIGIN      
        1 aggggaatct gggtaaaacc tctctctatg gttccctccc ccttgtgggg agggttaggg
       61 agggggttaa cataaacata aaccgtggtc cggcagtcgg ggaaaggccg gtccacgaat
      121 ttcctgcgca aggacgcgcg ccggtcgcgg tcaaaacact cttgtttcac caggcggtaa
      181 ttatgcccgg acagataatc cttgagcaag gcaatctcat cctcaaaatc cttcatcctc
      241 aagccgctta aaggcgcatc caccaagaca accctttcta ctttcggccc ttctattgcc
      301 tcccggataa gctggcgcat accttcctca tcctccggca tactatggat agatttcaag
      361 ggattgatct tctccatata ataaccgaag gccaggccgt taaaaacaat catatcctta
      421 gcatccgaat tattgtccac atattcgctt atcttgtccc agctatccgc gaactcctta
      481 tgatgatatt ctttcctggc gtaaagatta tgcagggaat acgcgctaag cgatgttaca
      541 acaaatatca ataccaacac gaatgtcttt ttgcgaaaac tcaatatccc cagggccgcg
      601 gctatggcgc ataatccgga taccgccttg atataacgac taaaattata cccggacaaa
      661 gcgcacaaga aagttaccgt caggatagtt ataattaaga atacaacatt cctgtctgtc
      721 ttataaaaaa agcgttcctt taaaaacttc gccagaacaa tggaacacac cgccgcaccc
      781 gcggccacca caggataatt aaaaggcgag accgtctccc cgaagaaaaa ggaaaagaat
      841 aaatgcaaag cggatatcag ccatccggct ttaaaagggg catgcacaaa gccctcggac
      901 tggagcagaa ggataaaatc cctgaagaaa tacccgctta tgggaagcca gagaataaat
      961 accagggcca gacacttcag ccaactcttt agtcccgagg gatagctatg gcggtataga
     1021 ataataaaca aggcctggga cagaaggaac agaaaagcgg aatagttcac ataaagcccg
     1081 gcggcggtaa gcagaacata gaaaaggcaa ttccggtaat cccttttttc tatcacccga
     1141 ataaagaaat ataaccctgc cagatgcagg aacgaggaca aggagtagta acggactttg
     1201 cgggaataaa agaccaaaag cggagagata gcgctaagat aggcggacag gattgccgtc
     1261 ttgcggtcaa aaagcagttt ggctaattta tagaccaccg ctataaagag aaggctgcag
     1321 accagcgaaa acagccgcag acaaaagacg ctatcgccta cgagatagct ccataaatcc
     1381 aggataatat aataggccgg cagatccccg tggaaaccgc cggtcacatt acgccaggta
     1441 tctatcaggc tttttgaatc cgagattatc cccgcggtca gcaccccgtc gccatgaagg
     1501 cagcactttt ctatgttata aaaacgcaaa aaagctccta agacaaatat cgcggtcagt
     1561 aagatactat acatcattgc tgccccaatt agcgtcattg cgagcgaagc gaagcaatct
     1621 ttcagacgga gattgcttcg tcgctatcgc tcctcgcaat gacaatttaa acgcaaatga
     1681 cccaacataa atcaaaccct gcattcctcc tttatgcttt gagaaatgaa gcggatatct
     1741 ttttctttta agttaaatcc cgacggcaga tacaggcctt tgcggcaaag ctcctcggag
     1801 accgggaaac ggcctgggca tcttcgggcg tatatcggct ggaggtgcat cgggataaag
     1861 aaattgcggg tctcaatccc tttccaggcc agccgctttc ttaactcgtc tttagaaatc
     1921 ccgaaattat ctttcactaa gataccgaac atccaatata cattccggac ataatccttt
     1981 tccaccggca gggtaatccc tttgacatcc tgcaaatagc ggcaataaat cccggcgttc
     2041 ccgcgcttaa tggcaatcaa ttcctctatt ctctctaatt gggccagccc caccgcggcc
     2101 tggagattag acatccggta gttaaagcct aattccttgt gccagaaatg ccgctccggg
     2161 gaaaaagcca agtcccgcag gtattccgcc ttttctttga gcttcttgtt attggtaacc
     2221 agcatcacgc cttcgccggt agtgattatc ttattcccgt aaaagctaaa ggccccgata
     2281 tccccgattg atccggcctt gcggccttta tactccgcgc cgtgggcctc cgcggcatcc
     2341 tcaaccacat agagtttatg ttcgcgggca atcttcataa ccctgtccat atccgccgga
     2401 tggccgtaga tatgcaccgc gattatagct ttggttttct tggttatctt ttcctcaatc
     2461 ttttccggat caatattcaa ggcgtctctt tgagaatcta ccaggacagg cttagcccct
     2521 tgatatgtaa ccgcgttagc cgtggaaacc atcgtaaaag ccggtaaaat aacctcatcg
     2581 cccttaccta tgcccagggc ggccagggcc aggtgcaagg cagtggtccc gctgcttacc
     2641 gataccccat atctcactcc gcaataagcg gcaaatttct gctcaaactt ggttacataa
     2701 ccacccagac aggaaaccca tccactcttg atgcaatggc taagatactt aagctcatta
     2761 ccggcaaaga ccggcgcgct taccgggatc acccgggatt tggggtttag cttaggctcc
     2821 ggggcgggca gaatattttt tagtatcata atatcattat aatccttagg ataggcgggg
     2881 ttttctaacc ccgccgtgat gctgcgggac aa
//
LOCUS       DATDUB010000123         2688 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_249584, whole genome shotgun sequence.
ACCESSION   DATDUB010000123 DATDUB010000000
VERSION     DATDUB010000123.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2688)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2688)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2688
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_249584"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..690
                     /gene="larE"
                     /locus_tag="VJA84_02440"
     CDS             <1..690
                     /gene="larE"
                     /locus_tag="VJA84_02440"
                     /inference="COORDINATES: protein motif:HMM:TIGR00268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent sacrificial sulfur transferase
                     LarE"
                     /protein_id="HLD41015.1"
                     /translation="NVLAITAVSPTYTRKELAAAKDLAGELNVRHRIIHTNEVDDPNF
                     KANPENRCYYCKSELFSKLREMARKEGIGFVLGATNADDLKDYRPGSLAKKECGVYSP
                     LAEAGLSKKEIRRLSKEFGLKTWDAPQAACLASRFAYGQEIRPEDLARVEKAEDFIRS
                     LGFKMVRVRHYQLPDKTLLARVEVAAQDIERVTSHKSQVTSKLKKLGYNYVTLDLEGY
                     RSGSMNEGIKK"
     gene            743..1906
                     /gene="nifS"
                     /locus_tag="VJA84_02445"
     CDS             743..1906
                     /gene="nifS"
                     /locus_tag="VJA84_02445"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011345085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0031071 - cysteine desulfurase activity
                     [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase NifS"
                     /protein_id="HLD41016.1"
                     /translation="MERIYLDYAATTPCDPRVVEAMSPYFTEKFGNPSSIHSFGQEAK
                     KGMEDSRQALADFLGAKPEEIIFTSGGTESNNLAIFGVCAAQEKKGSHIITSNIEHHA
                     IIEPCKALEKKGYTTSYVKVDKDGIIDPADVKKAITDKTALISIMQANNEIGVIQPIA
                     EIGKIAKEKGITFHTDAVQTVGHIPVDVNELNVDLLSLSAHKFYGPKGVGALYVRKGT
                     RINRFLHGGDQEKGRRASTSNVSGIVGLGKAVELCKPKMKEEADFQISLRDSLIKGLL
                     AKIDQRRLNGHPSLRLPNNVNMSFEYIEGESMLLNLDMLGIAASTGSACTSSSLEPSH
                     VLLAIGLPHEIAHASLRFSLGRWTKKSDIDYLLEVLPGIIDKLRQMSPLYEKK"
     gene            1903..>2688
                     /gene="bioB"
                     /locus_tag="VJA84_02450"
     CDS             1903..>2688
                     /gene="bioB"
                     /locus_tag="VJA84_02450"
                     /EC_number="2.8.1.6"
                     /inference="COORDINATES: protein motif:HMM:TIGR00433.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004076 - biotin synthase activity
                     [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biotin synthase BioB"
                     /protein_id="HLD41017.1"
                     /translation="MKPKNRKTEKPKNIVLNEITNDVLSGKGITLEQANKLKEVNEGD
                     VYSLFSAAYKIRRKFRGKKVELCAITNARSGACAEDCAFCAQSSWNKTKVKVYPLLEE
                     KEIFKRAQAAQDTGAGYFCIVTSGRRVGEKKDFSRICRAIAKIRSRLKLNVDASLGEL
                     TLEEAKSLKQAGLFRYNHNLETAGSLYPEVCATHTYSDRIRTIENVRQAGLELCCGGI
                     FGMGESWAQRLELAFTLRKFNPECIPVNFLNPIPGTKFGRQNSL"
BASE COUNT          720 a          613 c          743 g          612 t
ORIGIN      
        1 aatgtcctgg caataaccgc ggtttctccc acttataccc gcaaggaatt ggccgcggct
       61 aaagaccttg ccggagaatt aaatgtccgg catcggatta tccataccaa tgaggtggat
      121 gaccctaact ttaaggccaa cccggaaaac cgctgttact attgtaaaag cgagcttttc
      181 tctaaactgc gggagatggc ccgcaaagaa gggataggtt ttgttctggg tgccactaac
      241 gccgatgacc tcaaggacta ccgtccgggc tctctggcca agaaggaatg cggggtctat
      301 tcgccgctgg ccgaggcagg tttaagcaag aaagagatcc gccggctctc aaaagagttt
      361 gggctaaaga cctgggacgc ccctcaagcg gcctgtctgg cctccaggtt tgcctatggc
      421 caggagatta gaccagagga tctggcccga gtggagaagg ccgaggattt tatccgctct
      481 ttgggcttta agatggtgcg ggtgcgccac tatcaactgc cggataagac gcttttggcc
      541 agggtggagg tagctgcgca agatattgaa agggtcacaa gtcacaagtc acaagtcaca
      601 agtaaattaa aaaagttagg gtataattat gtaaccttgg atttggaggg ttatcgttcg
      661 gggagtatga acgagggaat caaaaagtag ggacagaccc ccgtgtctgt ccgacagctt
      721 gttaaaatgg agaatacata aaatggaacg gatatattta gattacgcgg ctaccacgcc
      781 ctgcgacccg cgggtggtgg aggcgatgag cccgtatttt acggaaaagt tcggcaatcc
      841 ttcaagcatt cattctttcg gccaggaggc caagaagggt atggaggata gccgtcaggc
      901 cttagcggat ttcctggggg caaaacccga ggagattatc tttacttcgg gaggcaccga
      961 gagcaataac ctggccattt tcggcgtctg cgccgcccaa gaaaaaaaag gcagccatat
     1021 tattaccagc aatattgagc atcacgccat cattgagccg tgcaaggcgc tggagaaaaa
     1081 aggctatacc accagttatg tcaaggtgga taaagacggc ataattgacc cggcggatgt
     1141 aaaaaaggca atcactgata agaccgcgct gattagcata atgcaggcca ataacgagat
     1201 cggggttatc cagcctatag ccgagatcgg taagattgcc aaggaaaaag gcataacctt
     1261 tcatactgac gcggtgcaga cggtggggca tatcccggtg gatgtcaatg aacttaatgt
     1321 ggatttatta agcctctcgg cgcataagtt ttacggtccc aaaggtgtgg gggccttgta
     1381 tgtccgtaaa ggcacgcgca taaaccgatt cctccacggc ggcgatcagg aaaagggacg
     1441 gcgcgcctca acctctaatg tgtcggggat tgtgggtttg ggaaaggccg tagaattgtg
     1501 caaacctaag atgaaagaag aggcggattt tcagatcagc ctgcgggata gcctgattaa
     1561 aggtttgctg gccaagattg accagcgcag gcttaacggg cacccgagcc tgcggcttcc
     1621 caacaatgtg aatatgtctt ttgagtatat tgagggtgaa tcaatgcttt taaacttaga
     1681 tatgctgggt attgccgcct caaccggatc agcctgcacc tctagttctt tggaaccctc
     1741 gcatgtgctt ctggccatcg gtctgcccca tgagattgcc catgcctcgc ttagattcag
     1801 cctgggcaga tggaccaaaa agagcgatat tgattatctg cttgaggtct tgcccgggat
     1861 tattgataaa ctacgccaga tgtcgccgtt gtatgagaaa aaatgaaacc gaaaaaccga
     1921 aaaaccgaaa aaccgaagaa tatagtacta aatgaaatta ctaatgatgt cttgtccggt
     1981 aaaggcatta ccctggagca ggctaataag ctgaaagagg tcaatgaggg agatgtctat
     2041 tccctttttt ccgccgcgta taaaatccgc aggaagttcc gggggaagaa ggtggagctc
     2101 tgcgctatca ctaatgcccg aagcggggcc tgcgctgaag actgcgcctt ctgcgcccag
     2161 tcctcctgga ataaaaccaa ggttaaggtt tatcctttgt tagaggaaaa ggagatattt
     2221 aaaagggccc aggccgccca ggataccggc gcgggatact tttgcattgt caccagcggc
     2281 cggcgcgtcg gagaaaaaaa agatttctca aggatttgcc gggcgattgc taaaatccgt
     2341 tccaggttaa agctcaatgt ggatgcctcg ctgggcgagc tgacccttga ggaggccaag
     2401 tctcttaaac aggccgggtt attccgctat aaccataatt tagagactgc cgggagctta
     2461 tatccagaag tctgcgctac ccacacctac tctgaccgga taaggaccat tgagaatgtc
     2521 aggcaggcgg gtttagagct ttgctgcgga gggatattcg ggatggggga gagctgggcc
     2581 cagaggttag agctggcctt taccttgcgc aagtttaatc cggagtgcat cccggttaat
     2641 tttctaaatc ctatccccgg cactaagttt ggccggcaaa attcctta
//
LOCUS       DATDUB010000124         2083 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1431615, whole genome shotgun sequence.
ACCESSION   DATDUB010000124 DATDUB010000000
VERSION     DATDUB010000124.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2083)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2083)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2083
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1431615"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1130)
                     /locus_tag="VJA84_02455"
     CDS             complement(<1..1130)
                     /locus_tag="VJA84_02455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012414573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homocitrate synthase"
                     /protein_id="HLD41018.1"
                     /translation="MSAQIRPKIYILDVTNRDGVQTSRICLSKLEKTMINYLLNQMGI
                     AQSEFGFPVTHHETNYLNANLELAEDGVLAPISLSGWMRATKEDVKASFKLVPKLKHI
                     NLSISTSDQMIIHKFKGKLDHKSVIVEMEQAVALAKKHGAQIIGVNAEDASRTRMDYL
                     IEFASAAKDAGSDRIRYCDTLGCDSPFSIYDRIRLLAESVKLPIEIHCHNDLGLVTAN
                     SIAGAKAALDAGVDAYINTCVNGMGERAGNADLVSCILALRYASGFEGKYALDERINL
                     KAAWRICKYASYAFGVPIPINQPGIGANAFAHESGIHADGALKDRKNYELYDFEELGR
                     GEPEIVETGRKITAGEYSGIKGFRNVYEKLEVEFKDDAQATE"
     gene            complement(1336..>2083)
                     /locus_tag="VJA84_02460"
     CDS             complement(1336..>2083)
                     /locus_tag="VJA84_02460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41019.1"
                     /translation="RLSDDVPDAPEIKKIVPECFSDKDCRKKGFIGKCDNAAKSSAAC
                     SFIKPESLSLLIIQPKDIKVPGQDKFIDYLKNHFPGIEVKFMDSGSKAGKSWMEKTQA
                     KLLPIYLLAKEADKGDGFSKIKEFAELKEGYYYISPRLSGGLIFIGRQRIPGKLDVFL
                     GARGKELEGALASLKELQAKHKDLKVELHYLAFEKKDGFGAPAGLSELEEDLRQVCIK
                     KHNPDKFWDYALCRSRSQESTWWDICAEGL"
BASE COUNT          469 a          578 c          459 g          577 t
ORIGIN      
        1 atttcggtgg cctgggcgtc gtctttaaat tccacttcta atttttcata gacattgcga
       61 aaacccttga tcccggaata ttccccggct gtgatcttcc tgccggtctc aactatctcc
      121 ggttcgccac gacctaattc ctcaaaatca tacaactcat aattcttcct gtctttaagc
      181 gccccgtcgg catgtatgcc ggactcatgg gcaaaggcat tggcccctat gcccggctgg
      241 tttataggga taggcacccc aaaggcgtag gaggcgtatt tgcagatcct ccaggccgcc
      301 ttgaggttta tccgttcatc cagggcgtat tttccctcaa atccgctggc ataccttaag
      361 gccaggatac agctgactaa gtcggcattg ccggcccgct cgcccatccc gttgacgcag
      421 gtattgatat aggcatccac cccggcatcc agggcggctt tagccccggc aatggaattg
      481 gccgttacca ggcctaaatc attgtggcag tgtatctcaa tgggcagttt cacgctttcc
      541 gccaaaagcc ttatccggtc atagatacta aacgggctgt cacagcccaa ggtatcacaa
      601 tagcggatgc ggtcgctccc ggcgtcttta gctgccgagg cgaattctat cagataatcc
      661 atccgggtgc gggaggcatc ctcggcattg accccgataa tctgggcgcc gtgtttcttg
      721 gccagggcca ccgcctgctc catctccacg attacggact tgtggtcaag cttaccctta
      781 aatttgtgga tgatcatctg gtctgaagta gagatggaaa gattgatgtg ctttagctta
      841 ggcaccagct taaaactggc cttaacatct tctttggtgg cccgcatcca tccactcaaa
      901 gatatagggg ccaatacccc atcttcagcc agttccaggt tggcattcag ataattggtt
      961 tcatgatggg taaccgggaa cccgaattca gattgagcta tccccatctg gttcaggaga
     1021 taatttatca tcgtcttttc cagcttggac aggcagatcc gcgaggtctg caccccgtcc
     1081 cggttagtca catccaaaat gtaaatcttc ggcctaattt gcgcgctcat ttttgtctcc
     1141 ctctgtctct aattttaata tcttttccaa ttcctccacc ttaggcgcgc ctttagtagc
     1201 gaatatcctg ttgttttcgg atagatacgc cggaccggag gatatctcca gctccttatt
     1261 taggctgata ttctcactta acagactaaa tccttcctcg gatagactgc agtccttaat
     1321 taccttcggc tctattcaca ggccttcggc gcaaatatcc caccaggtgc tttcctggct
     1381 ccgagagcgg cataaggcgt aatcccagaa cttatccgga ttatgcttct ttatacagac
     1441 ctggcgcaga tcctcctcta attccgacag tcccgcgggc gcgccaaaac cgtctttttt
     1501 ctcaaaggct aagtaatgca attccacctt taaatcctta tgcttggcct gcaattcttt
     1561 caggctggct aaggcgccct ctaattcctt acccctggcg cccaggaaga catctaattt
     1621 cccgggtatc cgctgtctgc cgataaagat caggccgccg gacaggcgcg gactgatata
     1681 ataataacct tcctttaatt ccgcgaattc ctttattttg gagaatccgt ctcccttgtc
     1741 ggcttctttt gccagaagat atatcggcag aagcttggcc tgggtcttct ccatccagga
     1801 tttcccggcc tttgagccgg aatccataaa cttaacctct atcccgggaa aatgattctt
     1861 taaataatca ataaatttat cctggccggg aaccttgata tctttgggct ggattatcaa
     1921 aagtgaaagg ctctcgggtt taataaaact gcaggcggca gaacttttcg cggcattatc
     1981 gcacttaccg ataaaaccct ttttgcggca atccttgtcc gaaaagcact ccggaactat
     2041 cttttttatc tccggggcat ccgggacatc atcggaaagg cgg
//
LOCUS       DATDUB010000125         4349 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1268550, whole genome shotgun sequence.
ACCESSION   DATDUB010000125 DATDUB010000000
VERSION     DATDUB010000125.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 4349)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4349)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4349
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1268550"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1102
                     /locus_tag="VJA84_02465"
     CDS             <1..1102
                     /locus_tag="VJA84_02465"
                     /inference="COORDINATES: protein motif:HMM:TIGR01826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="YvcK family protein"
                     /protein_id="HLD41020.1"
                     /translation="RPIYILLTLLGVFLGVLGLRNILNSFLTVFMPSGDKDLVDMIYR
                     KRYLEKGPRIAVVGGGTGLSVLLQGLKEYTSNISAIVTVADDGGSSGRLRQQFDILPP
                     GDIRNCLVALADAPALMQDLFQFRFDSAASELSGHSFGNLFITVMTKLTGDFEKAIKE
                     SSRVLAIRGQVIPATLNKVSLVARYKDGSTIEGEASIPDRKRQISRVSLNPEDAQATP
                     EAIKAIMQAQAIVLGPGSVYTSIIPNLLIKEISEAIIKSPALKIYICNVMTQPGETGG
                     YSAYDHIRALTEHSTGKIIDYCLVNSREVPREMLERYRQTDSYPVSADIQKIRHAGYR
                     VIEDDIINIQNYVRHDSGKLAKIVMGLVQENY"
     gene            1110..1451
                     /locus_tag="VJA84_02470"
     CDS             1110..1451
                     /locus_tag="VJA84_02470"
                     /inference="COORDINATES: protein motif:HMM:NF012599.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HPr family phosphocarrier protein"
                     /protein_id="HLD41021.1"
                     /translation="MYTVKKKLVVKNKLGLHARPAALFVQIANKFESDIAVAKDEQEV
                     NGKSIMGILMLAAERDSVIVITATGKDALQAVEGLEDIIGIEDIDRKFSHRVSGPLQD
                     TLRQDNKVNRK"
     gene            1448..3184
                     /gene="ptsP"
                     /locus_tag="VJA84_02475"
     CDS             1448..3184
                     /gene="ptsP"
                     /locus_tag="VJA84_02475"
                     /EC_number="2.7.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013778062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008965 - phosphoenolpyruvate-protein
                     phosphotransferase activity [Evidence IEA];
                     GO_process: GO:0006808 - regulation of nitrogen
                     utilization [Evidence IEA];
                     GO_process: GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate--protein phosphotransferase"
                     /protein_id="HLD41022.1"
                     /translation="MTELKGIAASGGIAIGKAYLWAKEEFVIPRQPISEDQIARQIQL
                     FEEALIKTRHEILELQKKISAEMGQSEAEIFDAHLLVLEDRMLIEDVISQMKSEKLNA
                     AYIFQNVLKKYVQVFLKIEDEYLKERVSDINDVGRRILRNLLGKSAKRFEDLQEKVIL
                     VAHDLSPSDTAAMHKKNILAFVTDVGGKTSHTAIMAKSMEIPAVVGLEKSILSIKTGD
                     ILIVNGSTGLVLVNPDQDALDNYQKEEAAFKDITRRFILLKDQPAVTLDNRLVQLAAN
                     IELPDEIPSILEHGAEGIGLYRTEFFYMNRTDIPSEEEHYQAYKFVAQAVKDNPVIIR
                     TLDLGGDKFLSHLEIPRDMSPFLGWRAIRFCLARPDIFKIQLRAILRASVHGNLKLMY
                     PMISGIEELRKANILLEECKKELKEKGLAFNDSMEVGAMIEVPSAAMTADIIAKEADF
                     FSIGTNDLIQYSIAVDRSNEKVAYLYEPAHPGVLRLIKNIIDVGHRAGIWVGMCGEMA
                     GDPLFTLILLGLGLDEFSMPSIMVPEIKHIIRSVNMAQAKQIAEEAVSLPTAAEVESF
                     VNLKLKQLSGTE"
     gene            3192..3923
                     /locus_tag="VJA84_02480"
     CDS             3192..3923
                     /locus_tag="VJA84_02480"
                     /inference="COORDINATES: protein motif:HMM:NF018288.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004347 - glucose-6-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase family protein"
                     /protein_id="HLD41023.1"
                     /translation="MRDLSRASGLDLRLDSRKHALVFGKAVVHSLAKESGSLKCRLYG
                     DARGIKDTDILYKNKLKFDLTLLSPGRIGKHLPMTLGVYPRDGRTKLYEVISGQAWFL
                     LQKENKDDCRIIDDVILLKAREGEKIILPPGYGHVLINPGKDDLVAACFSSRALICES
                     QKYLRAKGGVYFIFKDNLGEFFQPNPFYREVPYMRIACPSSQVERFGLNSAETLYNLA
                     SKGIEKLDFLNNPAKYDYSDVLEFL"
     gene            3933..>4349
                     /locus_tag="VJA84_02485"
     CDS             3933..>4349
                     /locus_tag="VJA84_02485"
                     /inference="COORDINATES: protein motif:HMM:NF012695.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate nucleotidyltransferase"
                     /protein_id="HLD41024.1"
                     /translation="MKALILAAGYGTRMYPLTKACPKPLLLVGARPILDYALEKLVRL
                     KGLREAIIVTNDKFFLNFKNWAAKSENRYGLALKVLNDGTKSDAGRLGAIGDINFALS
                     RENAWDDLIIFGGDNLFEDDLSAFLKSALKLSPAVTI"
BASE COUNT         1123 a          977 c         1173 g         1076 t
ORIGIN      
        1 ccggccgata tatatcctgc ttaccctttt gggggtattc ttaggggtct tgggtctgcg
       61 caatatcctg aattcttttc ttaccgtgtt tatgccttcc ggagataaag atctggtgga
      121 tatgatctat cgcaagcgct atctggaaaa aggccccagg atagcagtgg taggcggagg
      181 cacgggttta tcggttttat tgcaggggct taaggaatac acctctaata tttcagctat
      241 agttacggtt gccgatgacg gcggctcatc cgggaggctg cgtcagcagt ttgacatact
      301 cccgcccgga gatatccgta actgtctggt ggccctggca gacgccccgg ctcttatgca
      361 ggatttgttt cagttccgtt ttgactccgc cgcaagcgaa ctttccgggc acagcttcgg
      421 gaatctgttt attacggtaa tgaccaagct gaccggtgat tttgagaagg caatcaagga
      481 gtccagccgg gtcctggcca tcaggggaca ggtaattccg gcgaccttaa ataaggtttc
      541 gcttgttgcc aggtataagg acggctcaac tatagaaggg gaggcctcta taccggaccg
      601 gaaaaggcag atttcccgcg tatctctgaa ccctgaagat gcccaggcta cccctgaagc
      661 aataaaagcg attatgcagg cccaggcgat tgtcctgggt ccgggcagtg tatacaccag
      721 cattattcct aatcttctta ttaaggaaat aagcgaggct ataataaaga gcccggcctt
      781 aaagatttat atctgcaatg tgatgaccca gcccggggaa accggcggct acagcgccta
      841 tgaccatatc cgggcgttaa ccgagcattc cacgggaaag attattgact attgcctggt
      901 aaattcccgc gaggtccccc gggaaatgct ggaaaggtat agacagactg actcttatcc
      961 ggttagcgct gacatccaga agatcaggca tgccggatac cgggtgattg aagatgatat
     1021 tattaatatc cagaattatg tccgtcatga ttccggcaag ctggccaaga tcgtaatggg
     1081 cctggtccag gaaaactact aacgcgctga tgtatacggt aaagaaaaaa ttagtggtca
     1141 agaataaact cggcctgcat gcccggcccg cggccttgtt tgtccagata gccaataaat
     1201 ttgagtcgga tatcgcggtg gccaaggacg agcaggaggt taacggcaag tccattatgg
     1261 gcatacttat gctggccgcg gagagagaca gcgtcatagt tattaccgcc accggcaaag
     1321 acgcccttca ggcggtggag ggactggaag atataatcgg gattgaggat atagaccgta
     1381 aattcagcca ccgcgtttca gggccgttac aggatacttt aaggcaggat aataaggtga
     1441 accggaaatg acagaattaa agggaatagc cgcttcaggc ggaattgcca taggcaaggc
     1501 ctatctttgg gccaaggagg aatttgttat ccccaggcag ccaatctctg aagaccagat
     1561 agcccggcag atccagcttt ttgaagaggc gctcataaag acccgccacg aaatcctgga
     1621 actgcagaag aagatatccg cggaaatggg ccagagcgag gccgagatat ttgacgccca
     1681 cttgctggtc ctggaagacc ggatgctcat tgaggatgtc atctcccaga tgaagagcga
     1741 gaagctcaat gccgcctata tcttccagaa tgtcctcaag aaatatgtcc aggtattcct
     1801 gaagatagaa gacgaatatc ttaaggagag ggtaagcgat atcaatgacg taggcaggcg
     1861 catcctgcgc aatctcttag gcaaaagcgc caaacgtttt gaagacctcc aggaaaaggt
     1921 gatcttggtg gcccatgacc tttctccctc tgataccgcg gcaatgcaca aaaagaatat
     1981 cctggccttt gttactgatg tcggaggcaa gacttcccat accgcgatta tggccaagtc
     2041 tatggagatc ccggcggtgg ttggcctgga aaaatctata ttaagcataa aaaccgggga
     2101 tatcttaatc gtaaacggaa gcaccgggct ggtgctggtt aatccggacc aggatgcctt
     2161 agataattat cagaaagaag aggccgcgtt taaggatatc acccggcgct ttatcctgct
     2221 taaagaccag ccggcagtca ccctggacaa caggctggtc cagttggccg ctaatattga
     2281 gcttcctgat gagatccctt ccatccttga gcatggggca gagggcatcg gcctttaccg
     2341 caccgagttt ttttatatga accgcacgga tatcccttcg gaagaagagc attatcaggc
     2401 ctataaattt gtggcccagg cggttaagga taatccggta attatccgga cattggactt
     2461 gggcggagac aagtttttgt cgcatctgga gatcccccgg gatatgtctc ctttcttagg
     2521 ctggagggcg atccgttttt gcctggcccg tccggatata tttaagatcc agctaagggc
     2581 gatattaagg gcctcggtgc acggtaacct gaagttgatg tatccgatga tttccgggat
     2641 tgaggaactg cgcaaggcca atatcctgct tgaggagtgc aaaaaggaac tgaaagaaaa
     2701 aggccttgcc tttaacgatt caatggaagt gggggcgatg attgaggtgc cttcggcggc
     2761 aatgaccgcg gatatcatcg ctaaagaggc ggatttcttc agtatcggca ccaatgacct
     2821 gatccagtat tccatagccg ttgaccgcag taatgagaaa gtggcctatc tttatgaacc
     2881 ggcccatccg ggtgtgcttc ggctgatcaa gaatattatt gacgtcggcc accgcgccgg
     2941 aatctgggtg gggatgtgcg gagagatggc cggggacccg ctttttaccc tgatactttt
     3001 ggggctgggg ctggatgagt tcagcatgcc ttcaattatg gtcccggaga taaagcatat
     3061 catccgttcg gtaaatatgg cccaggctaa gcagatagcc gaggaggctg tttctcttcc
     3121 caccgcggcc gaggtggaga gttttgttaa tctcaagctt aagcaattaa gcggtactga
     3181 atagttattg tatgcgggat ttaagccggg cttccgggct ggacttaagg ttggatagcc
     3241 gaaaacacgc cttggttttt ggcaaggctg ttgtccactc tctcgcgaaa gaatccggtt
     3301 ctttgaaatg ccgtttatat ggcgacgcgc gcggaattaa ggatacggat atcctgtata
     3361 agaataaact aaaatttgac ctaactttgc tttctccagg caggatcggc aaacatctgc
     3421 ctatgaccct tggcgtttat ccgcgggacg gacggacaaa gttgtatgaa gttatttccg
     3481 gacaggcctg gtttctcctg cagaaagaga ataaagacga ctgccggata atagatgatg
     3541 ttattttgct taaggccagg gagggcgaaa agataatcct gcctcctggt tacgggcatg
     3601 tcttgattaa ccccggaaaa gatgacttgg ttgccgcttg tttctcatct cgggccttaa
     3661 tctgcgagag tcagaagtat ctgcgggcca aaggcggggt atattttata tttaaggata
     3721 atctgggaga gttctttcag cctaatccat tttaccggga agtcccttat atgagaatag
     3781 cctgtccttc ctcgcaggta gaaaggtttg gcctaaactc cgcggagacg ctttacaatc
     3841 tggcgtctaa ggggatagaa aaattagatt tcctgaataa tcccgcgaaa tatgattatt
     3901 ccgatgtctt ggagtttctc taaccgatag atatgaaggc tctgattttg gctgccggct
     3961 acggcaccag gatgtatcct ttgaccaaag cctgccccaa gccgctttta ttggttggcg
     4021 caaggccgat attggattat gccttagaaa aattagtccg gctcaagggt ttgagagagg
     4081 caattatagt aactaacgac aagttctttc taaattttaa aaactgggcg gctaagtccg
     4141 agaacaggta tggcttggcc cttaaggtat taaacgacgg aaccaaaagc gacgctggaa
     4201 ggttgggggc cataggggat ataaattttg ccttaagccg ggaaaatgcc tgggatgact
     4261 tgataatctt cggcggggat aacctttttg aggacgattt atcagctttc ttgaaatcag
     4321 cgctaaagct gtccccggcg gttaccatc
//
LOCUS       DATDUB010000126         6361 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_750201, whole genome shotgun sequence.
ACCESSION   DATDUB010000126 DATDUB010000000
VERSION     DATDUB010000126.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 6361)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6361)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6361
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_750201"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..486)
                     /locus_tag="VJA84_02490"
     CDS             complement(<1..486)
                     /locus_tag="VJA84_02490"
                     /inference="COORDINATES: protein motif:HMM:NF015662.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41025.1"
                     /translation="MRIRNIRILTWILFIILLAGLFNLQVLGGETYFSLSNRNCIRVI
                     PYEGIRGRIFDRAGEVIVDNRVSYNISVLYNEFKKSPDSKAKLAQILGKPAAWIDKTV
                     KSNFVSAFTPVVLVKDAPKKTAFFIEENKFNLPGVMVQTVPARRYPYGNIASHILGYL
                     AP"
     gene            complement(537..1025)
                     /gene="mreD"
                     /locus_tag="VJA84_02495"
     CDS             complement(537..1025)
                     /gene="mreD"
                     /locus_tag="VJA84_02495"
                     /inference="COORDINATES: protein motif:HMM:NF016019.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreD"
                     /protein_id="HLD41026.1"
                     /translation="MSGIGNFFKAAVFIFSILTLQLNVFPVLDYIPVKPDLFLVLAVA
                     CGIRNSPLFKAVSWGIFLGLLKDIFSIRFFGFNSFTFAVDAFIISLLCRRFYKESLGF
                     NLILLAGAGLLNCLLFSLVSGRLYFVIGMAEAALNCLFFIVIVRLDRTIQEPGFPAQA
                     GE"
     gene            complement(1009..1785)
                     /gene="mreC"
                     /locus_tag="VJA84_02500"
     CDS             complement(1009..1785)
                     /gene="mreC"
                     /locus_tag="VJA84_02500"
                     /inference="COORDINATES: protein motif:HMM:TIGR00219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HLD41027.1"
                     /translation="MFKTKSSPPLFFAVSFIALLSVFLIILKTKPKILDWFYLPLEAG
                     SSFIRDTRAIVTYKFILNENYRLRDQIGKVKADSALNEELLRENQRLKKLISFKEQFQ
                     AKAVCARVIAREPGNWSRGVVLNKGANDRINIGDFVLAQEALAGRVIEVSARAAKVIL
                     INDPESSVAAFIQRSREEGLVSGTLLGGVIMRYLEKDSDCRPGDAVMVSRLDQAAPYP
                     VLIGTVKEVKEEPQGLAKYCVVALAADLRRIEEVLVVGYR"
     gene            complement(1806..2888)
                     /locus_tag="VJA84_02505"
     CDS             complement(1806..2888)
                     /locus_tag="VJA84_02505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011340768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0000902 - cell morphogenesis [Evidence
                     IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HLD41028.1"
                     /translation="MSKIGRFFNGLRRKTNYVLGLFSNDMGIDLGTATTLVYLKGEGI
                     VLCEPSVVAIERASNKVLAVGSEAKRMLGRTPGDILAIRPMKDGVIADFEVTEAMLRY
                     FIKKAQHRRVLARPRMVIAIPSGITEVEKRAVRESAERAGAGAIYLIEEPKAAAIGVG
                     LPINEPIGNMIIDIGGGTTEIAVISLGGMVFSRSIRIGGDEMDQTITEYLKKTYNLMI
                     GERTAEDIKIKIGSAYKLEEELSLEIKGRDLVAGLPKAITITSEEIRDALADPIRAIL
                     ESAKIVLERTPPELAADLIEHGIMMAGGGSLLRGLDRLISDETGLPVHIADDPLTAVA
                     MGTGKVLDEAAYFKRLTIPAKLQQLP"
     gene            complement(2957..3886)
                     /locus_tag="VJA84_02510"
     CDS             complement(2957..3886)
                     /locus_tag="VJA84_02510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41029.1"
                     /translation="MGDRSKGPVILLVILLIVAAAAAFLGFIALQKEKEINATLTEEN
                     RELEVKKRSAEKQAADLKKQIEGLNQEIGQQKAKLQDYENKISEINNELTSEKEAKES
                     ALSEVASIREASESARKDKAALETQLRSAQEELNSIRNQLTSLEGIKQELEQRLSSKP
                     KEAEVKVPAKSAPKPEGDGAASHSRSHKPEGDGAASNSRSHKVEEVKPGEVQLEKIVV
                     APNPQEEAPVVSSTVPLEGKVLVVNREYDFIVINLGQKDGVNLGDAFEVLRKDKSLGQ
                     AKVEEVRDTMSVATPGTKDMIKQIKEDDRVVRR"
     gene            complement(3975..4868)
                     /locus_tag="VJA84_02515"
     CDS             complement(3975..4868)
                     /locus_tag="VJA84_02515"
                     /EC_number="5.4.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009052453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HLD41030.1"
                     /translation="MDHNFTVEEEDSGRRIDLFLAAKIGEGYSRTAIQKTISAGAVLL
                     NNLPVKPCHKVALGDSVRITLPEAKYSPLIPQDIDFKIIYEDGDILVIDKPSGLVVHP
                     GSAIHQGTLVHGLLWHTADLSSINPARPGIVHRLDKDTSGLMVIAKNNPAHLNLVKQF
                     AGHRVKKKYIALVQGVVELDEGIIDLPIGRHKKDFRRQAVSFIDSKKAVTRYRVLKRL
                     KEATLLELVPRTGRTHQLRVHLAHIGYPILGDVKYGKKTDFPRLALHAAELGFFHPKD
                     NKLVTFSSPLPEEFNSFLKNC"
     gene            complement(4820..5536)
                     /locus_tag="VJA84_02520"
     CDS             complement(4820..5536)
                     /locus_tag="VJA84_02520"
                     /EC_number="2.4.99.-"
                     /inference="COORDINATES: protein motif:HMM:NF013915.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0008961 -
                     phosphatidylglycerol-prolipoprotein diacylglyceryl
                     transferase activity [Evidence IEA];
                     GO_process: GO:0042158 - lipoprotein biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase family
                     protein"
                     /protein_id="HLD41031.1"
                     /translation="MYPILFKFGFIQVYSYGLMVALAFLVCAFLLSKQTRLLGVEKDF
                     FWNMSGWLLLGGILGGRLLYIIFNLNYFRENPREILALWQGGLIWYGALAGGALSGII
                     YLKLKKVKLLKALDLIMPFAALGQAIGRIGCFLNGCCYGSPDLIIPVQLISSFNLTAI
                     FITLRLLQEKKHKEGDVLVIYLLLSSFERFMLEFLRNDSSRPYAGLTIFQLISVFIFL
                     GAVFLWIIISRLKKRIPAEG"
     gene            complement(5580..6032)
                     /gene="lspA"
                     /locus_tag="VJA84_02525"
     CDS             complement(5580..6032)
                     /gene="lspA"
                     /locus_tag="VJA84_02525"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007288395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase II"
                     /protein_id="HLD41032.1"
                     /translation="MPITVIALSSLILILDQISKFYISSALSLGQSIPVVRDIFHISL
                     VYNTGAAFGLFKNQKIFFIILTAAVVMYIIRDLFFHGSRYSLGRRVALGLILGWAAGN
                     FVDRLRLGYIIDFLDFRVWPVFNLADSAITVGIIILGCSLLKRAPGHP"
     gene            complement(6047..>6361)
                     /locus_tag="VJA84_02530"
     CDS             complement(6047..>6361)
                     /locus_tag="VJA84_02530"
                     /inference="COORDINATES: protein motif:HMM:NF013427.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TraR/DksA C4-type zinc finger protein"
                     /protein_id="HLD41033.1"
                     /translation="LTEDIKHISQDTLSKSQKEACGDISGYTLHMADVATDAYDREFS
                     LGLASNDREALIQINDSLKRIDEGKYGSCEQCGKPIAKTRLKALPFTSFCLKCQQTQE
                     KA"
BASE COUNT         1696 a         1690 c         1421 g         1554 t
ORIGIN      
        1 cggggccagg tagcctaata tatggctggc aatatttccg taaggatacc tgcgcgcggg
       61 gactgtctgg accatcaccc cggggagatt aaatttattc tcctctataa aaaaagcggt
      121 cttcttaggc gcgtctttaa ccaagactac cggagtaaag gccgagacaa aattactctt
      181 taccgtttta tctatccagg ccgcaggctt acccaggatt tgggctaatt tagctttact
      241 gtccgggctc ttcttaaatt cattgtaaag gacgctgata ttataagata cgcggttatc
      301 cacaatgacc tctcccgcgc ggtcaaagat ccttcctcgt atcccttcat aaggaatgac
      361 ccggatacag tttctattgc ttaaggaaaa atatgtttct cctcctaaaa cctggaggtt
      421 aaacaatccg gccagcaaaa tgataaacag gatccaggtt aatatccgta tgttgcggat
      481 gcgcatagaa aactatcggc tattgctttg taacaacata aattattaac attatgtcat
      541 tccccggctt gagcggggaa tccaggttcc tggatcgtcc ggtcaagccg gacgatgaca
      601 ataaagaaaa ggcaatttaa ggccgcctcg gccatcccta ttacaaaata caatctcccg
      661 gaaacaagac tgaacaggag acaatttagc aggcccgcgc ctgctaaaag gatgagatta
      721 aaccccaaag attctttgta aaaacggcgg cagagcagag aaattataaa agcgtcaacg
      781 gcaaaggtga aggaattaaa cccgaaaaag cggatggaga agatatcctt taacaaacca
      841 agaaagatcc cccaggacac ggctttgaaa agaggtgaat tcctgatccc gcaggccacc
      901 gccagaacca ggaataaatc cggtttaacc gggatataat ccaaaaccgg aaagacatta
      961 agttgaagcg taagaataga aaaaataaaa accgcggctt taaagaagtt accgataccc
     1021 gacaactaat acctcctcaa tccttcttaa gtccgcggca agagctacaa cacaatattt
     1081 agctaaccct tgaggctctt ccttaacctc cttaaccgtg ccgatcagga ccggataagg
     1141 cgcggcctgg tccaagcggg aaaccataac cgcgtccccg ggcctacaat cgctgtcttt
     1201 ttccaggtaa cgcattatca ccccgcccag cagggtgccg gaaactaagc cttcttcccg
     1261 gctcctctgg ataaaggccg ccactgaact ttccgggtca ttaatcaaaa tgaccttggc
     1321 agcgcgcgcg gaaacctcaa tgaccctgcc ggctaaagcc tcctgcgcca ggacaaagtc
     1381 acctatatta atccggtcat tcgcgccttt gttaagcaca acgccccggg accaattacc
     1441 gggttcccgg gcaatcaccc gggcgcaaac cgctttagcc tgaaactgct ctttaaaaga
     1501 aatcagcttt ttaagccgct ggttctcacg gagcaattcc tcattaagag cggaatcagc
     1561 tttaaccttg ccgatctgat ctcttaggcg gtagttctca ttaaggataa atttataggt
     1621 aactattgcc cgggtgtccc ggataaagct ggagccggcc tctaaaggca ggtaaaacca
     1681 atccaatatt ttaggttttg tcttgaggat aattaagaaa acactaagaa gggcgataaa
     1741 agaaaccgcg aagaataacg gcggggagga tttagtcttg aacacactat cacatctttt
     1801 agggtttaag gcagctgctg cagctttgcg ggaatggtca ggcgcttaaa ataggccgcc
     1861 tcatccagga ccttgccggt gcccatagcc acggcggtca ggggatcatc cgcgatatgc
     1921 acgggaagcc cggtctcatc ggatataagc cggtctaatc cccgcaaaag agaacctccc
     1981 ccggccatca taatcccatg ctcaatcagg tcagcggcca attccggcgg ggtcctttcc
     2041 aggactatct ttgccgactc taaaatcgcc cggataggat cagcgagggc atcacggatt
     2101 tcctccgagg taatagttat agccttaggc agtccggcca ccaggtccct ccccttaatt
     2161 tccaggctaa gttcttcttc cagtttatag gcggaaccaa tcttaatctt gatatcttcg
     2221 gcagtgcgct cgccaatcat caggttatag gtcttcttaa ggtactcggt aatagtctgg
     2281 tccatttcat cccctccgat acggatagag cgggaaaaaa ccataccgcc taaggagata
     2341 accgcgattt cagtagtccc gcctccgata tcaataatca tattgccgat aggctcatta
     2401 ataggcagtc ctacgccgat ggccgcggcc ttgggctctt caataaggta tatcgcgcct
     2461 gccccggccc gttccgccga ctcccgcacc gcccgtttct ccacctcggt tatccccgaa
     2521 ggtatggcaa tgaccatcct gggccgggcc aggacccggc gatgctgggc cttcttaatg
     2581 aaatagcgca gcatcgcctc ggtaacctca aagtccgcga tcaccccgtc tttcatcgga
     2641 cggatagcca ggatatctcc gggagtcctg cccagcatcc gcttagcctc ggatcccaca
     2701 gccaggacct tgttagaggc cctttcaata gccactaccg aaggctcgca aaggacaatc
     2761 ccttcgcctt taagatagac cagggtagtg gcggtgccca ggtctatccc catatcattg
     2821 gagaaaaggc ccagcacata attggtcttt cttcttaaac cgttaaagaa tctgccgatc
     2881 ttagacatag tatttgttaa caatcgcggg tctatagact atagtctata tttttttgac
     2941 tattgaccct gaattattat ctcctcacta cccggtcgtc ttccttgatc tgcttaatca
     3001 tatctttggt cccgggagta gccactgaca tcgtgtccct gacctcctcc accttggcct
     3061 ggccaagaga cttatctttg cgcaggacct caaaggcatc tcccaggtta accccgtctt
     3121 tctggcccag gttaatcaca ataaaatcgt attcccggtt caccaccagg accttgccct
     3181 ccaaaggaac agtggaagaa actacaggag cttcctcttg aggattggga gctactacta
     3241 tcttctccag ctggacctct cccggcttta cttcctcaac cttatggctg cggctattgg
     3301 aagccgcacc atcgccctct ggcttatggc tgcggctatg ggaagccgca ccatcgccct
     3361 ctggcttagg cgctgattta gccggaactt ttacctcggc ctcttttggc tttgaagata
     3421 atctttgctc taattcctgt ttaatccctt ccagggaagt caattgatta cggatactat
     3481 tcaattcctc ctgggctgac cttaattgcg tttccaaggc ggccttgtct tttctcgcgg
     3541 attccgaggc ctctctaatg ctggccacct cgctcaaggc gctttccttg gcctcctttt
     3601 cggaagtaag ctcattatta atctcggata tcttattctc gtaatcctgg agcttggcct
     3661 tttgctggcc gatttcctgg tttaggcctt ctatctgttt ctttaaatcc gcggcctgtt
     3721 tttccgcgga acgcttcttt acctccaatt ccctattctc ttcggtaagg gtggcgttga
     3781 tctccttttc cttctgtaaa gctataaagc ccaaaaacgc cgccgccgcc gctactatta
     3841 gaagaataac cagcaggata accggcccct ttgacctatc ccccataccc acctccattt
     3901 tttatgtcca tactacagac cctaaagtgt aattatagca atgagttgga taattgcaag
     3961 tatttttatt ttatttaaca atttttaaga aagctgttaa actcctccgg caatggggaa
     4021 gaaaaggtta ccaatttgtt atctttgggg tgaaaaaagc ctaattccgc ggcgtgcaag
     4081 gcaaggcggg ggaaatcagt ctttttaccg tatttcacat cccctaatat aggatagccg
     4141 atgtgggcca gatgcacccg cagttgatga gtcctgccgg tgcgcgggac caattccaag
     4201 agggttgcct ctttaagccg ttttaagacc cggtaacggg taaccgcctt cttagaatca
     4261 ataaaactca ctgcctggcg ccgaaagtcc ttcttatgcc tgccgatagg caggtcaatt
     4321 ataccttcat ccaattccac caccccttgg accagggcaa tatatttttt cttgacccga
     4381 tggccggcaa actgcttgac caaattaaga tgagcggggt tattcttggc gataaccatt
     4441 aacccagagg tatctttatc caagcggtgg actatcccgg ggcgcgcagg gttaatgctg
     4501 gacaaatccg cggtatgcca gagcaaaccg tggaccaggg tcccctgatg aatggctgat
     4561 ccagggtgca ctaccaagcc ggagggtttg tcaataacta agatatctcc gtcctcataa
     4621 ataatcttga aatcaatatc ctggggaata aggggagaat attttgcttc aggcagggta
     4681 atccggacgc tatcgcccaa ggccacttta tggcagggct taacgggtaa gttattcaat
     4741 aaaacagccc ccgcggagat tgtcttctgg atcgcggtgc gggaataacc ttcacctatt
     4801 ttagcggcca ggaacaggtc tatccttctg ccggaatcct cttcttcaac cgtgaaatta
     4861 tgatccataa gaataccgcg cctaagaaaa taaatacgct tatcaactgg aatatggtca
     4921 ggcccgcgta aggacgcgaa gaatcattac gcaggaattc cagcataaac cgctcaaaag
     4981 aagaaagcaa aagatagatt accagaacat cgccctcttt atgttttttc tcctgtaaaa
     5041 gcctcaaggt tatgaaaata gccgtcagat taaacgaaga aatcagctgg accgggatga
     5101 ttaagtccgg gctgccgtaa caacatccgt tcaaaaaaca gcctatcctg ccgatggcct
     5161 ggcctaaggc cgcgaaaggc ataatcaaat ccagggcctt aaggagcttc acttttttta
     5221 gcttgagata gattatcccg cttaaagccc cgccggccaa ggccccgtac cagataagcc
     5281 cgccctgcca aagggccagg atctcccggg gattctcccg gaagtagtta aggttaaaga
     5341 ttatatataa caatctcccg cctaagatac ctcccaggag gagccagccc gacatattcc
     5401 agaaaaagtc cttctccacc cccagtaacc gcgtctgctt agaaagcaaa aaagcgcaga
     5461 ccaaaaaagc cagggccacc atcaggccat agctgtaaac ctggataaaa ccgaatttaa
     5521 aaaggatagg atacatattt gatgtcaccc acttgtagtg gccgcacagt gtgcggccac
     5581 tacggatgcc ctggcgctct cttcaacagt gagcaaccta agattattat ccccacggtg
     5641 atagcgctgt cggccaggtt aaataccggc cagacgcgaa aatccaggaa atcaataata
     5701 taacctaagc gcaggcggtc cacaaagtta cctgccgccc agcccaggat caggcctaag
     5761 gcaaccctcc ggcccaagct ataacggctg ccgtgaaaaa ataaatcccg gatgatatac
     5821 attaccaccg ccgcggttaa gatgatgaaa aatattttct gattcttaaa caggccgaag
     5881 gcggccccgg tattataaac taaagatata tgaaatatat ccctgacaac cgggatagac
     5941 tgacctaacg aaagggctga tgagatataa aatttactta tctggtctaa gatgaggatt
     6001 aaactgctta aagcgattac cgtaataggc ataacgccct tagcgcttaa gccttctcct
     6061 gggtctgctg gcacttaaga caaaaagagg taaagggcag ggccttgagc cgggtcttgg
     6121 ctataggctt accgcactgc tcgcaggaac cgtattttcc ctcatcaatc ctcttaagag
     6181 agtcatttat ctgaatcagg gcctcccggt cgttagaggc caggcccagg gaaaactccc
     6241 ggtcataagc gtcagtagcc acatccgcca tatgcagggt atacccggag atatctccgc
     6301 aggcctcttt ctgggatttg ctcaaggtat cctgggagat atgcttgatg tcttcggtga
     6361 g
//
LOCUS       DATDUB010000127         5565 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_91681, whole genome shotgun sequence.
ACCESSION   DATDUB010000127 DATDUB010000000
VERSION     DATDUB010000127.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 5565)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5565)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5565
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_91681"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1376
                     /locus_tag="VJA84_02535"
     CDS             <1..1376
                     /locus_tag="VJA84_02535"
                     /EC_number="3.1.4.-"
                     /inference="COORDINATES: protein motif:HMM:NF024878.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="HD-GYP domain-containing protein"
                     /protein_id="HLD41034.1"
                     /translation="KFKVTLLLIVSLLSITTLSIFLVYKHTLDSQFQELRNRLMAIAQ
                     TAVLAIDVDTLLEVPLNKEGINSPQYKVIADKLKAVKEANLSVWYIYIMAKTEREGVW
                     QFVVDPFPSGRMGRKAVVTSYPGDRYEAGRFPGMLKGFSGPSADKKLEQDEWGITLSG
                     YAPIRDKNGSPVAVLGVDITADSVYLTQKEIERRAVFVLIVGMIISLALGTFISAKVA
                     HPVEKLREATSRIASGSLEYRVQISGRDEIGELARAFNKMAGDLDESRGKLMDYFYRT
                     VQSFVRILEAKHQYTRGHSERVADYAQKVALKMGLSAEKVKLLGEIAILHDIGKIGVQ
                     ESILNKPGKLTESEWAEIRRHPLIGEDILKPIILNEEMLAIVRGHHERYDSNGYPDKI
                     GAGSINTFAAIVSVADAYDAMTSSRSYRQALSRPEAIEEIRENRGRQFNPEIVDVFLE
                     VLNEEKI"
     gene            1473..1631
                     /locus_tag="VJA84_02540"
     CDS             1473..1631
                     /locus_tag="VJA84_02540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014063361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rubredoxin"
                     /protein_id="HLD41035.1"
                     /translation="MDKYRCTVCGYIYEPEKGDPDNGVNPGTAFEDLPDSWLCPECGV
                     GKDMFEKI"
     gene            1709..2191
                     /locus_tag="VJA84_02545"
     CDS             1709..2191
                     /locus_tag="VJA84_02545"
                     /inference="COORDINATES: protein motif:HMM:NF012436.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008199 - ferric iron binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HLD41036.1"
                     /translation="MGRKAREIADIDLKDLIKDLNKAYCDEWLAFYAYWYMAKSVEGK
                     GYEDMEEFLSKIAKDELEHAGELEERIVELGGLPSNNISNLEKSANAPYPGVMKDLAD
                     YDEIIKLVEDAEAGAIEVYNKLAKKTFGKDHDTYQLVTHILGEEIGHEEMFENLEVKK
                     "
     gene            2213..2674
                     /locus_tag="VJA84_02550"
     CDS             2213..2674
                     /locus_tag="VJA84_02550"
                     /EC_number="1.-.-.-"
                     /EC_number="1.4.3.5"
                     /inference="COORDINATES: protein motif:HMM:NF013412.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004733 - pyridoxamine phosphate oxidase
                     activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HLD41037.1"
                     /translation="MAMLSPEAVHFFKKQGFVIVSTLDKDGSIHNSCKDIVRISQDGA
                     VYLLDLFMGRTYRNLSERPVISISSADEHSFSGYSLKGRAKIIPREELEPEIIQAWDQ
                     TIISRVSRRLIRNVRGEKGHHAHPEALMPKPKYMIRMDVEEVIDLTPKHLK"
     gene            2687..3595
                     /locus_tag="VJA84_02555"
     CDS             2687..3595
                     /locus_tag="VJA84_02555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014406803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HLD41038.1"
                     /translation="MKIYDLVIIGAGPAGITAAIYASRKRLDTLVISKDIGGQAALSG
                     DVENYTGYQFISGPELALKFEEHLKKFDITLKEGEAVLELGKAGNLVSVRTDKGSYEA
                     RSAIIASGKRSRELGCPGEKEFKNKGLTYCATCDGPLFSGKDVAVIGGGNSALDAAIQ
                     LIRIANKIYLVNIADELTGDTVMQEIVKLSPKITILNGTRVSAVLGDKMVHSIRVNSA
                     DKEELLAVKGVFVEIGLIPNSEFVPGVEKNDLREIKVNSYNETNVPGIFAAGDVTDVP
                     EKQIVIAAGEGSKAALGVFKYLIHNT"
     gene            complement(3735..>5565)
                     /locus_tag="VJA84_02560"
     CDS             complement(3735..>5565)
                     /locus_tag="VJA84_02560"
                     /inference="COORDINATES: protein motif:HMM:NF013104.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HLD41039.1"
                     /translation="LVFCGTATTIISGAVAERMRFKAYLVTAAIVSCLIYPVFGHWAW
                     NGLGNNAYSGWLGKAGFRDFAGSTVVHSLAGWVSLSALILIGPREGRFPKHAPARKIS
                     GHDIPVSVLGVFLLWLGWLGFNGGSMLALNNAVSRIITNTILAGASGMVVTLAIGWSV
                     KKMPHIEFVINGSLAGCVAITASCYFVDAAASVVIGAVGGLVMLISESLLERFRIDDA
                     VGAIPVHLGAGIWGTLAVAIFGSPALINTGLSPLQQLSAQGLGIAVCGLWALGISFIA
                     FYLLNRFIRLRVSPEEEFTGLNISEHGSSTELLDFFRVMERQIETGDLSLRAPVEPFT
                     EVGQIARRYNSLIETLENTSRELKDAYLKLRQNQSQLIQSAKMAAVGQLSSGIAHEIN
                     NPLAGALNTLQLLKMQLEQAENLDAADLKKLLNTVEESLSRCRKITTSLLSFSRSSKG
                     LFQPISVNEAVRKIIDILEYEIKLDNIAIQTLLEPELPLVMGDSQFIQQVIFDLISNA
                     RWALLHKTPSENQLKTITITSSYDSQVQNVILNIADTGPGIPEENLAKIFEPFFTTKP
                     EGEGTGLGLSIVAHIIKEHQGTIEVQSQPNLGTTFKISLPACR"
BASE COUNT         1439 a         1256 c         1546 g         1324 t
ORIGIN      
        1 ttaaattcaa ggttaccctg cttttgattg tctcccttct ttctatcacc accttgagca
       61 ttttcctggt ttataagcat accctggatt cccaattcca ggaattaagg aacaggctga
      121 tggccattgc ccagaccgcg gtattggcta ttgatgtgga taccctgctg gaagtgccct
      181 tgaataagga gggaatcaat tccccgcaat ataaggtcat tgccgacaag ctgaaggcgg
      241 taaaggaggc gaacctttcg gtttggtata tttacattat ggccaagact gaaagagaag
      301 gggtttggca gtttgtggtt gacccttttc catccggccg gatgggcaga aaagcggtgg
      361 ttacttctta tccgggagac cgctatgaag ccgggcgttt tccggggatg cttaagggtt
      421 ttagcgggcc ttccgcggac aagaaattag agcaggacga atgggggatt accttgtccg
      481 gatacgcccc gatcagggac aagaacggca gtccggtggc ggtgctggga gtggatatta
      541 ccgcggattc ggtttacctt acccagaagg aaattgagcg ccgggcggtc tttgttttga
      601 tagtggggat gattatttcc ctggcgctgg ggacgtttat ctcggctaag gtggcgcatc
      661 cggtggaaaa gttaagagag gctaccagcc ggattgcctc cggaagcctg gaataccggg
      721 tccagatatc cggccgggat gagatcgggg aattggccag ggcgtttaat aaaatggccg
      781 gggatctgga tgagtcccgc gggaagctta tggactattt ttaccgcacg gtgcagtctt
      841 ttgtgcgcat attggaggcc aagcaccagt atacgcgcgg ccattccgag agggtggcgg
      901 attacgccca gaaggtagcc ttaaaaatgg gcttatccgc ggaaaaggtg aaattattag
      961 gggaaatcgc catacttcac gacatcggca agatcggggt ccaggaaagc atattgaaca
     1021 aacccggaaa gctgactgaa agcgagtggg cggagatccg ccggcacccc cttatcggcg
     1081 aagatatcct gaagccgata atcttaaatg aagagatgct ggccatagtc cgcggccatc
     1141 acgagcgcta tgattcaaac ggttatccgg ataaaatcgg cgccgggtct attaatacct
     1201 ttgccgcgat tgtttcggtg gcggatgcct atgacgcgat gacctcatca cgctcctacc
     1261 ggcaggcctt gagccggccg gaggcgattg aggaaatccg cgaaaaccgc ggccggcagt
     1321 ttaacccgga gattgtggat gtgtttctgg aggtgttaaa cgaagaaaaa atataggttg
     1381 gcggagataa atatgatata attattttaa taaactgcgg tatgaatagt catgacccct
     1441 ccacttgtgg gaggggttag gggagggggg agatggacaa atatcgctgc acagtatgcg
     1501 ggtatattta cgagccggaa aaaggcgacc ccgacaacgg ggtcaatccg ggcacggcct
     1561 ttgaggactt gccggatagc tggctttgtc cggagtgcgg ggtgggtaag gatatgtttg
     1621 agaagatata atcgtaatgt aggggcagac ctatgtgtct gcccaagaca gtagcggcgc
     1681 gatttatcgc gctaaaaaag gaggaaaaat gggaagaaaa gcgagagaga tcgcggatat
     1741 tgatttaaag gacttgatta aggacctgaa caaggcttat tgcgacgagt ggctggcatt
     1801 ttatgcctat tggtatatgg ccaagagcgt ggaaggcaaa ggctatgagg atatggaaga
     1861 gttcttaagt aaaatcgcta aggatgaatt agagcatgcc ggggaattgg aggagaggat
     1921 cgtggaatta ggcggtcttc cctcaaacaa tatcagtaac ctggaaaaga gcgctaatgc
     1981 tccgtatccg ggagtgatga aggatctcgc tgattacgat gagattatca agctggtgga
     2041 agacgccgag gccggggcaa ttgaggtcta taacaagctg gccaaaaaga cctttggcaa
     2101 agaccatgac acctatcagc tggtaaccca tatccttggg gaagagatcg gacatgagga
     2161 gatgtttgag aatttagagg tgaagaagta aatttcccct ccccttgttg ttatggctat
     2221 gctttcgcca gaggcggttc atttctttaa gaaacagggt tttgttatcg tctccaccct
     2281 ggacaaagac ggcagtatcc ataattcctg caaggacatt gtccggataa gccaggacgg
     2341 ggcggtctat ctgctggacc tgtttatggg caggacctac cgcaatctct cggaaaggcc
     2401 ggttatcagc attagctcgg ctgacgaaca ttcctttagc ggatattccc taaagggcag
     2461 ggcaaagata atcccgagag aagagcttga gccggagatt atccaggcct gggaccagac
     2521 gattatcagc cgggtaagcc gccggcttat aagaaatgtc cggggagaaa aaggccatca
     2581 cgcccatccc gaggcgctta tgcctaaacc caaatatatg atcaggatgg atgtggagga
     2641 agtgattgac ctcaccccca agcacctgaa ataatattcc ccccctatga aaatttacga
     2701 tttggttatt atcggcgcgg gcccggccgg gatcaccgcg gctatttacg cctccagaaa
     2761 gagattagac accctggtga tatccaaaga catcggagga caggcggcct taagcgggga
     2821 tgtggaaaac tataccggtt atcagtttat cagcgggccg gagctggcct taaaatttga
     2881 agagcacctc aagaagtttg atattacctt aaaagaaggt gaggctgttc ttgagcttgg
     2941 taaggctggg aatttagtca gcgtccggac tgataagggg tcttatgaag ctcggagcgc
     3001 gataattgcc tcgggtaaaa ggtcccggga attagggtgc ccgggagaaa aggagtttaa
     3061 gaataagggg cttacctatt gcgctacctg tgacggcccg cttttttccg gcaaggatgt
     3121 ggcggtgatc ggtggcggca attctgcctt ggacgcggca atacagctta tcaggatagc
     3181 caataagatt tacctggtga atattgccga tgagctgacc ggggacacgg taatgcagga
     3241 gatagtaaag ttaagtccta agataactat tttaaacggc acccgggtca gcgccgtgtt
     3301 gggagataag atggtccatt ccatccgcgt gaatagcgcg gataaagagg agctattggc
     3361 ggttaagggg gtatttgtgg aaattgggct tatccctaat tccgagtttg tcccaggcgt
     3421 agaaaagaat gaccttagag aaatcaaggt caattcttac aatgagacta atgtccccgg
     3481 gatatttgcc gccggggatg ttaccgatgt cccggagaaa cagatcgtga ttgccgccgg
     3541 cgaaggctcc aaggccgccc ttggggtatt taaatatctc atccacaata cctaatgtag
     3601 tgagtctaac gcttctttac atttgaagcg tgcttattag caggattgtc attcccgcga
     3661 aagcgggaat ccagactgga ttgtccggtt aaaccggaca atgacataag taaagatatt
     3721 tctgactcac tacactaacg gcaggcaggc aaagatattt taaaggttgt tccaaggttc
     3781 ggttggcttt ggacttcaat ggttccctgg tgctctttaa taatatgggc aacaatggat
     3841 aggcctaagc ccgttccctc gccttcaggt ttagtagtaa aaaacggttc aaatattttc
     3901 gcgaggtttt cttcaggaat gcccgggccg gtgtccgcaa tgttgagaat aacattttgg
     3961 acctggctgt cgtaactgct ggttatcgtg attgtcttta gctgattttc tgacggcgtt
     4021 ttatgcaaga gcgcccacct ggcattggaa ataaggtcaa agataacctg ctgaataaac
     4081 tgggaatctc ccatgaccaa aggcagttcc ggctcaagca gggtttggat ggcgatattg
     4141 tctaacttta tctcatactc tagaatatca ataatttttc gcactgcttc attcacggaa
     4201 atgggttgaa ataatccttt ggatgagcgg gaaaagctca ataaggaggt ggttatcttc
     4261 ctgcatcgcg agagggattc ctcaaccgtg tttaagagct ttttcagatc ggcggcgtct
     4321 aaattttctg cctgctctaa ctgcatttta agcagttgca gggtattcaa ggccccggct
     4381 aagggattgt ttatttcatg cgcgatcccg ctggaaagct gtcctaccgc ggccatctta
     4441 gcggactgaa taagctggct ctggttctgg cgcagtttca ggtaggcgtc ttttaattcc
     4501 cgggaagtat tctccaatgt ctctatgagg ctgttgtaac gccgggcaat ctggccaact
     4561 tcggtgaagg gctcaacggg cgctcttaag cttaaatcgc cggtttcaat ctgtctttcc
     4621 attaccctga aaaaatccag aagttctgtg cttgagccgt gttcagagat attgagcccg
     4681 gtaaattctt cttccggact gactctaagg cggatgaaac gattgagaag ataaaacgcg
     4741 ataaagctta tccccaatgc ccaaagcccg cataccgcta tgcctaagcc ttgggcggat
     4801 aattgctgga gagggctaag gccggtatta atcagagcgg gagagccaaa tatcgccact
     4861 gccagtgtcc cccaaatccc cgcgcccaga tgcacgggta tggcccctac cgcgtcatca
     4921 atacgaaaac gttctaaaag cgattcgcta ataagcataa ccagtccgcc cacggccccg
     4981 atcaccacac ttgccgccgc gtctacaaaa tagcaggagg cggtaatggc tacacagccg
     5041 gccagcgagc cgttaatcac aaattctatg tgcggcattt ttttcacgct ccagcctatc
     5101 gccagggtga caaccattcc gctggccccg gccaggatgg tattggtgat aatgcgggaa
     5161 accgcgttgt tcagcgctaa catgcttccg ccgttgaaac ccaaccatcc caaccaaagc
     5221 aaaaataccc ccaagaccga gaccgggata tcgtggccgg agatctttcg cgccggcgcg
     5281 tgtttgggaa atctgccctc gcgagggccg ataaggatca atgctgataa ggaaacccat
     5341 ccggcgaggc tatgcactac cgttgagccg gcaaaatccc ggaaccctgc ttttcccagc
     5401 cagccgctgt aggcattgtt tccaaggcca ttccaggccc aatggccaaa gaccggatag
     5461 attaagcagg agactatcgc ggcagttaca aggtaagcct tgaagcgcat ccgttccgcg
     5521 accgcgcctg aaataatggt agtggctgtc ccgcagaata ccaat
//
LOCUS       DATDUB010000128         3502 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_2102531, whole genome shotgun sequence.
ACCESSION   DATDUB010000128 DATDUB010000000
VERSION     DATDUB010000128.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3502)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3502)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3502
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2102531"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(235..2790)
                     /gene="clpB"
                     /locus_tag="VJA84_02565"
     CDS             complement(235..2790)
                     /gene="clpB"
                     /locus_tag="VJA84_02565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013706468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent chaperone ClpB"
                     /protein_id="HLD41040.1"
                     /translation="MRLEKFTIKAQEAIQEAVSLAKGLNHQQADNEHLLLALLKQEES
                     IIAELLAGSGLNTASLTREIESDLKGRSKIYAKTQEVYFSARMNNLLPNAEKEAKQLG
                     DEYVSVEHLFLAMLEDPGLLAKRHLNREAVLSELSKIRGSQRISDANPEAKYKALEKY
                     SRNLTDLANRGKLDPLIGRDEEILRLIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQR
                     IINQDVPEGLKEKQVVALDLGALIAGAKFRGEFEDRLKAVLKEIQAQAGKIILFIDEL
                     HTVVGAGSAEGAVDASNMLKPALARGELRCIGATTLDEYHKYIEKDAALERRFQPILV
                     GEPTVEDTISILRGLKERYEAHHGVRIKDSAIIAAATLSNRYISERFLPDKAIDLIDE
                     AAASLRIEIDSKPQELDRTERRIMQLEIERQALKKEKDQNSLDRLKKAEKEIDSLKEK
                     SAGLNQQWKSEKEAIRKIQELKNKIEDLKAEEKKYERSGNLDKVAEIRYGRLLELQNE
                     LEAENKGPQKLKKSKGMLKEEVDEEDIARVISKWTRIPVNKLLEGEIEKLLKIEERLK
                     SRVVGQDEAVEAVSRCIRRYRSGLGDPNRPLGSFIFMGPTGVGKTELAKSLAWFLFDD
                     EQAVIRIDMSEYMEKHTVSRLLGAPPGYVGYEEGGQLTENIRRRPFSVVLFDEIEKAH
                     PEVLDVLLQILDDGRATDGQGRIVNFKNTLIIMTSNLRDKEELKNRFRPEFLNRIDEI
                     VIFKSLGVEEIKKIIDIQLDILKKRLEDKKISFEASDKAKEFLAKAGYDPDYGARPLK
                     RTIQKYIQDPLSLKLLNGEIKDTDKIEAMLAAETKNVKKGQAALDKEIVFVKI"
     gene            complement(2834..>3502)
                     /locus_tag="VJA84_02570"
     CDS             complement(2834..>3502)
                     /locus_tag="VJA84_02570"
                     /inference="COORDINATES: protein motif:HMM:NF014474.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase"
                     /protein_id="HLD41041.1"
                     /translation="LVSLVGYTNAGKTTLLNSLVNEHQLADDSLFTTLDPLSRILILP
                     NRQKIILSDTVGFLHNLPHHLIEAFKATLEDVREADLLIHVLDVSHPLRYSYYESVNQ
                     VLAELECQGKNIIIALNKIDKIEDQNWIERYKQDFPESLVISALKKESLEQLLNTISQ
                     KVSQTMERVELTIPLDKMGLVDMIYKEGKVEKARYTSKSVIINAFLPVAMTKKLSEFS
                     KKEI"
BASE COUNT          776 a          904 c          767 g         1055 t
ORIGIN      
        1 gcttaccgcc tccgcggtac ggatataatt atctatcacc gcggaaagca cctgccggtt
       61 acgggcatcc ttattattat tctttatcat tggtttactt tacgctcatt ttgtcattgc
      121 gaggaatccg ccgaaggcgg atggcgaagc aatccagtcg gagattgctt cgccccttcg
      181 gggctcgcaa tgaaagcaag aaaccttttt aacgttatca attttaacct aaacctatat
      241 tttaacaaaa acaatttctt tgtcaagagc ggcctggccc tttttgacat tcttggtttc
      301 cgcggccaac attgcctcaa tcttatccgt atcctttatt tccccgttta agagcttcag
      361 cgacaagggg tcttgaatat atttttggat agtcctcttt aacggccggg ccccgtagtc
      421 agggtcatag ccggctttgg ccaggaattc cttggcctta tcgctggcct caaaggatat
      481 ttttttatct tctaaacgct tcttaaggat atccagctgg atatcaatta tcttttttat
      541 ttcctcaacc cctaaactct taaaaatgac tatttcatca atacgattta agaattccgg
      601 gcgaaagcgg tttttcagct cttccttatc ccttaaatta gaggtcataa ttatcagggt
      661 gtttttaaaa ttaactatcc ggccctggcc atcggtagcc cgtccatcat ctaaaatctg
      721 cagtagcaca tccaggacct ccggatgggc cttttcaatc tcatcaaaaa gcaccaccga
      781 gaaaggcctg cgccggatgt tttcggtgag ttggccgcct tcttcatatc ccacatagcc
      841 gggaggcgcg cctaaaagcc gggagaccgt atgtttttcc atatattcgg acatatcaat
      901 ccggatgacc gcctgttcgt cgtcaaataa gaaccaggcc agggatttgg ctaattcggt
      961 ttttcccacg cctgtaggcc ccataaagat aaacgagcct aaaggccggt tagggtcgcc
     1021 cagccccgag cggtaacgcc ggatacatct ggataccgcc tctaccgctt catcctggcc
     1081 caccacccgg cttttcagcc gttcttcaat cttgagcaat ttctcaatct ctccttctaa
     1141 aagcttattc accgggatac gggtccattt ggagatgacc cgggcgatgt cttcttcatc
     1201 cacttcttcc ttaagcattc ctttggactt ctttagtttc tgcgggcctt tattttccgc
     1261 ctctaattca ttctgcaatt ctaaaagccg gccataacgg atctccgcca ccttgtccag
     1321 attcccggag cgctcatatt tcttttcctc ggcctttaag tcctcaatct tattcttgag
     1381 ctcctggatc ttcctgatgg cctctttctc ggatttccat tgctggttta gccccgcgga
     1441 tttttctttc agggaatcaa tctctttttc cgctttcttt aagcggtcca aggaattctg
     1501 gtccttttct tttttcaggg cctggcgctc tatttccaac tgcataatcc tgcgttcagt
     1561 ccggtccaat tcctggggct tgctgtctat ttcaatgcgc agggatgcgg ccgcctcatc
     1621 aatcaagtca atggccttgt ccggcaggaa gcgctcgctg atatagcggt tagacaaggt
     1681 ggccgcggca attatggctg aatcctttat cctcaccccg tgatgggctt catagcgttc
     1741 cttaaggccg cgcaagatgc tgatggtatc ttctactgta ggttcgccca ctaaaatcgg
     1801 ctggaaacgg cgttccaggg ctgcgtcttt ttcaatatat ttgtggtatt catccagggt
     1861 ggttgccccg atacagcgca gttccccgcg ggccagggcc ggcttgagca tattagaggc
     1921 atccaccgcc ccttcggcag agcccgcgcc cactaccgtg tgcagttcgt caataaaaag
     1981 gatgattttc cctgcctggg cctggatttc ttttaatacc gccttgagcc ggtcctcaaa
     2041 ctcgcctcta aactttgccc cggcaatcaa ggcccctaaa tccaaggcca ctacctgttt
     2101 ttctttcagg ccctccggga catcctggtt gattatcctt tgggccaggc cttccacaat
     2161 agcggttttt cccacccccg gctcgccgat taagaccgga ttatttttgg tccggcggga
     2221 gaggacctgg attaaacgca ggatttcctc gtccctgccg attagcgggt ctaattttcc
     2281 tctattggct aagtcagtaa ggttacggct gtatttttcc agggccttgt atttggcctc
     2341 ggggttggca tcgcttatcc tctgggagcc gcggattttg cttaattcgg acaagaccgc
     2401 ctcccggttt aaatggcgct tagccagaag gccgggatct tcaagcattg ccaggaacaa
     2461 atgttccacc gatacatatt catcccctaa ttgcttggcc tctttttccg cgttaggcaa
     2521 aaggttattc atccgggcag agaaatagac ctcctgggtt ttggcgtaga ttttggaacg
     2581 ccctttgaga tcgctttcta tctcccgggt taaagaagcg gtattaagac ctgaacctgc
     2641 cagcaactcg gcaataatgc tctcttcctg cttcagtaaa gccagcaaga gatgctcatt
     2701 atccgcctgc tggtggttta ggcctttagc taagctgact gcttcctgaa tggcctcctg
     2761 ggccttgata gtaaatttct ctaagcgcat ttttttattt tagcactctt ttgccaagag
     2821 tgctaataaa attttaaatt tctttctttg agaattcgga taatttctta gtcatagcca
     2881 caggcaaaaa agcattgata attacggatt tactggtata gcgcgctttc tccaccttcc
     2941 cttctttata tatcatatcc actaagccca ttttgtccaa aggaatagtt aattccaccc
     3001 gttccattgt ttgggaaacc ttttgggata ttgtattcaa aagctgttcc aagctttctt
     3061 tcttcagcgc ggatataact aaggattcag gaaaatcctg tttgtagcgt tctatccagt
     3121 tttggtcttc tatcttgtca atcttattta aggcaatgat gatattttta ccctgacact
     3181 ccaattccgc gagcacctgg ttcacggatt cataatagct gtaacgcaat ggatgcgaaa
     3241 catccaagac atggattagc aggtctgcct cgcgcacatc ctctaaggtg gccttaaagg
     3301 cctcaatgag atggtggggc aggttgtgca ggaaacctac tgtatccgag aggataattt
     3361 tctggcggtt gggcaggata aggatgcggg aaagcgggtc caaggtggta aacaggctgt
     3421 catcggctaa ttgatgttca ttgactaagg aattaagtaa tgtggtcttt ccggcattag
     3481 tatagccgac cagggatacc ag
//
LOCUS       DATDUB010000129         3058 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_252753, whole genome shotgun sequence.
ACCESSION   DATDUB010000129 DATDUB010000000
VERSION     DATDUB010000129.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3058)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3058)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3058
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_252753"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1136)
                     /locus_tag="VJA84_02575"
     CDS             complement(<1..1136)
                     /locus_tag="VJA84_02575"
                     /inference="COORDINATES: protein motif:HMM:TIGR03026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003979 - UDP-glucose 6-dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0000271 - polysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide sugar dehydrogenase"
                     /protein_id="HLD41042.1"
                     /translation="MREQLEQKIKDKSAQVSVIGLGYVGLPLAVELSKAGFSVTGIDT
                     DIDRVHNVKNAIPYILDVDINDIKKLVEKKSLTATGDFRKLANSDVIIICVPTPLKRK
                     YQPNIAYIRQAVKQIKKHLRAGQLVILESTTYPGTTDEVILPMLESTGLKCGKDFFLV
                     FSPERIDPGNEKFPLNKIPKVVGGVTPEAAHLFKLLYENIIERVVQVSSPRAAETVKL
                     LENTFRLINIGLVNELAMLCHKMDMDVWEIIDAAKTKPFGFMPFYPGPGVGGHCIPKD
                     PLYLYWKAKLHGFKSRFIKLAADLNSAMPAYVVERLSAIKPLKEAKILVLGVTYKKDV
                     KDLRKSPALEIIDLLKKHKAEVSYADPLIPYLKFDHFNLKSATV"
     gene            complement(1121..2005)
                     /gene="rfbD"
                     /locus_tag="VJA84_02580"
     CDS             complement(1121..2005)
                     /gene="rfbD"
                     /locus_tag="VJA84_02580"
                     /EC_number="1.1.1.133"
                     /inference="COORDINATES: protein motif:HMM:TIGR01214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008831 - dTDP-4-dehydrorhamnose reductase
                     activity [Evidence IEA];
                     GO_process: GO:0009243 - O antigen biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019305 - dTDP-rhamnose biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose reductase"
                     /protein_id="HLD41043.1"
                     /translation="MEKAKKTILITGPGGMLGADLVKHLKKGYKVVPLTHQDCDIRDS
                     KKVLSLFKRYRPWIAIHSASWTDVDGCEKDAKLAYSVNAQGTAVMAKAAKLTGSILIY
                     ISSDYVFSGRQKAPYSEKDRAYPVNVYGRSKLEGEKSVRKLLKKHIIIRTSWLFGRGR
                     RNFIDNVLSWAKEKKEMRIISDKYACPTYTLDLAKAIGRLIRFIQKNPKTKKLYGTYN
                     LVNSGYCSWLEYARFILKTAGLNAAKMTPIAMAQAGFRASRPAFSALDNSKLSRLTGH
                     SMRPWKKAVEEYIKCASN"
     gene            complement(1975..2940)
                     /gene="rfbB"
                     /locus_tag="VJA84_02585"
     CDS             complement(1975..2940)
                     /gene="rfbB"
                     /locus_tag="VJA84_02585"
                     /EC_number="4.2.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012619003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008460 - dTDP-glucose 4,6-dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009243 - O antigen biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019305 - dTDP-rhamnose biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-glucose 4,6-dehydratase"
                     /protein_id="HLD41044.1"
                     /translation="MKLLVTGGCGFIGSNFIRHILKKYPSYKVVNWDKLTYAGNPDNL
                     RDVQANKNYTFVKGDISDRRLAERLLPQCDCIVNFAAATHVDRSIQDAGDFIKSNIQG
                     AYTLLEAARGSKIKRFLQISTDEVYGSVEKGRSKENDSLFPNSPYSASKAAADHLVRA
                     YGVTYKLPVIITRSSNNFGPYQYPEKVIPLFITNLLEGKKAPLYGDGLNKRDWLFVQD
                     NCRAIDTVLHKGKTGEIYNIGAGREIPNIILTKDILKLTGMPQSSIQYVADRPGHDRR
                     YALNVNKLKSLGWSQEYRFTDALRLTIEWYKNNHNWWKKLKKPSS"
BASE COUNT          701 a          730 c          729 g          898 t
ORIGIN      
        1 tcaacagtcg ccgactttag attaaaatgg tcaaatttta ggtaggggat caatgggtca
       61 gcgtaagata cctcggcctt atgtttctta agcaggtcaa ttatttccaa agccggggac
      121 ttccttaaat ccttaacatc ctttttatag gttaccccta aaaccaggat tttggcctct
      181 tttaagggtt taatggccga gagcctttcc accacatagg ccggcattgc cgaattcagg
      241 tccgcggcca gcttgataaa acgcgattta aatccgtgga gtttggcctt ccaatataaa
      301 tacaaggggt ccttgggtat gcagtggccg cctaccccgg ggccggggta aaagggcata
      361 aagccaaagg gcttggtctt ggccgcgtca atgatctccc agacatccat atccatttta
      421 tggcagagca tagccagttc attaactaag ccgatattga tcaggcggaa ggtgttctcc
      481 aagagtttca cggtctccgc ggccctcggg ctggaaacct ggactacccg ctcaatgata
      541 ttctcataga gcagtttaaa aagatgggcc gcttccgggg taactcctcc tacgaccttg
      601 ggaattttgt tcaggggaaa tttttcgttt ccggggtcaa tcctttccgg ggaaaagacc
      661 aggaagaagt cttttccgca tttaagcccg gttgactcta acatcggcag gattacctcg
      721 tcggtagtgc cggggtaggt ggtgctttcc aggatgacta attggcctgc gcgcagatgt
      781 ttcttgattt gtttgactgc ctgtctgatg taggctatgt tcggctggta tttgcgcttt
      841 aagggcgtgg gcacgcagat aataatcaca tccgaattgg ccaatttcct gaagtcgccc
      901 gtcgcggtca ggcttttctt ttccaccagt ttttttatat cattgatgtc cacatccagg
      961 atgtaaggga tggcgttttt gacattgtgg acccggtcaa tgtcggtgtc aatcccggtg
     1021 actgaaaaac cggccttgct taattccacc gctaaaggca ggcccacata tcctaatccg
     1081 attacggaaa cctgcgcgct tttatctttt atcttttgtt ctaattgctc gcgcatttaa
     1141 tatactcctc taccgctttt ttccagggcc gcatactatg gccggttaaa cggctaagct
     1201 tggaattatc cagggccgag aatgccgggc gactggccct aaaaccggct tgggccattg
     1261 caatcggggt catcttggcc gcgtttaaac ccgctgtctt aagaatgaac ctggcgtatt
     1321 ccagccaaga gcaatatccg gaattaacca agttatatgt gccgtacaat tttttggttt
     1381 tagggttttt ctgaataaac cggattaatc ttccgatggc cttggccaga tccagggtgt
     1441 aagtcgggca ggcatattta tcgctgataa tccgcatttc tttcttttct ttggcccagg
     1501 acaagacatt atcaatgaaa tttcttctcc cccggccaaa gagccaggat gtcctgatga
     1561 tgatgtgctt tttgagaagt ttcctgactg atttctctcc ttcaagcttg ctcctgccgt
     1621 agacattcac aggataagcc cggtcctttt cgctgtaagg agctttttgt cttccgctaa
     1681 agacataatc cgagctgata tatataagaa tggagccggt taatttagcc gctttggcca
     1741 ttacggctgt cccctgggca ttgaccgaat aggccagttt agcatccttt tcacagccgt
     1801 ccacatctgt ccaactggcg ctgtgtatgg ctatccaggg ccggtacctt ttaaatagcg
     1861 agaggacctt cttgctgtct cttatgtcgc agtcttgatg ggtaagcggg acgaccttat
     1921 atcccttctt gaggtgttta actaaatccg cccccagcat acctcccgga ccggttatga
     1981 ggatggtttt tttagctttt tccaccagtt gtgattattc ttataccatt caatagtcag
     2041 cctcaaggca tcggtaaatc tgtactcctg gctccagcct aaggatttta atttattcac
     2101 attcagggcg tatctgcggt catgccctgg ccggtccgcc acatactgta tactgctttg
     2161 cggcataccg gtaagcttaa ggatatcttt agttaagata atattcggga tttccctgcc
     2221 ggcgcctata ttatagattt caccggtctt gcctttatgc aggaccgtat ctattgcccg
     2281 gcagttatcc tggacaaaaa gccagtccct tttatttaat ccgtcgccgt aaagaggcgc
     2341 ttttttgccc tctaaaaggt tagtgataaa caaaggtatc accttttccg gatactgata
     2401 ggggccgaag ttgtttgaag agcgggtaat aattaccggc aatttatagg ttaccccgta
     2461 agcccttacc aggtggtcgg cggcggcctt gcttgccgaa tacgggctgt taggaaaaag
     2521 cgaatcgttt tctttggagc ggcctttttc cacgctcccg taaacctcat ccgtggaaat
     2581 ctgcaggaag cgttttattt tagacccgcg cgcggcctcc agcaaagtat aggcgccctg
     2641 gatattgctt ttaataaaat caccggcatc ctggatagag cggtcaacat gggtggccgc
     2701 ggcaaagttt actatgcagt cgcactgggg gagcagtctt tctgccagcc ttcggtcaga
     2761 gatatcccct ttaacaaagg tatagttttt gttggcctgg acatcacgga ggttgtcggg
     2821 attgccggca taggtaagct tatcccagtt gactacttta tacgaaggat atttctttaa
     2881 tatgtgccgg ataaaattag aacctatgaa tccacatccg ccggtaacta atagtttcat
     2941 aaattttaaa aattcttaat tcttagttct gtttttccgc gctaaggttg cggcgcgata
     3001 gagggtttcc ggcaggccgc agtcggtcca ccagccgttt aaggtatcgt aatagagt
//
LOCUS       DATDUB010000130         4689 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_920749, whole genome shotgun sequence.
ACCESSION   DATDUB010000130 DATDUB010000000
VERSION     DATDUB010000130.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 4689)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4689)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4689
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_920749"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1051)
                     /locus_tag="VJA84_02590"
     CDS             complement(<1..1051)
                     /locus_tag="VJA84_02590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41045.1"
                     /translation="MRLFEPAVKLLNRFKYLQKFLLIGVIFVIPLAVVEYILIDELNS
                     RIEFSSRERLGVSYITPLKGLLQDVQDYGQYLWRYAALKDNSLWEEAELKSAKIKKDI
                     QAVDAQDARLSEALRVEGEWPALRRRLNAFLEIKPQAVAEISGFYGYHSLCKEIIRFI
                     VRVGDNSNLILDPDLDSYYLMDAFVNNLASISESLDELGILGAKTIIENKANLEFDRV
                     AFSEHYGAAENSHKSMENGFRTAFDNNLSLIPAIEPVLKKYSSDFSAFLTLVNFSLLG
                     ASGNVPDLAGFYSSHSQAESGIYGLYEIVGPHLDRLLEARINKFKNKKLFVQVLALIM
                     LAIVVYIIIAFYLSVK"
     gene            complement(1048..1440)
                     /locus_tag="VJA84_02595"
     CDS             complement(1048..1440)
                     /locus_tag="VJA84_02595"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HLD41046.1"
                     /translation="MPPKKIIIVDDDKTVLESLEKLLVLSGFEALSTQDSREAVSKIK
                     AFKPNIILLDLLMPHLGGLEICEILNSDKETQGIPILVLSALDKEADIKKAYYLGVVD
                     YITKPYDFQDLLRKINKAVFYKDERPGL"
     gene            complement(1477..2724)
                     /locus_tag="VJA84_02600"
     CDS             complement(1477..2724)
                     /locus_tag="VJA84_02600"
                     /inference="COORDINATES: protein motif:HMM:NF012694.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HLD41047.1"
                     /translation="MPTYHYKAKKGTEAVEGRIEADSEKAAVEKLSLSGHLPLRVELE
                     DGSQETAGNGLKPFPANPAKIPVKSKGRVQSKEITLFSRQLASLLKSGMPILKALDII
                     LEQSENPYLKYVLGNIHREIKEGSTFSSAFQDYPKIFPAIYIAIIRSGEDSGSLPDAL
                     LRISDYRAKQEEIVSRVRMALAYPVLMAAVGAGTIIFMLTFVMPRLLRLFSNMGQRLP
                     LPTRLLMALSSGLRQWWWLIILVLVGVVLFVRSRLKTEQGRMFWSALELKLPLFGRFI
                     LKAELSRFSRTLELLIKNGITILRAIDVAIPVLNNEIIKKQLKESYKDLEQGGSFGRS
                     LKKSRLFPPFMSNLIIVGEESGGLSGALSEIASSYERDTDEMIKTMANLLEPLLILGM
                     GLVVGFIVTAMLLPIFEINIMTN"
     gene            complement(2835..>4689)
                     /locus_tag="VJA84_02605"
     CDS             complement(2835..>4689)
                     /locus_tag="VJA84_02605"
                     /inference="COORDINATES: protein motif:HMM:NF012652.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATPase, T2SS/T4P/T4SS family"
                     /protein_id="HLD41048.1"
                     /translation="AAVAYPLDVKIQDEIRTQLGYDLTMVLSSSGDIQEALKKRYGLG
                     ADTLEKIGSSDSKARERIQAVSIEAVEDIEKQASDASVINLVNQIILEGWKKRATDIH
                     IEPFRGGVNFRYRIDGLLYDASMPAQIKGFLSAIISRIKIMSNLNIVERRLPQDGRSV
                     VKVQEQVLDLRISTIPTPFGESIVIRILPASMLYSLEKLGLPKKYMQTFEILIQKPHG
                     IIFVTGPTGSGKTTTLYSCLSRINTRERKIITIEDPIEYEMSGITQIQVAPEIGLDFA
                     RGLRSILRHDPDVIMVGEVRDLETAEIAIRVALTGHLVFSTLHTNDAVSGITRLTDIG
                     VEPYLISSSVEAFIAQRLIRVICSDCRYEDKSAPLELRNQISRDLGLRSQDISIYRGK
                     GCNNCNFTGFFGRTAIYEVLLADDTIKDLILKKAPANHLKRIAVSKGMQTLRQDGWQK
                     VVSGITTPEEVMKATPVSEITSFASSGSGELPIGAAVLEPGADNIAVSDKRIFTRLDN
                     KVNLIYKVLEVKDGLVKRGFTPEQFSVTRNISAGGLVFISDEPLAIGAVLELKIELPN
                     EAPIDCLARVVRVEERQASLSSKPSYDTAICFLDIAGSQRSQLNKYIETIK"
BASE COUNT         1179 a         1259 c         1092 g         1159 t
ORIGIN      
        1 tttttaccga tagataaaag gcaataataa tgtagaccac tattgccagc ataatcaggg
       61 ccaggacctg cacaaagagt ttcttattct taaacttatt tatccgcgcc tcaagcaggc
      121 ggtccagatg aggcccgaca atctcataca agccatagat gccgctttcg gcctgggaat
      181 gcgaagagta gaacccagcc aggtccggga cattcccgga ggcccctaaa aggctgaagt
      241 taaccaaagt caggaaggcg ctgaaatcgc ttgagtattt cttgaggacc ggctctatcg
      301 ccggaatcaa cgagaggtta ttgtcaaagg ccgtcctaaa accgttctcc attgacttat
      361 ggctgttctc cgccgccccg taatgctcgg aaaaggccac ccggtcaaat tccagattgg
      421 ccttattttc aataatcgtc ttggcgccca atatccctaa ttcatccagg ctctcggata
      481 tggaggcgag attattcaca aaggcgtcca tcagataata gctgtctaag tccgggtcaa
      541 ggatgagatt ggaattgtcc ccgaccctga cgataaaacg gattatctcc ttgcataaag
      601 aatgatagcc gtaaaaaccg gatatctcgg ctaccgcctg gggcttgatc tcaaggaagg
      661 cgttcaatct gcgcctaagg gccggccatt cgccttccac ccttaaggcc tcggacagcc
      721 gcgcgtcctg ggcgtccaca gcctggatat cctttttgat tttggcggac ttaagctccg
      781 cctcttccca taaagaattg tcctttagcg ccgcgtaacg ccataaatac tgcccgtaat
      841 cctggacatc ctgaagcagg cccttaagcg gcgtaatata gctgaccccc aatcgttccc
      901 tggatgaaaa ctctatccgg gaattaagct catctatcag gatatactcc accaccgcca
      961 aagggatgac aaagattacc ccgattaaga ggaatttctg caggtattta aaacggttca
     1021 gcaatttaac cgccggttca aacaatctca taagccgggc ctttcgtcct tgtagaaaac
     1081 agccttgttt atcttgcgca gtaaatcctg aaaatcgtag ggcttggtaa tatagtcaac
     1141 cacacccaga tagtacgcct tcttgatatc cgcctcttta tccaaagccg agagaacaag
     1201 gataggaatt ccctgggtct ccttatcgga gtttaagatc tcgcagatct ccaatccccc
     1261 cagatgcggc atcaacaggt ctaagaggat aatattcggc ttaaaggcct tgattttaga
     1321 aacggcctct ctggagtcct gggttgagag cgcctcaaag cccgataaaa ccaaaagctt
     1381 ctccaggctc tccagcactg tcttatcgtc atctactatg attatctttt ttgggggcat
     1441 tttaaaaaat tagattttgc gttgtcattt tgatttttaa tttgtcatta tatttatctc
     1501 aaaaatcggc aaaagcatcg ccgtcacgat aaaccccacc accagcccca ttcccaggat
     1561 caagagcggc tcaagcagat tagccatagt cttgatcatt tcatcggtgt cccgctcgta
     1621 agaagaggca atctcggata acgcccccga aagacctccg gactcttctc ccacaattat
     1681 caggttgctc ataaaagggg gaaaaagccg ggatttcttc aggctacggc caaaagagcc
     1741 tccctgctcc aggtctttat agctttcctt aagctgtttt tttataatct cattattcaa
     1801 taccggaatg gcaacatcaa tcgcccgcag tatggttatc ccgtttttga tcaatagctc
     1861 taatgtccgg ctgaagcggg acaattccgc cttaaggata aacctgccga acaagggaag
     1921 cttaagctct aacgcgctcc aaaacatcct cccctgttca gtcttaagcc ggctacggac
     1981 aaacaaaacc acgccaacca aaaccaggat aatcagccac caccactggc gcaggccgga
     2041 gcttagggcc ataagtaggc gggtaggtaa aggcagtctc tggcccatat tgctaaacag
     2101 gcgtaagagc cggggcataa caaaggtaag cataaagata atcgttcccg cccccactgc
     2161 cgccatcagc acaggatagg ccagggccat cctgaccctg gaaacaatct cctcctgctt
     2221 ggcgcggtaa tcagagatgc gcaggagggc gtcgggtaaa gagccgctgt cttctccgct
     2281 gcggataatc gcgatatata tggccgggaa aatcttggga taatcctgaa aggccgaaga
     2341 aaaggtggag ccttccttaa tttccctatg gatattgcct aagacatatt tcagataagg
     2401 gttctcggac tgctctaaga ttatatccag ggccttgagg ataggcatcc cggacttcaa
     2461 aaggctggcc aactgccggc taaagagggt aatctctttt gattggaccc tgcccttgga
     2521 cttaaccggg attttagctg gattcgcggg gaacggtttc aagccgttcc ctgctgtttc
     2581 ttgagaacca tcctccagtt ctacccgcag aggcagatgt ccggagaggc ttaatttttc
     2641 cactgccgcc ttctccgagt ccgcctcaat ccggccttct accgcctctg tccctttctt
     2701 ggctttgtaa tgatatgtgg gcatagttat ttgtgaaata aacaatggtc gatagtcgat
     2761 ggtctatggt ctattggttt atttttttga ctatcgacta tcgactatag actatagacc
     2821 cttcaattat caggctattt aattgtttct atatacttgt ttaactggct gcgctgtgaa
     2881 ccggcaatat ccaagaaaca aatcgcagta tcgtaagacg gcttagaaga aaggctggcc
     2941 tgcctttctt caaccctgac caccctggcc agacaatcaa tcggcgcttc attaggcagt
     3001 tctatcttta gctccaggac cgctccaatg gccagcggct catccgagat aaaaaccagg
     3061 cccccggctg aaatattacg ggtaacgctg aattgctccg gggtaaagcc gcgtttaact
     3121 aagccgtcct tgacctctaa aaccttataa atcagattga ccttattgtc taaacgggta
     3181 aatatccttt tatcggagac ggcaatatta tccgcccccg gctctaaaac agccgcgcct
     3241 atcggcagtt ccccagagcc ggaagaggca aaagaggtga tttccgaaac cggggtggcc
     3301 ttcatcacct cttccggggt ggttatcccg ctaaccacct tttgccagcc gtcctggcgc
     3361 aaggtctgca tacccttgct tacggctatc ctcttgagat gattagccgg ggcctttttc
     3421 aggattaaat ccttaatagt atcatcggcc aacagcactt cataaatagc ggtccggccg
     3481 aagaaaccgg tgaaattgca gttattacat cccttgcccc gatagatgct gatatcctgg
     3541 ctacgtaacc ccaggtcccg ggaaatctgg ttccttaatt ccagcggcgc ggatttatct
     3601 tcataccggc agtccgaaca gatgacccgg ataagccgct gggcaataaa ggcctcaacg
     3661 ctggatgaaa taagataggg ctccaccccg atatccgtaa gccgggtgat cccgcttacc
     3721 gcgtcattgg tatgcagggt ggaaaagacc aagtgcccgg taagggccac ccggatggca
     3781 atctcggcgg tttccaaatc cctgacttcc cccaccatta tcacatccgg gtcatgcctt
     3841 aagatactgc gcaggccgcg ggcaaagtcc aggccgatct ccggggccac ctggatctgg
     3901 gttatcccgg acatctcgta ttcaatgggg tcctcaatgg tgataatctt gcgctcccgg
     3961 gtgttgatcc ggcttaaaca ggaatacagg gtggtagtct tgccgcttcc ggtaggcccg
     4021 gtgacaaaga ttatcccgtg cggcttctgg atcagaatct caaaggtctg catatatttc
     4081 ttaggcaggc ccagcttttc caggctataa agcatgctcg ccggaagtat cctgatcaca
     4141 atgctttccc cgaaaggggt agggatagtg gaaatcctca agtccaggac ctgctcctgg
     4201 accttgacca cgctgcggcc atcctggggc aggcggcgct ccacgatgtt aagattagac
     4261 ataatcttga tccgggagat gatcgcgctt aagaaaccct tgatctgggc gggcatgctg
     4321 gcgtcataca gcaggccgtc aatgcggtag cggaaattca ccccgccccg gaatggctca
     4381 atatgaatgt ccgtggccct tttcttccaa ccctctaaga ttatctgatt gactaagttg
     4441 attaccgagg cgtcagaggc ctgtttttca atatcctcaa ccgcctcaat ggacaccgcc
     4501 tgaatccgct ccctggcctt gctgtcggat gaacctatct tttccagggt gtccgcgccc
     4561 aggccgtagc gcttttttaa ggcctcctgg atatcgccgg aagaagaaag aaccatggta
     4621 aggtcatatc ccaattgggt gcggatctca tcctggatct tgacatctaa cgggtaagcc
     4681 accgccgcg
//
LOCUS       DATDUB010000131         4158 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_2421230, whole genome shotgun sequence.
ACCESSION   DATDUB010000131 DATDUB010000000
VERSION     DATDUB010000131.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 4158)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4158)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4158
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2421230"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1821)
                     /locus_tag="VJA84_02610"
     CDS             complement(<1..1821)
                     /locus_tag="VJA84_02610"
                     /inference="COORDINATES: protein motif:HMM:NF024754.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HLD41049.1"
                     /translation="MPKIDYQKELNPSQLEAVMSTEGPHLIIAGAGSGKTRVLTYRVA
                     YLVERGLRPEQILLLTFTRKAAEEMLRRASLILDERCARVSGGTFHSFANMTLRRYCH
                     VLGFSSNFTILDTSDAEDVINLLRAKLGYHKVDKRFPKKNSILDVISKSINKSRRVEE
                     VLVDEYPQFEDWVQDIKRLKEEYAAYKYANSLLDYDDLLVFLKKLLSEFDDIRARLAD
                     NYSYVMVDEYQDTNKLQAEIAYLLSGKRRNIMVVGDDSQSIYSFRGANFRNIIDFPKV
                     FADAKVITLEENYRSSQPILNLTNEIIRQAREKFEKKLFSRRQGQEHPLYVETADEHE
                     QSEFVADRILELREEGISLREMAVLFRSGWHSNDLEIELSKRNIPFRKYGGQKFVEAS
                     HIKDILSYLKVTYNISDQVSWHRLLLLLPKIGPKTAEKIIEEVTTLKRGLALDLQAAA
                     FQKNGQLRELFQLLSKALSCGLSVGEMFHLFLGHYQPLLREKHDDFHKRGNDLDSLAR
                     IALRYKSLEQFLSDMALEPPEKSLARRGPEDKEEDFVTLSTIHSAKGLEWQSVFIIHL
                     AEGHLPSYLSLEDEDQIEEERRLFYVASTRAKDKLFLIKPR"
     gene            complement(1887..3092)
                     /locus_tag="VJA84_02615"
     CDS             complement(1887..3092)
                     /locus_tag="VJA84_02615"
                     /inference="COORDINATES: protein motif:HMM:NF012694.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HLD41050.1"
                     /translation="MPNYKYTAKNRNSETLSGVLEANSQKEAEELLHKKGLIIISLKQ
                     ASGRAAKEKLSNRIPLDELVIFSRQLATMIDSGITLVAALEILKEQVDNKNLSRIISY
                     IYMDVEGGKSFCDAVAKYPQAFSDFYINMIKAGEASGMLDEVLERLALYLEKTASLRR
                     KVVSSLTYPAVIITMAGLITMVLMIKVVPTFKNIFESLGGKLPAPTLILILVSDIMRK
                     YFLIMIAAAVIAVVLLKRYIDTPKGRYKFDKLILKIPVFGDLLMKVAVARFSRTFATL
                     IKSGIPILNAMEIVGKTAGNKVVEESVKSAREAVRQGESIRQPLERAKVFPPMVVRMI
                     GVGEQAGELEKMLSKIADFYEDQVDAAVSGMTSIIEPLVIAFLGIVIGGIVFALFMPI
                     FKISELVSK"
     gene            complement(3099..>4158)
                     /locus_tag="VJA84_02620"
     CDS             complement(3099..>4158)
                     /locus_tag="VJA84_02620"
                     /inference="COORDINATES: protein motif:HMM:NF012652.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="GspE/PulE family protein"
                     /protein_id="HLD41051.1"
                     /translation="LRVRFRIDGDLADVFNIPKKNQNAILARIKIIAGLDTTEIRMPQ
                     DGRFKARFSGKEVDFRVSSLPTIFGQKLVLRILDRGSLSLGLAALGFSGSSMPILKEA
                     MARPYGMILVTGPTGSGKSTTLYSILTQLNTPERNIITVEDPVEYQIEGITQVNVRGD
                     IGLSFASGLRAILRQSPDVILIGEIRDAETADIAVKAALTGHLVMSTLHTNNASQAVT
                     RLLDMGLEPFLVASSLIMSSAQRLIRLICERCREPDQPVPQLLKRMGLTGETKFFRGK
                     GCRFCNNTGFYGRSALLEIMMIDDMIREMIVKGSSSEQIEDYAVSNLGMKTLRQDALE
                     KAKNGLTTLEEVLRITAE"
BASE COUNT         1021 a         1140 c          950 g         1047 t
ORIGIN      
        1 tctgggcttg attagaaaga gcttgtcctt ggcccgggtg ctggccacat aaaaaagcct
       61 gcgctcctcc tctatctggt cttcatcctc taaagaaaga taagacggca gatggccttc
      121 ggcaaggtga atgataaata cgctctgcca ctccaggcct ttggcggagt gtatggttga
      181 gagagtgaca aaatcctcct ctttatcctc cgggccgcgc cgggcgaggc tcttttcagg
      241 cggctccagg gccatatccg ataaaaactg ttccagggat ttataacgca gggcgatcct
      301 ggccagagaa tccaggtcat tgccgcgctt atggaaatcg tcgtgtttct ctctcaataa
      361 aggctgatag tgccccagga agagatgaaa catctccccc acactcaagc cgcaagacag
      421 cgccttactt aaaagctgaa aaagctcacg caactgtccg ttcttctgga atgccgcggc
      481 ctgcaaatcc agggccaggc cccgcttaag ggttgtcact tcttcaatta tcttttccgc
      541 ggtttttggc ccaatcttag gcagaagcag taaaagccta tgccagctga cctggtccga
      601 aatattatag gttactttca gataagacag gatatcctta atgtgcgagg cctccacaaa
      661 tttctggccc ccgtatttgc gaaagggaat attacgctta gagagctcta tctccaggtc
      721 gttagaatgc catccggagc gaaagagcac ggccatctcc cgcaaagaaa ttccttcttc
      781 cctaagttcc aggattctat ccgccacaaa ctcggattgt tcgtgttcat ccgcggtctc
      841 cacatacaga ggatgctctt ggccctgcct gcggctaaaa agcttcttct cgaatttttc
      901 cctggcctga cggattatct cattggtcag gttcaggata ggctggctgg agcggtaatt
      961 ttcctctaaa gtaatcacct tggcatccgc gaagactttg gggaaatcaa tgatattgcg
     1021 gaaattcgcc ccccggaagg aatagatgct ctgggaatca tcgcccacca ccataatatt
     1081 gcggcgcttg ccgcttaaaa gataggctat ctcggcctgc aatttattgg tatcctgata
     1141 ttcatccacc ataacatagc tgtaattatc ggcaagcctg gcgcggatat cgtcgaactc
     1201 ggataaaagc ttctttaaaa aaaccagcag gtcgtcataa tccaagaggg aattggcgta
     1261 tttgtaagcg gcgtattcct ctttcagccg ttttatgtcc tgcacccagt cctcaaactg
     1321 gggatactcg tccaccagga cctcttctac gcgccgggat ttattgatgc tcttagaaat
     1381 cacatccagg atgctattct tcttcgggaa acgcttgtcc accttatgat accctaactt
     1441 ggcgcgcagg agatttatca catcctcggc gtcagaggta tccaggatgg taaaattact
     1501 tgaaaaaccc aagacatggc aatagcgcct tagggtcata ttggcaaagg aatggaatgt
     1561 ccccccggaa acccgggcac agcgctcatc caggatcagg gatgcccggc gcagcatctc
     1621 ctcggcggcc ttgcgggtaa aggtcaaaag gagtatctgc tccggcctaa gtcccctctc
     1681 caccagatac gccacccggt aggtaagcac ccgggtcttt ccgctcccgg ccccggcaat
     1741 aatcaggtgc gggccttcgg tagacataac cgcctctaat tgcgaagggt taagttcttt
     1801 ttgataatct attttaggca tattataaat atagttcctc ccccctatcc cctgccacca
     1861 ggggagggga atttagtttt ttgttattat ttagatacta gctcactgat tttaaatata
     1921 ggcataaaca gggcaaagac gatcccgccg atgactatgc ccaggaaggc gatgactaaa
     1981 ggctcaatta tgctggtcat gccgctgacc gcggcatcca cctggtcttc gtagaaatcc
     2041 gctatcttgc tcaacatctt ttccaattcc ccggcctgct cccccacccc gatcatcctc
     2101 actaccatag gaggaaagac cttggccctt tccaggggct gtcttattga ctctccctgc
     2161 ctgactgctt cccgggcgct tttgaccgac tcctcaacca ccttatttcc cgcggtcttg
     2221 cccacaatct ccatggcgtt aagtatgggg atgccgctct taattaaagt ggcgaatgtc
     2281 cgggagaacc tggccaccgc caccttcatc agcaaatctc cgaaaacagg gatctttaag
     2341 atcaacttat caaacttata cctgccttta ggggtatcaa tatagcgctt aagcaagact
     2401 accgctatca ctgctgccgc gatcattatc aaaaaatatt tcctcattat gtcgctgacc
     2461 aggataagga taagcgtagg cgcggggagt ttgcccccca ggctttcaaa tatattctta
     2521 aaggtaggca caaccttgat cattaaaacc atagttatca agccggccat agtaatgatt
     2581 accgccggat aagtcaggct ggagacgacc ttgcggcgca aggaggccgt cttttccaaa
     2641 tacagcgcca gcctctctaa cacctcatcc agcataccgg aggcctcgcc ggccttaatc
     2701 atattgatat agaaatcgga gaaggcctgg ggatatttgg ccacggcatc gcaaaaactc
     2761 ttacccccct ccacatccat atagatgtaa gagattatcc tggagaggtt tttattatcc
     2821 acctgctcct ttaatatttc caaagccgcg accagggtta tgccgctgtc aatcatcgtg
     2881 gccagctgcc gcgagaatat caccaattca tcaaggggga tccggttgga taatttctct
     2941 ttggccgccc ggcctgaagc ctgctttaaa gaaataataa tcagcccctt cttatgcaga
     3001 agctcttcgg cctctttctg gctgttggcc tccaatacac cgcttaaggt ttcggaattc
     3061 ctattcttgg ctgtatattt ataattcggc atttttcatc attccgcggt tatccttagg
     3121 acttcttcca gggtggttaa cccgtttttg gccttttcca gggcatcctg gcgcagggtc
     3181 ttcatcccca ggttacttac cgcgtaatcc tcaatctgct cgctggatga tcctttaaca
     3241 atcatctccc gtatcatatc atcaatcatc ataatctcta ataaggccga acggccgtaa
     3301 aaaccggtgt tattgcagaa acggcagcct ttgccgcgga aaaatttagt ctcgccggtc
     3361 aatcccatcc tttttaacag ctggggaaca ggctgatccg gctcccggca gcgctcacag
     3421 ataagccgga tcaggcgctg ggctgaactc ataatcaggc tggaagccac caaaaacggc
     3481 tccaggccca tatccaaaag ccgggtcact gcttgagagg cattgttagt atgcagggta
     3541 gacatcacta aatgcccggt aagggcggcc ttgaccgcga tatccgcggt ctcggcgtcc
     3601 cggatttctc caatcaatat tacatccggg ctctgcctta agatggcccg caggcctgaa
     3661 gcaaaactca aaccaatatc gccgcggaca ttgacttggg taatcccttc aatctggtat
     3721 tccaccgggt cctcaacagt gatgatattt ctctccgggg tatttaactg ggtaaggatt
     3781 gaataaaggg tggtagactt tccgcttccg gtgggcccgg tgaccaaaat catcccgtaa
     3841 ggcctggcca tagcctcttt caggatcggc atagaactgc cggaaaatcc cagggccgca
     3901 aggcccaagg aaaggctccc ccgatccagg atgcgcagga ctaatttctg gccaaagata
     3961 gtcggcaaag aagaaacccg gaaatccacc tccttgcctg aaaacctggc cttaaatctg
     4021 ccgtcttgag gcatacggat ttccgtggta tccagcccgg cgataatctt aatcctggcc
     4081 aggatggcat tttggttctt tttcgggata ttaaaaacat ccgccaaatc cccgtcaatc
     4141 ctgaagcgca cccgcagg
//
LOCUS       DATDUB010000132         7150 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1437130, whole genome shotgun sequence.
ACCESSION   DATDUB010000132 DATDUB010000000
VERSION     DATDUB010000132.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 7150)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7150)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7150
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1437130"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1709
                     /locus_tag="VJA84_02625"
     CDS             <1..1709
                     /locus_tag="VJA84_02625"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HLD41052.1"
                     /translation="FGIMAVGAVAVPIDPKLTPGEIINLLRDSQAKILFSSPELFPSL
                     KDLLKDIQGLKKTLLYPFPEITASKPAREINTADKSEWTASLLYTSGTTASPKGVMLT
                     QKNFCSNFESISKLNIVTAKDNIVSLLPLHHSYPFMVCLILPLLTGAKITFLNSLKSE
                     DLLKCLRETKGAILVGVPQLYHLLHKSILEKIGKPETLLSLLKIVNWTRRAFGLNLNK
                     IILKKLHQRFGPSLRFFFSGGARLEPKAARELSLLGFNLLEGYGLTETSPVVTFTPPG
                     SAKFGSAGLPIPGVKIKILNPNAEGIGEVLIKGPNVMQGYYNKPQESQEALKDGWFYS
                     GDLGYIDKDGYLFLTGRSKEVIVLASGKNIYPEEIEAYYLKDPYIKEICVLETSAGGS
                     SSLYAVVLPDIEYFRKAKEVNIQGKIRWSLEDLSKGLPSYKRIMGWTLARDEFPRTRL
                     GKLKRYEIKAKYLAPLPKESPETVKTKEEALPPADKLERQIIEFLGRELKRKVSPSDH
                     LELDLGIDSLTRVELAIGLEKIFNLNLADTDMADVFSVKELIEKIRCLLEQRQKIGDA
                     DK"
     gene            1696..3201
                     /locus_tag="VJA84_02630"
     CDS             1696..3201
                     /locus_tag="VJA84_02630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004073297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HLD41053.1"
                     /translation="MPTNNPPETSDIFCDDLPSAPLSEAGKILVSGASGYIGGRLVPE
                     LLHRGYKVRALVRGDPLTYKNIWPEAEIVRADVLNKEEIRNALSGIDTAYYLIHSLHL
                     GLKEFEKTDILAARSFRDGAQEQGVKRIVYLGGLGDVRSKLSSHLRSRAEVAKELKKG
                     KVPVTVLRAAVIIGSGSASYEIIQHLAVKLPLIFIPYWAKNKCQPIGVRDVIKYLVGA
                     LETPETQGRSFDIGGKDVLTYEEMLKTFTHLLMKKTIFIDFPFIPLKVYAYFASLFTP
                     VPHTITRCLMEGLKNEVICYDNSIKGCLPFEPLSYREQVVRALSREEQDRVSTRWSDA
                     YHPYYDLALKLYEVKQPVTYSVRYSILTLNEADKLFRSFCRIGGRRGWFYYNWLWRLR
                     GAIDRILLGVGTIRGRKSYSHLKINDVVDFFRVEDIRENQLLLLRAEMKIPGRAWLEF
                     NIKEEAGKRRLSVIAYYNTQSLLGKFYWHACLPLHHFLFQKLLIGIEDKAK"
     gene            3387..4451
                     /locus_tag="VJA84_02635"
     CDS             3387..4451
                     /locus_tag="VJA84_02635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41054.1"
                     /translation="MKKIIALVMLSSLLTANLVSAATNAASYSQAQKAQTFISNQIKG
                     VGLVDSYQEDEKDVSYVYDNALAAMACMNMNNYGLAKRIFDALCKKVQKDGTYGIPYE
                     SYNFNTGKPISYNLYSGNAAWLLQALNIYQKKQSSKTYYTVQKKLAAFLVKFQDSSDG
                     AIKGSNNDSWKSAEHNIMAYVALRNFGRLNNLSSYVTKADKVKAFLTGSSIWDGERFN
                     QGKNDTHRVTDVQALGTLLLGSSYSSALTYAEKYLKLTDYYNSKSVIGFDFNSDLDTV
                     WLEGNLQMALAFYKSGNTTTGDYYYDEAAKTIQSDGSVILATSTGSASDWWTLQVWRA
                     IAPTSWLIMYYNKFSPLTLY"
     gene            complement(4448..7075)
                     /locus_tag="VJA84_02640"
     CDS             complement(4448..7075)
                     /locus_tag="VJA84_02640"
                     /inference="COORDINATES: protein motif:HMM:NF028476.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellobiose phosphorylase"
                     /protein_id="HLD41055.1"
                     /translation="MIYKFIDDKGAFRVINPQRYNLYFPLTNKDGSILSSISPNLAGD
                     IKKDNERFLTPPAGIEDLRSNFLTRRDFFIKTKTDTLRLSFPYNDTLEAGLLYHKITK
                     QTKSLEIEILNFVPFDASVELMRIKVRNKSAKDIKIIPTSFIPLYGRSEKCLRDHRHV
                     TALLNRVYLEKHGIYLKPTMVFDEKGHRANETIYFVLGFENEGLAPIGQFPSLDYFYG
                     RGDIIHPEAIEKTVQPAVLGSAEFDGKEACAAFRFREKVLKKNQEADYFLIMGIGDNS
                     KDIKDIFKRFNSPQKVENSLEQTKKYWQGYLSGLEFNFGNKDFNNWLLWVKLQPALRK
                     LFGCSFLPHFDYGKGGRGWRDLWQDALTLLLTQAGPEAKSFLINNFKGVRVDGSNATI
                     ITKDGEFLSDRNRISRVWMDHGIWPYLTLRLYLNKTGDLDILLQEDTYFQDHQFKRSR
                     EIIREARHQNYILHTKKGRVYRGSILEHILAQNLVQFFNVGRHNIIRLENADWNDGLD
                     MAPDHGESVTFSFMYAHNLKDICRYLRKLKKKAGSVDILEELTYLLDAKNPGINYSDY
                     KYKHNRLEEYLSRVRSISGQKRSIAVDDLISDLEAKAGHLFKWLKEKEWLGEGFFNGY
                     YDNKGNRVEGKTPGSAARMLLPSQVFAIMSGVASNEQIKKTWLSIKKHLRDRKLGGFR
                     LNTNFNSHHNLDLGRAFGFAYGDKENGAFFSHMSVMLANALYQRGFVKEGFEVINSIY
                     KMATSAQARIYPLIPEYFNGQGRGLYLYLTGSASWYIYTLLEEVLGIKFEDGDIYLEP
                     KLNSENFFNQDRIETAFSLQGNTVKVAFIREKKERNKVYKIKEVCLEEKRIIPSEGRY
                     LIKKEDLRKKENLVRVLLV"
BASE COUNT         1914 a         1762 c         1622 g         1852 t
ORIGIN      
        1 atttcgggat tatggctgta ggggcggttg ccgtccccat agaccccaaa ctgaccccag
       61 gggaaataat caacctcctg cgcgattccc aggcaaaaat actttttagc tctccggaac
      121 tcttcccttc cttaaaagat ttattaaaag acattcaggg cttaaagaaa accctgcttt
      181 atcctttccc ggaaatcacc gcgtcaaaac ccgcgcggga aataaatacc gcggacaaaa
      241 gcgaatggac cgcctctttg ctctacacct ccgggaccac ggcctcgccc aaaggggtaa
      301 tgctcaccca gaagaatttc tgctccaatt ttgagagcat ctccaaatta aatatcgtaa
      361 ccgccaagga taacatcgtg tccctgctcc ccctgcacca ttcttaccca tttatggtct
      421 gccttatcct cccgcttcta accggggcaa agatcacctt cctaaacagc ctgaagtccg
      481 aagacctgct taaatgcctg cgggaaacca aaggcgctat cttagtcgga gtgccccagc
      541 tctatcatct attacataaa tccatccttg agaagattgg caaacctgaa accttattat
      601 ccctattaaa aatcgtcaat tggacccgcc gggcctttgg cctgaacctg aataaaataa
      661 tcctcaagaa gctccaccaa agattcgggc cttccctgcg cttttttttc tccggagggg
      721 ccaggcttga accaaaagcc gcccgggaac tctcactttt aggctttaac ctcctggaag
      781 gctacggcct cactgaaacc tctccggtag ttaccttcac tccgccgggg agcgccaaat
      841 tcggctccgc gggactgccc atacccgggg ttaaaataaa gatccttaac ccaaacgcgg
      901 agggcattgg cgaggtcttg attaaagggc cgaatgtaat gcaaggctat tataacaaac
      961 ctcaagaaag ccaagaggca ttaaaagacg gctggtttta ctccggggat ttaggatata
     1021 ttgataagga cggctatctc ttccttaccg gccgttccaa agaagtgatt gtgcttgcca
     1081 gcggaaagaa catttatccc gaagagattg aggcatatta ccttaaagat ccttatatca
     1141 aggaaatctg tgttttggaa accagcgcgg gcggctcatc ctctctttat gccgtagtcc
     1201 tgccggatat tgaatatttc cgcaaggcca aagaggtgaa tatccagggc aaaatccgct
     1261 ggagcctgga agacctctcc aaaggactgc cctcatataa acggattatg ggctggaccc
     1321 tggccaggga tgaatttccc cgcacccgtt taggaaaact caaacgttac gaaatcaagg
     1381 ccaagtatct ggctcccctg ccgaaagaaa gcccggaaac cgtaaaaaca aaagaagaag
     1441 ctcttccgcc tgccgataaa ttagaaagac agatcataga attcttgggc cgggaattaa
     1501 aaagaaaggt cagtcccagc gaccatttag agctggatct ggggattgat tccctgaccc
     1561 gggtggagct ggctatcggc ctggaaaaaa tatttaacct taacctcgcg gatacggata
     1621 tggctgatgt ttttagcgta aaagagttga ttgaaaaaat ccgctgtctt ctggaacaaa
     1681 gacagaaaat tggcgatgcc gacaaataat cccccggaaa ccagcgatat attctgcgat
     1741 gatttacctt cggcgcctct atcagaggcg ggaaagatct tagtcagcgg ggcctccgga
     1801 tacattggcg gaagattagt gcccgagctc ctccaccggg gctataaagt aagggccctg
     1861 gtaagaggcg accccttaac ctataaaaat atctggccgg aggcggaaat agtcagggcc
     1921 gatgttttaa ataaagaaga gatacgaaac gccctttccg ggattgacac ggcttattat
     1981 ttgatccact ccctgcatct ggggctgaaa gaatttgaaa agacggacat cctggccgcc
     2041 cgcagtttcc gcgacggcgc ccaggaacaa ggagttaagc gaatcgttta tttaggaggc
     2101 ctgggagatg tgcgcagtaa gctttcctcg catctgcgca gccgggcgga agtagccaaa
     2161 gagcttaaga aaggcaaggt cccggttacg gtcttgaggg cggcggtaat catcggttcc
     2221 ggcagcgcgt cttatgagat catccagcac ctggcagtaa agctccccct tatttttatc
     2281 ccatactggg ccaaaaacaa atgccagccc attggagtgc gcgatgtgat caaatacctt
     2341 gtgggcgcct tagaaacccc cgagacccag ggaagaagtt ttgatatcgg aggaaaggac
     2401 gtattgacct atgaggagat gctgaaaacc tttacccatc tccttatgaa aaaaacaatc
     2461 tttattgatt tcccttttat tcctctaaag gtctacgcct attttgccag tctgtttacc
     2521 cctgtccccc ataccatcac ccgctgtctg atggagggct taaagaatga ggtcatttgt
     2581 tacgataact ctattaaagg ctgcctcccc tttgagcccc tttcttaccg ggaacaggtt
     2641 gtgcgcgccc tctccaggga agagcaggac cgggtctcca cccgctggtc agatgcctat
     2701 cacccttatt atgacctggc cttaaaacta tacgaagtca aacagccggt tacctacagc
     2761 gtcagatact ctattctcac cctaaatgag gcggacaagc tattccgttc tttttgcagg
     2821 atcggcggca ggaggggatg gttttactac aactggctct ggcgcttaag aggggccatt
     2881 gaccggatcc ttctgggcgt agggacgatc cggggcagaa aaagctattc ccacctcaaa
     2941 ataaatgatg tggtggattt cttccgggta gaggatattc gggaaaacca gctgttgctg
     3001 ctgcgggcag agatgaaaat ccccggccgg gcctggcttg agtttaatat taaggaagag
     3061 gccggcaaaa gaaggttatc ggtaatcgcc tattacaata cccagtcgtt attaggaaaa
     3121 ttctactggc atgcctgtct gcctcttcac cattttcttt ttcagaaact cctgataggc
     3181 atagaagata aggctaaata gctaaaaata tccaatagcc atcaagaaag catttccaac
     3241 atttattatt ttccctcttg actttttaaa attctatggt atactttggt taaatatggt
     3301 tggaggttaa acgctaaacg ggtcttatct cctgacgcca ctcacggaga gataaggcct
     3361 ttttccttaa cacaaggagg ataaagatga agaaaataat tgctttagta atgttaagtt
     3421 cgctgttgac ggctaatttg gtttcagccg cgaccaatgc cgccagctac agccaggccc
     3481 agaaggccca aacctttatc agcaatcaga ttaagggagt cggactggta gattcttatc
     3541 aggaggacga aaaggatgtt agttatgtat acgataacgc gttagcggca atggcctgca
     3601 tgaatatgaa taattacggc ctggccaaac gaatctttga cgccttgtgc aagaaggttc
     3661 agaaagacgg cacctacggc atcccttatg aaagctataa ttttaacact ggaaaaccta
     3721 taagttacaa cctgtattcc ggcaatgccg cctggctcct gcaggccttg aatatttatc
     3781 aaaagaaaca atcaagcaag acatattata ccgtccagaa gaaattggct gcctttctgg
     3841 taaaattcca ggattcctcc gacggagcaa taaagggaag caacaacgac tcctggaaaa
     3901 gcgccgagca taatattatg gcttatgtgg ccttgagaaa tttcggccgc ttgaacaatt
     3961 taagctctta tgtgactaag gcggataaag taaaggcctt tctcaccggt tcaagcatat
     4021 gggacgggga gcgttttaac cagggcaaga atgataccca cagggtaacc gatgttcagg
     4081 cgttagggac attgctctta ggaagcagtt actccagcgc tttaacctac gcggaaaaat
     4141 atctcaagct taccgactat tataattcaa aatccgttat cgggtttgat tttaacagcg
     4201 acctggacac cgtgtggctg gagggcaatc tccagatggc ccttgctttt tataaatccg
     4261 ggaataccac tactggggat tattattacg acgaggccgc caagaccatc cagagtgacg
     4321 gctcggtgat cctggctacc agcaccggat cagccagcga ctggtggacc cttcaggtct
     4381 ggagggccat tgcccccaca tcctggctga ttatgtatta caacaaattc agcccactga
     4441 cgctttatta aaccaataac actctgacaa ggttttcctt cttgcgcaga tcttcttttt
     4501 taataagata cctgccctct gaaggaataa tccgtttttc ttccaaacaa acttctttta
     4561 ttttataaac cttgttcctc tccttcttct ctcttataaa cgctaccttg accgtattgc
     4621 cctgcaagct aaaggcggtt tctatcctat cttgattaaa gaagttttcg ctgtttaatt
     4681 tcggctcaag gtaaatatcc ccgtcctcaa attttatccc caggacctcc tcaagcaggg
     4741 tatagatata ccagctggct gatccggtaa gatacaggta taacccccgg ccctggccgt
     4801 taaaatattc cgggattaag ggataaattc gcgcttgagc gctggttgcc atcttataga
     4861 tggaatttat cacttcaaaa ccttccttga caaaccctct ctggtataag gcattggcca
     4921 gcatcactga catatggctg aagaaggccc cgttttcctt gtctccgtag gcaaagccga
     4981 aggcccggcc taaatccaga ttgtgatggg agttaaaatt ggtgttcagg cgaaaacccc
     5041 ctaatttcct atcccggagg tgctttttta tggaaagcca ggtcttttta atttgttcgt
     5101 tgctggctac cccgctcatt atggcaaata cctgcgaggg aaggagcatc cgcgccgcgc
     5161 ttccaggagt ctttccttcc acccggtttc ctttattatc atagtaaccg ttaaaaaaac
     5221 cttcgccaag ccactccttt tctttgagcc atttaaacag gtgcccggcc tttgcttcca
     5281 ggtccgagat taaatcatca acggcaatgc ttcttttctg cccgctgatt gagcggaccc
     5341 ggcttagata ttcttccagg cggttatgtt tatatttata gtcgctataa tttattcccg
     5401 gattcttggc atccaggaga taggttaatt cctccaggat atccacactc ccggccttct
     5461 tcttaagctt acgcagatag cggcagatat ccttgaggtt atgggcgtac ataaagctaa
     5521 aagtcacgct ctcaccgtgg tcaggggcca tatccagtcc gtcattccag tcggcattct
     5581 ctaagcggat aatgttatgc ctgcccacat taaaaaactg gactaaattc tgggccagga
     5641 tatgctctaa aatagagccg cgatacaccc ggcctttttt tgtatgcaga atgtaatttt
     5701 gatgccgcgc ttcgcggatt atctccctgg agcgcttaaa ctgatggtcc tgaaaatagg
     5761 tgtcttcctg aagcaggata tccaggtccc cggtcttatt taaatacagc cgcagggtca
     5821 aatacggcca gatgccgtgg tccatccata cccggctgat ccggttgcgg tcagagagaa
     5881 attccccgtc tttggtaata atggtggcat tagagccgtc aacgcgcacc cctttaaaat
     5941 tattgatgag aaaactcttg gcctccggtc cggcttgagt caaaagcagg gtcagggcgt
     6001 cctgccagag gtcgcgccag cccctgccgc ccttaccgta atcaaaatgg ggcaggaaag
     6061 aacagccaaa gagcttgcgt aaggccggct ggagctttac ccagagcagc caattattga
     6121 aatccttatt cccgaaatta aattctaatc ccgaaagata gccctgccag tattttttgg
     6181 tctgttcaag gctgttttca accttttgcg gggaattaaa cctcttaaaa atatccttga
     6241 tgtcctttga attatcccct atccccataa tcaggaaata atccgcctcc tggttcttct
     6301 ttaagacttt ttcccggaat ctgaatgccg cgcaggcctc cttaccgtca aattccgcgg
     6361 atcccaggac tgccggctgg actgtttttt ctattgcctc gggatgaatg atgtcccccc
     6421 ggccgtagaa ataatctaag ctggggaatt ggccgatggg agccaggcct tcattttcaa
     6481 aacccaggac aaaataaatc gtttcgttgg cccggtgccc cttttcgtca aagaccatag
     6541 tcggcttgag gtaaataccg tgtttctcca aatatacccg gtttaaaagc gcggtaacat
     6601 ggcgatggtc ccgcaggcac ttttccgaac ggccgtaaag cggaataaaa gaggtgggga
     6661 tgattttgat atctttagcg cttttgtttc taacctttat ccgcatcagc tctaccgagg
     6721 catcaaaagg gacaaaatta agtatctcta tttccaggga ttttgtctgc ttggtgattt
     6781 tatgatacaa aagaccggcc tctaaggtat cgttataagg aaaagacagg cgcagagtgt
     6841 cggttttggt cttaataaaa aaatccctgc gggtaagaaa attactgcgc aggtcctcaa
     6901 tgcctgccgg aggggtgagg aagcgctcgt tatctttctt gatatccccg gccaggttag
     6961 ggctgatgga gcttaagata ctgccgtcct tattagtcag aggaaaataa agattatatc
     7021 tctggggatt tataactctg aatgccccct tatcgtcaat aaatttgtag atcattctaa
     7081 aatactcctg tgttaaaaat cagacatgtc caaattatga cattgtctct gacggaaaca
     7141 ctatttcgag
//
LOCUS       DATDUB010000133         2318 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1918221, whole genome shotgun sequence.
ACCESSION   DATDUB010000133 DATDUB010000000
VERSION     DATDUB010000133.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2318)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2318)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2318
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1918221"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..232)
                     /locus_tag="VJA84_02645"
     CDS             complement(<1..232)
                     /locus_tag="VJA84_02645"
                     /inference="COORDINATES: protein motif:HMM:NF037151.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1009 domain-containing protein"
                     /protein_id="HLD41056.1"
                     /translation="MEKIGLIAGRGNFPLLFAQQARKKGFFVSVVAVRNNTKRQIKDY
                     ADRLSWISVPEFKRIADIFKADGISKAAMAGQI"
     gene            complement(240..1034)
                     /gene="lpxA"
                     /locus_tag="VJA84_02650"
     CDS             complement(240..1034)
                     /gene="lpxA"
                     /locus_tag="VJA84_02650"
                     /EC_number="2.3.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013387561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008780 -
                     acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine
                     O-acyltransferase activity [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP--UDP-N-acetylglucosamine
                     O-acyltransferase"
                     /protein_id="HLD41057.1"
                     /translation="MIHQTAIVYPGARIAPDAEIGPFTVIGPKAKIGPMVKIGNSCLI
                     DGDTVIGAGCVIYNGAIIGSHPQDLKYKGEDTKLVIGENNIIREYTTINLGTIESGIT
                     QVGNNNLIMAYSHIAHDCIVGDNCVLANCATLAGHVKIEDRVVIGGLTAIHQFSRVGK
                     MSIIGGCSKVVQDIPPFSTCDGHPAKVYGLNLVGLRRSQVSNQAVANLKSAFKDLFFS
                     GLTKGNAINKVKETLAQSPEIAYLLDFLSSSHRGVAKSSKVPESSE"
     gene            complement(1035..>2318)
                     /gene="lpxC"
                     /locus_tag="VJA84_02655"
     CDS             complement(1035..>2318)
                     /gene="lpxC"
                     /locus_tag="VJA84_02655"
                     /EC_number="3.5.1.108"
                     /inference="COORDINATES: protein motif:HMM:TIGR00325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008759 - UDP-3-O-[3-hydroxymyristoyl]
                     N-acetylglucosamine deacetylase activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-acyl-N-acetylglucosamine deacetylase"
                     /protein_id="HLD41058.1"
                     /translation="PVSISGAGIHTGNKVNLRFKPAEINSGISFTRLDLPGKPEIKVD
                     CANLSETYQSLRRTTLAVSGAEVQTVEHLTAVLCALQIDNLIIEIDGAEIPGMDGSAG
                     EFLSVLKNAGIARQDAARKYFSLKEPIFVEEGPAKAAAFPAADFSICYTLDYDHPFLK
                     SQYKEIFVSPEAFESEIAQARTFCLKEEADDLQGKGLGKGATYQNTLVVGEKEVIKNT
                     LRFPDEFVRHKILDLIGDLYILGMPIKARIMAVRSGHSLNLKLVKKIYQQKLKAQMGA
                     IIFGSIPKEQELDVSMIMKILPHRYPFLLVDKVVSMESGKKITAVKNVTINENFFNGH
                     FPGKPVMPGVLIIEAMAQVGGIMMLSAPENRGKIAYFMAINEAKFRKVVSPGDQLIIE
                     VEAGKIKSRTGQVFGKAYVNGKLAAEGELMFALGE"
BASE COUNT          543 a          646 c          533 g          596 t
ORIGIN      
        1 taatctgtcc ggccatagcc gccttagata tcccatcggc tttgaatatg tccgcgatgc
       61 gcttaaactc ggggacgctg atccaggata atctgtccgc gtaatccttg atctgtctct
      121 tggtattatt ccggacggca accaccgaga caaaaaaacc ctttttcctg gcctgttggg
      181 caaagagcaa ggggaaatta ccgcgtccgg caatcaatcc tattttttcc atttacatct
      241 tattctgaag actctggaac cttagaagat ttggccacgc cccggtggga agaggacaag
      301 aaatccaaaa gataggcgat ttccgggctt tgggcaaggg tttccttgac cttatttatg
      361 gcattgcctt tagtcagacc gctgaaaaac aggtctttga acgcgctctt gagattggcc
      421 actgcctgat tagacacctg ggaccggcgc aggcctacca gattcaggcc gtagaccttg
      481 gccggatggc cgtcgcaggt ggaaaaggga gggatatcct ggaccacctt ggaacaaccg
      541 ccgataatgg acatcttgcc cacccgggaa aactggtgta tggcggttaa gcccccgata
      601 accacccggt cttcaatctt gacatgcccg gctaaagtgg cgcagttggc caggacgcag
      661 ttatccccaa ctatacaatc atgggcaata tgggaatagg ccattatcag gttattattg
      721 cccacctggg ttatgccgct ttcaatagtt cccaaattta tagtggtgta ttcgcggata
      781 atattattct ccccaatcac taatttcgtg tcctcgcctt tatactttaa atcttgaggg
      841 tgactgccga taatcgcccc gttataaatc acgcaccccg ctccgataac cgtatcgccg
      901 tcaatcaggc aggaattgcc tatctttacc atcggcccga tcttggcctt ggggccgata
      961 accgtaaaag ggccgatctc ggcatccggg gctattcttg cccctggata aactatagct
     1021 gtctgatgta tcatttattc ccccaaggca aacatcaatt cgccttcagc ggcgagcttg
     1081 ccgttgacat aggccttgcc gaagacctgg ccggtgcggc tctttatctt tccggcctcc
     1141 acctcaataa tcagctggtc cccgggactg accaccttac ggaacttggc ctcgttaatc
     1201 gccataaaat aggcaatctt gccccggttt tctggcgccg aaagcatcat tatcccgcct
     1261 acctgggcca ttgcctcaat aatcaagacc cccggcatca ccggctttcc cggaaaatgc
     1321 ccgttaaaga agttctcgtt aatggtgaca ttcttgacgg cggttatctt cttgccgctt
     1381 tccatagaca ctaccttgtc taccagtaaa aagggataac gatggggaag gatcttcata
     1441 atcattgaga catccaactc ctgctctttg ggtatactgc caaagattat ggcccccatc
     1501 tgggccttta atttctgctg gtaaatcttt ttaaccaatt tcaggttcag ggagtgcccg
     1561 ctcctgaccg ccattatcct ggccttgatg ggcatcccca ggatataaag gtcgccgatc
     1621 agatccagga ttttatgccg gacaaactca tccgggaacc tcaaggtatt cttgattacc
     1681 tctttctctc ccaccaccag ggtattctgg taagtcgccc ccttacctaa accttttccc
     1741 tgcaggtcat ccgcctcttc cttaaggcag aatgtcctgg cctgggcaat ctcggactca
     1801 aaagcctccg ggctgacgaa tatctcttta tactgcgatt tcaggaaagg atgatcataa
     1861 tccagggtat aacaaatgct aaaatcagcg gccggaaatg ccgcggcctt ggccgggcct
     1921 tcttcaacaa atatcggctc ttttagggag aaatatttcc tggccgcatc ctgccgggca
     1981 atgccggcat tctttaagac gcttaagaac tctcccgcgg acccatccat cccagggatt
     2041 tccgctccgt caatctcaat aatcaaatta tctatctgca aagcgcataa gaccgcggta
     2101 agatgctcca cagtctggac ctcggccccg gaaacagcca gggtggtccg ccttaggctc
     2161 tgataagttt ccgaaaggtt ggcgcagtcc acctttatct ccggtttacc gggaagatcc
     2221 aggcgcgtaa agctgatccc ggagtttatc tcggccggct taaaacgcag gttcacttta
     2281 ttgccagtgt gtatgccggc gcccgatatt gagaccgg
//
LOCUS       DATDUB010000134         3830 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_257252, whole genome shotgun sequence.
ACCESSION   DATDUB010000134 DATDUB010000000
VERSION     DATDUB010000134.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3830)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3830)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3830
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_257252"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..120)
                     /locus_tag="VJA84_02660"
     CDS             complement(<1..120)
                     /locus_tag="VJA84_02660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010692565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FmdB family zinc ribbon protein"
                     /protein_id="HLD41059.1"
                     /translation="MPTYEYECMSCGHAFEQFQNMSDKPLTKCPKCDKALRRLI"
     gene            complement(139..1293)
                     /gene="dnaJ"
                     /locus_tag="VJA84_02665"
     CDS             complement(139..1293)
                     /gene="dnaJ"
                     /locus_tag="VJA84_02665"
                     /EC_number="1.8.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004513687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA];
                     GO_process: GO:0009408 - response to heat [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HLD41060.1"
                     /translation="MATKRDYYEILGVNKSASVDEIKKTYRNLAMQHHPDRVPHEKKK
                     EAEEKFKEISEAYAVLSDSQKRSLYDQYGHSGIDQRYAYEDIFKGADFGSVFGDLKNS
                     GFGGGMFEEIFGDLGFDIFGGGRSRAPRARRGRDLQIETDITLEESYSGSEKTITVPR
                     YETCSTCQGSGAKPGSKKTTCGQCKGQGQVIMSSGFFQIRQTCPKCRGEGSIIAQVCP
                     ACQGEGRGRITRKIEVKIPAGVNTGSSLRIRGEGEAGTQGRGDLYVLINVLSNPDFER
                     HNNDILNEVKISLSKAILGGEAEVATLSGRVKMKIPPGTQAGKIFRLKEKGFPDPHSY
                     TRGDQLVRVKVEVPEDLTSAQKKLIEEFAASRGEDTERESFSDKVKKVFR"
     gene            complement(1429..3327)
                     /gene="dnaK"
                     /locus_tag="VJA84_02670"
     CDS             complement(1429..3327)
                     /gene="dnaK"
                     /locus_tag="VJA84_02670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012037073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HLD41061.1"
                     /translation="MAKVIGIDLGTSNSAAAVMEGGRPVIIPSAEGAGVASGKAFPSY
                     VAFTKDGQKLVGEPARRQAAINAEGTIQAAKRKMGSDYKFKAHGKDYTPQQIAAFILQ
                     KIKQDAESYLGDKVEEVVITCPAYFDDNQRQATKDAGEIAGIKVLRIVNEPTAACLAY
                     GLEKSQKEQKIMVFDLGGGTLDVTIMEMAQGVFEVKATSGDTQLGGTDMDDAIIDHIV
                     KEFKKDTGIDVKNDKMATQRVREAGEKAKIELSSTLTTDLNLPFITADATGPKHLTMN
                     FTRAKLEDLIGPIIDRCRHPMEQALSDAKLTSKDIDRIIMVGGPTRMPIVQKFVEDYV
                     GKKIERGVDPMECVALGAAIQAAIIKGDVKDVLLLDVTPLSLGIETLGGVNTRLIERN
                     TTIPTKKSQVFSTAADNQTAVTIRVLQGERQMADDNVELGRFDLVGIPTAPRGVPQVE
                     VTFDIDANGIVHVAAKDLGTGKEQSIRITAPKKLSKEEIDKMVRDAEKFAAEDSRHKE
                     EVELKNQADTLVYSTEKSLKELGDKISASDKENIQKKADELKETLKGKDSSRIKAGIE
                     ELTKASHKLAEEVYKQSAANKQEAEQGPAQEQNTDERRSKADKETKDKKKGDDVIDAE
                     YKAEDEKK"
     gene            complement(3420..>3830)
                     /locus_tag="VJA84_02675"
     CDS             complement(3420..>3830)
                     /locus_tag="VJA84_02675"
                     /inference="COORDINATES: protein motif:HMM:NF013212.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000774 - adenyl-nucleotide exchange
                     factor activity [Evidence IEA];
                     GO_function: GO:0042803 - protein homodimerization
                     activity [Evidence IEA];
                     GO_function: GO:0051087 - protein-folding chaperone
                     binding [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HLD41062.1"
                     /translation="LQADFDNARKRMEKQTQDFAKYATEGIILELLTIMDDLERSTQA
                     AENKNANLDTFLKGIEMVLAHLYEMLKSHGIKPVEAQGKLFDPHTSEPLMQVASELPE
                     HTVIEELQKGYFLHERVIRTAKVKVSSGKTQETK"
BASE COUNT          751 a         1022 c          895 g         1162 t
ORIGIN      
        1 gatcagccgg cgcagggcct tatcgcattt cgggcatttg gtcaagggtt tgtcggacat
       61 attctgaaat tgctcaaagg catgtccgca ggacatgcat tcgtattcgt aggttggcat
      121 tgatttgttc ctccttgttt atctaaagac ctttttcact ttatcgctaa agctttctct
      181 ttctgtatct tccccgcgcg aggcggcgaa ttcctcaatc agctttttct gcgcggaggt
      241 taaatcttcg gggacctcca cttttactct taccaactgg tctccccggg tatagctgtg
      301 cgggtcaggg aagccttttt cttttaaacg gaagatcttt ccggcttgag tccctggcgg
      361 tatcttcatt tttaccctgc cgcttaaggt agccacctcc gcttctcctc ccagtatggc
      421 cttgctcaag cttattttca cctcattcag gatgtcgtta ttgtgccttt caaaatcagg
      481 gtttgaaagc acatttatca gcacatagag gtcgcctctg ccctgggtgc cggcctcgcc
      541 ttccccgcgt atccttaagg atgagccggt gttcacgccc gcggggatct tgacctcaat
      601 cttacgggta atccggccgc ggccttctcc ctggcaggcc gggcagacct gggcaatgat
      661 tgaaccttca ccccggcatt tggggcaggt ctggcggatc tgaaagaacc cgctggacat
      721 tattacctgg ccctggcctt tgcattggcc gcaggtagtt ttcttagagc cgggttttgc
      781 cccggagccc tggcaggtag agcaggtttc ataacggggc acggtaatgg tcttctcgct
      841 tccggaatag gattcttcta aagtaatgtc ggtttctatc tggaggtccc ttccccttct
      901 tgcccggggg gccctggaac gcccgccgcc gaatatgtca aagcctaaat ccccgaatat
      961 ctcttcaaac atccccccgc cgaaaccgga gtttttcaag tccccgaata cgctcccaaa
     1021 gtcagcgcct ttaaagatat cttcataggc atagcgctgg tcaatcccgg aatggccgta
     1081 ttggtcataa agggagcgtt tctgggaatc cgaaagcacg gcataggcct cggagatttc
     1141 cttgaatttc tcctcggcct ctttcttttt ttcgtggggc acccggtccg gatgatgctg
     1201 catagccagg ttcctgtagg tcttttttat ctcatctaca gaagcgcttt tatttacccc
     1261 taatatctcg taataatccc gtttggtagc cattctaaaa actcaaaagt taaaagtcaa
     1321 aatgcaaaat tacaattaaa aatttaaaaa cattttgata ataaaaactt gattcctgcc
     1381 aaggatttta ttttttaatc tttagttttg acttttgact tttacctttt actttttttc
     1441 gtcctcggcc ttatactcgg cgtcaattac atcgtcgcct tttttcttgt ctttagtctc
     1501 tttatcggcc ttggagcggc gctcgtcagt gttctgctct tgggctgggc cttgttctgc
     1561 ctcctgcttg ttcgcggcgg actgtttata tacctcttcc gcgagtttat gggaggcttt
     1621 ggttaattcc tcaattcctg ccttaatccg tgagctgtct tttcctttca aggtctcttt
     1681 tagttcatcc gccttcttct ggatattctc cttgtccgaa gcggagattt tatctccgag
     1741 ctctttcagg gatttttccg tggaataaac cagggtatcg gcctggtttt ttaactccac
     1801 ctcttctttg tgcctggagt cttccgcggc gaatttttcg gcatccctga ccatcttgtc
     1861 aatttcttct ttggaaagct ttttaggggc ggtgatgcgg atggactgct ccttgccggt
     1921 gcctaaatct ttggccgcca catgcactat gccgttagcg tcaatgtcaa aggtcacctc
     1981 tacctgcggc actcctctgg gcgcggtggg tatgcccacc aagtcaaacc tgcctaattc
     2041 cacattatca tcagccatct gtctttcccc ctgcaggacc cggatagtta ccgcggtttg
     2101 gttatccgcg gcagtggaga aaacctggct ttttttggtg gggatagtgg tgtttctctc
     2161 aattaagcgg gtatttaccc cgcctaaggt ttcaatgcct aatgacaggg gcgtaacgtc
     2221 caaaagcagg acatccttta cgtcaccctt gatgatagcc gcctggatgg ccgcgcctaa
     2281 ggccacgcat tccatcgggt caaccccgcg ttcaatcttt ttacccacat aatcctccac
     2341 gaatttctgg actatgggca ttcgggttgg tccgccgacc ataataatgc ggtcaatatc
     2401 cttagaggtc agcttagcgt cagagagcgc ctgctccata ggatggcggc agcggtcaat
     2461 gatcgggccg attaaatcct ctaatttggc ccgggtaaag ttcatagtca agtgttttgg
     2521 cccggtggca tcagcggtga taaagggcag attgaggtct gtggtcaagg tgctggaaag
     2581 ttctatcttg gccttttccc cggcctcgcg cacccgctgt gtggccatct tgtcattctt
     2641 tacatcaatg ccggtgtctt tcttaaattc cttgacaata tggtcaataa tggcatcgtc
     2701 catatccgtg ccgcccaact gggtgtcccc ggatgtggcc ttgacctcaa atactccctg
     2761 ggccatttcc attatggtaa catcaagcgt ccctccgccc agatcaaaga ccataatctt
     2821 ttgttctttt tgggactttt ccaggccata ggccaggcag gcggcagtag gttcgttgac
     2881 gatgcgcagg accttgatcc cggcgatttc tccggcgtct ttggtggcct ggcgctggtt
     2941 atcgtcaaaa taggccgggc aggtgatgac cacttcttcc accttatctc ccaggtagct
     3001 ctcggcgtcc tgcttgatct tttgtaaaat aaatgccgct atttgctgcg gggtgtaatc
     3061 tttgccgtgg gccttaaatt tataatcact gcccatcttg cgtttggccg cctggattgt
     3121 gccttcggca ttgatggccg cctgccggcg ggccggctcg cccaccaatt tctgtccgtc
     3181 tttggtaaag gcgacatagg aagggaaggc cttgcctgaa gccaccccgg cgccttcagc
     3241 ggaaggaatg attaccggcc tgcctccctc cattaccgcg gccgctgaat ttgacgtccc
     3301 taaatctata ccgattactt ttgccatatc aaacctccta tataatggtt aaaagctatg
     3361 ggtcgatagt caatagtcga tagtctatgg gctatcgacc cctttatttt tctcaataat
     3421 tactttgtct cttgggtctt tccactggaa acctttacct tggcggtgcg gattacccgt
     3481 tcgtgcagga aatagccctt ttgcagttcc tctattaccg tatgttcagg aagctctgaa
     3541 gccacctgca taagcggttc tgatgtatgc gggtcaaaga gtttgccttg ggcctcaacc
     3601 ggttttatcc catggctctt aagcatttca tacagatgcg ccaggaccat ctcaatccct
     3661 tttaagaatg tatccagatt agcattctta ttctcggcgg cctgggtgct cctttccagg
     3721 tcgtccataa tagtaagcaa ttccaggatt atcccttcag tggcgtattt ggcaaagtcc
     3781 tgggtctgtt tttccatccg tttgcgggcg ttatcaaaat ccgcctgcaa
//
LOCUS       DATDUB010000135         3740 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_2110565, whole genome shotgun sequence.
ACCESSION   DATDUB010000135 DATDUB010000000
VERSION     DATDUB010000135.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3740)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3740)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3740
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2110565"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1342)
                     /locus_tag="VJA84_02680"
     CDS             complement(<1..1342)
                     /locus_tag="VJA84_02680"
                     /inference="COORDINATES: protein motif:HMM:NF013713.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41063.1"
                     /translation="MTFITLSLGIGSILAQFILFRELQTAFQGNELSLSVILFCWLLG
                     AGLGGLLAKGLKPRRVSLKTLACLFLGFGLFCFFSLFLSRGLKYYLRLSPFEILQPLQ
                     ILLISAAVIMPLTLIMGMSFIHICRITNNPVKTYSWEAGGAFLAGLLSIVLIKYLNSS
                     QIMAIVSLLFLICGFFIISLRANDRTPRNDWFWFLIFLVLSAVLCIPSIKLLERFEHQ
                     SQALRFKPQELVKAASSVYANIAITRNRSQFSLYENGRLSFSSEDTEAVEEFSHFILL
                     SHPNPEDILLIGSGISGVIAEIVKHPIKSLSYIEPDKKLIDMAREFIPQSAFYGLKDS
                     RLKIYHQDARSFLNKTLNKYDIIILNLGDPSSLQLNRFYTVEFFRKIRPLLKPSGIFC
                     LAFSSKEDILAAQMLKYNSSLYQSAKTVFNGIELIPGERLILLCSPDKAFRINPD"
     gene            1499..2269
                     /locus_tag="VJA84_02685"
     CDS             1499..2269
                     /locus_tag="VJA84_02685"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR00046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RsmE family RNA methyltransferase"
                     /protein_id="HLD41064.1"
                     /translation="MRICYLPKDKIGDRLIISDPMQIRHLAVVLRLKRGDEVCAFDGK
                     DNEHLCQIEEIAKNKLTLIIRQTKTVSLSQGAMARLPIAVAINDKEITLACAIPKNVK
                     MDYIIQKTTELGVSRIIPIRTKRTIVKIDPKKAADKHKRWQRIAQEASKQCKRIRFPL
                     IDPVREFKDVLSEISRYDLAIIPNLEKGNKAIANAVNAFKGKSILFFIGPEGDFTPDE
                     IASAREKGCVGVSLGDLVLKVDTAAIAVTAFLRFMGAK"
     gene            2447..3688
                     /gene="mtaB"
                     /locus_tag="VJA84_02690"
     CDS             2447..3688
                     /gene="mtaB"
                     /locus_tag="VJA84_02690"
                     /inference="COORDINATES: protein motif:HMM:TIGR00089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-
                     methylthiotransferase MtaB"
                     /protein_id="HLD41065.1"
                     /translation="MKTFELKTLGCKVNQYESQALRERLLGLGLKEAPEKAADICIVN
                     TCSVTRKAEADSLETVRAFNRNNPQAKIFVTGCSAQNSPEIIKRLNGVHAVLGNDQKE
                     SFPVLLAAKDTPADASLNQPEISAFHKHTRAFLKIQDGCNYGCSYCIIPKLRGASRSR
                     QLARIVKEAKQLADNGYKEIVLCGICLGAYGRDFGCKDGLIKVMEELERIEGLPRLRL
                     SSIEASDVRPALIRKMGDSPKVCRHLHIPFQSGDDEILKLMRRKTLTEGYRRLIRALR
                     RQSPYIGITTDIMIGFPGEKETNFKNTLNFLKEVRPSRIHIFPFSGRPNTPAYHFKDT
                     IQNGIIKERAKIMKALAKELAQDFYRENLDRELDVLVEANSGYSSNYIKVYIANANIP
                     PNSLIKVKADRLYQDGLRAEL"
BASE COUNT         1102 a          833 c          917 g          888 t
ORIGIN      
        1 catccgggtt tatccggaaa gccttatctg gcgagcagag caggattagc ctttctccgg
       61 ggataagctc tatgccatta aataccgttt ttgcgctttg gtaaagcgaa gaattatact
      121 taagcatctg ggcggccagg atatcttctt ttgagctgaa ggccaggcag aatatccctg
      181 acggttttaa taggggccgg attttccgga agaattccac cgtataaaaa cgatttagct
      241 ggagactgga agggtcgccc aggttaagga taattatgtc gtatttattc agtgttttat
      301 ttaagaaaga cctggcatct tgatggtaaa tcttaagccg ggagtctttg agcccataaa
      361 aggcagattg ggggataaat tcgcgcgcca tatcaatcaa ctttttatcc ggttcaatat
      421 agcttaagct cttaatcgga tgcttgacaa tctcggcgat aacccctgaa atcccggaac
      481 cgataagcag gatgtcttcc ggattaggat ggcttaataa aataaaatgc gaaaactcct
      541 ctacggcttc agtgtcttcg ctgctgaaag agagccttcc attctcataa aggctgaact
      601 gggagcggtt tcgggtaatg gcgatgttgg cgtagacgga agaggcggct ttaactaact
      661 cttggggctt aaaacgtaag gcctggctct gatgttcaaa cctttctaac agctttatag
      721 aagggataca gaggacggcg gataaaacta gaaaaataag aaaccaaaac cagtcattgc
      781 ggggagtccg atcgttcgct cgcaatgaga tgatgaaaaa tccgcagatt aaaaagagca
      841 gagaaactat agccataatc tggctgctgt tcaggtattt tattaagaca atgcttaata
      901 gcccggccag aaatgccccg cctgcctccc aggaataggt tttaaccggg ttattggtaa
      961 tccggcagat gtggataaaa gacatcccca taatcaaggt caagggcata attacagccg
     1021 ccgaaatcag gagtatttgc aaaggctgaa ggatttcaaa ggggcttaaa cgcagatagt
     1081 atttgaggcc gcggcttaag aataagctaa agaaacaaaa caggccaaac cccaggaaaa
     1141 ggcaggctaa ggtttttaag gatactctcc gaggcttaag tcctttagcc aaaagcccgc
     1201 ccagaccggc ccccagaagc cagcagaaca atattacgct taaggaaagc tcattgccct
     1261 gaaaggcggt ttggagctcc cggaagagga taaactgggc caggattgaa ccgatgccta
     1321 agcttaaggt tataaaagtc attaaaggtt tgacaattaa agctcttttc tatattataa
     1381 accttaatat ccggtattgc cacagattat tagaacaaca atatgggtca atagtcgata
     1441 gtctatagtc aatagaccat tgaccatcga ctgtcgaccc attatatttt ccaccactat
     1501 gcgtatatgt tatttgccta aagataaaat tggagacagg ctcataatct ctgatccgat
     1561 gcagatccgt catctggcag ttgtcctacg cctgaagcgc ggggatgagg tctgtgcctt
     1621 tgacggaaaa gataatgaac acctctgtca aatagaagaa atcgccaaaa ataagctaac
     1681 cctgataatc cggcagacta aaaccgtttc tctaagccag ggggcgatgg cgcggcttcc
     1741 gatagccgta gccataaacg ataaggaaat taccctggcc tgcgctatcc ctaagaatgt
     1801 caaaatggac tatattatcc aaaagaccac agaattggga gtcagccgga taatcccgat
     1861 ccggactaaa aggaccatag taaagattga ccccaaaaag gcggcggaca aacataaacg
     1921 ctggcagagg attgcccaag aagcttccaa gcaatgcaag agaataagat tcccgcttat
     1981 agacccggta agggaattta aggatgtcct ttcagagata tcccgctatg atttggccat
     2041 catcccaaac ctggaaaaag ggaacaaagc tatcgcaaat gcggtaaacg ctttcaaggg
     2101 aaaatccata ctattcttta tcggcccgga aggcgatttc actcctgatg agattgcctc
     2161 ggcgagagaa aaaggatgcg tgggggtttc tttgggagat ttagtcctta aagtggatac
     2221 cgcggccatt gccgtaacag cattcctgcg ctttatgggc gcaaagtagc gatgcctgtc
     2281 ggactgcggc aggtgttcag cgcgcagttc cgcaggcgtc attccataat gtaattatcc
     2341 agaaaaacgc cgaggatgtt tgagcacgga atacctgacg cagtccggct taagccatag
     2401 tgcttttgtg cgcccgcgat tattgagttg ctatggagat tttcagatga agacatttga
     2461 gctaaaaact ttaggttgta aagtaaacca gtatgaaagc caggctttaa gggagaggct
     2521 tttaggcttg ggtcttaaag aggccccgga aaaggccgcg gatatctgca tagtcaatac
     2581 ctgctccgtt acccggaagg ccgaagcgga ttctttagag actgtccggg cctttaaccg
     2641 gaataacccc caggccaaaa tctttgttac cggctgttcg gcccaaaaca gcccagagat
     2701 aataaaaaga ctaaacggag tccacgcggt cttaggcaat gaccagaaag aatcttttcc
     2761 ggtcctcctg gccgcgaaag atacacccgc ggatgcatcc ttaaaccaac ccgaaatcag
     2821 cgcctttcac aagcataccc gggccttcct gaaaatccag gatggctgta attacggctg
     2881 ttcctactgc ataatcccta aactccgggg ggcatcccgc agccggcagt tggcccggat
     2941 agtcaaagaa gctaagcaat tggcggataa tggctataag gaaattgtcc tctgcgggat
     3001 atgtttaggg gcgtatggaa gggatttcgg ctgcaaggac ggtttaatca aagtgatgga
     3061 agaattagaa aggattgaag gcctgccgcg cctgcgtttg agttctattg aggcctcgga
     3121 tgtccgtcca gccttaatcc ggaagatggg agattccccg aaggtctgcc ggcacctgca
     3181 catacccttc cagagcggag acgatgagat cctgaaattg atgcgccgca agactttgac
     3241 tgaagggtat cgccggctga tcagggcctt gcgccggcag tcgccttata tcgggattac
     3301 caccgatata atgatcgggt tcccgggaga gaaagagact aatttcaaga acacccttaa
     3361 cttcttgaaa gaggtccgtc ccagccggat acatatcttc cctttcagcg gccgtccaaa
     3421 taccccggct taccatttca aagatacgat acaaaacgga ataatcaaag aaagggctaa
     3481 gataatgaag gccctggcca aagaattagc ccaggacttt taccgggaaa acctggatcg
     3541 agaattggat gtcttggtag aggcaaactc cggatacagc agtaattaca ttaaggtcta
     3601 cattgccaat gccaatattc cccctaattc attgataaaa gttaaggcgg atagactgta
     3661 tcaagatggt ctgcgggctg aattatgata tacgctaaag tggccttgcc attgcctata
     3721 gaccgattgt ttgattattc
//
LOCUS       DATDUB010000136         3338 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1095369, whole genome shotgun sequence.
ACCESSION   DATDUB010000136 DATDUB010000000
VERSION     DATDUB010000136.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3338)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3338)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3338
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1095369"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..243
                     /locus_tag="VJA84_02695"
     CDS             <1..243
                     /locus_tag="VJA84_02695"
                     /inference="COORDINATES: protein motif:HMM:NF014460.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HLD41066.1"
                     /translation="SSMYLNMTFDSLQVKDMTTGLIKTLVFGIIIAMVGCLEGMRTEG
                     GAEGVGKATTVSVVTSFILIIAADCVFTAIFYFIFP"
     gene            240..638
                     /locus_tag="VJA84_02700"
     CDS             240..638
                     /locus_tag="VJA84_02700"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HLD41067.1"
                     /translation="MIEITDVYKNFNSKKVLNGVNLKINKGETKVIIGRSGCGKSVLL
                     KHIVGVLRPDRGRITVEGQDISEVSSKELNSLRMRMAMVFQGGALFDSLNVARMWVLL
                     YTSIPSLAIRKLKNRWKNRSPMWSSMAYKS"
     gene            533..991
                     /locus_tag="VJA84_02705"
     CDS             533..991
                     /locus_tag="VJA84_02705"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HLD41068.1"
                     /translation="MGFTLYEYSKLSHKEIEEQVEESLSNVELHGIQKLMPSELSGGM
                     KKRVAIARALCGRPEIILYDEPTTGVDPITADSINKLIRSLHDKFKVTSIVVTHDMKS
                     AYSIADNMAMIYQGKIIAEGTPEEIQKTKHPVVYQFINGLSQGPITETIL"
     gene            1147..1797
                     /locus_tag="VJA84_02710"
     CDS             1147..1797
                     /locus_tag="VJA84_02710"
                     /inference="COORDINATES: protein motif:HMM:NF014523.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MlaD family protein"
                     /protein_id="HLD41069.1"
                     /translation="MTGKSRLELAVGIFIVVGLIIFVSFVFLVRDFQIVKPGYKFDVI
                     FGFANGLKVGSPARLSGVDVGEVKSSEIFFDQASSTSKVRVKVWVKKDARIPVDSQFW
                     INTLGLLGEKYLEIMPGKDYQTLVKENDGIAGSDPVPIDEITKETKKLVLQIEEAVSS
                     LNTMLAQVKSGEGTLGKFFYDETVYKNIEGLTEDLRRHPWKLFWKTKEKPVKKQIR"
     gene            1798..3174
                     /gene="radA"
                     /locus_tag="VJA84_02715"
     CDS             1798..3174
                     /gene="radA"
                     /locus_tag="VJA84_02715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018395129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HLD41070.1"
                     /translation="MKTKSVFSCQTCGYQSAKWLGRCPDCSAWNSFAEETFSQPQAQG
                     ESRLLRAALSADAKPVLLKEVKQADDIRVKTGISELDRVLGGGVVKGGVSLLGGDPGI
                     GKSTIALQISHQLARAGQKVLYISAEESVQQTKLRAERLGADKTENIYVVNQTDLSII
                     IEYIKKIKPDTVIIDSIQVIFNPQIPSSPGSVSQVRECSNILAQTAKGLGVSMFIIGH
                     VTKEGSIAGPRVLEHIVDTVLYFEGQRNSAYRILRAMKNRFGSTNEIGVFQMGALGLE
                     EVANPSQVFLSERTKDGSPGSVIASVMEGTRPMLLEIQALVSRSFFGYPSRKSEGFDA
                     NRLNLIIAVLEKRIGLHLENEDVFVNAAGGVSVDDPACDLAVAAAVASNLKEKPAKKD
                     TVVIGEIGLSAEVRSVHQITLRIQEAQRLGFKQCIIPKNNFEPGIKAKIELIPAANIS
                     EAFEALFN"
BASE COUNT          891 a          706 c          929 g          812 t
ORIGIN      
        1 tcaagtatgt acctgaatat gacctttgat tcactgcagg taaaggatat gactaccggc
       61 ttgatcaaga ccctggtctt cggaataatc atcgcgatgg tcggctgtct ggaagggatg
      121 cgcaccgaag gcggggccga aggggtaggc aaggccacca ccgtatcggt ggtaaccagc
      181 tttatcctga ttattgccgc ggattgcgtg tttaccgcga tattttattt tatatttcca
      241 tgatagaaat cacggatgtc tataagaact ttaattctaa aaaagttctc aacggggtta
      301 atcttaagat aaataaaggc gagaccaagg tcattatcgg ccgttccgga tgcggaaaaa
      361 gcgtattatt aaagcatata gtcggggtct tgcgcccgga cagaggcagg atcacggttg
      421 aaggccagga catctccgag gtttcatcca aggagcttaa ttccttaagg atgcgtatgg
      481 ctatggtctt tcagggcggg gcattgtttg attccctaaa tgtggcgaga atgtgggttt
      541 tactttatac gagtattcca agcttagcca taaggaaatt gaagaacagg tggaagaatc
      601 gctctccaat gtggagctcc atggcataca aaagctgatg ccatcggaac taagcggggg
      661 gatgaagaaa cgggtggcta ttgcccgggc cttgtgcggc aggccggaga ttattctcta
      721 tgacgagccg accaccgggg ttgacccgat taccgccgac agcatcaata agcttatccg
      781 ctctctgcac gataaattta aggtaacttc tatcgtggtg acccatgata tgaaaagcgc
      841 ttacagcata gccgataata tggctatgat ttatcaggga aagattatcg ctgaagggac
      901 gccggaggag atccagaaga ccaagcatcc ggtagtctat cagtttatta acggcttgag
      961 ccaaggtccg attacggaaa ctatattgta ggaaaaataa taacgggtcg atggctttgg
     1021 cttatcggaa gccaaaccat ggcctggtgg ccaatagtcg acggtcaata gtcaatagag
     1081 aaaatataga ccatagacta tagaccattg acccttaata attgtcttaa tggggaggaa
     1141 ttataaatga ccggtaaatc ccgtttggaa ttggcagtgg gcatattcat tgtggtgggg
     1201 ttgattattt ttgtatcctt tgtctttctg gtgcgcgact tccagattgt caagccgggg
     1261 tataaatttg atgttatttt tggctttgcc aacgggttaa aggtcggctc gccggcgagg
     1321 ctttcgggag tggatgtggg agaagtcaag agttcagaaa tattttttga tcaagcctct
     1381 tcaacctcca aagtcagggt aaaagtctgg gttaaaaaag acgcgcggat accggttgat
     1441 tcccagtttt ggatcaatac cctgggcctt ttgggagaga aatacctgga gataatgccc
     1501 gggaaggact atcagacctt ggttaaggaa aatgacggca tagccggaag cgatcccgtg
     1561 ccgatagatg agattaccaa agaaactaaa aaattagttt tgcagataga agaagcggtc
     1621 agcagcctga acactatgct ggcacaggtc aaatccggcg aaggcaccct gggcaagttc
     1681 ttttacgatg aaacggtcta caagaatatt gagggactga ccgaagacct gcgccgccac
     1741 ccctggaaac ttttctggaa gactaaagag aagccggtta agaaacaaat aagatagatg
     1801 aaaaccaaaa gcgtgttctc ctgtcagacc tgcgggtatc agtcggctaa gtggctgggg
     1861 cgctgtccgg attgctcggc ctggaatagt ttcgcggaag aaactttcag ccagccgcag
     1921 gcgcagggag aatcccgtct gcttagggcg gctttgtcag ctgatgccaa gccggtgctt
     1981 cttaaagagg ttaagcaggc ggatgatatc cgggtgaaga ccgggatttc cgagttggac
     2041 agggttcttg gcggaggagt agtcaaaggg ggggtgagtt tattgggagg ggacccgggc
     2101 atcgggaaat ccacgattgc cctgcagatt tcccatcagt tggccagggc cggacaaaag
     2161 gtgctttata tcagcgccga ggaatcggtc cagcagacca agcttagggc cgagaggctg
     2221 ggagcggaca aaactgaaaa catttatgtg gttaaccaga ctgacctctc aattattatt
     2281 gagtatatca agaagataaa gccggatacg gtgattattg attctatcca ggtcatcttt
     2341 aatccccaaa taccttccag tcccggttcg gtaagccagg tccgggagtg ctccaacatc
     2401 ctggcccaga ccgccaaagg gctgggggtt tctatgttta tcatcggcca tgtgactaag
     2461 gaaggctcta ttgccgggcc gcgggtatta gagcatatcg tggataccgt gctttatttt
     2521 gaagggcaga ggaattcagc ataccggata ctgcgggcaa tgaaaaaccg ctttggctca
     2581 accaatgaga ttggggtttt tcaaatgggg gcgctgggtt tagaggaagt ggctaatccc
     2641 tcccaagtct ttctttccga aaggaccaaa gacggctccc ccggttcagt gattgcctcg
     2701 gtaatggagg ggacgcggcc catgctctta gaaatccagg ctctggtatc cagaagcttc
     2761 ttcggttatc cctcccgtaa atccgaaggt tttgacgcca accggcttaa tctgattatc
     2821 gcggtgctgg aaaaaaggat aggcctgcat ttggagaatg aggatgtctt tgtcaacgcc
     2881 gccggcgggg tgtctgtgga tgacccggcc tgcgacctgg cggtggccgc ggcagtggcc
     2941 tctaatctta aggaaaagcc ggcaaaaaaa gatacggtgg taatcggaga gatcggtttg
     3001 tccgcggagg tccgtagcgt gcatcagata accttgagga tacaagaggc ccagcgcctg
     3061 ggatttaaac aatgcattat tcctaagaat aactttgaac cggggattaa ggctaaaatt
     3121 gagctgatcc ccgcggctaa tatcagcgag gcctttgagg ccctgtttaa ttgaaagggt
     3181 caatagtcaa tacaaaccag gcgtgtccaa attaaaaacc agttttccgg cgcgatgagt
     3241 attttgagat tcgattttag attgtcattg cgaggagcga agcgacgaag caatcccgtc
     3301 gcaagagatt gcttcgctcc gctcgcaatg acgctaat
//
LOCUS       DATDUB010000137         5066 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_2262177, whole genome shotgun sequence.
ACCESSION   DATDUB010000137 DATDUB010000000
VERSION     DATDUB010000137.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 5066)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5066)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5066
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2262177"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..892
                     /locus_tag="VJA84_02720"
     CDS             <1..892
                     /locus_tag="VJA84_02720"
                     /inference="COORDINATES: protein motif:HMM:NF019883.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="toprim domain-containing protein"
                     /protein_id="HLD41071.1"
                     /translation="RLLKRYSRNIVMIYDADDAGQSATMRSLELLVEEDMNVKVVRLE
                     KGYDPDAYLRHSGAREFRDLIQGAKDTVDYMLDTLKAKYDPKDISQKARIASEILPLV
                     AKFKNEVLKSEYLKKLSQELGVSESSLAAELKKTKGNSAGLEPANRQAKSFCAESMLV
                     KILLEENELIEHLREKILPRDFKDNCLSRILARMFELSYEKENIEPQVLLNHFSETEV
                     SQTICELAASEMPKITDKLKLLNDCVNKIKEKSRKSKQQELCDQIRLAQHSKDENRIY
                     ELLNEFQFLTKKGCEEDGKE"
     gene            879..2450
                     /gene="rpoD"
                     /locus_tag="VJA84_02725"
     CDS             879..2450
                     /gene="rpoD"
                     /locus_tag="VJA84_02725"
                     /inference="COORDINATES: protein motif:HMM:TIGR02393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD"
                     /protein_id="HLD41072.1"
                     /translation="MAKNNNIRQDLKKIIDLGKQKGFLTYDELNDLLPEDISSMEEID
                     KIFDLLGSEDIRIVSAIQDKDKEKEAATDESREYAEEKIIPEDRFLPLDDPVKMYLKQ
                     MGSIPLLSRDEEITLAKNIEATEKALCEAVYLTPFSRNETLKVINRLFEKEANLEDII
                     KEEIKVKKESVLKRLGRIAQRLKYSRNPKNNVGLISSCGFVISIAEKTTKRFMEFSRE
                     LDEINRKLEYDKKQRRKKSRPELAQRKAAVIKTLCGMSAEEIKEHTKIIRGRFLKFNR
                     AKKKLVEANLRLVVSIAKKYTNRGMSFLDLIQEGNIGLMRAVEKFEYKRGYKFSTYAT
                     WWIRQAITRSIADQARTIRIPVHMTEIINKIMRVSRIFVQEFGRDPLPDEIAKEMRMS
                     QEKVKAILKVAQEPISLQTPIGDEGDTHFGDFIEDKRAVSPANATVHSMLKDHMSSAL
                     DTLNDRERKILLLRFGLEDGTARTLEEVGKIFKVTRERVRQIEAKALKKLRHPTRSRK
                     LRAFLDMAIAGEREY"
     gene            2457..2527
                     /locus_tag="VJA84_02730"
     tRNA            2457..2527
                     /locus_tag="VJA84_02730"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2489..2491,aa:Gly,seq:tcc)
     gene            2553..2972
                     /locus_tag="VJA84_02735"
     CDS             2553..2972
                     /locus_tag="VJA84_02735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007359126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="secondary thiamine-phosphate synthase enzyme
                     YjbQ"
                     /protein_id="HLD41073.1"
                     /translation="MESFREYLYFQTKTRRAYINITPQVEALIAKSRIKEGLCLVNAM
                     HITASVFINDDENGLHKDFDKWLERLAPHEPVSNYEHNLTGEDNADAHLKRQIMGREA
                     VVAITDGKLDFGPWEQIFYGEFDGMRKKRVLVKIIGE"
     gene            2975..3754
                     /locus_tag="VJA84_02740"
     CDS             2975..3754
                     /locus_tag="VJA84_02740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015948878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidylate synthase"
                     /protein_id="HLD41074.1"
                     /translation="MPEEFLKPVHIEAFDLDDAWFQALCAIIEKGHIYTIDRGSYQGQ
                     KRLEFDFVSIRVKKPSHQIIPVIPEGMSIPAPTDMDYVQGYLSYLLTGNKTATEDYTY
                     GERLVDAKVRLKEGGLIKEMPLEVNQVEEVIRMYKTHGFGTNQATMEIGMPSDIKLDD
                     PPCLRIIDTRVRYGKLHFILYFRSWDLWGGFPSNLGGLQLVKQHMASEIGVEDGEIIA
                     CSKGLHLYEYSWELAQLRTKKIIKLPQAASKVITSENITCR"
     gene            3873..4862
                     /locus_tag="VJA84_02745"
     CDS             3873..4862
                     /locus_tag="VJA84_02745"
                     /EC_number="1.8.4.11"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013718426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methionine sulfoxide reductase B/A
                     protein"
                     /protein_id="HLD41075.1"
                     /translation="MADRKNKESKTSGAVRGALSPEQYRIMRQNGTEPPFNNKYWDNK
                     QPGIYVDATSGEPLFSSSSKFDSGSGWPSFTSPVNQGNIIEKPDTSQGMTRIEVRSKS
                     SDSHLGHVFADGPQPTGLRYCVNSAALRFIPLEDMEKEGYGEYLYLFKKDKDMSAKNP
                     VQESKTETAVFGAGCFWGVEAAFGQLKGVVNTTAGFTGGTLKNPSYEDVCADKTGHAE
                     TVRIEYDPTQISYEELLDFFWSIHNPTTANRQGPDIGRQYRSAIFYLGPKQEKAARVS
                     RERLEKSKRFKSAIITEIAPAGEFYKAEDHHQRYYEKRRIKPTCNIPSDLIKE"
     gene            4913..>5066
                     /locus_tag="VJA84_02750"
     CDS             4913..>5066
                     /locus_tag="VJA84_02750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019034525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GIY-YIG nuclease family protein"
                     /protein_id="HLD41076.1"
                     /translation="MVKIKRSGRYFTYIVECSDKTYYTGYTNDLEKRIKRHNQGLASK
                     CTRARLP"
BASE COUNT         1502 a         1163 c         1284 g         1117 t
ORIGIN      
        1 gcgcctgctt aaacgttatt cccgtaatat tgtaatgatt tatgacgccg acgatgccgg
       61 gcagtccgcc acaatgagga gcctggagct gttggttgaa gaagatatga atgtaaaggt
      121 ggtccggctg gaaaaaggat atgacccgga cgcctacctt aggcattcgg gtgcgcggga
      181 gttcagggat ttaattcaag gggcgaaaga taccgtggat tatatgctgg ataccttaaa
      241 ggcaaaatac gatcctaagg acatatccca gaaggcaagg atagcttcag agatactgcc
      301 cctggtggct aaatttaaga atgaggtttt aaaatccgaa tatcttaaga aactctccca
      361 ggaactgggg gtaagcgaat cctcactggc cgcggaacta aagaaaacaa aggggaattc
      421 agcggggctt gagccggcta accgtcaggc aaagtcattc tgcgcggagt ctatgctggt
      481 aaagatacta ctggaagaaa acgaacttat tgagcactta cgggaaaaga tactccccag
      541 ggactttaaa gacaactgtt tgagccggat tttagcccgg atgtttgagt tgtcttacga
      601 aaaagaaaac atagagcctc aagtcctgct caaccatttt agcgagacag aagtttcaca
      661 aaccatctgc gaactggccg cttcggaaat gcctaaaatt accgataagc taaagctctt
      721 gaacgactgt gtcaataaaa taaaagagaa atcgcgcaaa tccaaacagc aggaactctg
      781 cgatcagatc cgccttgccc agcacagcaa ggacgaaaac cggatatacg aacttctaaa
      841 cgaatttcaa ttcctgacaa aaaaggggtg tgaagaagat ggcaaagaat aataatatcc
      901 ggcaggacct gaaaaagatc attgacctgg gcaagcaaaa ggggtttttg acttacgacg
      961 aactcaacga ccttctcccg gaagatatct cctcaatgga ggaaatagac aagatctttg
     1021 accttttagg aagcgaggat atccgcattg tcagcgcgat ccaggacaaa gataaagaaa
     1081 aggaagcggc aaccgatgaa tcccgtgaat atgccgagga aaagataatc cccgaagaca
     1141 ggtttcttcc cctggacgac ccggttaaga tgtatcttaa gcagatgggc tcaatccccc
     1201 tgcttagccg cgatgaagaa ataaccttag ccaagaatat tgaagccacg gaaaaagcgc
     1261 tttgcgaggc agtgtatctg accccctttt cccggaacga aaccctgaaa gtcattaacc
     1321 gcttatttga aaaagaagct aacctggaag acatcatcaa ggaagagata aaggtaaaga
     1381 aagaatccgt gcttaaacgt ttaggccgga ttgcccagcg cctgaaatac tcccgtaatc
     1441 ccaaaaataa tgtgggattg atatcttcct gcggtttcgt tatttctatc gccgaaaaaa
     1501 cgactaagag gtttatggag ttttcccggg aactggatga aattaaccgc aagctggaat
     1561 atgataagaa acagcgccgg aagaagagcc gcccggaact ggcccaaaga aaggcggcgg
     1621 ttattaagac cctctgcggt atgtccgcgg aagaaataaa agaacacacc aagataatcc
     1681 gcggccgctt cctgaaattc aaccgggcca aaaagaaact ggtagaggca aatctaaggc
     1741 tggtagtcag cattgccaaa aaatacacca accgcgggat gtccttcctg gatttgatcc
     1801 aggaaggaaa catcgggctg atgcgggcag tggagaaatt tgaatacaag cgcggctata
     1861 agttttccac ttatgccacc tggtggatac gccaggcaat tacccgttcc atagccgacc
     1921 aggccaggac tatcaggatt ccggtgcata tgaccgagat tatcaacaaa ataatgcggg
     1981 tctcccggat attcgtccag gaattcggcc gcgacccctt gcccgatgag atagccaagg
     2041 agatgcggat gtcccaggaa aaggtcaagg ccatcctcaa ggtagcccag gaacctattt
     2101 ccctgcagac ccctatcgga gacgaaggag acacccattt tggagatttc attgaggata
     2161 aacgggcagt ttctccggca aatgccacag tgcactcaat gcttaaagac catatgagtt
     2221 cggccttaga caccttgaat gaccgggaaa ggaaaatact gcttctgcgt ttcggcctgg
     2281 aagacggcac tgcccggacc ctggaggaag tgggcaagat atttaaggtt acccgggaaa
     2341 gggtgcgcca aatcgaggcc aaggccctga agaaattaag gcatcctacc cgcagccgca
     2401 aactgcgggc cttcttagac atggccatcg cgggtgaaag agaatattaa ttgttcgcgg
     2461 gagtagttca gtggtagaac aatagccttc caagctatat atgggggttc gattcccctc
     2521 tcccgctttt aaaatttaat ccttaaacgc cgatggaatc ctttcgcgag tacctatact
     2581 ttcaaactaa gaccaggcgc gcctacatca atatcacccc gcaggtggag gctctaatcg
     2641 cgaaaagccg gattaaagaa ggcctgtgct tagtcaacgc gatgcatatt accgccagcg
     2701 tctttattaa tgacgatgaa aacggtctgc ataaggattt tgacaaatgg ctggaacgtc
     2761 tggcccccca cgagccggtt tctaattacg agcataacct taccggtgaa gataatgccg
     2821 acgcccattt aaaaaggcag attatgggcc gggaggcggt ggtggcgatt accgacggta
     2881 aattggactt tggcccctgg gagcagatat tttacggcga gtttgacggg atgcgcaaaa
     2941 agcgcgtcct ggtaaagata ataggagaat gattatgcca gaagaattcc tgaaaccggt
     3001 tcacatagag gcctttgacc tggatgacgc ctggttccag gccctgtgcg cgataattga
     3061 aaaaggccat atctatacca tagaccgggg cagttaccag ggccagaaac ggctggaatt
     3121 tgactttgtg agcatccggg tcaagaaacc ttcccatcag ataattccgg tcatcccgga
     3181 agggatgtcc atacccgctc ccacggatat ggattatgtc cagggctatc taagctacct
     3241 gcttaccgga aataagaccg ctactgaaga ctatacctat ggcgaaagat tagtggatgc
     3301 caaggtccgc cttaaagagg ggggcctgat taaagagatg cctttagagg tgaaccaggt
     3361 agaagaagtt atccggatgt ataagaccca cggcttcggc actaatcaag ccacgatgga
     3421 aatcgggatg ccttcggata tcaagctgga tgacccgccc tgccttagaa taattgatac
     3481 ccgggtgcgc tacggtaaac tgcattttat cctctatttc cgctcctggg atctctgggg
     3541 ggggtttcct tccaacctgg gcggcctgca gttagttaaa cagcatatgg cctccgagat
     3601 aggggtggaa gacggggaaa tcattgcctg cagtaaaggc ctgcaccttt acgaatattc
     3661 ctgggaactg gcccagctgc gcaccaaaaa gatcatcaaa ctcccccaag ccgcgagcaa
     3721 agtaatcacc tctgaaaata tcacctgccg ttaggcagag agcggtgcaa atgcggataa
     3781 tcccaataat cccggatttt tctattgcga aatccgggat tattgtcttt ttatcgcttt
     3841 ttttgttcgc gcaggtaaag gagggcttct ctatggctga cagaaagaac aaagaaagca
     3901 agacctcggg agctgtccgc ggggcccttt ctccggaaca ataccggata atgcgccaaa
     3961 acggcacgga gcccccgttt aataataaat attgggataa caaacagccc gggatttatg
     4021 tggatgcgac cagtggagag ccgcttttta gctcatcctc caagtttgat tccggctccg
     4081 gctggccgag ctttaccagc ccggtcaatc agggaaatat cattgaaaag ccggatacca
     4141 gccagggaat gaccagaata gaggtgcgct ctaaaagcag cgattctcac ctggggcatg
     4201 tattcgcgga cggccctcaa cccacgggtt tgcgttactg cgtcaattcc gctgccttgc
     4261 gttttatccc gctggaggat atggagaaag aaggttatgg ggagtattta tatctgttta
     4321 agaaagacaa agatatgtcc gcgaaaaatc ctgttcaaga atcaaagacc gaaactgctg
     4381 tttttggcgc cgggtgtttt tggggagtag aggcggcctt tgggcagtta aaaggcgtag
     4441 ttaacactac tgccggattt acgggaggga cgctaaaaaa tccctcctac gaagatgtct
     4501 gcgcggataa aaccggtcat gccgagacag taagaataga atacgatccc acccaaattt
     4561 cttatgaaga actgctggat ttcttttgga gcatccataa cccgactacc gctaaccgtc
     4621 agggtccgga tataggcagg cagtaccgct ccgcgatttt ttatcttggc ccgaaacaag
     4681 aaaaggccgc ccgcgtttcc agggaaagat tagaaaagtc caaacggttt aaaagcgcga
     4741 ttataaccga gattgccccg gcaggcgaat tttacaaagc cgaagaccac caccaacgtt
     4801 attacgaaaa gcggagaata aagccaacct gcaatatccc cagcgaccta atcaaagaat
     4861 agaaaatcgg agaaaagggg tcaggccttg aaatgtgaaa tgatttgctt gtatggtaaa
     4921 aattaagcgt tctggcaggt attttactta tattgttgaa tgctctgata agacatatta
     4981 tactgggtat acgaatgatt tggagaagcg aatcaagcgg cataatcagg ggctggcttc
     5041 aaaatgtacc agagcgcggc ttccgg
//
LOCUS       DATDUB010000138         2837 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1279657, whole genome shotgun sequence.
ACCESSION   DATDUB010000138 DATDUB010000000
VERSION     DATDUB010000138.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2837)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2837)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2837
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1279657"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(63..506)
                     /locus_tag="VJA84_02755"
     CDS             complement(63..506)
                     /locus_tag="VJA84_02755"
                     /inference="COORDINATES: protein motif:HMM:NF012549.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit C"
                     /protein_id="HLD41077.1"
                     /translation="MPESITSIKAKFPSISQEANTQYLIATGYEIKGICRFLKEDLGF
                     EQLACISAIDYKDRLALIYNIFSYKTKERIDLKVYLDKTAPSVESVSLVYPAANWHER
                     EAFDMMGINFNGHPDLRRILLPEDWQGHPLRKDFIREGFVPLPPI"
     gene            complement(508..1026)
                     /locus_tag="VJA84_02760"
     CDS             complement(508..1026)
                     /locus_tag="VJA84_02760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020527867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit B family
                     protein"
                     /protein_id="HLD41078.1"
                     /translation="MALIHKLPLITEKIPGGQIILTSADFVLNWAKESSLWPMSFGLA
                     CCAIEMMATGAARYDIDRFGAGVFRATPRQCDVMIVAGTVNQKMSKRLRLLYDQMPEP
                     KYVLAMGSCAISGGPYYYDSYNVVKGVDTVVPVDVHIPGCPPRPEALLFGLMKLQEKI
                     RKSSLKDELVKK"
     gene            complement(1017..1376)
                     /locus_tag="VJA84_02765"
     CDS             complement(1017..1376)
                     /locus_tag="VJA84_02765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012192499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit A"
                     /protein_id="HLD41079.1"
                     /translation="MLTHSYSYVLLFLAAGTVFVLGSFVTSWFLRPNNPTKAKISAYE
                     CGESTTGTSFVQYNVRYYLFALLFVVFDVEAAFLIPWAVVFKEFGLFGFIEAVIFIAI
                     LLFGLLYAWKKKALEWL"
     gene            complement(1481..1930)
                     /locus_tag="VJA84_02770"
     CDS             complement(1481..1930)
                     /locus_tag="VJA84_02770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41080.1"
                     /translation="MSIHKLHKKSCRRKYHNIANRFQRKILTLVFFSTVVPMVIAVVC
                     LYYLILNAVADEMAIPEAIGYTLIPAAQKSAVIATIGFLVSVLIIWAWALRVSHQLAG
                     PLERLCRDLDDRICGRKKGYVYFRKKDYLAILAGRINSLLDKAHLHR"
     gene            complement(1944..2705)
                     /locus_tag="VJA84_02775"
     CDS             complement(1944..2705)
                     /locus_tag="VJA84_02775"
                     /inference="COORDINATES: protein motif:HMM:NF022694.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3047 domain-containing protein"
                     /protein_id="HLD41081.1"
                     /translation="MFWVFVAMAFVLAGALYGSSYLKRFVFDRPDALSEWKEKVFQGR
                     VLYEVRPDPQKGYLLARSNQASSGLFYKISFSPKKNPYISWSWKVAQFPAKAAEAKSS
                     KRSWIERDDYAVRVYVIFPALIFTNTKCLEYVWAEDIPAGTVLTSPFFNNIKLIVLES
                     GAKNLGQWVLEERNIFNDYKLAFKREPSVNAGAIALMTDADNTQSRAEGCYADIKVGY
                     PKAILTYPQYKKAESPKPKEKKEPWREYLKRLKFW"
BASE COUNT          748 a          733 c          665 g          691 t
ORIGIN      
        1 ccccgtgggt tgagggatgc tgtggtccaa aactgacttc aaaggcctcg gtctgtatca
       61 tattatatag gaggcagcgg gacaaaacct tcccggataa aatctttcct taaagggtgc
      121 ccttgccaat cctccggtaa aagtatcctg cgcaggtcag gatggccgtt aaaattaatc
      181 cccatcatat caaaggcctc ccgctcatgc caattggccg ccggataaac caagctgacg
      241 ctttccaccg aaggagcagt cttatctaag tataccttca ggtcaatcct ttctttcgtt
      301 ttataggaaa agatattata aattaaggcc aggcggtctt tataatctat cgccgaaatg
      361 caggccaact gctcaaaacc cagatcttcc tttaaaaacc ggcaaatccc ctttatctca
      421 taccctgttg ctatcaggta ttgggtattg gcctcttggc tgattgaagg gaatttagct
      481 tttatggagg ttattgattc aggcatatta tttcttgacc aattcgtctt tcaggctgga
      541 ttttctgatc ttttcctgca gtttcatcag gccaaagagc agggcctccg gcctgggcgg
      601 acagcccggg atatgaacgt ctaccggaac aaccgtatcc actcccttaa ccacattata
      661 gctgtcgtaa taatacggcc ccccggagat ggcgcaactg cccatagcca ggacatactt
      721 gggctccggc atctggtcgt ataaaagcct caagcgtttg gacatcttct ggtttaccgt
      781 gccggccacg atcatcacat cgcactgccg gggggtggcc cggaagaccc cggccccaaa
      841 gcggtcaata tcatagcggg cggcaccggt agccatcatc tcaatggcgc agcaggccag
      901 gccaaagctc atcggccaga ggctggattc cttggcccag ttcaggacaa aatccgcgct
      961 ggtcaggatg atctggccgc cggggatttt ttcggtaatt aatgggagtt tatgaattaa
     1021 agccattcca gcgccttctt tttccaggca tagagcaggc caaaaagcag gatggcgata
     1081 aagataaccg cctcaataaa gccaaaaagc ccgaattcct taaagaccac cgcccatggg
     1141 atcaaaaagg ccgcctccac atcaaagacc acaaacagaa gggcaaacag atagtagcgg
     1201 acattatact ggacaaaact ggtgccggtg gtagactccc cgcactcata ggcagaaatc
     1261 ttcgctttag tcggattatt cggacgaaga aaccaggagg taacaaacga ccccaggaca
     1321 aagaccgtcc ccgcggccag aaacaataag acatagctgt aactatgggt caacattcgg
     1381 gtttcactcc ttgattaaaa tggcgcgaaa gcggagaaac ggtataagtc tatcaccgcg
     1441 gacggaagcc gtcaagtgaa aattttcacg agaggtggga ttaacgatgc aggtgggcct
     1501 tgtctaataa ggagtttatc ctgccggcca ggatggccag gtaatccttc ttgcggaaat
     1561 aaacatagcc tttcttccgg ccgcagatcc tgtcatccaa atcccggcat agtcgttcca
     1621 atggcccggc caattgatgg gaaaccctta aggcccaggc ccagattatc agcaccgaaa
     1681 ccaaaaaacc tattgtcgcg attaccgctg atttctgggc cgcgggtata agagtgtagc
     1741 cgattgcctc ggggatagcc atctcatcag ctacagcgtt aagaatcaga taatacaggc
     1801 agaccaccgc tatcaccatc ggcactaccg tggagaaaaa gaccagggtc aggatcttcc
     1861 tctggaaacg gttggcaatg ttatggtatt tgcgccggca ggacttcttg tgcagtttgt
     1921 ggatagacat ctctcacctc ctcttaccaa aactttagac gctttaaata ttcccgccaa
     1981 ggctcttttt tctccttggg cttcgggctt tccgctttct tatactgggg ataagtaagg
     2041 atggccttag ggtatccgac cttgatatcc gcgtagcatc cctcggcccg gctttgggtg
     2101 ttgtccgcgt cggtcatcag ggcaatcgcc cccgcgttta ccgaaggctc tctcttaaag
     2161 gccagtttat aatcattaaa tatgttgcgt tcttctaaaa cccattggcc aaggttttta
     2221 gccccggatt ctaagactat cagcttgata ttattaaaaa atgggctggt caataccgtg
     2281 cctgccggga tatcctcggc ccagacatat tctaagcatt tggtattggt aaaaatgagg
     2341 gcggggaaaa tcacatacac ccggaccgcg tagtcgtcgc gctctatcca ggaccttttg
     2401 gaggatttag cctctgcggc cttggccggg aattgagcga ccttccaact ccagctgata
     2461 taggggtttt tcttagggct aaaactaatc ttgtagaata atccggaaga ggcctgatta
     2521 ctgcgggcta agagataacc tttctgcgga tcaggcctga cttcataaag cacccggcct
     2581 tggaacacct tttctttcca ttctgaaagg gcatccgggc ggtcaaagac aaagcgctta
     2641 agatagcttg agccgtaaag cgccccggcc aaaacaaagg ccatggcgac aaatacccaa
     2701 aacacaaccg cccgcctatt caatactaaa gtttccaatg acagaaaaac agatgctcac
     2761 acttatcctc cattttagta ttactaatca ggagcatatt cctctttagt tatattgtca
     2821 agccttttac ggctaga
//
LOCUS       DATDUB010000139         5042 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_97061, whole genome shotgun sequence.
ACCESSION   DATDUB010000139 DATDUB010000000
VERSION     DATDUB010000139.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 5042)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5042)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5042
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_97061"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(374..1270)
                     /locus_tag="VJA84_02780"
     CDS             complement(374..1270)
                     /locus_tag="VJA84_02780"
                     /inference="COORDINATES: protein motif:HMM:NF012694.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HLD41082.1"
                     /translation="MFLALIITILVFLSVYTLVYNLYLNRQMHLSLNTAKTKSLSAEQ
                     SKEELPKEKISLFRHLLRPFGFIVKLKVARGLANRSVPSKLVKAGHPLTIVEFIIFKI
                     FSIFALAIAGTIMLNTDQIVYLIPLMVVGFIIPDIWLNLKIKRRQTEIRRDLPMVIDL
                     LNLCVNSGLDFMLAVNRVVRDFKKCPLTDELSEVWRETRMGASRRDALQHLSKRINIV
                     EMSSFVRTLLQADRMGSPMGEALKIQSEEIRLRRYLQGEEMALKAPIKLLLPLILFIL
                     PAVLVIVAGPIFLQFMRGGFKF"
     gene            complement(1283..2131)
                     /locus_tag="VJA84_02785"
     CDS             complement(1283..2131)
                     /locus_tag="VJA84_02785"
                     /inference="COORDINATES: protein motif:HMM:NF012694.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HLD41083.1"
                     /translation="MLSFLIPVFVFLAFVSAGWTVYPAVEGYFLAWQRKRVERITPKL
                     DRIFITIPYRKLLLLDVASPLAVGILAYILTQTFWIAIAAGFAGLVIPNFIVKQLEAS
                     RKIKFATQLVDGLMLLSGSLKAGLSLLQAFEALVEEMPVPISQEFSLVVRENRMGIPL
                     EECLYKLRQRMECEELDMIVTAVLVARETGGDLTVIFSNLVMTIRERNRLLGRVKALC
                     VQGKLQGRIMMVIPVIFAYGLYKINPSIFEVLLNDPQGRALLIYAAISEVIGAIMITR
                     FSKIEI"
     gene            complement(2135..2359)
                     /locus_tag="VJA84_02790"
     CDS             complement(2135..2359)
                     /locus_tag="VJA84_02790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41084.1"
                     /translation="MRKRLPISNGKSRAIGSLAIEYAALIAIAAAVLLAMSAYFKGAL
                     CGRYRDTGDSFGYGRQYNPYDPQKTIVDEK"
     gene            complement(2322..2765)
                     /locus_tag="VJA84_02795"
     CDS             complement(2322..2765)
                     /locus_tag="VJA84_02795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41085.1"
                     /translation="MKNKINEASPLKGIVIFLIIIGIIFLFKARHNEIDIARAALTGL
                     IQSNQSVAGLLKWDKLKAVGADISTTYLAYKTDKERNDYKKYFIRGFSAGFKEVKGNY
                     KQFINWRFHEKSAQKTVVAVDYRDKILLFTLPKNEKKITDIQWKE"
     gene            complement(2762..>5042)
                     /locus_tag="VJA84_02800"
     CDS             complement(2762..>5042)
                     /locus_tag="VJA84_02800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41086.1"
                     /translation="IKSINGLLEYDRYRESVFYQALSQTIDDSNKTDSDYVRLWYDDD
                     GDGELEEGENRHCRSKDSGNCDPWDSDGDGDKKEAVPYFQYWWDLRVRALKSIIPELE
                     ALTYLFLWGEASEGYNTAWYREPYNPSLSKPNECEHTYEHSFQNYAVTQYSETYACTA
                     DTFGGSSVSSSLCSGYYSADGGGYAYNPVWSSGLLYRTDVGTDSTEWKRYIKCPSEYS
                     AYYGEGTSCKTNMTVNSAETDKILVPVVDGVVIQVGKALEYKGIKVSFYEPGLTTRSD
                     YDGDEKDGKEGCPKKKDKDGNVVKDKNGKTVYECDGEDYIDEAEVVVATLIDFKEAVK
                     ALKAQSIDRLTSTWQTWVRTFYDMGVKERDEETCEITYKKESKGNFSDQFDIIINGED
                     LDGNGETGEEDVDVPVDSDNDGDTDSYEVKDEFKGLKAWKKEIKEGKKKLKNKINACG
                     DIGYLDDDGACNDYCYGRYGDGSGCTTCYKDVPCILDSGGITTDSDADDEFEEALTAI
                     DGLISNLESFQKSAKNYYNDMDAVYEKMNEKYGADFDFGGINPVTYRWTDSRCMGGKD
                     FEEDAEGNPDMTKICGQDTGDNDGDGDKDEPDPACPRMDTCDQDADGITEELYKCHSI
                     TVEVSQFKVPWVDNEESGGFLSKKSCAVLTDYCYNPNNDSSWKCENSYNPLWVKITRR
                     DLGNQMVGSIAKWNPKGDGGDDVVCSKDSSDDADISQACKVWKEANPELKISRSATPY
                     FSYNKVGLASAGKKKAESK"
BASE COUNT         1308 a         1273 c         1053 g         1408 t
ORIGIN      
        1 cctcttcttc atatatcctg ccgaattctt cctttaacat ttcctgtctg gcgtgcgaag
       61 aataaataac cctatcattc ttaaaactct tttggattgc cggtaatatg ttcatcttaa
      121 gttctattta taacatacat cctcttgagt tgcaaataaa aaaagcgcct tctcttcctc
      181 cgagagagaa ggcgctactt ccaccgatac gaatgcctgc cccctgccta ccggcaggca
      241 gggggatttt tcaactcacc aaactaattt tagacctttc cttgagtaga cagaaaaact
      301 tatcttgaat taagtaatat gtccccggaa ttgcccggaa ttgccaagct aattaactaa
      361 tatttctata atcttaaaac ttaaagccgc cacgcataaa ttggaggaat atcgggccgg
      421 caacgatgac taagactgcc ggaaggataa atagaataag aggaagcagg agcttaatcg
      481 gagccttgag agccatttct tctccctgaa ggtaacggcg caggcggatt tcctcggatt
      541 gaatctttag ggcctcaccc atcggcgaac ccatccggtc ggcctggagc agggtgcgca
      601 caaaactgga catttccacg atatttatcc tctttgaaag atgctgaagg gcatcccggc
      661 gggaggcgcc catgcgggtt tcccgccaga cctcggaaag ctcatcggta agcgggcatt
      721 tcttgaagtc ccggaccacc cggtttaccg ccagcataaa atccaggccg gaattcacgc
      781 aaagatttaa gaggtctatg accatcggca gatcccgtct aatctcggtc tggcggcgct
      841 taatcttaag attaagccag atatccggga taataaaacc gaccaccatc agcggaatca
      901 aatagacaat ctggtcagta ttcaacataa tagtcccggc tatagccagg gcgaatatag
      961 aaaaaatctt aaaaattata aactccacga tggtgagggg atgtccggcc ttgactaatt
     1021 tagaagggac cgagcggtta gccaggccgc gggcaacttt aagtttaact ataaagccaa
     1081 acggcctcaa caaatgccgg aacaggctga ttttctcttt aggcagttct tctttggatt
     1141 gctccgcgga caagctttta gtcttagcag tgtttagaga caaatgcatc tgccggttga
     1201 ggtatagatt atacaccaag gtataaacgc ttaagaaaac cagaatcgtt attattaagg
     1261 ctaaaaacat acctctaacc tcctaaatct caatcttgct gaaccgggta atcataattg
     1321 ccccgataac ctcggaaata gccgcgtata ttaaaagcgc ccttccttga gggtcattta
     1381 aaagcacctc aaaaatggaa ggatttatct tataaaggcc ataggcaaag ataaccggga
     1441 taaccatcat aatccttccc tggagcttgc cctggacgca taaggccttt accctgccta
     1501 aaaggcggtt acgctcgcgg atagtcatta ccagattaga aaatatcacg gtcagatcgc
     1561 ctccggtttc ccgggctacc agcaccgcgg ttacgatcat atctaattct tcacactcca
     1621 tccgctggcg aagtttatat agacattcct ccaggggaat gcccatacgg ttttcccgca
     1681 ccaccaaact aaattcctgg gaaatcggca cgggcatctc ctcaactaag gcctcaaagg
     1741 cttggagcaa agaaagcccg gccttgagcg agccggataa gagcattagc ccgtctacta
     1801 attgggtggc gaatttaatt ttacgagagg cctccagctg tttaactata aaattgggaa
     1861 taaccaggcc ggcgaatccg gcggcaatgg caatccaaaa agtctgagtt aaaatataag
     1921 ctaatattcc tactgccagg ggactggcta catctaagag caaaagctta cggtagggga
     1981 tagtaataaa tatccggtct aacttagggg tgattcgctc tacccgcttt ctctgccagg
     2041 ccaggaaata tccctccacc gccggataaa ccgtccaacc ggcgcttaca aaagccagaa
     2101 aaacaaatac agggattaga aaggagagca tgttttattt ttcatctaca atagtttttt
     2161 gggggtcata tgggttatat tgccggccgt agccaaagct gtcgccggta tcgcggtaac
     2221 ggccacaaag agcgcctttg aaataggcgg acattgccag gagcaccgcg gcggctatgg
     2281 caattaaggc cgcgtattct atggccagag agcctatagc cctactcttt ccattggata
     2341 tcggtaatct ttttctcatt cttaggcagg gtgaataaaa gtattttatc acgataatcc
     2401 acggccacaa ctgttttttg agcgcttttc tcatgaaagc gccagtttat gaattgttta
     2461 taattaccct ttacctcttt aaatccggcg gagaaacccc gaataaagta ttttttatag
     2521 tcgtttcttt ctttatcagt tttataggcc agataggtag tgctgatatc cgcgcctacg
     2581 gccttaagct tatcccattt cagcaggccg gctaccgact gattagattg aatcaggccg
     2641 gttaaggccg cccgggctat atctatctcg ttatggcggg ccttaaatag aaagattata
     2701 ccgataatta ttagaaatat aactattcct tttaacgggg aagcttcatt gattttgttt
     2761 ttcatttact ttccgccttt ttcttgcccg cgctggccag gcctacttta ttatagctaa
     2821 aataaggtgt agcgctacga gagattttta gctccggatt ggcttctttc cacactttac
     2881 aggcctggct gatatccgcg tcgtcagaag aatctttaga acagacaaca tcatcccctc
     2941 cgtcaccttt agggttccat ttggcaatgc ttcccaccat ttgattaccc aagtctctcc
     3001 tggtaatctt gacccagagt ggattatagc tgttttcaca tttccagctg gaatcattat
     3061 tcggattata gcagtaatcg gttaacaccg cgcaggattt tttggaaaga aaaccgccgc
     3121 tttcctcgtt atccacccaa ggcaccttaa actggcttac ctcaacggta atgctgtggc
     3181 atttatacag ctcctcggta attccgtcag catcctggtc gcaggtatcc atacgcggac
     3241 aggcagggtc aggctcgtcc ttatcgccgt ctccatcgtt atcgcctgta tcctggccgc
     3301 aaatcttagt catgtccggg ttgccttcgg cgtcttcttc aaaatccttg ccgcccatac
     3361 agcgggaatc cgtccagcgg taggtaaccg gatttatccc gccaaagtca aagtccgcgc
     3421 cgtatttttc gttcatcttt tcatagaccg cgtccatgtc gttgtagtaa ttcttggctg
     3481 atttttgaaa actttccaga ttagaaataa gcccgtcaat tgcggtcaga gcctcttcaa
     3541 actcatcatc ggcatcgctg tcagtggtaa tgcctccgct atccaaaatg cagggcacat
     3601 ctttataaca ggtagtgcac ccggaaccgt cgccataacg cccatagcaa taatcattac
     3661 aggcgccatc gtcgtctaaa taaccaatat cgccgcaggc gtttatctta ttttttaatt
     3721 tcttcttgcc ttcttttatc tccttcttcc aagccttgag gcccttaaat tcgtctttca
     3781 cttcataaga gtcggtatcc ccatcgttat cgctatccac aggcacatcc acatcctctt
     3841 caccggtttc accgttacca tctagatcct caccgttgat aataatatcg aactgatcgg
     3901 aaaagttgcc tttgctttct tttttatagg ttatttcgca ggtttcctca tcgcgctctt
     3961 taacccccat atcatagaat gtccttaccc aggtctgcca ggtggaggtg agccggtcaa
     4021 tgctttgggc cttcaaggct tttaccgcct ctttgaaatc tattagggtg gctaccacca
     4081 cctcggcttc atcaatataa tcttcaccat cacattcata cacggtcttt ccgtttttat
     4141 ccttcaccac attaccatct ttatcctttt tcttggggca tccttccttc ccatcttttt
     4201 catctccgtc atagtcagat ctggtagtaa ggccgggttc ataaaaagaa acctttatgc
     4261 ctttatactc taaggccttg cctacctgga ttacgactcc gtctactacc ggaactaata
     4321 ttttgtctgt ttcagcagag ttaacggtca tatttgtttt acagctggtg ccttctccgt
     4381 aataagcgct atattccgag ggacacttaa tatatctctt ccattccgta ctatctgttc
     4441 caacgtcggt gcggtaaagc aggcccgatg accaaaccgg attataggcg tatcctccgc
     4501 catcagcgga ataatatcca gaacaaagag aactgcttac agacgaacca ccaaaagtat
     4561 cggcggtaca ggcataggtt tcggaatatt gagttacagc ataattttgg aaactatgtt
     4621 cataggtgtg ttcacactca tttggtttgc ttaaggaagg gttgtagggc tcccgatacc
     4681 acgcggtgtt gtatccctcg cttgcttctc cccagagaaa aagataggtt aaggcctcta
     4741 actccgggat aatggatttt agggccctga cccggagatc ccaccagtat tgaaaataag
     4801 gcactgcctc tttcttgtcc ccatcgccgt cagaatccca ggggtcgcaa ttgccgctgt
     4861 ccttagagcg gcaatgcctg ttttcgcctt cttccagttc accgtcgccg tcatcatcat
     4921 accaaagccg gacataatcc gaatccgttt tattggagtc gtctatagtc tgggataagg
     4981 cctggtaaaa aacactctcc cggtagcggt cgtattctaa gaggccgttg atggatttga
     5041 tg
//
LOCUS       DATDUB010000140         7139 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_2262355, whole genome shotgun sequence.
ACCESSION   DATDUB010000140 DATDUB010000000
VERSION     DATDUB010000140.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 7139)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7139)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7139
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2262355"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..395
                     /locus_tag="VJA84_02805"
     CDS             <1..395
                     /locus_tag="VJA84_02805"
                     /inference="COORDINATES: protein motif:HMM:NF012428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HLD41087.1"
                     /translation="TLTAGTHASTFGGSPLICKASLAVFKAIHKEKLLKNAIEMGGYL
                     KEKLSALAQKYAIINEIRGLGLMLGIELTIPGKQIVEECLKDGLLINCTHDKVLRLMP
                     ALNVTKKQADKAVGILDKVVERVTRAPV"
     gene            426..1352
                     /gene="argF"
                     /locus_tag="VJA84_02810"
     CDS             426..1352
                     /gene="argF"
                     /locus_tag="VJA84_02810"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010477925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004585 - ornithine carbamoyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0042450 - arginine biosynthetic process via
                     ornithine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HLD41088.1"
                     /translation="MKKDLISIKDLSRQEIEEIFSLAKDLKKNKEKYAQSLKGKTLAL
                     IFQKPSNRTRVSFAVGIFELGGQSIYLGPQEISLGKREAIKDVAMTLSRYVSAIVLRT
                     FEHKNVIELAKYSAVPVINGLSDLSHPCQGLSDIFTIKEKFGSFKGLNLAYVGDGNNV
                     THSLLYCASKVGLNMNCASPDKFDPDPGVVKEAKKFASLSGARIQLFRQASAACKDAD
                     VIYTDVWTSMGQEKEAQKRRKIFKCFQVNKKLVSSAKKNCAIMHCLPAHRGEEITDEV
                     IDSENSLVFDQAENRLHVQKAVLLKLLEKVGL"
     gene            1385..2560
                     /locus_tag="VJA84_02815"
     CDS             1385..2560
                     /locus_tag="VJA84_02815"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012635239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004055 - argininosuccinate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HLD41089.1"
                     /translation="MKKVVLAYSGGLDTSCAVQWLKDKGYEVICFIADLGQGEDFEAI
                     EKRALVGGASKVYIKDLRQEFVEDFIFPSLKANAIYEGKYLLATALGRPLIAKYLVEV
                     AHKEKAQGIAHGCTGKGNDQVRFEVTARILDPKLEIIAPVRIWEFKSREEEIEYALAK
                     KIPIDVTKKKSYSLDKNLWGVSIESGVLEDPWVSPPEDCYQWTNSALEAPDKPGYVEI
                     EFEKGVPKKINGKVYDALKLIDQLCHLGSEHGIGRSDMIENRLVGIKSREIYEAPAGT
                     ILHIAHRELEALVLDRETAHYKETVGLKYAELIYYGLWYSKLRTALDKFIEETQKTVS
                     GTVRLKLYKGNCSVAGRKSPHSLYREELATYTAKDKFDQKLSEGFIRIFGMPFESQK"
     gene            2570..3874
                     /gene="argH"
                     /locus_tag="VJA84_02820"
     CDS             2570..3874
                     /gene="argH"
                     /locus_tag="VJA84_02820"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR00838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004056 - argininosuccinate lyase activity
                     [Evidence IEA];
                     GO_process: GO:0042450 - arginine biosynthetic process via
                     ornithine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HLD41090.1"
                     /translation="MAKKLWGGRFKKETDKDFFEFQKSIQYDYKLALYDLRHSLIHIS
                     ALKKSGILTNEEWQKLNSALSLIEKEIKENKFKPNLQSEDIHTEIQNRVEKKVGKLAQ
                     KLHTLRSRNDQIAFDEKNYCGIEACNIADYLSEVIAGLEYLSARYKNSQIPGYTHTRR
                     AQKVAFADYLGAFEAMCARDKERLTAFSKKLIAYVGSGAFKGTSLSREYAAAIKEYLK
                     SDSSRYIALVKNAPDNVSDRDFILEFLGILSILQMHLSRFAEDMILFSTQEFNFVDLP
                     EEFCAGSSLMPHKKNPDFLELVRGYTGMIYGNLMALLTIMKGLPLTYNRDMQLDKEPL
                     FSSVDIIKDELKILARFIKGIKLNEKVIGKALEDESLYAVDLAEYLVKEKKVPFAQAH
                     EIIGKMIRYAEDNKCKIKDMEDGLLNKFSTHLNQKIIKGVFR"
     gene            3892..5157
                     /gene="lysA"
                     /locus_tag="VJA84_02825"
     CDS             3892..5157
                     /gene="lysA"
                     /locus_tag="VJA84_02825"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013907736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008836 - diaminopimelate decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HLD41091.1"
                     /translation="MHDFKYKNKELYCEGLKIANIAKKVSTPFYLYSYNTLLGHFHKL
                     HKAFRTLKPLICYSMKANSNLSLCRALVKAGSGLDIVSGGELYKALLVGCHPKRIVYA
                     SVGKTEEEIRQAIAKQILFFNVESLPELELINKVAGDLGVIASVALRINPDVEPKTHS
                     YITTGKLTNKFGIDFDTAYTILRRKDRLGHLRFNGLHIHIGSQIIQAQPYLQAIKKIL
                     KFIQKLKKEAIQIEYLNIGGGLGIIYNKEKPQTAEEFAQKVIPLLKDAGLKIILEPGR
                     FIVGNAGILVTKILYIKKTPLKNFVITDAGMNDLIRPSLYGAYHDILPLRNMKDEGRK
                     AIKADVVGPICESGDFFAKDRYLKNITEGDLLAIMSAGAYGFSMASNYNCRLRPAEVL
                     VNGNRFYVARKRESYLDLARKDVIPEFLK"
     gene            5154..6005
                     /gene="dapF"
                     /locus_tag="VJA84_02830"
     CDS             5154..6005
                     /gene="dapF"
                     /locus_tag="VJA84_02830"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013638051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008837 - diaminopimelate epimerase
                     activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HLD41092.1"
                     /translation="MTKIAFTKIVASGNDFVIIEKDNILSFVLRPSSLVKSICDRKFG
                     AGADGALLLEESKKADIRMRIFNADGSEADMCGNGARSAALYHSLRSPVYSLRSMLKI
                     ETKAGIIEARVLKDTVKIKLTDPKEYQKKIPMVIHGRKLKVNFINTGVPHTIVFVQAI
                     EQIDVTNIGREIRYHKYFSPAGTNVNFVEMVNNNTIKARTYERGVEDETLACGTGAAA
                     SAIVFALQPACLVGRQAGSSLCKKINVITQGGETLKVYFKKEADRISDVWLEGRAKIV
                     YKGEFYV"
     gene            5998..6873
                     /gene="dapA"
                     /locus_tag="VJA84_02835"
     CDS             5998..6873
                     /gene="dapA"
                     /locus_tag="VJA84_02835"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015839326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008840 - 4-hydroxy-tetrahydrodipicolinate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HLD41093.1"
                     /translation="MFKGSMTAIVTPFKDGKIDEEKLSELVEFQIKNKTSALVPCGTT
                     GESATLSWAEHERVIEIVIEASGKRVPVIAGTGSNSTEEAVMLTKQAAKSGSDATLHV
                     SPYYNRPTQKGLYLHFKAVSECADIPVILYNIASRTGVNIEPETIAKLANDCKNIVGV
                     KEASGSLEQMSRIKALCPRDFALISGDDALTLPVLAIGGTGVISVVANIAPKDTANMI
                     EAFEKGNLKKAQELHYKILPLIKAMFIETNPIPVKTAMGLMKLCQPDLRLPMCEMLPE
                     NQEKLKKALKDYGLL"
     gene            6923..>7139
                     /locus_tag="VJA84_02840"
     CDS             6923..>7139
                     /locus_tag="VJA84_02840"
                     /inference="COORDINATES: protein motif:HMM:NF013293.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HLD41094.1"
                     /translation="MIKLGVLGAGGRMGRRIIELALNDKELEVVLALERKGHHLIGKN
                     IDKVKISSSPDGIFLTDALIDFTVPEAS"
BASE COUNT         2092 a         1451 c         1818 g         1778 t
ORIGIN      
        1 ataccctgac tgccggaaca catgcctcta cttttggggg cagtccgctt atctgtaagg
       61 cctctttggc ggtatttaag gctattcata aagaaaaact gcttaagaat gccatagaga
      121 tgggcggata tttaaaagaa aaattatccg ccttagccca aaaatatgct attataaacg
      181 agataagagg gctgggcttg atgctgggca ttgaattaac tatacccggc aaacagattg
      241 ttgaagaatg ccttaaagac ggactgttga ttaactgcac ccacgataaa gtcttgcggc
      301 ttatgccggc ccttaatgtt accaagaaac aggcggacaa agcagtgggg atattggata
      361 aggtagtaga aagggtaacc agagcgccag tgtagggaca agtcccctgt gcctgtccaa
      421 aatagatgaa aaaggattta atttctataa aagacctaag ccggcaagag atagaggaaa
      481 tattttccct ggccaaagac ctgaagaaga acaaggaaaa atatgcccaa agcctaaaag
      541 gcaagaccct ggccttgatt tttcagaagc cctctaaccg gaccagggtt tctttcgcgg
      601 taggcatctt tgaattgggc gggcagagta tttaccttgg cccgcaggag ataagcctgg
      661 gtaaaagaga ggccattaaa gatgtggcga tgaccctttc ccgctatgtc tcggctatag
      721 tcttacgcac ctttgagcat aagaatgtga ttgagctggc caaatattcc gcggtcccgg
      781 taataaacgg gctttccgac ctttctcatc cctgccaggg tttgagcgat atctttacca
      841 taaaagaaaa atttggttcc tttaaagggc tgaacctggc ctatgtcgga gacggaaata
      901 acgttaccca ctcactgctt tattgcgcct ctaaggtcgg cttgaatatg aattgcgcct
      961 cccctgataa gtttgatccg gaccccggag ttgtcaaaga ggccaagaag tttgcttctt
     1021 tatccggggc caggatacaa ttattccgtc aggcctccgc ggcctgtaag gacgcggatg
     1081 tgatttatac cgacgtctgg accagtatgg gccaggaaaa agaggcccaa aagcgcagga
     1141 aaatatttaa gtgttttcag gtgaataaaa aactggtatc atcagctaaa aagaattgcg
     1201 cgataatgca ctgcctgccg gcgcaccggg gcgaggaaat caccgatgaa gtgattgact
     1261 ctgaaaactc ccttgtcttt gaccaggcgg aaaaccgcct gcatgtgcag aaggcggtat
     1321 tattaaagtt attagagaag gtaggtttgt agggacaggc ccctgtgcct gtccgaggag
     1381 gggtatgaaa aaagttgtct tggcgtattc cggggggtta gatacctctt gcgcggtcca
     1441 gtggcttaag gataaggggt atgaggttat ttgttttatc gctgacctgg gccagggcga
     1501 ggattttgag gcaattgaga aaagggcgct ggtaggcggg gcctctaagg tttatatcaa
     1561 agacctgcgc caggagttcg tggaggactt tatcttccct tcgcttaagg caaacgcgat
     1621 atatgaagga aagtatcttc tggctacggc attaggcagg ccgttgattg ccaagtatct
     1681 ggttgaggtg gcccataaag agaaggctca agggattgcc catggttgca ctggtaaggg
     1741 caatgaccag gtgcgttttg aggttaccgc cagaatcctt gaccctaaat tggaaattat
     1801 cgcgccggta aggatatggg aattcaagtc ccgggaagaa gaaattgaat acgccctggc
     1861 caaaaagata ccgattgatg taaccaagaa aaaatcttac agcttggaca agaatttatg
     1921 gggggtttcc atagaatccg gggtcttaga agacccctgg gtcagcccgc cggaggattg
     1981 ttatcagtgg actaattccg ctctggaagc cccggacaag ccgggatatg tggaaataga
     2041 atttgaaaag ggcgtgccta aaaagataaa cggcaaggtt tatgacgccc ttaaacttat
     2101 tgatcagctt tgccatctcg gctcggaaca cggcataggc agaagcgata tgattgaaaa
     2161 caggctggtc ggcattaagt cgcgggagat ttacgaagcc cctgccggga ctattttgca
     2221 tatcgcgcac agggaattag aggctttagt tttagaccgg gagaccgccc attacaagga
     2281 aaccgtgggc cttaaatacg cggagcttat ttattacggc ctgtggtatt ccaaattaag
     2341 gacagccctg gataaattta ttgaagaaac tcaaaaaaca gtcagcggca cagtcaggct
     2401 taagctgtat aagggcaatt gcagcgtggc ggggcgaaaa tcaccgcatt cgctttaccg
     2461 ggaagaatta gccacctata ccgcgaaaga taagtttgac cagaaacttt ccgaaggatt
     2521 catcaggatt ttcgggatgc cgtttgaaag tcaaaaatag aaggaaaaaa tggccaagaa
     2581 attgtggggg gggaggttta aaaaagaaac cgataaagac ttctttgagt tccagaagtc
     2641 catacaatat gactataagc tagcccttta tgatctgcgg cattctttga tacatatatc
     2701 ggccttaaag aagtccggta ttttaaccaa tgaggaatgg caaaagctga attcggcttt
     2761 atctctaata gaaaaagaaa taaaagaaaa taaattcaag ccaaatctgc aatccgaaga
     2821 catccatacg gaaattcaaa atcgggttga aaagaaagtg gggaagctgg cccagaaact
     2881 gcataccttg cgctcaagaa acgaccagat agcttttgat gagaaaaatt actgcggcat
     2941 tgaagcctgt aatatagctg attatttatc agaagtaata gccgggttag aatatctaag
     3001 cgccagatat aaaaattcgc agattcccgg ttatacccat acccgaaggg cgcaaaaggt
     3061 tgcctttgcg gattatttag gggcctttga ggctatgtgc gccagagata aagaacggtt
     3121 aaccgctttt tcaaaaaaac tgattgcata tgtcggttcc ggggctttta aaggcacttc
     3181 cttaagccga gaatatgccg cggcgataaa agaatatttg aaatcagata gttcgcgcta
     3241 tattgcctta gtcaagaatg ccccggataa tgtgagcgac cgggatttta ttcttgaatt
     3301 cttgggcatc ctttctatcc tgcagatgca tctgtcccgt tttgccgagg atatgatact
     3361 tttttccact caagagttta atttcgtaga tttgccggag gaattctgcg ccggaagcag
     3421 tcttatgccg cacaagaaga acccggattt tctggaatta gtcaggggct ataccggaat
     3481 gatttatgga aaccttatgg cgcttttgac tattatgaaa gggcttcccc tcacgtataa
     3541 ccgggatatg cagttagata aagagccgtt gttttcttcg gtagatatta ttaaggacga
     3601 gcttaaaatc ctggcccggt ttataaaagg aataaaactt aacgaaaaag ttataggaaa
     3661 agcgttagaa gatgagagtt tgtatgccgt tgacctggcg gaatatctgg taaaagagaa
     3721 aaaggttcct tttgctcaag cccatgagat tattgggaaa atgatccgct atgccgagga
     3781 taataagtgt aaaataaagg atatggaaga tggcttgttg aataaatttt ccacgcacct
     3841 aaatcagaaa ataataaaag gggttttcag ataactcccc gagggataaa aatgcacgac
     3901 tttaaatata agaacaagga gctttattgc gaggggttaa agatagcgaa tatcgctaag
     3961 aaggtttcta ccccgtttta tctttacagc tataacaccc tgctggggca ttttcacaag
     4021 ctccataagg cctttaggac gcttaagccg cttatctgtt actcaatgaa ggccaattcc
     4081 aatttgagcc tttgccgggc gctggtaaag gccggttccg ggctggacat tgtctccgga
     4141 ggcgaattgt ataaggccct tttagttggc tgccatccca aaagaatagt ctatgcctcg
     4201 gtgggcaaaa ccgaagaaga gatccgtcag gcaattgcca aacagatact ctttttcaat
     4261 gtggagtctt taccggagct ggagttgatt aataaagtag ccggggattt gggggtaata
     4321 gcctcggtgg ctttaaggat caatccggat gtggaaccta agacccacag ctatattacg
     4381 accggaaagc tgaccaataa gttcggcatt gattttgaca ccgcttatac catactgcgc
     4441 cgcaaggata gattaggcca tctgcgcttt aacggcctgc acatccatat cggctcccag
     4501 ataatccagg ctcaacccta tcttcaggca atcaagaaaa tcctcaaatt tatccaaaaa
     4561 ctgaagaaag aggcgattca aattgaatat ctgaatatcg gaggcggctt agggattatc
     4621 tataacaagg aaaaacccca gaccgcggag gaattcgccc aaaaggttat tcctctatta
     4681 aaggacgccg gattaaagat aattttagaa ccgggaaggt ttattgtggg taatgccgga
     4741 atcttggtta caaaaatact gtatattaag aaaacccctt taaagaattt tgtaatcacg
     4801 gatgcaggga tgaatgattt gatccggcca tcgctttacg gagcctatca tgatatcctc
     4861 ccgttacgga atatgaagga tgaaggacga aaggcgatca aggctgatgt ggtgggcccg
     4921 atttgtgagt cgggtgattt ttttgccaaa gaccgatatt taaaaaatat taccgaaggt
     4981 gatctcctgg caataatgag cgccggggcc tatggtttct ctatggcctc taactataac
     5041 tgccgcctcc gtccggcaga ggttctggtt aatggaaacc ggttttatgt agcgcgtaag
     5101 cgcgagagtt acttagattt agcgcgcaag gatgtgatcc cggaatttct gaaatgacga
     5161 agatagcgtt tactaaaatt gttgcctctg ggaatgattt tgttatcata gaaaaagata
     5221 atattttgtc tttcgtcctt cgtccttcgt cactcgttaa gagtatatgt gaccggaaat
     5281 tcggggcggg cgcggatgga gcgcttttgc tggaggagtc aaaaaaggct gatatccgga
     5341 tgcggatttt taatgccgat ggttcagaag cggatatgtg cggcaacggg gcccgctctg
     5401 cggcattgta tcacagtctg cggtctccgg tctatagtct gcggtcaatg ttaaaaatag
     5461 agacgaaagc aggtataatt gaagcgcggg tattaaaaga tacagtaaaa atcaaactaa
     5521 ccgatcctaa agagtatcag aaaaagatcc ccatggtaat ccacgggcgc aaactaaagg
     5581 tcaattttat caataccggg gttccccata cgattgtttt tgtccaggca atagaacaaa
     5641 tagatgtgac aaacatcggc agggagatcc gttatcataa atatttctct cccgcgggga
     5701 caaacgtgaa ttttgtggaa atggttaata ataataccat taaagcgcgc acctatgagc
     5761 gcggggttga ggatgaaacc ctggcctgcg gcacaggtgc agcggcctcg gcaatagtct
     5821 tcgctctcca gccagcctgc cttgtcggcc ggcaggctgg ctccagtctc tgtaaaaaaa
     5881 ttaatgttat cacccaaggc ggggagacct taaaagtata cttcaaaaaa gaggctgata
     5941 gaataagcga tgtctggctg gaaggcaggg cgaaaattgt ctacaaagga gagttctatg
     6001 tttaaaggct caatgaccgc gatagtcacc ccttttaaag atggaaagat agacgaggag
     6061 aaattaagtg aattggttga gtttcagatc aaaaataaga cctctgccct tgtgccttgc
     6121 gggactaccg gagaatccgc caccttatcc tgggccgagc atgagcgggt aattgagata
     6181 gtcattgagg cctcgggtaa aagggtgccg gtgatcgccg gtaccggctc taattccacg
     6241 gaagaagcgg taatgctgac caaacaggcc gcgaaatccg gaagcgacgc caccctgcat
     6301 gtctcgccat attataaccg tcccactcaa aaagggctgt atctgcattt taaggccgta
     6361 tccgaatgcg cggatatccc ggtaatcctt tataatatcg cctctcgcac cggggtaaat
     6421 attgagccgg aaaccatcgc caagttagct aatgactgta aaaatatcgt aggagtaaaa
     6481 gaggcatccg gttccctgga acagatgtcc cggataaagg ctttatgccc gcgggacttt
     6541 gctcttatct ccggggacga tgccttaacc ctgccggtat tggccatagg cggcacaggg
     6601 gtaatttcag tggtggctaa tattgcgccc aaggataccg ccaatatgat tgaggccttt
     6661 gaaaagggga atcttaaaaa agcccaggaa ctgcactata agatactgcc gttaattaag
     6721 gcgatgttta ttgagaccaa tcccataccg gtaaagacgg caatggggct gatgaagctt
     6781 tgccagccgg atttgcggct tccgatgtgc gagatgttac cggaaaatca ggaaaagctg
     6841 aaaaaggcgt tgaaagatta cggattatta taaaggttgg tagcggcggc atttatgccg
     6901 ccattctatg gagattaaag gaatgataaa acttggtgta ttaggcgcgg gcggcaggat
     6961 gggcagacgg atcattgagc ttgcccttaa tgataaggag ctggaggttg tcctggcctt
     7021 ggaaaggaag ggccatcatt taatcggtaa aaatatagat aaggtaaaaa tttcctccag
     7081 ccccgacggt atattcctta ctgacgcgct aatagatttt accgttcccg aggcgtcta
//
LOCUS       DATDUB010000141         2516 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_434947, whole genome shotgun sequence.
ACCESSION   DATDUB010000141 DATDUB010000000
VERSION     DATDUB010000141.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2516)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2516)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2516
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_434947"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            231..620
                     /gene="nifU"
                     /locus_tag="VJA84_02845"
     CDS             231..620
                     /gene="nifU"
                     /locus_tag="VJA84_02845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011345084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly scaffold protein NifU"
                     /protein_id="HLD41095.1"
                     /translation="MEQAYSEKVMDHFLHPRNIGEIPDASGVGNVGNPVCGDIMRLYI
                     KVDNEKIIDVKFKTFGCGAAISTSSMVTEMVKGRTIAEAMEITNKAVAEALGGLPAVK
                     MHCSVLAEEALKSAIEDYRKKQQQVKV"
     gene            620..1177
                     /locus_tag="VJA84_02850"
     CDS             620..1177
                     /locus_tag="VJA84_02850"
                     /EC_number="6.3.3.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR02727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030272 - 5-formyltetrahydrofolate
                     cyclo-ligase activity [Evidence IEA];
                     GO_process: GO:0006730 - one-carbon metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HLD41096.1"
                     /translation="MADKRNLRKLMLKRLNNQKEESRGEKSIKIKEKLFRLNVFKKAK
                     TVMMYLALNPEVQTYQMIEEALRLGKRVALPVCDTKAKKITPCLIKGLESVYLKEGPY
                     GIKEPSGKKAVNIREINLCLVPGLAFDLSGNRLGRGMGYYDRFLGSLAAGTPKIGLAF
                     KFQVLKSLSSYCLPHDLRVDQVVFA"
     gene            1281..>2516
                     /gene="rny"
                     /locus_tag="VJA84_02855"
     CDS             1281..>2516
                     /gene="rny"
                     /locus_tag="VJA84_02855"
                     /inference="COORDINATES: protein motif:HMM:TIGR03319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004521 - RNA endonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006402 - mRNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease Y"
                     /protein_id="HLD41097.1"
                     /translation="MNFTIIIIALLAAMGLGYVLRKSLSEKKARDAEQRAKELIEQAK
                     KSVENLRKEAELEGKAEVLRLRQEFEASTKARREEMLGLEKRLTVKEDNVDRRLSLIE
                     KKEKELDAKYDNLRKDDEALKAKDRQLTALVNEEKDRLQKISGLTVEEAKKVLLARLS
                     EELNNEKAVALKNYEDEVKTSADKKAREIISLAIQRCAVEHTVESTVSVVSLPSDEMK
                     GRIIGREGRNIRALEMATGIDVIIDDTPEAVTISGFDPVRREIAKLTLEKLMSDGRIH
                     PGRIEEIAEKTKREMEDRIREEGERAAFEIGIHGLHPEEVKLLGRLKFRTSYGQNALQ
                     HSKEVAYLMWVMASELNMDFRLSRRIGLLHDIGKAVDHQVEGTHARIGAELAKKYGET
                     NEVIAAVECHHEEQEPKSIL"
BASE COUNT          715 a          527 c          740 g          534 t
ORIGIN      
        1 cgcctgggtt ttgatttata aggaattgga aaagaagggg cagttggata agatgaaggc
       61 gctttcaaag cctaaggatt acggcaaggc cggcaagccc cataaagtgt tagttaatag
      121 ttaaaaatcg ctgaactacg cggaatgtca cgcggaacta cgcaatatag attatgcgtt
      181 gttctgcgtt cggttcagcg tggttcagcg tccaagcgaa gcgaggcaaa atggaacaag
      241 catacagcga aaaggtaatg gatcattttc tgcaccccag gaatatcggg gagatcccgg
      301 atgccagcgg agtaggtaat gtcgggaatc ccgtatgcgg ggacataatg aggttataca
      361 tcaaggttga caacgagaaa attatagacg taaagtttaa gacctttggc tgcggggcgg
      421 ccatctccac cagttcaatg gttaccgaga tggtcaaggg ccggaccatt gccgaggcaa
      481 tggagattac caataaggcc gtggccgagg ccttaggcgg gcttccggca gtcaagatgc
      541 actgttcggt cctggctgaa gaggccctga aatcggcgat tgaggattac cgtaaaaaac
      601 aacagcaagt taaggtttaa tggcagacaa acggaactta agaaaattaa tgttaaaaag
      661 gctgaacaat cagaaggagg aaagccgcgg agaaaagtct ataaagataa aggaaaaact
      721 ttttaggctt aatgtcttta agaaagcaaa gacagtaatg atgtatctcg cgcttaatcc
      781 ggaggtccag acatatcaga tgattgaaga ggcattaagg ctgggaaaaa gggtcgcgct
      841 tcctgtctgc gacacaaagg caaagaaaat aacaccttgt ttgattaaag gtttagaatc
      901 agtttatctt aaagagggcc cttatggcat taaggagcca tccggcaaaa aggcggttaa
      961 tatccgggag atcaatttgt gccttgtccc gggtttggcc tttgacttaa gcggaaaccg
     1021 cttgggccgg ggaatgggtt attacgaccg ttttttaggc tctcttgccg cgggcacgcc
     1081 caaaataggc ctggccttta aattccaagt cttaaaaagt ctctcctctt attgtctgcc
     1141 tcacgatctg cgcgtggatc aagtcgtctt cgcttaagcg cgaaagcgcg aaaatcacag
     1201 ttttataaaa gtaacaccgc aaaggccgcg aaactttacg tttctcgcgg cgtttctcgc
     1261 ggtttgagga gggataaatt atgaatttta ctattattat aattgccttg ttggcagcta
     1321 tgggcctggg atatgtttta aggaaaagcc tgtccgagaa aaaggcccgg gatgccgaac
     1381 agagggccaa agagctgatt gagcaggcca agaaaagcgt tgagaacctg cgcaaagagg
     1441 cggagctgga gggcaaggcc gaggtcttgc gtctgcgcca ggaatttgag gcctctacca
     1501 aggccaggcg cgaagagatg ctggggctgg agaagcgcct caccgttaag gaagataatg
     1561 ttgaccgcag gttgagcctg attgagaaaa aggaaaagga actggacgcc aaatacgata
     1621 atttgcgcaa agatgatgag gccttgaagg ccaaagaccg ccaactcacc gccctggtta
     1681 atgaggaaaa ggaccgtctc cagaagattt ccgggttgac tgttgaagag gccaagaagg
     1741 tcctgcttgc ccgtttatcc gaagagctga acaatgaaaa ggcggtggcg cttaagaatt
     1801 atgaggatga ggtcaagacc tccgcggata aaaaggccag agagataatc agcctggcta
     1861 tccagcgctg cgcggtggag cataccgtag agtctactgt aagcgtggtc agcctgccca
     1921 gcgatgagat gaaaggccgg ataatcggcc gggagggcag gaatatccgg gccctggaaa
     1981 tggctaccgg gatagatgtg attattgacg ataccccgga ggcggtgact atttccggat
     2041 ttgacccggt ccggcgggag attgccaagc ttaccctgga gaagttgatg tctgacggca
     2101 ggatccatcc gggcaggatt gaggagattg ccgagaagac caagcgcgag atggaggaca
     2161 gaatccgcga agagggggaa cgggcggcct ttgagatcgg catccacggc ctgcacccgg
     2221 aggaggtaaa gcttttgggc cggctgaaat tccgcaccag ctacggacag aacgctctcc
     2281 agcattccaa ggaagtggct tatctgatgt gggtaatggc ctcggaattg aatatggact
     2341 ttcgcctaag ccgcaggatt ggtttactgc atgatatcgg caaggcggtt gaccatcagg
     2401 tggaaggcac ccatgcccgc atcggagcgg aattagccaa gaaatacggc gagactaacg
     2461 aggtgattgc cgccgtggag tgccatcatg aggaacagga gcctaaaagc attttg
//
LOCUS       DATDUB010000142         4056 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_759121, whole genome shotgun sequence.
ACCESSION   DATDUB010000142 DATDUB010000000
VERSION     DATDUB010000142.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 4056)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4056)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4056
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_759121"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..281)
                     /locus_tag="VJA84_02860"
     CDS             complement(<1..281)
                     /locus_tag="VJA84_02860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013043533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase"
                     /protein_id="HLD41098.1"
                     /translation="MVKSGILLIDKPQGLTSHDVVDAVRRRFGIRRVGHSGTLDPLAT
                     GLLIILVDKATSQFNRFTNFDKEYAATLTMGTATDSGDSQGKVIASAGY"
     gene            complement(274..1251)
                     /locus_tag="VJA84_02865"
     CDS             complement(274..1251)
                     /locus_tag="VJA84_02865"
                     /EC_number="3.1.3.7"
                     /inference="COORDINATES: protein motif:HMM:NF013528.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004527 - exonuclease activity [Evidence
                     IEA];
                     GO_function: GO:0008441 - 3'(2'),5'-bisphosphate
                     nucleotidase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional oligoribonuclease/PAP phosphatase
                     NrnA"
                     /protein_id="HLD41099.1"
                     /translation="MSLKKAARLIRENNSFLISSHINPEADAIGSELGFLNLLRKLGK
                     EGLIVNESSLPVECRGLPGVKEIKQFPFKVNGFDCGVYLDSGEASRVGKVNSILSQAG
                     VSLNIDHHFSNKRFAGVNWVDHSASCTCEMVYRLYKYFRIEIDKDAALALYAGIIADT
                     GSFHYSNTAVSTHRIAAALLKTGISPPKTYNMLFENNTFDDIRLLGQVLLAMESASKG
                     KIVWAQVPAKSLNKLFPEVDLAEEVLGLMRSIKGVELAIIFKEARDKKNQARINFRSQ
                     SVFDCNQLASEFGGGGHKNASGATVTGLLAEIKKKVLRRAKEMMERQYG"
     gene            complement(1211..1582)
                     /gene="rbfA"
                     /locus_tag="VJA84_02870"
     CDS             complement(1211..1582)
                     /gene="rbfA"
                     /locus_tag="VJA84_02870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009656014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HLD41100.1"
                     /translation="MSRIEKVSEALKQEVSNIIHDELRDPRLGFITVMRVEVTRDLQI
                     AKVFYSVMGSPEQKLKCGEALESAAGFIRRLVGDRLRLRFTPEVIFKLDKSVDYSIEI
                     AEKIERVKNELKKGRPADKGK"
     gene            complement(1820..3100)
                     /locus_tag="VJA84_02875"
     CDS             complement(1820..3100)
                     /locus_tag="VJA84_02875"
                     /inference="COORDINATES: protein motif:HMM:NF013871.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41101.1"
                     /translation="MENLSKKLERQPAQTRERIRLISRVAGELNCRVFIVGGFVRDLI
                     MGVKDFDLDITAEIDGIALAERLNRDFNGRFSQHKRFGTASIVLPDKSKLDVATSRKE
                     IYETPASLPRVFPGTIRDDLARRDFSINAIAVDVSPDGFGEVVDFFQGRQDIRCGLIR
                     VLHDLSFIDDPTRMLRAVRFEQRFGFKIEGRSLSLLHQACGQKMLEQVHSHRLRDEFI
                     LILKEPQALKCLKRMKELCGFDFIRQGFHLTEAQFSRLEKVSQVYHWYQKNCAHKHKV
                     ELWLLYLMVILEGLEIERLKITLKEFAFHKRECDKVISFKMDIPKVIPHLETAASPSH
                     IYKILFPLSYEAVLLILLRDDNPSFGLKVKDYLQHHSRGQIHLKGEDLKGLGIVPGPR
                     FQEILKRLLYAKLDAKFKDREGELEYLKENLCNV"
     gene            complement(3108..3995)
                     /gene="xerD"
                     /locus_tag="VJA84_02880"
     CDS             complement(3108..3995)
                     /gene="xerD"
                     /locus_tag="VJA84_02880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005827359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009009 - site-specific recombinase
                     activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific tyrosine recombinase XerD"
                     /protein_id="HLD41102.1"
                     /translation="MQELADNFLSYLSVERALSKNTLLSYGRDLKKYIRYLQELGIKS
                     LSQTSRKEISDFMFKLKDEGISSVSIARNLAAIKVFCRFLVRERLIPDDPSALVDSPK
                     LWKRIPDSLSEREVNNLLSAADVSRTQGIRDRAILELMYATGLRVSEAVNLKIQDVNL
                     EVGFLRCLGKGSKERVVPLGKEAISAVNKYLLEARPRLARPSSDNALFLSRLGKRISR
                     QSFWKLIKAYSAKAGIQKAIRPHSLRHSFATHLLERGADLRSVQEMLGHADISTTQIY
                     THIDKNRLKAIHKKFHPRP"
BASE COUNT         1021 a         1129 c          873 g         1033 t
ORIGIN      
        1 tcatatccgg cgctggcaat gaccttgcct tgagaatccc cgctgtcggt ggccgtgccc
       61 atagttaagg tagcggcata ctccttgtca aaattagtga agcggttgaa ttgcgaggta
      121 gccttgtcca ccaggattat cagcaaaccc gtggctaaag gatcaagggt gccggaatgg
      181 cccacccggc gtatcccgaa cctcctgcgc accgcgtcca ccacatcgtg ggaggtcagt
      241 ccttgcggct tatcaatcaa taatatccca gatttaacca tattgccttt ccatcatctc
      301 ttttgcccgc cgcaaaacct tcttctttat ctccgccagg agccccgtga ccgtggctcc
      361 gctggcgttc ttgtggccgc ctcctccgaa ttccgaggcc aattggttac aatcaaacac
      421 gctctgggaa cggaaattaa tccgggcctg gttcttttta tcgcgcgcct ctttaaagat
      481 aatcgccagc tccactcctt tgatagagcg cattagcccc aggacttctt cagccaaatc
      541 cacctcgggg aataatttat tcaagctttt ggcggggacc tgcgcccaga caatcttacc
      601 tttagaggcc gattccatag ccagcaaaac ctgccccaga agcctgatgt cgtcaaaggt
      661 attattttca aaaagcatat tgtaagtctt tggcggggat atgcctgttt taagcagggc
      721 cgcggcaatc cggtgggtgg aaaccgcggt attgctgtaa tggaaagacc cggtatccgc
      781 gattatcccg gcataaaggg ccaaggccgc atccttgtct atctctatcc tgaaatattt
      841 ataaagccgg taaaccatct cgcaggtgca ggaggcggaa tggtcaaccc agtttacccc
      901 ggcaaatctc ttattggaga aatgatggtc aatattcagg ctgaccccgg cctgggaaag
      961 gatggagttg accttgccaa cgcgcgaggc ctctccggaa tctaagtaaa ccccgcagtc
     1021 aaagccattc accttgaatg ggaactgctt aatttccttc acccccggaa gcccccggca
     1081 ctcaaccggc agactgcttt cattgacaat aagtccttct ttgcctaact tccttaaaag
     1141 gttcaagaaa cccagttccg agcctatggc atcggcctct ggattaatat gcgaactaat
     1201 cagaaaactg ttattttccc ttatcagccg ggcggccttt tttaagctca ttcttgaccc
     1261 tttctatctt ttcggcaatc tcaatgctgt aatcaaccga tttgtccaat ttaaatataa
     1321 cctccggggt aaaacgcaga cgcagcctgt ctccgactaa gcggcggata aatcccgcgg
     1381 ctgactctaa ggcctccccg catttaagct tttgctccgg actgcccatt acgctgtaaa
     1441 aaaccttggc tatctgcagg tccctggtta cctccacccg cattaccgtg ataaaaccta
     1501 aacgggggtc ccgcaattca tcgtgaataa tattgcttac ttcctgcttg agcgcctctg
     1561 acaccttctc tatcctgctc ataatatctc ctatgttaaa attcaaataa ttccgtgtaa
     1621 tggaattaaa atttgctttt tcattccaca ttcagactgt gtcataatct cttaaaatga
     1681 ccattttgtc attctgaggg agcagagcga ccgaagaatc tcgtcggtaa tttaaaagac
     1741 gagatccttc gctatccgct caggatgaca ttgtgacaca gtctgattac agcattccac
     1801 ccgcgttaca cataaaactt tacacattac acagattctc cttcaaatat tccaattccc
     1861 cttccctgtc tttaaattta gcgtccaact tggcataaag caggcgtttt aagatttcct
     1921 ggaaacgcgg gccagggaca atacccaatc cttttaaatc ctcgccttta agatgtatct
     1981 ggccgcggct gtgatgctgg aggtaatcct tgaccttaag cccaaaggaa ggattatcat
     2041 cccttagcag gataagcagg accgcctcat aactcaaagg aaacagaatt ttatagatat
     2101 ggctggggga ggccgctgtt tccagatgcg ggataacctt agggatatcc atcttaaaag
     2161 aaataacctt atcgcattcc ctcttatgaa aggcaaattc ctttaaggtg atcttcaacc
     2221 gctctatttc caggccttcc aatataacca ttaaatacaa aagccataac tccaccttat
     2281 gtttatgggc gcagtttttc tgataccaat gataaacctg actaaccttc tccaggcggc
     2341 tgaattgcgc ctccgtaaga tgaaaaccct ggcggataaa atcaaacccg caaagctctt
     2401 tcatcctttt caggcattta agcgcctgcg gttcttttaa tatcaggata aattcatccc
     2461 gcaggcggtg gctgtgcacc tgttccagca tcttttgccc gcaggcctga tgcaagaggc
     2521 ttaaggagcg cccctcaatc ttaaaaccaa acctctgctc aaacctcact gcccgaagca
     2581 tccgggtagg gtcgtcaata aagcttaaat cgtgcaaaac gcggataagg ccgcatctta
     2641 tgtcctgacg accctgaaaa aaatctacca cctctccaaa tccatccggg gatacatcca
     2701 cagctatagc attaatggag aaatcccggc gggcaaggtc atccctgatt gtcccgggga
     2761 acaccctggg cagggaggcc ggggtttcgt aaatctcctt tcttgaggta gccacatcca
     2821 gcttgctttt gtccggcaag acaatggatg ccgtgccaaa acgcttatgt tggctaaaac
     2881 ggccgttaaa atcacggtta agcctctcgg ccaaggctat gccgtcaatc tccgcggtta
     2941 tatccaaatc aaaatccttc acccccatta tcaggtcgcg gacaaaccca ccgacgataa
     3001 aaacccggca gttcagctcc ccggcaacgc ggctgatcag ccgtatcctt tcccgcgtct
     3061 gcgcgggctg gcgctctaat ttcttactta aattttccat ttctctgtca gggcctggga
     3121 tgaaatttct tatgaatagc tttaagccta tttttatcta tatgggtgta tatctgggtg
     3181 gtagagatat ccgcgtggcc aagcatctcc tgcacgctcc ttaaatccgc tccccgctcc
     3241 aaaaggtgag tggcaaagga atggcgcagg gaatgcggac ggattgcctt ttgtattccg
     3301 gccttagcag aataggcctt aatcagcttc caaaaggact gccgggatat ccgcttgccc
     3361 aggcggctta agaatagggc gttatccgaa gacggcctag ccaatctcgg cctggcctca
     3421 agcagatatt tgtttaccgc ggagattgcc tcttttccca aagggaccac cctttcttta
     3481 gagcccttgc ccagacagcg caggaaaccc acctctaaat taacatcctg gatcttaagg
     3541 ttgaccgcct ccgagacccg caggccggtg gcatacatca gttccaatat cgcccggtcc
     3601 cgaatcccct gggtccggct gacatccgcc gcggaaagca ggttattcac ctccctctcg
     3661 gaaaggctgt ccgggatccg tttccataac ttcggtgaat ctaccaaagc cgaagggtca
     3721 tccggaataa gcctttcccg gaccaggaag cggcaaaaaa ccttaatcgc ggccaggttc
     3781 cgggcgatag agacggaaga aatgccctcg tccttaagct taaacataaa atcgctgatc
     3841 tctttcctgc tggtctggga taaagattta atccctagtt cttgcaggta acggatatac
     3901 ttcttcaagt cccggccata ggaaagcagg gtattcttgc tcaaggcccg ctcaacagac
     3961 aaatagctca agaaattatc cgctaattcc tgcacaatgc tccccctccc ctaaccccgc
     4021 ccacaagaga ctgggtcata attgcttttt ctccct
//
LOCUS       DATDUB010000143         3415 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_759760, whole genome shotgun sequence.
ACCESSION   DATDUB010000143 DATDUB010000000
VERSION     DATDUB010000143.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3415)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3415)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3415
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_759760"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..633)
                     /locus_tag="VJA84_02885"
     CDS             complement(<1..633)
                     /locus_tag="VJA84_02885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007221167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate mutase"
                     /protein_id="HLD41103.1"
                     /translation="MKKILYVVLDGLGDLPIKELGDKTPLEAALTPNMDKLAQKGKTG
                     IVYPVGKAIAPESDVAVICLLGYDAHKYYTGRGPLESYAEGLELHDGDLALRVNFSTV
                     DKDGKTILDRRVGRNLTTEEARELAQELNSKVILSSGTFEFRSTIGHRGVLVIRSQRG
                     RLSGWITNPDPAYGREGVFGIALEKFPNTIQESRPVEGHENDPKAIEAAKL"
     gene            complement(870..3170)
                     /locus_tag="VJA84_02890"
     CDS             complement(870..3170)
                     /locus_tag="VJA84_02890"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013276855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="vitamin B12-dependent ribonucleotide reductase"
                     /protein_id="HLD41104.1"
                     /translation="MSVKLSENALKVLERRYLKKDAAGKVVEAPKDLFRRVASTIAGV
                     EKAYGRNESQIRDLENKFYELMANLEFMPNSPTLMNAGRELSQLSACFVLPIEDSMES
                     IFESLKATAMIHKSGGGTGFSFSRLRGKNSNVFSTGGVASGPVSFMKVYDAATQAVKQ
                     GGTRRGANMGILRVDHPDILEFIQCKDTDKEITNFNISVAVTDDFMRKLQKGEDYDLI
                     DPHTKASVKRLNTKYVFDLIVRQAHKNGEPGIIFIDKININNPTPKLVAIESTNPCGE
                     QPLLPYESCNLGSINLEKIILSKDDRTEIDWQKLKTVTHLAAHFLDNVIDANKFPLPE
                     IEKMTRTNRKIGLGVMGWASLLCRLGISYNSEEALQLAEKVMAFIWEEARKKSEELAK
                     VKGVFPSFKGSALDKPGSPRLRNATLTTIAPTGTISIIAGPCSSGIEPLFAISYYRMV
                     MDQDKLVEVDPAFEEIARKRGFYSRELMAKIAEKGCIQQIAEVPEDIKRVFVVSHDIA
                     PEWHIRMQAAFQKCTDNATSKTINMPYEATLEDVRQAYLMAYDLGCKGITIYRDRSRE
                     DQVLNVERKGGKMEKTAVSDSEKKHESGADMIAPRPRPEVVVGTTTKVATGCGNLYVT
                     INSDEEEMPFEVFTQMGKAGGCAASQLEAIGRLVSLAFRSGIEVKAIIEQLRNIRCPS
                     PSWEKGVRIFSCADAISRVVEKRLLNINTAHKTNESAAKLTKAEEQLLEKNVAYNIIG
                     VCPDCGGALRHEEGCVKCQSCGYTKC"
BASE COUNT          826 a          935 c          771 g          883 t
ORIGIN      
        1 aagcttggcc gcctcaattg ccttagggtc attttcatgg ccttcaaccg gccttgattc
       61 ctgaatagta ttgggaaact tttccaaggc aattccaaac accccttccc ggccataggc
      121 tgggtcagga ttggtaatcc agccggataa acggccgcgc tgactgcgaa taaccaacac
      181 tccccggtgt ccgatagtac tgcgaaattc aaaggttccg gagcttaaga ttaccttgga
      241 atttaattcc tgggccagct ccctggcttc ctcagtagtt aagttcctgc ctacccggcg
      301 gtcaaggata gttttcccgt ctttatccac agtggaaaaa ttaaccctca aagccaaatc
      361 cccgtcgtgg agttccaggc cctcggcgta agactctaaa gggcctcttc cggtataata
      421 cttatgggcg tcataaccta aaaggcagat caccgccaca tccgactccg gggctattgc
      481 cttacccact ggatagacta tgccggtctt tcctttttgg gccagcttgt ccatattcgg
      541 ggtaagcgcc gcctccagcg gggtcttatc ccccaattcc ttaatcggta aatcccctaa
      601 accgtctaag acaacatata atattttttt catagattat tagagcacaa ggcacaactg
      661 gttatgccgg actgcggcag gtgttccgcg cgcagttccg caggcgtcat tccctaatgt
      721 agttattcag aaaaacgcct aagccagagg gcgatggtgc ggcaaccgaa tagccgcagc
      781 cagaggatgt ttgagcacgg aacgcctgcc gcagtccggc agggcgcgat aaatcgcgcc
      841 gctacgatgt aacgcgaata acccttatat taacacttcg tatacccgca ggactggcac
      901 ttgacacagc cttcctcgtg gcgtaaggcc cccccgcagt ccgggcagac tccgattata
      961 ttataagcga catttttttc aagcaactgt tcttccgcct tggtcagctt agcggcggac
     1021 tcattggttt tatgcgcggt attgatgttt aaaagcctct tctccaccac ccgggaaata
     1081 gcatccgcgc aagagaagat cctcacccct ttttcccagg aaggcgaagg acagcgaata
     1141 ttgcgcaatt gctcaattat cgccttaacc tcaatcccgg agcgaaaggc aagcgatacc
     1201 aaccggccaa tcgcctctaa ctggctggcg gcgcagccgc cggccttacc catctgggta
     1261 aaaacctcga aaggcatctc ttcttcgtcg gaatttatgg ttacataaag attgccgcat
     1321 ccggtggcta ctttagtagt ggttcccacc accacctccg gcctgggccg gggggcaatc
     1381 atatccgccc cggactcatg ttttttctcg ctatcagaaa cggctgtttt ttccatcttg
     1441 ccccctttac gctcaacatt caatacctgg tcctcacggg aacggtcacg gtaaatagtt
     1501 atccctttac agcctaaatc atacgccatt aaataggcct gacgcacgtc ttccaaggtt
     1561 gcctcgtaag gcatattgat ggtcttggaa gtggcgttat cggtacattt ctggaatgcc
     1621 gcctgcatcc ggatatgcca ctcgggagca atatcatgag ataccacaaa aacccttttt
     1681 atgtcttccg ggacctcggc tatctgctgg atacagccct tctcggcaat cttagccatc
     1741 aattcccggg aataaaaacc ccttttcctg gcaatctctt caaatgccgg gtcaacctct
     1801 actaatttat cctggtccat caccatccgg taataagaaa tggcaaacaa aggctcaatc
     1861 cccgaagagc agggcccggc aataatgctt atggtcccgg taggggcgat agtggtcagg
     1921 gtggcattgc gcaggcgcgg cgaaccgggt ttatccaggg cgcttccttt aaaagaggga
     1981 aacacccctt taaccttggc taattcttca gacttcttgc gcgcctcctc ccagataaag
     2041 gccattacct tttccgctaa ctgcagggcc tcttcggaat tataggatat gcccaaacgg
     2101 cacaagaggc tggcccagcc catcaccccc aggcctatct tacggttagt ccgggtcatc
     2161 ttctcaattt caggcagggg gaatttattg gcgtcaatga cattatctaa gaaatgcgcc
     2221 gccagatggg taaccgtctt cagcttctgc cagtcaatct ccgtccggtc atctttgctc
     2281 aaaataatct tctctaaatt tattgagccc aggttgcagg attcataagg caaaagtggc
     2341 tgctctccgc aaggattagt gctttcaatc gccactaatt taggggtggg attattgatg
     2401 tttatcttat caataaagat tatccccggc tcgccgttct tatgggcctg cctgacaatc
     2461 agatcaaaga catatttagt attaagccgt tttaccgatg ccttggtatg cggatcaatc
     2521 aaatcataat cctcgccctt ttggagtttc cgcataaaat catcggtaac cgcgaccgag
     2581 atattaaaat tggtgatctc cttatccgta tccttgcact gaataaactc cagtatatcc
     2641 ggatggtcaa cccgcaaaat ccccatattc gcgccccggc gggtgcctcc ctgcttgacc
     2701 gcctgggtgg ccgcgtcata gaccttcata aaggaaaccg ggccggaggc cacccctccg
     2761 gtggaaaaaa cattgctgtt tttaccccgc aggcgggaaa aggaaaaccc tgtccctcct
     2821 cctgacttgt ggatcatagc ggtggccttg aggctctcaa aaatagactc catggaatct
     2881 tctatgggca ggacaaaaca ggctgacagc tgggaaagct ctctaccggc attcatcagg
     2941 gtgggcgaat taggcataaa ttccagatta gccatcagct cataaaactt attttccagg
     3001 tcccttatct gggattcgtt tctaccatag gccttttcca ccccggcaat ggtggaggcc
     3061 acccggcgaa aaagatcttt aggggcctca accacttttc cggcggcatc ctttttcagg
     3121 taacgccgtt ccaggacctt gagcgcgttt tccgagagtt ttactgacac ctgacacctt
     3181 ttttattttc tggatttctg atttttgaat ttatttaaaa gtgttattta aaatggggat
     3241 tttccgcagt atagcaggcg gaaaaatctt tgtcaagtaa aatactatat attgtgtttc
     3301 ttaaattcaa cagccacaac aagttgtgcc taccccgacg ataatcccga gctttgcgat
     3361 aattcgcgcg cggcgcgggc ggttaaagcc aatatttctt gcgaacgctc aaggg
//
LOCUS       DATDUB010000144         3449 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_617781, whole genome shotgun sequence.
ACCESSION   DATDUB010000144 DATDUB010000000
VERSION     DATDUB010000144.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3449)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3449)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3449
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_617781"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..593)
                     /locus_tag="VJA84_02895"
     CDS             complement(<1..593)
                     /locus_tag="VJA84_02895"
                     /inference="COORDINATES: protein motif:HMM:NF012652.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase, T2SS/T4P/T4SS family"
                     /protein_id="HLD41105.1"
                     /translation="MSQELKDRIRKAIREQSHIFSGEKTDENHLRLVIRRMIEELCLK
                     DHLKIEEAVSAKITEELVNEFLGLGPLKALLEDKGITEIMVNGPHKVYIEKGGKKILS
                     EVAFENNQHLMHIIQKILAPTRRHVDEMTPFTDVSLPDGSRVNIIIPPLSLHGPVMTI
                     RKFLKEFGSVEDLAAKDTLSRNMADFLTAAIKAKLNI"
     gene            complement(571..1662)
                     /gene="ispG"
                     /locus_tag="VJA84_02900"
                     /gene_synonym="gcpE"
     CDS             complement(571..1662)
                     /gene="ispG"
                     /locus_tag="VJA84_02900"
                     /gene_synonym="gcpE"
                     /EC_number="1.17.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011025684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046429 - 4-hydroxy-3-methylbut-2-en-1-yl
                     diphosphate synthase activity [Evidence IEA];
                     GO_process: GO:0044237 - cellular metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HLD41106.1"
                     /translation="MMLKRRHSKEIKIGKVKIGGRNPIAIQSMTKVPTKDSRGAIAQI
                     KELENAGCDIARLAVRDEQDARAIADIKPAVKIPLVADIHFNWELALCAVKSGADKIR
                     LNPGNIYKKEQLKEVVACAKDYAVPIRVGLNSGSIPKIFRYNKKLRPALKLVQAALDY
                     IKILEGLKFRDIVISLKCSNVLETIEAYQKIAKECAYPLHLGLTATGFSEEGRIKSAV
                     ALGVLLAQGIGDTLRVSLTAEPVEEIRVAKYILASLGLRHFGPEIISCPACGRTEANI
                     EAIVNELYRRVFDASNASLLDRPVKLAVMGCVVNGPGEAEDADLAIAFGRNEGLIYKD
                     AKPLRKVPFDQAVNELLKEWKRYVPRTKR"
     gene            complement(1659..2732)
                     /gene="rseP"
                     /locus_tag="VJA84_02905"
     CDS             complement(1659..2732)
                     /gene="rseP"
                     /locus_tag="VJA84_02905"
                     /inference="COORDINATES: protein motif:HMM:NF014244.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RIP metalloprotease RseP"
                     /protein_id="HLD41107.1"
                     /translation="MIFIIILSVMILVHEFGHFYQAIRLGIRVEKFSLGFGPKIFGFK
                     KGLTEYLLCLVPFGGYVKLAGDSREELKGQRHEFLSRAPLDRVKVIFAGPALNYLLAF
                     FCFWLVNILGYPNITAKVGLVMPDYPAKEAGVVNGDIVTAIDGKKVNYWPELQNIIYQ
                     SRKASVELDVLRNGQSLKLTVALRQKVVKNILGVQQKINLMGIQSAGEAVLVRHNPFE
                     GFVLAGSSLWNLTVLTLNALGRMFTGALSLKESVTGPLGMFYVTSEAVKIGVSAVLHL
                     MAVLSASLAIFNLLPFPVLDGGHLFFLGLEKLRGRQLSPKTEDRITRAGLGLIITLAV
                     FVFLNDWVKYGVWDKLSGILIRK"
     gene            complement(2751..>3449)
                     /locus_tag="VJA84_02910"
     CDS             complement(2751..>3449)
                     /locus_tag="VJA84_02910"
                     /inference="COORDINATES: protein motif:HMM:NF024684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HLD41108.1"
                     /translation="AIFQCLEGREKAQVSKLYLTASGGALYDVPLKDFRSLSPARVLQ
                     HPRWKMGKKITVDSSTLMNKGLEVIEASWLFDTDVSKIKVVIHRQAIIHSMVEFVDGV
                     VLAQLGATDMGLPIQYALSYPRRLENKDYYLDFERLESLTFSKADTRKFPCLDFAYQA
                     AQAGGTLPAVMNAAIEEAVSGFLAGRISFVRIPKIIEKVMSAHKSAGLPELDEILEAD
                     KLARAEARRLIGKE"
BASE COUNT          876 a          976 c          725 g          872 t
ORIGIN      
        1 atgatattta actttgcctt tatggccgcg gtcaggaaat ccgccatatt cctgcttaag
       61 gtgtccttag ccgccaaatc ctccacgctg ccaaattcct tcaggaattt acggatagtc
      121 attaccggcc catgcaggga aagcggaggg ataattatat tcacccgtga gccgtcgggc
      181 aaagaaacat cggtaaaggg ggtcatctca tccacatgcc tgcgggtagg tgcgagtatt
      241 ttttggatta tgtgcatcag gtgctgatta ttctcaaaag ccacctctga aagtattttc
      301 ttgccgcctt tctcaatata caccttatgc ggcccgttga ccattatctc ggtaataccc
      361 ttatcttcaa gcagggcctt taaagggcca agccccagga attcgttaac caactcttcg
      421 gtaattttag cggatacggc ttcctcaatt ttaagatggt ctttcaggca gagctcttca
      481 atcatccggc ggataacaag acgcagatgg ttctcgtctg tcttttcccc gctaaagata
      541 tggctttgct cccggatcgc cttacggatc ctatctttta gttcttggga catagcgctt
      601 ccattccttt aacagttcat ttaccgcctg gtcaaaaggg acttttctta agggtttggc
      661 atccttgtaa atcaggcctt cattcctgcc aaaggctatg gccaggtccg cgtcctctgc
      721 ctctcccggg ccgttaacca cgcagcccat taccgccagc tttaccggtc tatccagcag
      781 actggcgtta gaggcgtcaa aaaccctccg gtaaagctca ttgactatcg cttctatatt
      841 tgcctcggtc ctgccgcagg ccggacagct gataatctcc gggccaaaat gcctcaagcc
      901 taagctggct aagatatatt tggcaacccg gatttcctca accggctcgg cagttaaaga
      961 aaccctcaag gtgtcaccaa tgccctgggc cagcaagacc cccaaagcca ccgcggactt
     1021 gatcctgcct tcctcggaaa aaccggtagc cgtaagcccc aggtgcaaag gataagcgca
     1081 ctctttagca atcttctgat aagcctcaat ggtttccagg acattagaac atttcaaaga
     1141 aatcacgata tcgcggaatt tcagtccctc taatatctta atgtaatcca aggccgcctg
     1201 gaccagcttt aaggccggcc tcaacttctt attatacctg aatatcttag gaattgaacc
     1261 ggaatttaag cctacccgga tagggacagc ataatccttg gcgcaggcaa ccacctcttt
     1321 taattgttct ttcttataga tgtttcccgg attaaggcgg atcttgtccg cgccgctctt
     1381 gacggcgcag agggccagtt cccagttaaa atgtatgtcc gcgactaaag gaatctttac
     1441 cgcgggctta atatcggcga tagcgcgcgc gtcttgctca tcccggaccg ccaaacgcgc
     1501 gatgtcacaa ccggcattct ccaattcttt tatctgggct atcgccccgc gggagtcctt
     1561 agtcgggacc ttagtcattg actgtatggc aatagggttc ctgccgccaa tcttgacctt
     1621 gccgattttt atctctttgc tgtgcctgcg tttaagcatc atttcctaat caatattccg
     1681 cttaatttat cccagacccc gtattttacc caatcattca agaaaacaaa cacagctaag
     1741 gttataataa ggcctaaacc cgcccgggta attctatctt cggtcttagg gcttaattgc
     1801 cggcccctta gtttttccag ccccaaaaag aaaagatgcc cgccgtctaa gaccggaaaa
     1861 ggcaaaaggt taaatatggc taaagaggcg cttaagaccg ccatcaaatg caggaccgcg
     1921 ctaaccccta tctttaccgc ttcagaagtg acataaaaca tccccagagg cccggtaacc
     1981 gactctttta gcgataatgc cccggtaaac atcctgccca aggcattcaa ggtcaataca
     2041 gtcaggttcc aaaggcttga gccggccaag acaaaacctt caaaaggatt atgccggact
     2101 aataccgcct caccagcgct ctggatgccc atcaggttga tcttttgctg gactcctaaa
     2161 atatttttta ccaccttttg ccttaaggcc acggttagtt tcagggactg gccgttcctt
     2221 aaaacatcca attccacgct ggccttgcgg ctctgataaa tgatattctg caactccggc
     2281 caataattca ctttcttgcc atctatagcg gtaacgatat ccccatttac cacacctgct
     2341 tccttagccg gataatccgg cataaccagc cccaccttag cagtaatatt aggatagccc
     2401 aggatattta ccagccagaa acagaagaag gccaagagat aattcagggc cggcccggca
     2461 aagatgacct tgacccggtc taacggagcg cgactcaaaa actcatgcct ctggcctttt
     2521 aattcttcac ggctgtctcc ggccagcttt acatatccgc cgaaagggac aaggcacaaa
     2581 agatactctg taaggccttt cttaaaaccg aaaatcttag gcccaaaccc cagagaaaac
     2641 ttctccaccc tgatccccag ccttatggcc tgataaaaat gcccgaactc atgcaccagg
     2701 atcattacac tcaagattat tatgaatatc aatactgaaa acatgtctga ttattccttc
     2761 cctataagcc ttcgggcctc tgctctggcc aatttatcgg cttccaagat ctcatccagc
     2821 tccgggagcc ccgcgctctt atgcgcggac atcaccttct caataatctt aggtatccgg
     2881 acaaaactta tcctccccgc taagaatccg ctcaccgcct cttcaatagc cgcgttcatc
     2941 actgccggga gggtccctcc agcctgcgcg gcctgatagg caaagtctaa gcaggggaat
     3001 ttcctggtat ccgccttaga aaaggtaagc gattccaggc gctcaaaatc aagataataa
     3061 tccttattct ccagcctgcg gggataactc aaggcatatt gtatgggcag gcccatatcc
     3121 gtcgcgccta actgggccag gacaaccccg tctacaaact ccaccataga gtggattatc
     3181 gcctgacggt gaataaccac cttgatttta gaaacatcgg tgtcaaaaag ccagctggcc
     3241 tcaattacct ctaacccctt attcatcagg gtggaggaat ccacggtaat cttcttgccc
     3301 atcttccagc gcgggtgttg caacacccgt gccggggaca gagagcggaa gtcctttaag
     3361 gggacatcat acagcgcccc gcctgaagcg gtaagataga gcttactcac ttgggctttc
     3421 tccctgcctt ctaagcactg aaagatagc
//
LOCUS       DATDUB010000145         2204 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_619161, whole genome shotgun sequence.
ACCESSION   DATDUB010000145 DATDUB010000000
VERSION     DATDUB010000145.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2204)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2204)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2204
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_619161"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(128..850)
                     /gene="pgeF"
                     /locus_tag="VJA84_02915"
     CDS             complement(128..850)
                     /gene="pgeF"
                     /locus_tag="VJA84_02915"
                     /inference="COORDINATES: protein motif:HMM:NF014619.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan editing factor PgeF"
                     /protein_id="HLD41109.1"
                     /translation="MLLKSYLFDSFKAQDCIAGFSLGKLDLGFKDNPALKENRGAFLG
                     QLGIAAENLVCGQQVHGNKVFPAEKKDSGRGAFEYETAVAGYDGLISARKKLPLAVFS
                     ADCLSVFMLDTRNRIAAILHAGWKGTKDRIALSALDIFKNKFNSHPRDIICGFGPCIR
                     DCCYEVGEEFRGYFSEGLVKRKGRVFLDLTRANLEQLISAGIPEINVTDCGICTSCQN
                     QDFFSYRKDGQNTGRMMSVIMM"
     gene            complement(841..1875)
                     /gene="pyk"
                     /locus_tag="VJA84_02920"
     CDS             complement(841..1875)
                     /gene="pyk"
                     /locus_tag="VJA84_02920"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: protein motif:HMM:NF004491.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004743 - pyruvate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HLD41110.1"
                     /translation="MPRTKIIATLGPASSTETVIRNMVLSGLDVCRLNFSHGDHPAHQ
                     RRLDIVRRVNQKYRRRIKILQDLEGNRIRVGRLKDGQPVELKKGAKIWLVRKDIPGNK
                     EEASLDYKGSFLDIPADSDIFIDDGNIRLKAKRVFKDKVLAEVVIGGALKEHKGVNIP
                     RGHLRFPRITEKDKLDIQFGIQNKVDYIAQSFVRDKYDCRALKKLFRDKIPDCRLVAK
                     IECRQAIKNIDEIIAESDMIMIARGDMGVCLPIWEVPLIQKMIIRKCNQKKKPVITAT
                     QMLESMTESFQPTRAEVADVANAALDGTDFVMLSAETAAGAYPVESVRMMNQIIKHTE
                     GSSLFRGRCC"
     gene            complement(1878..>2204)
                     /locus_tag="VJA84_02925"
     CDS             complement(1878..>2204)
                     /locus_tag="VJA84_02925"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011175683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_process: GO:0000413 - protein peptidyl-prolyl
                     isomerization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HLD41111.1"
                     /translation="GFMIQGGDPAGTGMGGESVWGKAFEDEVSAGAKFDRKGLLAMAN
                     AGPNTNGSQFFITVAPAPWLNMRHTIFGEVVEGYDVVERIENCRTEGQDRPLSEQKIV
                     KAYLQD"
BASE COUNT          511 a          653 c          486 g          554 t
ORIGIN      
        1 tttttgatcc cgtccacaat caattccgcc atcttcttgg tatgcccgct taaagaatga
       61 tacgccacca gtatcttagc catattctcc tccgtcctta tttccggaca ggcacagggg
      121 cctgtcccta catcataatc accgacatca tcctgccggt attctgcccg tctttgcgat
      181 aggaaaaaaa atcctggttt tggcaggagg tgcagatacc gcaatcggtt acattaattt
      241 ccgggatccc ggcgctgatt aactgttcca ggttggcgcg cgtcaggtcc agaaaaaccc
      301 tcccttttct cttgaccagc ccttcggaga aataaccgcg aaactcctct cctacttcat
      361 aacaacagtc ccggatacac gggccaaagc cgcaaataat atcccgcgga tggctattga
      421 acttattctt aaagatatcc agggcgctta aggcaatcct gtccttggtg cctttccaac
      481 ccgcgtgcag gatggcggct atccggttac gggtgtccag cataaacact gataggcagt
      541 ccgcgctgaa taccgctaaa ggcagtttct tccgggcgct gatcaggccg tcatatccgg
      601 ctacggcggt ttcgtattca aacgcccccc ggccggagtc ttttttttca gccgggaaga
      661 ccttattccc gtggacctgc tgtccgcaaa ccaggttttc tgccgctatg cctaactgtc
      721 ctaaaaaagc cccgcgattt tcctttaaag cgggattatc cttaaaaccc aaatccagct
      781 tgcccaggct aaaaccggca atgcaatctt gcgccttaaa actgtcaaaa agataactct
      841 ttaacaacat ctgccacgaa acagcgaaga accttcggta tgcttgataa tctggttcat
      901 catccggacg ctctctacag gatacgcccc ggccgcggtt tcagcggaaa gcatcacaaa
      961 gtccgtccca tccagcgccg cgttagccac atcggcaacc tcggcccggg tgggctgaaa
     1021 agactcggtc atgctttcca gcatctgggt ggcggtaatc accggttttt tcttctgatt
     1081 acatttacga ataatcatct tctggatcag cggcacttcc catatgggaa ggcagacccc
     1141 catatctccc cgggcaatca taatcatatc gctttcagcg attatttcat ctatattctt
     1201 tattgcctgg cggcattcta tcttggccac taaccggcaa tccgggattt tatcccggaa
     1261 cagcttcttt agggcccggc aatcgtattt atcccggaca aaagactggg cgatataatc
     1321 caccttattc tgaatgccaa actggatatc taatttatcc ttttcagtaa tccgcgggaa
     1381 cctcaaatgc ccgcggggga tattcacccc cttatgctcc ttaagcgcgc ccccgataac
     1441 tacctctgcc aggactttat ccttaaaaac cctcttggcc ttgagccgga tattgccgtc
     1501 gtcaataaaa atatcgctgt cggccgggat atccaggaag gaacctttat aatccaggct
     1561 ggcctcttct ttatttcccg ggatatcttt cctgactaac catatcttgg cccctttctt
     1621 aagctcaacc ggctggccgt ctttgagcct gccgacacgg atacgattac cttccaggtc
     1681 ctggagtatc tttatccggc ggcggtattt ctgattgacg cgccggacaa tatccaaacg
     1741 cctttgatgg gcaggatggt cgccgtgaga aaagttaagc cggcagacat ccaggccgga
     1801 aaggaccata ttccggatga ccgtctccgt tgagcttgcc ggacccaaag tggcaatgat
     1861 cttggtcctg ggcatcctta atcctgaaga taggccttga cgatcttctg ctcggaaagc
     1921 ggccggtcct ggccttcggt ccggcaattc tctattcttt ccaccacatc ataaccctcc
     1981 accacttccc cgaaaatggt atggcgcata ttcagccagg gagcaggggc caccgtgata
     2041 aagaactgac tgccgttggt attgggcccg gcattggcca ttgccaggag gcctttgcga
     2101 tcaaacttcg cgccggcaga gacctcatct tcaaaggcct taccccagac agactcaccc
     2161 cccataccgg tcccggcagg gtcgccaccc tgaatcataa aacc
//
LOCUS       DATDUB010000146         2912 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1103066, whole genome shotgun sequence.
ACCESSION   DATDUB010000146 DATDUB010000000
VERSION     DATDUB010000146.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2912)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2912)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2912
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1103066"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..508
                     /locus_tag="VJA84_02930"
     CDS             <1..508
                     /locus_tag="VJA84_02930"
                     /inference="COORDINATES: protein motif:HMM:NF012245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HLD41112.1"
                     /translation="NAAIEAARAGEAGRGFAVVAEEVRKLAEGSAEAVRKIGKLIKSI
                     QSETQEAVKAIQTSSKEVQEGRAEVAKITDVLNEINKSVQEVNELAKQISQAVRQQVQ
                     DNEQVAKAVTEVAGIARDSAATAEQVSSSTEEQTASMEEVSASAQELSNLSTGLKELV
                     GKFKLKTK"
     gene            555..1880
                     /locus_tag="VJA84_02935"
     CDS             555..1880
                     /locus_tag="VJA84_02935"
                     /inference="COORDINATES: protein motif:HMM:NF019268.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HLD41113.1"
                     /translation="MRKFAGNKIVVIAVLLLVSFAPSGLVFAGGSDETANALLERISA
                     LEKKVEDLNKKLEINSSVEAAKISDEVVQKKVEEVLRQKEETEGGLLKAVKDINVSGF
                     VDTSYTYNTQNPDTSSATSGGGANPARVFDTEANNFNVRAAEAVFEKLPPDEGGVGFR
                     TDLYFGSDAEVITPNGSARDQFDLEQAYIQLKPDGFKLPIGNWQWIKIGKFVTMHGSE
                     VIEAKDNWNFSRGLLFGYAIPFTHTGIRAGYQLSDSLAGYLGVNNGWDNVKDNNRGKS
                     VEAALGWTASDKLSFNLAGMFGPEQATNNHSQRALIDFITTYKPHPKWTLMLNVDYAH
                     EEDGVTAGKDGEWSGIAGYLKYDLNDKISLVSRTEFFSDPQGLRLTAGNPQDIWETTF
                     TFEVRPYKNFITRLEYRYDESSSNIFSPHTPPKSSDHQDTISLEAIYSF"
     gene            complement(1958..2452)
                     /locus_tag="VJA84_02940"
     CDS             complement(1958..2452)
                     /locus_tag="VJA84_02940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010939190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheW"
                     /protein_id="HLD41114.1"
                     /translation="MATEKQKEYQLVIFSIGDEEFGVDISQVREIVRLIPITYLPKAP
                     EFIEGVVNLRGQVVAVIDLAKRLVISSKQRGDNTRIIIVEIEGLTMGMIVDSVSEVLR
                     LSSEQIEDVPSVIQTEVQEHYIYGVGKLKDRLLVLLDLKKVLTPTEIQHVEKVVTSSA
                     KKEE"
     gene            complement(2604..>2912)
                     /locus_tag="VJA84_02945"
     CDS             complement(2604..>2912)
                     /locus_tag="VJA84_02945"
                     /inference="COORDINATES: protein motif:HMM:NF016398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheC"
                     /protein_id="HLD41115.1"
                     /translation="DLKDEMFQSALKEFANILCGSYIAAMSDMAKLNIMISTPNLAID
                     MVGAILDFIFIQIAQYADEALYIKTNLKVSGVAIEGLFLFFPDAESLSKLFETLGLNE
                     "
BASE COUNT          788 a          678 c          762 g          684 t
ORIGIN      
        1 aaacgcggcc attgaggcgg ccagggccgg cgaggcggga aggggttttg ccgtagttgc
       61 cgaagaggta agaaagctgg ccgaaggctc ggccgaggca gtgagaaaga tcggcaagct
      121 gattaagtcc atccagtccg agacccagga ggcggtcaag gccatccaga cctcatccaa
      181 agaggtccag gaaggccggg ctgaagtagc caagatcacc gatgtgctca atgagatcaa
      241 taagtcggtg caggaggtca acgaattagc caagcagata tctcaagcgg taagacagca
      301 ggtccaggat aacgaacagg tagccaaggc ggtaaccgag gtggccggga ttgcccggga
      361 ctccgcggcc actgccgaac aagtttcctc aagcactgaa gagcagactg cctctatgga
      421 agaggtctcg gcctcggccc aggagctctc taacctctct accgggttga aggagctggt
      481 gggaaagttt aaactgaaaa ctaaataact aaataactaa agaactgaag aaccaaaaac
      541 aaaaggagga aaaggtgagg aaattcgcgg gaaataagat tgtggtaatc gcggttttat
      601 tgttagtgag ttttgccccc agcgggttgg tatttgccgg cgggagcgat gaaaccgcca
      661 atgccttgct ggagaggatc tcggcattgg aaaaaaaggt ggaagacctg aacaagaaac
      721 tggagatcaa ttcttcggtt gaggcggcca agatcagcga tgaggtggtg caaaagaagg
      781 ttgaggaggt cttaagacaa aaagaagaaa ccgaaggcgg actgcttaag gcggtaaaag
      841 acatcaatgt cagcggtttt gtggacacca gctatactta taatacgcaa aatcccgata
      901 ccagctctgc tacttccgga ggcggcgcta atcccgccag ggtctttgac acggaagcga
      961 ataatttcaa tgtgcgcgcc gcggaagcgg tctttgaaaa acttcctcct gatgaaggcg
     1021 gggtgggttt ccgcactgac ctctattttg gttcagacgc ggaggttata actccaaatg
     1081 gttcagccag ggaccagttt gatttggagc aggcctatat ccagcttaag ccagacggtt
     1141 ttaagctccc aatcggtaat tggcagtgga ttaagatagg caagttcgtt actatgcacg
     1201 gttcggaagt aattgaggca aaagataact ggaattttag ccgcgggctt ctctttggct
     1261 atgccatacc atttactcat accggtatcc gcgccggata ccagcttagc gacagcttag
     1321 ccggctattt aggggtaaac aacggatggg ataatgtaaa ggataacaat agaggcaagt
     1381 ccgtagaggc ggcattggga tggacggcca gcgataagct ttcttttaac ttggccggga
     1441 tgtttggccc tgaacaggcc accaataacc attctcaaag ggcgcttata gactttatta
     1501 caacctataa accgcacccg aaatggaccc ttatgcttaa tgttgattac gcccatgaag
     1561 aagacggcgt aaccgcggga aaagacggcg aatggagcgg cattgccggg tatctgaagt
     1621 atgatttgaa tgataagata agcctggtca gcaggacgga attcttcagc gatccccaag
     1681 gcctgcggct taccgcgggc aatccgcagg atatttggga gacgaccttt acctttgaag
     1741 tccggccgta caagaatttt attacccggc tggaataccg ttatgatgaa tccagctcca
     1801 atatcttcag cccgcacacg cctcccaagt caagcgacca tcaggatacc atatccttag
     1861 aagcgatata ttccttctaa ttggcttcgg attagggaat aaaaaacaac ccccgcgaga
     1921 ttcgcggggg ttgttttttg ccttaacgct ctttagctta ctcttctttt ttggctgaag
     1981 aagtgactac tttttccaca tgctggattt cggtgggggt gaggaccttc ttgagatcca
     2041 aaaggaccaa taagcggtcc ttgagcttgc ctacgccgta gatgtagtgc tcctggacct
     2101 cggtctgaat gactgaaggc acatcctcaa tctgctctga agacagccgc aggacctcgg
     2161 aaaccgaatc cacaatcata cccatagtca gcccttcaat ctccacgatg ataatccggg
     2221 tgttgtctcc tctttgtttg gaggaaatca ccagcctttt ggccaggtca attaccgcga
     2281 ccacctgtcc ccttagattg accacccctt caatgaattc cggggccttg ggcaggtagg
     2341 taatgggaat aagccggaca atctcccgga cctggctgat atccaccccg aactcttcat
     2401 caccgatgga aaagattact aactgatact ccttttgttt ctctgttgcc atttgtccac
     2461 ctccttaatg agcgctaaac ttatggagcg agctttagcg agcgctcata agtttatgcg
     2521 cgaattaatc ccgaagcgtg cgaagtaaat ttcgcagaaa tttacgagcg cttacgcaag
     2581 ggaccgcatt actgttcttt tttctattcg tttaaaccca gtgtttcaaa aagcttgctt
     2641 aatgattccg cgtccggaaa gaataaaaac aggccttcta tggccacccc gcttaccttt
     2701 aaattggtct tgatgtaaag ggcctcgtcg gcgtattggg caatctggat aaagataaaa
     2761 tccaggatgg ccccgaccat atctatagct aaattcgggg tggagatcat aatgtttagt
     2821 ttagccatgt cggacatagc cgcgatatat gagccgcaga ggatattggc gaattccttt
     2881 agggccgatt ggaacatctc gtcttttaag tc
//
LOCUS       DATDUB010000147         3749 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1771070, whole genome shotgun sequence.
ACCESSION   DATDUB010000147 DATDUB010000000
VERSION     DATDUB010000147.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3749)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3749)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3749
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1771070"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..913)
                     /locus_tag="VJA84_02950"
     CDS             complement(<1..913)
                     /locus_tag="VJA84_02950"
                     /inference="COORDINATES: protein motif:HMM:NF014684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HLD41116.1"
                     /translation="MNKKALLVFLIFLAFPLFDHNQYHLDVLVNAGIYAILVLGLNVM
                     TGYCGLLNLGYAAFFAAGAYTYALLNVNWGWSFWMSLPACIACAGALGLVFGSCALRL
                     RGDYLAVVSLGFGEIIRIALNNLDSFTGGPNGLSVKHPVLGFAGKGFDFGINSIPYYY
                     LTLSAIMLVAAMAYRLSLSRLGRAWIAIKEDEVAAACMGINTGKLKLFSFCIGCAIAG
                     VSGWLFAGKQGFVSPESFDFITSIMIAAMLVLGGIGSISGCIVGAAALTILPELLQPL
                     QQYRMFLFGAVMIGMMLFRPQGLLGGAR"
     gene            complement(1176..2084)
                     /locus_tag="VJA84_02955"
     CDS             complement(1176..2084)
                     /locus_tag="VJA84_02955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013755513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0015658 - branched-chain amino acid
                     transmembrane transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HLD41117.1"
                     /translation="MSHTEIFVQQLINGLTIGMIYALIALGYTMVYGIIQLINFAHGE
                     IFITGAFLGLAVFSLFPCALRLNPALILILMFGAAMCACGLLGALIERAAYRPLRKSP
                     RLSCLITAIGVSFILQNLMMLAWGPVDKSFPAFFKHSAFILGPLRITFMQGFIIITSL
                     AMMSALHFFVRRTMLGKALRATSEDMTASRLMGIKVNRAISLCFLIGSGLGGAGGVMY
                     GMYYNSISFHDGYLVGIKAFTAAVLGGIGNVPGAMLGGVALGMLEGLGAGYLSSEWKN
                     VFAFLILVGLLLCWPSGILRKFRDEN"
     gene            complement(2081..3211)
                     /locus_tag="VJA84_02960"
     CDS             complement(2081..3211)
                     /locus_tag="VJA84_02960"
                     /inference="COORDINATES: protein motif:HMM:NF024850.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015658 - branched-chain amino acid
                     transmembrane transporter activity [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     substrate-binding protein"
                     /protein_id="HLD41118.1"
                     /translation="MRGKILILICCLLGMFSLGAKKPGVVKIGCVGPITGDQASLGLD
                     QLHALRIAVDEANAKGEIIPGYRLEIVSLDDQHNPSQAVAMAKRLAADPDVLAVVGHV
                     NSSCSLSAAPIYQNARMAQISPSSSNPEISRKGFDTFFRTCATDDIQAPQAAYFAFER
                     LKAKKVFVIDDKTTYGKGIADEFEKEIRRLGSAVLGHEGIMQGEKDFTPLLTKIKGLS
                     PDLIFFGGMYPEGALLVRQAKNLGLSSQWLGGDGIYVNSFIDLAKEDAEGIYCTFIGA
                     DVSSMESAKHYLETYTARFGRQRGPYSAYAYDAANIIIEAIRKAGKKDRSAVLAQVRA
                     TKDFPGVVGLTSFDQKGDSSIQLICVFQVRNQAFIYAVPAKE"
     gene            complement(3338..3466)
                     /locus_tag="VJA84_02965"
     CDS             complement(3338..3466)
                     /locus_tag="VJA84_02965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41119.1"
                     /translation="MRINYEQDWPVYILLMGVFAFYVYVVIHSKLQEKKNKGGNSK"
     gene            complement(3484..>3749)
                     /locus_tag="VJA84_02970"
     CDS             complement(3484..>3749)
                     /locus_tag="VJA84_02970"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007222972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HLD41120.1"
                     /translation="WKAKPVVASNVGGIPLQVKHKYSGLLCHSIEGAAFAIKQLLNNP
                     EYAGKLGDNGREHIRNNFLITRHLRDYLLLFLSLYHKEDIVYL"
BASE COUNT         1069 a         1020 c          826 g          834 t
ORIGIN      
        1 tccgcgctcc tcccagtaaa ccttgaggcc tgaacaacat catcccaatc atcaccgcgc
       61 caaagagaaa catccggtat tgctgtaacg gctgtaacag ctccggaagt atagtcagcg
      121 ccgcagcgcc cacgatacaa ccggaaatac ttccaatgcc tcccaagacc agcatagccg
      181 cgatcattat ggaagtaata aaatcaaaac tctccggaga gacaaaaccc tgctttcccg
      241 caaagagcca tccggaaacc ccggctatcg cgcagccaat acaaaaggaa aagagcttga
      301 gcttgccagt attaattccc atacaggcgg cagccacctc atcttcctta atggcaatcc
      361 aggcccggcc cagacgggaa agcgacaggc gataggccat cgccgccaca agcataattg
      421 ccgataaagt aagataataa taaggaatac tgttaatgcc aaagtcaaag cctttgccgg
      481 caaacccaag gacaggatgc ttaacgctca atccgttggg gcctccggtg aaggaatcca
      541 ggttattaag cgcgatacgg ataatttcgc caaaaccaag gctgactacg gccagataat
      601 ccccccttag cctaagggcg caggaaccaa acactaaacc caatgccccg gcgcaggcaa
      661 tacaggcggg aagactcatc caaaacgacc agccccaatt cacattaagc agggcgtaag
      721 tatacgcccc ggcggcaaag aaagctgcat agcctaaatt aagcagtccg caatatccgg
      781 tcatcacatt cagccccaat accaggatag cgtaaatccc ggcgtttacc aggacatcca
      841 gatgatattg attatggtca aataaaggaa aggccagaaa gattaaaaaa acaagcaagg
      901 cttttttatt cacttgaaaa tcccatagtt aatgacaaat gacaaaatta aaagctcaag
      961 ataaattcaa aatccaaagg tcaaaacttg aggttggttt tgtcatttga attttagtat
     1021 tattttgaat ttttggcttt gacctttgac attaatcttc ttgaggacag gcctcccgcg
     1081 cgcggtaatt atagggacgg ttctctctaa gataactata tttagagaac cgtccctgct
     1141 ttacgggagg actggccaca ggcctagaac tcggcctaat tttcatcgcg gaacttcctt
     1201 aatatacccg agggccagca taaaagcagg ccgactaaaa tcaaaaaggc aaacacattc
     1261 ttccattccg atgagaggta tccagcgccc aatccttcca gcatccctaa ggccacccct
     1321 cccagcattg cccccgggac attgcctatg cctcccagca ctgccgcggt aaaggccttg
     1381 atccccacca gatagccgtc gtgaaaactg atgctgttat aatacatccc atacatcact
     1441 ccccccgccc ctcccaggcc cgaaccaatc aaaaaacaca ggctgattgc ccggttcacc
     1501 ttaatgccca taagcctgga ggcggtcata tcttccgagg tggcgcgcag ggccttgccc
     1561 agcatagtgc gcctgacaaa aaaatgcaag gcactcatca ttgccaggct ggtaatgatg
     1621 ataaagcctt gcataaaggt aatccgcagc ggacctaaga taaaagccga atgtttaaaa
     1681 aacgcgggga aactcttatc caccggcccc caggcgagca tcatcaggtt ctgcaggata
     1741 aaggaaacgc ctatagcggt aatcaggcag gagagcctgg gtgacttgcg caatgggcgg
     1801 taggccgcgc gctcaatcaa agcgcccaaa aggccgcagg cgcacattgc cgcgccaaac
     1861 atcaagatga gaatcaaggc ggggttaagt cttagcgcgc agggaaaaag gctgaatacg
     1921 gccagcccca ggaacgcccc ggtgatgaag atctcgccgt gggcgaaatt gatcaactgg
     1981 ataatcccat agaccatcgt atagcccagg gctatcaggg cgtaaatcat cccgatggtc
     2041 aaaccattga tcaactgctg gacgaatatt tcggtatggc tcattcctta gccggtacgg
     2101 catagataaa ggcctgattc ctcacctgaa agacacagat aagctgaatg ctggaatcac
     2161 ccttttgatc aaagctggtt aagcccacca ccccgggaaa atccttggtc gcgcgcacct
     2221 gggccaggac agcggaacgg tctttttttc cggccttgcg aatcgcctct atgatgatat
     2281 tggcggcatc ataggcataa gcgctatacg gccctctttg ccggccaaaa cgggcggtgt
     2341 aggtttctaa ataatgcttc gcgctttcca tagagctgac atccgccccg ataaaggtgc
     2401 aatagatccc ttcggcatcc tctttggcca ggtcaataaa ggagttgaca tatatgccgt
     2461 ctccacccag ccattgcgag cttaaaccca ggttctttgc ctgccggact aacagcgccc
     2521 cttccggata catccctcca aagaaaatca ggtccgggga aagccccttt atcttagtca
     2581 ataacggggt aaagtccttc tccccctgca taatcccttc atgccccagg acggctgaac
     2641 ccaggcggcg gatctctttc tcaaattcat cggctatgcc cttgccgtag gtagtcttat
     2701 cgtctatgac aaagaccttt ttggccttta aacgctcaaa ggcaaaatag gccgcttgag
     2761 gcgcctggat gtcatcggtg gcacaggtcc tgaaaaaagt gtcaaagcct ttgcgggaaa
     2821 tctcgggatt agaggaagaa ggagagattt gggccatcct ggcattctga taaatcgggg
     2881 ccgccgagag actgcaggaa gaattgacat gcccgactac tgccaggaca tccgggtcag
     2941 cggctaagcg tttggccata gccaccgcct gggaagggtt gtgctggtcg tctaaggaga
     3001 caatttccag acggtatccg gggataattt cccccttagc atttgcctca tccaccgcga
     3061 tccgcagggc atgcagctgg tccagcccca ggctggcctg gtccccggta atcggcccca
     3121 cacaaccaat cttaaccacc cccggcttct tcgcccccag gctgaacatc cccaggagac
     3181 aacagattaa aatcagtatt ttccccctca tctctaccgt cctttctttt aatcaattca
     3241 ataatcttga ttttaacaga attataaggt gtgtcaagaa cggcaagaag acaatttatt
     3301 tcttagagaa atgacataaa acattctttt agaaagctca ttttgagttg cctcctttat
     3361 ttttcttttc ctgcaattta ctatgaatca ccacatacac ataaaacgca aaaactccca
     3421 tcaacaaaat ataaaccggc caatcctgct cataatttat gcgcataaaa ttcctctcct
     3481 ttcttacaaa tagacaatat cttctttatg gtataaagaa agaaacaaca acagataatc
     3541 ccgtaaatgg cgggtaatca gaaaattgtt tctgatatgc tccctgccgt tgtctcccaa
     3601 tttcccggcg tattcgggat tgttaagcag ttgtttgatg gcaaaggcag ccccttctat
     3661 agaatgacaa agaagtcctg aatatttatg ttttacttgc agcggtatgc cgcccacatt
     3721 ggaagccacc accggcttgg ctttccaga
//
LOCUS       DATDUB010000148         4306 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_2119398, whole genome shotgun sequence.
ACCESSION   DATDUB010000148 DATDUB010000000
VERSION     DATDUB010000148.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 4306)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4306)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4306
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2119398"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..228
                     /locus_tag="VJA84_02975"
     CDS             <1..228
                     /locus_tag="VJA84_02975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020257852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylyltransferase"
                     /protein_id="HLD41121.1"
                     /translation="LGVLQANEVLKFILGAGQLLAGRLLIFNALDSTFRTVKVPKDKD
                     CPACSDHPVITKLIDYQEFCSLKAKKDCSIK"
     gene            242..481
                     /locus_tag="VJA84_02980"
     CDS             242..481
                     /locus_tag="VJA84_02980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020257851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NIL domain-containing protein"
                     /protein_id="HLD41122.1"
                     /translation="MARRIVKLTFPQKLVKEPVTFQMAKKYNILPNIRRAKVTESVGE
                     LVLELDGKEDDLDKGVEFLKKSGVIVESVVGNVLE"
     gene            481..1197
                     /gene="rlmB"
                     /locus_tag="VJA84_02985"
     CDS             481..1197
                     /gene="rlmB"
                     /locus_tag="VJA84_02985"
                     /inference="COORDINATES: protein motif:HMM:TIGR00186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008173 - RNA methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HLD41123.1"
                     /translation="MRIYGRNSVLERLKANSKSVKSLLLEKEQELREFERVAKSKNIP
                     VRYFSGREFEKISRNIRAQGVIAEVEDFKYSDLEDVLSQHRERPPTILFLDNLNDPQN
                     LGNILRTAACFGRFVIVLPKHDSVEVTEAVLRIASGAENYVPIAQVTNLSAVISYAKK
                     QGYWISGAVVEGGEPLGRARLNFPLGVVIGSEAKGIRQGLLKQLDFSFSIPMRGARLS
                     FNVATAAAIFCYEASRQRGL"
     gene            1194..2249
                     /locus_tag="VJA84_02990"
     CDS             1194..2249
                     /locus_tag="VJA84_02990"
                     /inference="COORDINATES: protein motif:HMM:NF015948.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF362 domain-containing protein"
                     /protein_id="HLD41124.1"
                     /translation="MKSDVYLARVKLGDKGSRAAALKRLLAHCGQLLKYKKNEIVPLK
                     LTIGDSPCVYNVSPDLVKIIVSEVKKQGAKPFLFDTSVIYQGERQNAVSHLNLAQYKG
                     FSHSRVGAPFIIADGLLGQDGREYETGSPLIPKIKVPSFVGMLDSLVVLTHATGHIVS
                     VYGGAIKNVAMGMSCRPTKQLQHSSLKPSIIEKKCSACGCCIAVCPVKAISYHKDKAF
                     INQELCVGCAECICACNFDAVSINWKEDPRVFCRRMADTAKTILSKFKNKIFITLALD
                     ITKECDCISTKDEKMISEDIGILASTDILSLDKAVVDLINQDHHRHFKDAGVYEDMFS
                     YGSTKGLGNLEYNLIKI"
     gene            2327..3082
                     /locus_tag="VJA84_02995"
     CDS             2327..3082
                     /locus_tag="VJA84_02995"
                     /inference="COORDINATES: protein motif:HMM:NF013232.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41125.1"
                     /translation="MRQCLMSGSDPLFVKDFEVLFGIPKQELKRTCVLMPFISKDALK
                     GLGIRRFVRGKLYGGGNSRDFTLIHSGLGPALTGDALLYLKDTGCKNVILFGSCGLLT
                     QNNGLGIGSLISPLKAYSLESFSRMLSNQDIALDVYYPDKKLLEDFVNSANGAIKQIS
                     CATVSSLKLEEERKDTWLKQGIEAVDMECSAFFAAASHSGLKSMAIFYVTDIIGVKPF
                     YQNMGLKDKAKIFLARKRAAGILCKFIQENLPA"
     gene            3049..>4306
                     /locus_tag="VJA84_03000"
     CDS             3049..>4306
                     /locus_tag="VJA84_03000"
                     /inference="COORDINATES: protein motif:HMM:NF045247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41126.1"
                     /translation="MQVYSRESSRLKSAETIVRENFPRFGVNKKQEITRLLYEISKWE
                     GIEPGEILGPEELSAPYPRIKKILLQRRYPLAYQDQSNLKTYLPKLQFQAHPLNSYLA
                     ENKKFYPRKVFIEKPVISSGLAARFKGLFPKADFEEIESFKAYRAKNRNFRIGDYNKR
                     QETVFIVRENYDFFKKCPCTKCASSCGYHIFNLGFGCIYECAYCYLQEYTNTPGIILP
                     ANIGDFFNAFNAYKREGMRIGSGEFSDSLALDRWTGYSLELIDFFKQHPQVSFEFKTK
                     SVEIDNLLKTEHSGNIVVSWSLNPQTVIDGNEFFSSSLEERLTAAKRCVDAGYRVGFH
                     FDPVIYFSGWQDEYGRLIEALFAGIKPENIAWISLGSLRFRPELKTVIENRFPDNKIL
                     DEELLLGYDNKLRYSDKIRYGVYSYMI"
BASE COUNT         1145 a          942 c         1110 g         1109 t
ORIGIN      
        1 ttgggtgtct tgcaggccaa tgaggtcttg aagttcatcc tgggggcggg ccagctcttg
       61 gccgggaggc tgttgatttt taacgccctg gattccactt tccggacggt aaaagttcct
      121 aaagacaaag actgtccggc ctgttccgac catcctgtaa ttaccaagct tattgattat
      181 caggagttct gctctctgaa ggctaaaaaa gattgttcca taaaatagat aggagaagat
      241 aatggcaaga cgaatcgtga aacttacctt tccccaaaag ttggtcaagg agcctgtgac
      301 ctttcagatg gccaagaaat acaacattct gcccaatatc cgccgggcca aggttaccga
      361 gagcgtgggc gagctggtcc tggaattaga cggcaaagag gatgacctgg ataagggagt
      421 tgagttcttg aagaaatccg gggtcattgt ggagtctgtt gtcggaaatg tccttgagta
      481 atgagaatat acggcagaaa ttcggtattg gagcggctga aggccaattc taagagcgta
      541 aagagcctgc ttttggaaaa ggagcaggaa ttaagagagt ttgaacgcgt tgccaagtca
      601 aaaaacatcc ctgtccgcta ttttagcggg agggaatttg aaaagatctc ccgcaatatc
      661 cgcgctcaag gggtaattgc cgaagtggag gattttaaat attccgacct ggaagatgtt
      721 ttaagccagc atcgggaaag gccgccgact attttatttt tagataatct aaacgacccc
      781 cagaatttag gaaatatcct gcgcactgcc gcctgcttcg gcagatttgt gattgtcctg
      841 cctaagcacg attcggtgga ggtcaccgag gcggtcttaa gaatagccag cggagcggaa
      901 aactatgtgc cgatagccca ggttaccaac ctgtccgcgg tgataagcta cgccaagaaa
      961 caagggtact ggatttccgg agcggtagta gaaggcggag aacctctggg ccgggcaagg
     1021 ttgaatttcc ccttaggggt ggtgattggc tccgaggcca aaggcatacg ccagggcctg
     1081 ctcaaacagc tggatttcag cttcagcatc cctatgcgcg gggccaggct ctcttttaat
     1141 gtggccaccg ccgcggccat attttgttat gaggcctcaa ggcaaagggg gttatgaaaa
     1201 gcgatgtcta tctggccagg gtcaagcttg gggacaaagg ctcaagggcc gcggccctaa
     1261 agaggctttt ggcccattgc gggcagcttc tgaaatataa gaagaatgaa attgtcccgc
     1321 taaagcttac tatcggggat tctccctgcg tgtataatgt cagcccggat ttagtcaaga
     1381 taattgtttc ggaggtaaag aagcaggggg ccaaaccttt tctctttgac acctcggtta
     1441 tttatcaggg agagcgccag aacgcggtta gtcacctgaa tttagcccag tataagggct
     1501 tttcccattc ccgggtgggc gcgccgttta ttattgccga tgggctcctg ggccaggacg
     1561 gccgggaata tgaaaccggt tcaccactca tccctaagat taaggtccct tcttttgtgg
     1621 ggatgttaga cagcctggtg gtcttgaccc atgccaccgg gcacatcgtt tccgtctacg
     1681 gcggcgcgat caagaatgtg gctatgggga tgtcctgccg ccccaccaaa cagctccaac
     1741 attcttcgct taaacccagc atcattgaga aaaaatgctc tgcctgcggt tgttgcattg
     1801 cggtctgccc ggtaaaggct atatcttacc acaaggataa ggcctttata aaccaggagc
     1861 tttgcgtagg ctgtgccgaa tgtatctgcg cctgtaattt tgatgccgtg tccatcaact
     1921 ggaaagaaga cccccgcgta ttctgccgcc gaatggctga taccgccaaa accatcctct
     1981 ctaaattcaa aaataaaatc tttattaccc tggccctgga tatcaccaag gaatgcgact
     2041 gcatatccac taaggacgag aaaatgattt ctgaagatat cggaattttg gcttctaccg
     2101 atatcttaag cttagataag gcggtagtag acctgataaa ccaggaccac caccggcact
     2161 tcaaagacgc cggcgtatac gaggacatgt tcagctacgg ctcaaccaaa ggcctgggga
     2221 atttagaata taacctgata aagatataag tatatgtcca ggtctgactc cttctttcag
     2281 cagggttaat cggaggccac aatactaatt gttttggcag agatagatga ggcaatgtct
     2341 aatgtccggg tctgacccct tgtttgtgaa agattttgag gttctctttg gcatccctaa
     2401 gcaagaatta aaaaggacct gcgtcttgat gccttttatt tccaaggatg ccttgaaggg
     2461 gttggggata cggcgctttg taagaggtaa attatacggc ggggggaaca gtcgggactt
     2521 taccctgatt catagcggcc tggggccggc tcttaccggg gatgcgctgt tgtatttgaa
     2581 ggatacgggc tgtaagaatg tgattctctt tggctcttgc ggcctgttga cccagaataa
     2641 cggcttgggc atcggcagtc taatcagtcc gctaaaggct tattctttag aaagctttag
     2701 ccggatgctt tctaatcagg atattgcttt ggacgtctat tatccggata aaaaactctt
     2761 agaagatttt gtcaactctg ctaatggtgc aataaaacaa atctcctgcg ccacagtttc
     2821 ctccttgaag ctggaggaag aaagaaaaga tacctggttg aaacagggta tagaggcagt
     2881 agatatggaa tgttccgcct tttttgccgc tgccagccac agcggcctta agtcaatggc
     2941 tattttctat gttactgata tcattggggt taagcctttt tatcagaata tggggttaaa
     3001 ggataaagcc aaaatattcc tggccagaaa aagggccgcc ggtattttat gcaagtttat
     3061 tcaagagaat cttcccgcct gaaatccgcc gagacaatcg taagagaaaa ttttccgcga
     3121 ttcggggtga acaagaaaca ggaaataacc cgcctgcttt atgaaatctc taaatgggaa
     3181 gggattgagc ctggggagat ccttggaccg gaagaattat ccgcgcctta cccgcggatt
     3241 aagaaaatcc tcttacagcg gcgctatccc ttagcctatc aggaccaatc caacctaaaa
     3301 acctatctgc ctaaactcca attccaggcc catccgctca atagctattt agcggagaat
     3361 aaaaagtttt atcctcggaa ggtctttatt gagaagccgg ttatttcctc gggcctggcc
     3421 gcgaggttca agggcctttt tcctaaggcg gattttgagg agatagagtc gtttaaggcc
     3481 tatcgggcaa aaaatcgtaa tttcaggata ggggattata ataaaagaca ggaaacggtt
     3541 tttattgtcc gggaaaacta cgacttcttc aaaaaatgcc cctgcaccaa gtgcgcctca
     3601 tcctgcggct atcatatttt taaccttggc tttggctgta tctatgagtg cgcctattgt
     3661 tacctccagg aatacaccaa taccccgggc ataatcctgc cggcaaatat cggggatttt
     3721 tttaacgcct ttaacgctta taagagagaa gggatgcgta ttggcagcgg ggagtttagc
     3781 gattctttag ccttagacag gtggacggga tactcgcttg agttgataga cttctttaag
     3841 caacaccccc aggttagctt tgagtttaag actaagagcg tggaaataga taacctgctt
     3901 aagacagaac acagcggcaa tatcgtagtt tcctggagcc tgaatcccca gacggtgatt
     3961 gatggaaacg agtttttttc ctcaagcctg gaagaaaggc tgacggcggc aaaaaggtgc
     4021 gttgacgccg gataccgggt gggttttcat tttgacccgg ttatttattt ctccggctgg
     4081 caggatgaat acggacggtt gatagaggcc ttatttgccg ggataaaacc ggaaaatata
     4141 gcctggataa gcttaggctc attgcgcttc cggccggaac taaagacggt gatagaaaac
     4201 cgctttccgg acaataaaat ccttgatgaa gagctgttgt tggggtatga taataaatta
     4261 aggtattcgg ataagatacg ttatggcgta tatagctata tgatta
//
LOCUS       DATDUB010000149         2083 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_440967, whole genome shotgun sequence.
ACCESSION   DATDUB010000149 DATDUB010000000
VERSION     DATDUB010000149.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2083)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2083)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2083
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_440967"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(25..438)
                     /locus_tag="VJA84_03005"
     CDS             complement(25..438)
                     /locus_tag="VJA84_03005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41127.1"
                     /translation="MKPIAAGYIIGFFLFIPGFLSRAQAQTVKTEYAAFNLRDPFAKQ
                     LPGAAPVVKPPEAVLVKEKIVPPAIVVEGLVAGGPVPQVIIGGNIFRIGDKVQEAAIT
                     AITKEGIEVVYKLEMFSYSAPSRAMVIKREEENDK"
     gene            complement(435..971)
                     /gene="pilO"
                     /locus_tag="VJA84_03010"
     CDS             complement(435..971)
                     /gene="pilO"
                     /locus_tag="VJA84_03010"
                     /inference="COORDINATES: protein motif:HMM:NF016253.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0043107 - type IV pilus-dependent motility
                     [Evidence IEA];
                     GO_process: GO:0043683 - type IV pilus assembly [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type 4a pilus biogenesis protein PilO"
                     /protein_id="HLD41128.1"
                     /translation="MTLSINNINLQAILKNKDKLIFLVILILALLAASRIYKIQKDKT
                     AALKEEIAIQEQRIALALELAGLDKKISQDAGPYLKKEPAWNARSFHEFASKAEVKVV
                     SVSPAQEQNSDFSSAALFELALKGSYHNLAKFISILESQKDILQIESLSLKSIDNPAE
                     PNILSLVMTVGITYIKGQ"
     gene            complement(1057..>2083)
                     /locus_tag="VJA84_03015"
     CDS             complement(1057..>2083)
                     /locus_tag="VJA84_03015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41129.1"
                     /translation="DLKQSIAFMAIDDDLDMEFSIVNAGFPCFSRDVRLARAQDAPST
                     GSGAEVVSQERLTSELRVSLGYFRRQFSGSSVDKIILVAKNANPGLISELSKNLSIEV
                     QLLELDKNSALNTLTDLDALKAGAVGLRDTIKVNLSVDLLKSRKEYRLSAPKDISTPA
                     PAFTLSFDTVKRPLLLAAAVVGAAYGFPLPEQFSTAKNLERIKFEAESALAPANLGAL
                     DLDGLRQKRAGYKKKLLFIQELIASRAYLTVSFNVLPETVRTGLWIEQFDLSAPAKDK
                     VKSLLLKGAIYLGDKAQEEEAIADFLKKLKASPDFMSGLSRLEITSTRNTQSNGYKIT
                     VFEISGS"
BASE COUNT          554 a          531 c          435 g          563 t
ORIGIN      
        1 aaagtcagaa ctctcatccg gattttattt atcattttct tcctcccttt taatcaccat
       61 cgccctggat ggcgcagaat atgaaaacat ctctaattta taaacaacct caattccctc
      121 tttggttatg gcggtaatag ccgcctcttg caccttgtcc ccaattctaa aaatattacc
      181 cccgataatc acctgaggca ccggcccccc ggccaccagc ccctccacaa caattgccgg
      241 aggcacgatt ttttctttaa ccagaacagc ttccggcggc ttaaccaccg gcgccgcccc
      301 gggaagctgt ttcgcgaaag gatcgcgtaa attaaaagcg gcatattccg tcttcacggt
      361 ttgagcttgg gcccgggata agaatccagg gataaataag aaaaaaccga ttatgtatcc
      421 ggccgcgata ggtttcattg tcccttaata taggtaatgc cgactgtcat aaccaaagat
      481 agaatatttg gttcagccgg gttatcaatg cttttaagcg aaaggctttc aatctgcagt
      541 atatctttct gcgattctaa aatgcttata aatttagcca ggttatgata actgccttta
      601 agcgccagct caaacaatgc cgcgctggaa aaatcactat tttgctcttg agcgggagaa
      661 accgaaacca ctttcacttc agctttagac gcgaattcgt gaaaagaccg cgcgttccag
      721 gccggttctt tcttaagata cggcccggcg tcctgagata ttttcttatc cagtccggcc
      781 aactccagcg ccaaggcgat tctttgctct tggatggcta tctcttcttt taaggccgcg
      841 gttttatcct tttggatttt atatatccgc gaggcagcca acaaggccag aattagaatc
      901 accaaaaaaa taagcttatc cttatttttt aatattgcct ggagatttat attgttaatt
      961 gataaagtca tggtctttac cccgccccgc ctccccttgg taaggggagg atttctaatc
     1021 ccctccttta caatgagggg taggggaggt atttttttaa ctgccggaaa tttcaaaaac
     1081 cgtaatcttg tatccgttgc tctgggtatt acgggtagag gttatctcca ggcggcttaa
     1141 gccggacata aaatcagggc tcgctttaag cttttttaaa aaatcagcta ttgcctcttc
     1201 ctcttgcgcc ttatccccca gataaatcgc gcctttaagt aaaagagatt ttaccttatc
     1261 ctttgccgga gccgagaggt caaactgctc aatccataag ccggtccgga ctgtctcagg
     1321 cagaacatta aaagacacag tcaaataagc ccgggaggca attaattcct ggataaataa
     1381 aagttttttc ttgtatcccg cccttttctg gcgcaggcca tccaaatcca gggcacctaa
     1441 gttagccggg gccaaggcgc tttcagcctc aaattttatg cgctctaaat tcttggcagt
     1501 gctgaactgt tcgggtaaag gaaaaccata cgccgccccc actactgccg ccgccagcaa
     1561 taaaggccgc ttaaccgtat caaagctaag ggtgaatgcc ggagcgggag ttgatatatc
     1621 tttaggcgcg ctcaagcggt attctttgcg cgattttaat aaatctacgg ataaatttac
     1681 ctttatggta tctctgaggc ctacggcacc ggccttaagc gcgtccaagt cagtcaaggt
     1741 gtttaaagcg ctattcttat ctaattccaa taactgcacc tctatgctta agtttttgct
     1801 caattcggaa attaacccgg gattagcatt tttagccacc aggataatct tatctaccga
     1861 agagccggaa aattgccggc gaaaataacc caaggaaacc ctgagctcgc tggttaaacg
     1921 ttcttgagaa accacctccg cgccgcttcc cgtggaaggc gcgtcctggg cccgggcgag
     1981 ccggacatcc cggctaaaac agggaaaacc cgcgttcact atggaaaact ccatatccaa
     2041 atcatcatca atagccataa acgcgataga ctgcttaagg tca
//
LOCUS       DATDUB010000150         4025 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_764774, whole genome shotgun sequence.
ACCESSION   DATDUB010000150 DATDUB010000000
VERSION     DATDUB010000150.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 4025)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4025)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4025
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_764774"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..877)
                     /locus_tag="VJA84_03020"
     CDS             complement(<1..877)
                     /locus_tag="VJA84_03020"
                     /inference="COORDINATES: protein motif:HMM:NF013673.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase modulator"
                     /protein_id="HLD41130.1"
                     /translation="MHKDLLRSMIHKLKSKGPEYADIRWVKRQHENISAFNYNVENLS
                     SHIDEGYGIRVLYNGAWGFACGSIFEEKAADKSIRLAIEIAKASSLANQEKITFPQQP
                     PVHASYASSYQINPFEVSQETKLHYLFYTNEVLLKSAKIKFAQSALDFYRTDKFFINS
                     EGSEIEQSFIESGGFLEASASIGRKTQKRSYPASHHSQLRQAGYEYIKELDFPGNAPR
                     VREEAIMLLNAPDCPIGETTIILDGGQTALQVHESCGHPVELDRVLGSELSYAGGSFL
                     TLEKYGKFRYGSKSVN"
     gene            1046..2458
                     /locus_tag="VJA84_03025"
     CDS             1046..2458
                     /locus_tag="VJA84_03025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41131.1"
                     /translation="MRRDIVGKLNKYFASLKEEERDRISRILKEEIQRLNIKYLSDSG
                     KARDIQLVLRPWFIQPKEMRFLHRLIYSFKAAHHKLCRMYLRNRDIQEIMPLMPDEKK
                     WFGLINKDKFQEYQAVFGRWDTNVSFDERDNIRGIKFLETNTVGIGGIHYIPVVSEGI
                     REILKLKFEKEIRPYRLRFQADPRDLLAEEIKRHARLIGRGDLNVVFLENRDYLGGTV
                     ELPELTKYFLKKGIKAILADPRDLRLKQGEIYYLDTNIDIIYRDSELQELIDIERKGH
                     NMAVLKQAFVNNQVISSIAGELDHKSSFEIFTNPEFAGLFTAGERTLFRKYLPWTRVI
                     KERKTPGIDSRRIDLVPYVLKNQERLIIKPSRAYGGKGVMIGRLTEKSKWADYVVKAS
                     RPPGGYVAQDAVDIREETFPVFSGSGKIRFEKFYSVSGFVVTPGAIAVLGRFSKDMVV
                     NVARKGGIIPAFILSVIGRD"
     gene            2670..3680
                     /locus_tag="VJA84_03030"
     CDS             2670..3680
                     /locus_tag="VJA84_03030"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020813902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009331 - glycerol-3-phosphate
                     dehydrogenase complex [Evidence IEA];
                     GO_function: GO:0047952 - glycerol-3-phosphate
                     dehydrogenase [NAD(P)+] activity [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0046167 - glycerol-3-phosphate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HLD41132.1"
                     /translation="MLKLNRNAKITILGDGGWGTALAVLLAKKGLRVCLWGAFKENIQ
                     AISRHKTNKKFLPGVKVPASVDLAWDLALAIKEAELIVLAIPSQFLRQVLKRIKGLDF
                     SKVYFLSVVKGIENQTLRRVSQVIKEELGDDIELAVLSGPTIALEAAKGIPTTAVASS
                     ENMLLAKAIQHIFTTNRFRIYVNPDMAGVELGGSLKNVIAIACGISDGLGFGTNTKAA
                     LLSRGLAEISRLGIAMGARKETFGGLSGLGDLVTTCISRDSRNRLVGERIGQGKRLKE
                     ILANMNNVAEGVGTAKSAYLLGRKHNLPMPISAEVYKVLYKNKDPLKAVNDLMSREVK
                     EE"
     gene            3690..3767
                     /locus_tag="VJA84_03035"
     tRNA            3690..3767
                     /locus_tag="VJA84_03035"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3725..3727,aa:Pro,seq:ggg)
BASE COUNT         1032 a          854 c         1107 g         1032 t
ORIGIN      
        1 tattcactga ttttgagccg taacgaaatt tcccgtattt ctccagggta agaaagctcc
       61 ctccggcata gcttagctct gaacccagaa cccggtctaa ttccaccggg tggccgcaag
      121 actcatgcac ctgcagggcg gtttggccgc cgtctaagat aatggtggtt tctcctatcg
      181 ggcagtccgg ggcattaagg agcataatcg cctcttccct cactctgggg gcgttgccgg
      241 gaaaatccaa ctccttaata tattcgtatc cggcctggcg caactgggag tgatgggacg
      301 ccgggtagga acgcttctgg gttttcctgc caatgctggc cgaggcctcc agaaatcctc
      361 cgctttcaat aaatgattgt tctatctctg aaccttcgct attgataaag aatttatccg
      421 tgcggtagaa atccagggcg gactgggcga attttatctt cgccgacttt aggaggacct
      481 cattggtata aaagagatag tgcagtttag tctcctggga gacctcgaag gggtttatct
      541 ggtagcttga ggcataactg gcatggactg gcggttgttg cgggaaggtt atcttttcct
      601 ggtttgccaa actggaggcc ttggcaatct caattgccag cctgatgctc ttgtctgccg
      661 ccttttcctc aaagatactg ccgcaggcaa agccccaggc cccgttatag agaacccgta
      721 tgccgtagcc ttcatctata tgagaggaga ggttttccac attgtaatta aaggccgaga
      781 tgttttcatg ctgtcttttt acccagcgga tatccgcgta ttccgggcct ttggatttca
      841 gtttgtgaat cattgagcgc aggaggtcct tgtgcatagc atttaatata gcactcttga
      901 tttgaccctg caataccttt gtaacaggat actgattgtg cgggtaaaaa tgggtcctgt
      961 ccccgccaag tcggggccac ccatttttac tccagcatat ataccttttg ctattttcat
     1021 tttctctatt ataataactc ttaatatgag aagagatata gtcgggaaac ttaataaata
     1081 tttcgcctct ttgaaagagg aagagagaga ccggatttcc cggatattga aggaagaaat
     1141 ccagcgctta aacatcaagt atttgagcga ttccggaaag gcgcgggata tccaactggt
     1201 gcttaggccc tggtttatcc agccgaaaga gatgagattc cttcaccggc tgatatatag
     1261 ctttaaggcc gcccaccaca agctttgccg gatgtatctg cgtaaccggg acatccagga
     1321 aattatgccc ttaatgccgg atgagaagaa atggtttggc cttataaata aagataaatt
     1381 ccaggaatat caggcagtct ttggccgctg ggataccaat gtctcttttg acgaaaggga
     1441 taatatccgg gggataaaat tcctggagac taataccgtg ggtatcgggg ggatccatta
     1501 catcccggtt gtctccgagg ggataaggga gatactgaag cttaagtttg agaaggagat
     1561 ccggccttac cgcttgagat tccaggctga cccccgggac ctgctggcag aggagataaa
     1621 acgccatgcc cggcttatcg gccgcgggga cttaaatgtc gttttcctgg aaaaccgcga
     1681 ttacttaggc gggacagtgg agcttccgga gctgaccaag tattttctta agaaggggat
     1741 taaggccatc ctggctgacc cccgggacct gcgtctaaaa cagggagaga tctattacct
     1801 ggacactaat atagatataa tttaccgcga ctccgagctt caggaattaa tagacattga
     1861 aaggaaaggc cacaatatgg cggttttgaa gcaggccttt gtgaataatc aggtgatttc
     1921 ttccatcgcc ggggagctgg accacaagag cagttttgag atatttacca atcctgaatt
     1981 cgcggggttg tttactgcag gggaaaggac gcttttcagg aaatacctgc cctggaccag
     2041 ggtgatcaag gaaagaaaga ctcctggcat agattcccgc aggatagacc ttgtcccgta
     2101 tgtcttaaag aaccaggaac gcttgatcat taagcccagc cgggcctatg ggggtaaggg
     2161 ggtgatgatt gggcgattga cggaaaagtc aaagtgggca gactatgtgg ttaaggcctc
     2221 gcgtccaccc ggggggtatg tggcccaaga tgcggtggat atccgtgaag aaacttttcc
     2281 ggtttttagc ggctccggaa agattaggtt tgagaagttt tattccgtat ccgggtttgt
     2341 ggttacgccc ggggctatcg cggttttagg ccggttttcc aaagatatgg tggtgaatgt
     2401 ggccagaaaa ggggggatca tcccggcttt tattttgtcg gtgattggca gagattaaaa
     2461 gcgaggcatc aatcaagctg aaaattgtat agttagactg cggcaggtat tccgtgctca
     2521 aacatcctcg gcgtttttct aaataactat attatggaat gacgcctgcg gaactgcgcg
     2581 cggaacacct gccgcagtct gacttaagcc aacgatacag gtgaattata aattgacaga
     2641 gggggattta ttggttaata tagtaaaata tgcttaaatt gaatagaaac gctaaaataa
     2701 ctatcctggg ggatggcggc tggggcacgg ccttggctgt cctcctggca aaaaagggtc
     2761 taagggtctg tttgtggggg gcctttaaag agaatatcca ggctatttcc aggcataaaa
     2821 cgaataagaa atttctccct ggggtaaaag tcccggcttc agtggatttg gcttgggatt
     2881 tggctttggc aattaaagag gcggaattga tcgtcctggc catcccttcc cagttcctgc
     2941 gccaggtcct gaagcggatc aaggggctgg atttctctaa agtatatttc ttgagcgtgg
     3001 taaaaggcat tgagaaccaa acgcttagac gggtttccca ggtaattaaa gaggaattgg
     3061 gggatgatat tgaattggcg gtcctctccg gcccgactat cgccctggag gcggctaaag
     3121 gcatccctac taccgcggtg gccagttcgg agaatatgct tttagctaag gccatccagc
     3181 atatctttac taccaataga ttcaggattt atgttaatcc ggatatggcc ggcgtagagc
     3241 tgggcgggag tctgaagaat gtgattgcca ttgcctgcgg aatatccgac gggctgggtt
     3301 ttgggaccaa caccaaagcc gcgcttttat cccgggggct ggcggagatc agccggttag
     3361 ggatagcaat gggggctaga aaagagactt tcggcggtct tagcggtttg ggcgacttgg
     3421 tgactacctg tatcagccgg gacagccgca accgcttagt cggcgaacgg attgggcagg
     3481 gcaagaggct gaaagagata ttggctaata tgaacaatgt cgctgaaggg gtggggacag
     3541 ccaaatcagc ctatctcttg ggccgcaagc ataatctgcc tatgccgatc agcgcagagg
     3601 tctataaagt gctttataag aataaagacc ctctgaaagc ggtcaatgat ttgatgtcca
     3661 gagaggtgaa agaggaataa tatttttaac ggggagtggc tcagtttggc tagagcactt
     3721 gaatggggtt caagaggcca gcggttcaag tccgctctcc ccgaccatat ttgaaaaaaa
     3781 taaagggtcg atagtcaata gtctatggtc aatagacaat aaaaggatta aaccgtaggc
     3841 tatcggctat agactataga cccttaatta ttgactctta acagaggagg tgcggaatga
     3901 attatgaagg tccggaaaga aggaggcagc ccagggttgc cggtaagttt gtggtttcct
     3961 atcgggtcaa ggaggaggtg gataattatg atatctctca gacccgcaat ctaagcttag
     4021 ggggg
//
LOCUS       DATDUB010000151         2351 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1106527, whole genome shotgun sequence.
ACCESSION   DATDUB010000151 DATDUB010000000
VERSION     DATDUB010000151.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2351)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2351)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2351
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1106527"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..358)
                     /locus_tag="VJA84_03040"
     CDS             complement(<1..358)
                     /locus_tag="VJA84_03040"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: protein motif:HMM:NF012497.4"
                     /note="adds enolpyruvyl to UDP-N-acetylglucosamine as a
                     component of cell wall formation; gram-positive bacteria
                     have 2 copies of MurA which are active; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HLD41133.1"
                     /translation="MDKLVIEGGISLKGAVTVSGAKNSVLPLLSSCLLTNERCRIKNV
                     PNLRDVITMIKILRSLGAYAEYSNGEVIVEAKTIKSHTADYKLVSTMRASFCVLGPLL
                     GRLRKAKVSLPGGCIIG"
     gene            complement(351..1139)
                     /gene="prmC"
                     /locus_tag="VJA84_03045"
     CDS             complement(351..1139)
                     /gene="prmC"
                     /locus_tag="VJA84_03045"
                     /EC_number="2.1.1.297"
                     /inference="COORDINATES: protein motif:HMM:TIGR03534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA];
                     GO_process: GO:0018364 - peptidyl-glutamine methylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor N(5)-glutamine
                     methyltransferase"
                     /protein_id="HLD41134.1"
                     /translation="MTEREILLTSILKCQRADLYAGKLALTKEQEERLAYYLSLRAKG
                     KPLQYILGETDFFGLRFKVDTRALIPRPETEILVDAVIKQFTSHKSQVTSQVKILDVG
                     TGSGCIAVSLAKSLPDARVTALDISCQALELARENALINGVSERINFIQSDLFPPGEG
                     GFDIIVSNPPYVFSQEIDKLSPEVRSEPRLALDGGNEGLDFYRRIIPLAGGFLKNGGF
                     LALEIGFQQRQGIEEIVNQQGWLRVKEVIKDYSGIERVMVLSNG"
     gene            complement(1136..2197)
                     /gene="prfA"
                     /locus_tag="VJA84_03050"
     CDS             complement(1136..2197)
                     /gene="prfA"
                     /locus_tag="VJA84_03050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012160418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016149 - translation release factor
                     activity, codon specific [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HLD41135.1"
                     /translation="MLGKLEAIEKRYIELEEKLADINLIQDKAQYQKLAKEFSGLEEV
                     VKKYRRLKFLSVELKELEGLSGDPKSQDADFLAMAKEEIPSLKERITFLKKEIEFSLR
                     GEDKDAGLDVIMEIRAGTGGDEAGIFAADLFRLYNKYALGRGWAVELLSIHGTELGGL
                     KEAIFSVKGKGAHKRLKYESGVHRVQRVPVTEASGRIHTSTATVAVMKEAQEVDLVID
                     PKDLKIDVFRSSGPGGQSVNTTDSAVRITHLPTGTVVVCQDERSQLKNKNKALRVLRT
                     RILDKMQQDELAKMSRERRAQIGSGDRSEKIRTYNFPDRRVTDHRVGVTLYQLEKVME
                     GGIDEFIDALIAQEEKSRP"
BASE COUNT          582 a          692 c          454 g          623 t
ORIGIN      
        1 ccccgataat gcatcctccg gggagggaaa ccttggcctt acgcagcctt cccaataacg
       61 gccctaacac gcagaaagac gcccgcatcg tggaaaccaa tttataatcc gcggtatggc
      121 tcttgatagt cttggcctca actattacct cgccgttaga atactcggca taagccccca
      181 gtgagcgcag gatctttatc atcgtaatca catcccttaa attagggaca ttcttaatcc
      241 tacagcgctc attagtcaaa aggcagctag acaacaaagg caagaccgaa ttcttggccc
      301 cgctgaccgt aaccgcgcct ttcagactta tccctccctc aataactaat ttatccattg
      361 cttaaaacca ttaccctttc tatacctgaa taatctttaa tcacttcctt aacccttaac
      421 cagccttgtt gattaacaat ctcttcaatg ccctgacgct gctggaaacc tatctccagg
      481 gccaaaaacc cgccattttt caaaaacccg cctgccagag ggattatcct acggtaaaaa
      541 tctaaaccct catttccccc atccaaagca aggcgcggct cactccttac ttcaggagac
      601 aatttatcta tctcttggga aaaaacataa gggggattgg agacaataat gtcaaatccg
      661 ccctcacctg gcgggaacaa atcactttga ataaaattga tcctctcact caccccatta
      721 atcaaggcgt tttcccgggc cagctccaag gcctgacaag aaatatccag cgcggttacc
      781 cgggcatcag gcaaagattt agccaggcta accgcgatac aacccgagcc cgtgccgaca
      841 tctaatattt taacctgact tgtgacttgt gacttgtgac ttgtgaactg ttttattacc
      901 gcatccacca agatctccgt ttccggcctg ggtatcagcg cccgggtatc caccttaaac
      961 ctaaggccaa aaaaatcagt ttctcctaag atatactgca gaggcttacc cttagcccgc
     1021 aaagacaaat aataagccaa tcgctcttcc tgctctttag ttaatgccaa cttgccggca
     1081 tataaatccg ctctctggca cttcaatata gaagtaagca gaatctctct ttcagtcatg
     1141 gccggctttt ctcttcctgg gcgattaagg cgtcaataaa ttcgtctatc ccgccttcca
     1201 tgaccttttc taactgatat agcgtcaccc ccacccggtg gtcagttacc cttctatccg
     1261 ggaagttata ggtgcggatt ttttcgcttc tatcgccgga gcctatttgg gcccttcttt
     1321 cccggctcat cttggcaagc tcatcctgct gcatcttatc taagatacgg gtccttagga
     1381 cccttaaggc cttattctta ttctttaact gcgagcgttc atcctgacaa accaccactg
     1441 tccccgtggg cagatgggta atcctcactg ccgaatccgt ggtattcacc gactgcccac
     1501 cgggtccgga ggagcgaaag acatctatct ttaaatcttt ggggtcaatc accaagtcca
     1561 cttcctgggc ctctttcatc accgccacag tggcagttga ggtatgtatc ctgccggagg
     1621 cctcggtaac cggcacccgc tggacccggt gcaccccgga ctcatactta agccgcttgt
     1681 gcgcgccttt gccctttacg gaaaagatgg cctccttaag gccgcccagt tccgtgccgt
     1741 ggatagacaa aagctccact gcccagccgc ggcctaaggc atatttatta tagagcctaa
     1801 acaggtccgc ggcaaatatc ccggcctcat cccctccggt gccggcgcgg atttccataa
     1861 tcacgtccag gccggcgtct ttatcttcgc ccctcaaaga gaactcaatc tcctttttca
     1921 aaaaggttat tctctctttc aatgaaggga tttcttcttt agccatggcc agaaaatcgg
     1981 catcctgtga ttttgggtca cccgacaaac cctccagctc cttcagctcc acggataaaa
     2041 acttcagccg gcggtatttc ttgaccacct cttccagccc ggaaaactcc ttagccagct
     2101 tttgatactg ggccttatcc tggatcaggt ttatatccgc cagcttttct tccagctcta
     2161 tgtaacgctt ttctattgct tctaattttc caagcataaa tattataaaa actcattgct
     2221 gtcctaatta gcgtcattgc gagcgaagcg aagcaatctc ttgcgacggg attgcttcgg
     2281 cacttcgtgc ctcgcaatga cactttaaaa atcgaatctc gaaatagtgt ttccgtcaga
     2341 gacaatgtca t
//
LOCUS       DATDUB010000152         4587 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_441787, whole genome shotgun sequence.
ACCESSION   DATDUB010000152 DATDUB010000000
VERSION     DATDUB010000152.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 4587)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4587)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4587
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_441787"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(51..1145)
                     /locus_tag="VJA84_03055"
     CDS             complement(51..1145)
                     /locus_tag="VJA84_03055"
                     /inference="COORDINATES: protein motif:HMM:NF013793.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HLD41136.1"
                     /translation="MRIIAIANQKGGCGKTTTSVNLAASLAGNGRKALLVDFDPQAHA
                     TVGLNIQAKVSIYDCLSQISPQKANIRDIIANISENFDIAPSNLVLTALEQELSNEIS
                     RESRLKEALNLVNQEYDYIIIDCPPNLGILTVNAICAATEVIVPVEPSRFSVEGLNRI
                     LEIIDLIQGRLNHKVGVKVLVTIFDSRLKYAFKILAELRNKFRESMFANIIHVNVKLK
                     ESQSFGRTVMGFDKYSRGAKDYFSLSKEIIMQEKSREKAADKPAISAKMKELVKQRLP
                     KLNLNEVLVQARFPEAKEVRVVGDFNGWRADDDTALMSREDGSWLKQLNLEPGQYHYR
                     FVVDGQWLSDPDNPLQEKNPYGEFDSLLKI"
     gene            complement(1173..1751)
                     /locus_tag="VJA84_03060"
     CDS             complement(1173..1751)
                     /locus_tag="VJA84_03060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41137.1"
                     /translation="MEKNEVYDYLARIYLDKQPKAQEEKKGALRQIGFPVFLIVAVIL
                     FFSFYFIWRLPVRLVKPQVQSLQINAGSQLIRIKYNFNNSDLKRAGYSLNFADLDVSK
                     FSVLGFQARHEIKHGPLNLRVEIENRRREKAVCYVRGISGKWNSFEIKLSDFSGISEW
                     AGLTEVSFVVEEWNALNKEDTVYLDEIRFSRY"
     gene            complement(1904..3457)
                     /locus_tag="VJA84_03065"
     CDS             complement(1904..3457)
                     /locus_tag="VJA84_03065"
                     /inference="COORDINATES: protein motif:HMM:NF015052.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 57 protein"
                     /protein_id="HLD41138.1"
                     /translation="MLYLAFVWHMHQPYYLDMATGQMQLPWVRLHGIKDYLDMVKILE
                     HYPNIRQTFNLVPSLIEQIQAYCDGVQDTWQALSYKKASELNSQEKDFIRGNFFSAHL
                     RNIISLYPRYHQLYLKKQEGKEFIEQDYLDLQVWFNLAWFDPILKKSVPALKTAIAKA
                     RNFNEEDKQKVLEAQIEVLKETLPVYKQYQDSGQIEITTTPYYHPITPLLYNTNIAKE
                     ANRAAHLPQDNFSYPEDAESQIKQAVELYQETFGRLPIGMWPSEEAVSEHILPYFIQS
                     GIKWIVADEDILLRSIRKKRSPENLYRPYLLKREEGDLSAVFRDRNLSDLIGFVYHGL
                     TEHAAVADFIGHLHNIAKGAKGKDCLVTIAMDGENAWEYYRNDGWDFLSHLYKCLSDD
                     KLIQTVTVSEYLNKFPPRDNIRRLSAGSWIYGNFNKWIGQEQKNLAWEYLAKARAELK
                     EFTERRGAGAPVDLEKAWKQIYICEGSDWFWWYGDNNRDFDQLYRRHLSNFYRFLGQE
                     PPEYLGRPI"
     gene            complement(3534..>4587)
                     /locus_tag="VJA84_03070"
     CDS             complement(3534..>4587)
                     /locus_tag="VJA84_03070"
                     /inference="COORDINATES: protein motif:HMM:NF024765.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="alginate export family protein"
                     /protein_id="HLD41139.1"
                     /translation="NGWIIGDPDTNGIALDSALAEGDLSARKAFDAIRARFDYNPLIL
                     DIIYAKVAENNTTLNDDTTLTGINAGYELSANTNIEGFFFSKIRGVTGTNGVIAVDTA
                     ATTSFDTVKQSADVVNTIGTRVVNKSIKNLALDAQVAYQFGTYNPKLDPNARFISATD
                     KAETSPRSAWGAEVVATYDLKDVAAISKYEPTLTGVYVYLSGDSRDKTGNKAYTGWDG
                     MFENQSFGHIINAIMGFSNTHLAGLSLKGKPATDLTAKVDYISGWFAKRYPEGRAAIL
                     SGVSTARQFTMGKNPYFGHELDVTLTYDYTEDVQMSLLGGIFMPSKAINERSANDPFR
                     QRANAAELIGSMKVTF"
BASE COUNT         1171 a         1171 c          982 g         1263 t
ORIGIN      
        1 tacggacctt cttttgacaa tggcttccca ggtatgcatc aaaagagagc ttaaatcttt
       61 aaaagcgaat caaattctcc gtagggattt ttttcctgca gggggttgtc cgggtcagac
      121 agccattgcc cgtcaaccac gaaacggtaa tgatattgcc cgggctcaag attaagctgt
      181 ttcagccagc tgccgtcctc gcgggacata agcgcagtat catcatccgc gcgccagccg
      241 ttaaaatctc ccactacgcg cacctcttta gcttccggga acctggcctg gaccaggacc
      301 tcattcaggt tcagcttagg caggcgctgt ttcaccaatt ccttcatctt ggcggatatc
      361 gccggcttat ccgccgcctt ttccctggac ttttcctgca ttattatttc cttggacagg
      421 ctgaaataat ccttggcccc ccggctgtac ttatcaaaac ccataactgt ccggccaaaa
      481 ctctgggact ccttaagctt gacattgaca tgaatgatat tggcaaacat actctcccgg
      541 aatttattcc ttagttcagc caggatctta aaggcatatt tgaggcggga atcaaagatg
      601 gtaaccagga ctttaacgcc tactttatgg ttaagccggc cctggataag gtcaataatc
      661 tctaaaatgc ggtttagccc ctccacggaa aaacggctgg gctcaaccgg gacaatcacc
      721 tccgtggccg cgcatatggc atttaccgta aggatcccta aattcggcgg gcagtcaatt
      781 atgatataat cgtattcctg gttaaccaag tttaaggcct ccttaagccg gctctcccgg
      841 ctgatttcat tggaaagttc ctgttccagg gcggttaaaa ccaggtttga aggagctatg
      901 tcaaaattct ccgagatatt agcgatgata tcccggatat tcgccttctg gggagaaatc
      961 tgggaaagac agtcatagat gctaacctta gcctgaatat ttaaccccac tgtggcatgg
     1021 gcctgggggt caaaatccac caggagcgcc ttgcgcccgt taccagccag agatgccgcc
     1081 aagttaaccg aggttgtggt cttaccgcag ccaccctttt ggttagcgat cgctattatt
     1141 ctcataaatg cgcccctccc cctttcttac cgttaataac ggctgaaacg tatctcatca
     1201 agatacaccg tgtcttcctt attcaaggcg ttccactctt ccaccacaaa agaaacttcg
     1261 gtcaatcccg cccactcgct aatccctgaa aaatcgctaa gtttaatctc aaagctgttc
     1321 cactttccgc ttatgcctcg gacataacaa accgcctttt cccggcgccg gttctctatc
     1381 tccaccctca agttcaaagg gccgtgtttt atctcatgcc tggcctgaaa ccctaaaaca
     1441 ctgaattttg aaacatccag atccgcgaag tttaagctat accccgctct ttttaaatca
     1501 gaattgttaa aattatattt tatccggatc aactggcttc cggcattaat ctgcaggctt
     1561 tggacctgcg gcttaactaa ccttaccgga agccgccaga taaaataaaa actaaaaaac
     1621 agaattaccg cgactatgag aaagaccgga aatccaatct ggcgcagggc gccttttttt
     1681 tcttcctggg ccttgggctg tttgtctaaa taaatcctgg ctaaataatc gtagacctca
     1741 ttcttttcca tttttacaag aaaatcgcct ccatgataat cctaataagc gattttcagt
     1801 ggtgcattat ttttcctaca ccataacata aaataattac cctgtcaatg atttttcttg
     1861 attcaggccc aaaatattgt gtgttaagcg cgcttgatac acactatatt ggcctgccca
     1921 gatattccgg cggctcctgg cctaagaagc ggtaaaaatt gcttagatgc ctgcgataga
     1981 gctggtcaaa atcccggtta ttgtccccat accaccaaaa ccagtcgctt ccctcgcaga
     2041 tgtagatctg cttccaggcc ttctctaaat ctactggcgc cccggcgccc cggcgctctg
     2101 tgaactcttt aagttccgcc ctggccttag ctaaatattc ccaggccagg ttcttctgtt
     2161 cctggccgat ccatttatta aaattaccgt aaatccaact gcccgcgctt aaacggcgga
     2221 tgttatcccg gggcgggaat ttattcaggt attcgcttac ggttacggtc tgaatcagct
     2281 tatcatcgct taaacactta taaagatgac taaggaaatc ccagccgtca ttgcggtaat
     2341 actcccaggc gttctctccg tccatagcga tggttactaa gcaatccttg cccttggcgc
     2401 ctttagcgat attatgcagg tggccgataa aatccgccac cgccgcgtgc tcggtcaggc
     2461 cgtgatagac aaaaccgatc aaatccgaaa ggttgcggtc gcgaaagacc gcggataaat
     2521 ccccttcttc tctctttaaa agataaggcc tatacaggtt ttcagggctt cttttcttgc
     2581 ggattgaacg aagcagaata tcttcatcgg caacaatcca ttttatcccg gattgaataa
     2641 aataaggcag gatatgttcc gagactgcct cctctgacgg ccacatcccg ataggcaggc
     2701 ggccaaaggt ttcttgatag agctccactg cctgcttaat ttggctttcg gcgtcttcag
     2761 gataactgaa attatcctgt ggcaggtgcg ccgcccggtt agcctctttg gcgatattgg
     2821 tattatataa aagcggggtt atgggatggt aatagggggt agtggttatc tcaatctgtc
     2881 cgctgtcttg atattgctta taaaccggta aggtctcttt taagacctca atctgcgcct
     2941 ctaatacctt ctgtttatct tcttcattaa aattcctggc cttggcgatg gccgtcttaa
     3001 gggccgggac acttttcttg agaatagggt caaaccaggc caggttaaac cagacctgga
     3061 ggtcaagata atcctgctct atgaactcct tgccttcttg tttttttagg taaagctggt
     3121 ggtaacgggg atacagagaa atgatattgc gcaggtgggc ggaaaagaaa ttcccccgga
     3181 taaaatcctt ttcctgggaa ttgagttcag aggccttctt ataacttaag gcctgccagg
     3241 tgtcttgaac tccgtcgcaa taggcctgga tctgctcaat cagggaaggc accaggttaa
     3301 aggtctggcg gatattgggg taatgctcca atatcttgac catatccagg tagtccttta
     3361 tcccgtgcag gcgcacccag ggcaactgca tctggccggt agccatgtcc aggtaataag
     3421 gctggtgcat atgccagaca aaggctaaat ataacatttt atttagaaac agcctaacaa
     3481 aaaacccccg agggtttaac cccccgaggg ttttttgggt tacattaagt taattagaat
     3541 gtaactttca ttgagccgat taactctgcg gcattggccc tctgcctgaa cgggtcattc
     3601 gcgcttcttt cattaatggc tttgctgggc ataaagattc cgcctaacaa agacatctga
     3661 acatcctcgg tataatcata agttaaggtt acatccaact catgcccgaa atagggattt
     3721 tttcccattg taaactgacg agccgtacta acacctgaca gaatcgcggc tcttccttcc
     3781 gggtatctct tggcaaacca accgctgata taatcaacct tagcggttag gtcggttgcc
     3841 ggcttgccct ttaaggaaag tccggctaag tgggtatttg aaaaacccat tatggcatta
     3901 atgatatgcc caaaagactg attctcaaac atgccatccc agccagtata ggctttgttg
     3961 ccggttttgt ccctgctatc accggataaa tagacataca ctccggtaag ggtaggctca
     4021 tacttggaaa tagccgccac atcttttaaa tcataggtag caactacctc cgcgccccaa
     4081 gcgctgcggg gagaggtctc cgctttatca gtcgcgctga taaaacgggc attaggatcc
     4141 aatttaggat tatatgttcc aaactgatag gcaacctgag cgtctaaagc caggttcttt
     4201 atgcttttgt ttactaccct ggtaccaatg gtatttacca catcagcgct ctgcttaacc
     4261 gtatcaaaac tggtcgttgc cgcggtatca acagcaatca cgccatttgt tccggtaact
     4321 cctctaatct tagagaaaaa gaacccctct atattagtat tggcgctcaa ctcataaccg
     4381 gcattaatcc cggttaaggt agtatcatca ttcaaggtag tgttattttc agctaccttg
     4441 gcatagatga tatctaagat taagggattg taatcaaacc tggcccggat agcatcaaag
     4501 gcctttctgg cgcttaagtc gccttcagct aaagcagaat caagggctat tccattggta
     4561 tccggatccc cgataatcca gccattg
//
LOCUS       DATDUB010000153        10160 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_273514, whole genome shotgun sequence.
ACCESSION   DATDUB010000153 DATDUB010000000
VERSION     DATDUB010000153.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 10160)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10160)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10160
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_273514"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     regulatory      332..411
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF01051"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="cyclic di-GMP riboswitch class I; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /bound_moiety="cyclic di-GMP"
                     /db_xref="RFAM:RF01051"
     gene            480..4754
                     /locus_tag="VJA84_03075"
     CDS             480..4754
                     /locus_tag="VJA84_03075"
                     /inference="COORDINATES: protein motif:HMM:NF020700.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41140.1"
                     /translation="MKTRKTFISILINCWICLAAAGLSYAAGSVEIQPYFEDGQGIND
                     AIGFRYRFYVVENESRDSLKAIRGASGFKGKGSQNYLLETSIYSEGASYPDESCQGFH
                     DFTGEITYAQASLRIGLAYSAKPPLAGLKTQSPEVFPKITYDDRAELVSQLNLNGKQG
                     MVQISKGIPVTDKSGWFCEKDLEDIDYIKWDIAASIDSEERTMAIALPKEAALSLASG
                     ALFSLQGESLHYSGAFKVYYWGIEVKRSSGNNWERLDNWKVTGYDGSRTDYGARKAKY
                     NNENVIEISNDGSQGEFVKEGEVLSLAAPEDTTAPSGSLKINSGSEYANSKDLTLTLN
                     AADDAGLSGYYISEEATPPAKDKEGWASFSPIASYNADISYSLKNDIINSNTPTLYAW
                     YKDSAGNISDTASDSIVLDTAGPQLAIKSPTTASTFYTKEASISLSGDASDDVSGISR
                     IICNDSQGQSLPVTGTAKWSARDIKLSKGENIFTVTAYDQLNNSAQASITVTCEVSEP
                     PGTPVFSQKYDGKAVVSGSLAWSWAPAQEGGAPEEYWVSPSWVPNGFLTKETAYSSVK
                     KLSKGTYWISILARNSFGISRKAKDMIVILDEKSDNKSSSTSSTYGTEEIADSDNAVS
                     VSAASDTDVSGVPAKTASEAADDDDEEAASSSNDDDEEDDSSAPKGAIDIDDGADYAR
                     SSAVPIFFLATDDMGVSAYYVSESPVVPNADGSGWSAITKSEEYSAEITYELTGQEGE
                     KYVYCWFKDGSGNVSEASSDSITLDKTSPEITITSHSSGDTEEASLNLSGSFSDNAEG
                     SEVIKVTASNSLSLEEKTAGLDNEAWSAELSLEKGSNVITVTAEDAAGNTASQKITLD
                     YAGQKEESAVSSAHVRSDIKDRISYIEEMLTQDQDSINDYFTRDSSRWNNFIDYNGYF
                     SAAFEGIDANGWDTTNIAFSDEEKSYIFSKLSDIIEETSFLKDAKSAIDLETSADNCR
                     AAAIREIIYVNLMDVYNDDFSKYKTDIAKSLALDKDKNSIISKAFEDLNVLFVLEEKS
                     YSSELLEARIYNVLQAVPGSLFSQPLVIGARSDSVSALIKDIEGADRGLSRINVAADF
                     DIQEVFHQLNLNIWENIEEDDDRQEKEDRAYELINRSGLQKSNYLKSEPASQCGESGI
                     FGGNSAYCFLPDSGLKITEEDISSCGYVSENDGQYCVNASSITYADNPESCGSCYVFY
                     FISPQEFLPYIADGWLNTEDLFKSALASFNDEEDPHKERMNQFLFFADLYSEDDQTVK
                     FYTSDEETSLSRQDIAISRDKDNQIVSLTIDKTEYDFTFDEDGNVDTISSSDVTPKEP
                     EAETGAVEDVTDSSAMLKGKVNANNSETSVWFEYRKEDEEDYQSYSDKQTVVGKTAKD
                     ISASISGLSQLTGYYYRLSAKNEEGVQYGEEKYFITLESQAADETE"
     gene            4837..4998
                     /gene="rpsU"
                     /locus_tag="VJA84_03080"
     CDS             4837..4998
                     /gene="rpsU"
                     /locus_tag="VJA84_03080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011244628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HLD41141.1"
                     /translation="MSEIIIKKDEPFESALRRFKKKIDKEGILRELRDRKHYEKPSER
                     KRKKAKKTR"
     gene            5006..5935
                     /locus_tag="VJA84_03085"
     CDS             5006..5935
                     /locus_tag="VJA84_03085"
                     /inference="COORDINATES: protein motif:HMM:NF013429.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate isomerase/epimerase"
                     /protein_id="HLD41142.1"
                     /translation="MGLALSTAWNGFRHEDGKGIIREIRELGFKEVELSFNLTQRIVD
                     DIAGIVKKGEIKVVSLHNFCPIPEGLKREVALPDCYSVASIDEENRRQAVKFTKISID
                     TALRLNARAVVMHCGRVEIKDRTRDLLFLYNLKGMADTPECLDLKETMRRERGEKAQG
                     HFQAALKSLEELSGYAAKQNISLGVENRYYFREIPSFEETGEIFRRFKGSNLFYWHDT
                     GHAQLWENLGFLKHKDYLDNYSPYLLGMHLHDINGGDDHLAPLNGTLDFKAFKPYLKK
                     DTIKTLEAHHPASAKDMVKAREFLEEIYSNKLE"
     gene            6090..6254
                     /locus_tag="VJA84_03090"
     CDS             6090..6254
                     /locus_tag="VJA84_03090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015744108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Trm112 family protein"
                     /protein_id="HLD41143.1"
                     /translation="MIDKELLDILACPACKADVVLENKDNQEKIICTKCGKKYPVRDG
                     IPIMLIDEAE"
     gene            6241..7299
                     /locus_tag="VJA84_03095"
     CDS             6241..7299
                     /locus_tag="VJA84_03095"
                     /inference="COORDINATES: protein motif:HMM:NF012766.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Xaa-Pro peptidase family protein"
                     /protein_id="HLD41144.1"
                     /translation="MRRSRLLEKLRNNSVDALLVSKEANVSYLCDYPCRDSYLLVHPK
                     ETIFITDFRYTEEAKKNIPGVTVFQYDNLFKDTAALARKLKVRKLGFEAKDLNFAEYS
                     KIKSYLDPKAKLKDTFNIVETLRQIKGDQEINLIRQAIKITAQTFEFIRKFLKPGVKE
                     LEIAAEIERFIRYQGAKMSAFNILIASGPNSSLPHALISSRKIRPGEPILIDIGVDIN
                     GYKSDLTRVFFLDKIPTIQRRIYGIIQEAQGLAIAAVKPGIIIADIDSAGRKHIEEQG
                     FGRYFGHSLGHGIGLEVHEEPSISSKNKAQHLEEGMVFTIEPGIYLPGKFGIRLEDIV
                     LVTKKGAEVLSGAVNKSI"
     gene            7274..7834
                     /gene="efp"
                     /locus_tag="VJA84_03100"
     CDS             7274..7834
                     /gene="efp"
                     /locus_tag="VJA84_03100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012032332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HLD41145.1"
                     /translation="MALSINQFKNGVTILLEGEVYQIIETEHVKPAKGSAFVRTKLKN
                     LKSGALLDRTFRGQDSAEEAFVEQKKLQYLYAQGDMYHFMDQENYDQLAISADVLGNS
                     VKFLKDNLETIGFFYKDRVLNVVIPNFIELTVAESEPGIKGDTSKSGNKPAKLETGAT
                     ILVPLFINPGDKIKVDTRSGTYVERA"
     gene            7871..8335
                     /gene="accB"
                     /locus_tag="VJA84_03105"
     CDS             7871..8335
                     /gene="accB"
                     /locus_tag="VJA84_03105"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006930212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HLD41146.1"
                     /translation="MNVKEIKEMIILMNENNLSELEIEKEGMRIKLKKSALSNAPEGL
                     PAPIFIEREKVSPAEPRIPEITAKEAAPGKNKNEIKSPMVGTFYRAPSPEAPPFVQVN
                     QEIEPGQVICIIEAMKLMNEIKSEIKGKILEILVDNAEPVEFGQPLFLIETR"
     gene            8335..9696
                     /gene="accC"
                     /locus_tag="VJA84_03110"
     CDS             8335..9696
                     /gene="accC"
                     /locus_tag="VJA84_03110"
                     /EC_number="6.3.4.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009624072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_function: GO:0004075 - biotin carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HLD41147.1"
                     /translation="MFSKILIANRGEIAVRIIRACKEMNIRTVAVYSQADKDSLHIRL
                     ADEAICIGPTASANSYLNIPAIISAAEITDVDAIHPGYGFLAENPHFAEICESCRITF
                     IGPTPDNIRLMGDKMQARETMRKAGIPIVPGSQSAVKDKEDALKTAKKIGYPVIIKAA
                     AGGGGKGMRVCHNDISLISGLMTAKSEAEASFGNSNVYIEKYVEKPRHIEIQLLADKY
                     GRVIHLGERDCSIQRRHQKLLEESPSPAVDSKLRKKLGETAVKAAKEVKYSSAGTIEF
                     LMDEKKNFYFMEMNTRIQVEHPVTELVTGIDILKEQIKIACGEKLKIQQDDVKINGSS
                     IECRINAEDYQNSFMPSPGRIEVLNFPGGPGVRIDSHAYQGYIVSQYYDSLIAKLIVW
                     GRDRKEAIQVMRRSLDEFAIEPIKTTISFHREVLKNPFFVKGEFSTNFINDHFKSSPK
                     KEE"
     gene            9699..10067
                     /locus_tag="VJA84_03115"
     CDS             9699..10067
                     /locus_tag="VJA84_03115"
                     /inference="COORDINATES: protein motif:HMM:NF015721.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp23/Gls24 family envelope stress response
                     protein"
                     /protein_id="HLD41148.1"
                     /translation="MRINSKADNPTVKIHKNVIASIAAAAAMEIDGVKEIGRRPLTAI
                     DIRGLLLFRAGTRPAPTYVKVEFNKNDEIKIEIPLIVKYGYNIPVLAESAQENIRQAI
                     EKMLDKTQREVNINIQGIER"
BASE COUNT         3122 a         2317 c         2491 g         2230 t
ORIGIN      
        1 ggggcatttt ccgctgtcat tgtccggctt gaccggacaa tccagtgggc gtcgtcttta
       61 ttttctggat tccccaacaa tcacagtgtg ttattataga actacccccg ccgcaggcgc
      121 attcccaagt gataaccaaa tgcgcataaa ataggatata tttatacaga ggctggagaa
      181 actgtaaaaa taacaacccc tgtggtgcaa cctatttatt tacaatgagt tacacgatta
      241 cctaaaattc gcctgcccct tgacaaagac tgttttttgt ggtatatttt atatagaaaa
      301 ttgcactttg acaaagttgt aaataattac caattgataa aggcaaatta gccgtaaggc
      361 taagacgcaa agccaccggt ccgtgtgaac gcggacagcg gggccgccaa gagggaacag
      421 gacatagccc tgaaagcgac atttgccttt cagggttttt tattgcccat tatggaaaaa
      481 tgaaaacgcg aaaaacattt atatcaatct taattaactg ttggatatgt ctggcggcgg
      541 caggactgtc ttatgccgcc ggaagcgtgg aaatccagcc ttattttgaa gacggccaag
      601 ggattaacga cgccataggt tttagatacc gcttttatgt cgtggaaaac gaaagccggg
      661 attcactcaa agctatccgc ggcgcgtcag gatttaaagg caagggttct caaaactatc
      721 ttcttgaaac cagcatctat tctgaagggg caagctatcc tgacgaatcc tgccagggct
      781 tccacgactt taccggtgaa attacttacg cgcaggcatc cttaaggatt ggcctggctt
      841 attccgccaa accgccttta gccgggctaa agacgcaaag cccggaagtc tttcccaaga
      901 ttacttatga tgaccgcgcg gaattggttt cccagcttaa tctgaacgga aagcagggaa
      961 tggttcaaat ttccaaaggt atcccggtta cggataaaag cggctggttc tgtgaaaaag
     1021 acctggaaga tattgattat atcaagtggg atattgccgc ctcaattgat tctgaagaaa
     1081 ggacgatggc cattgccctg ccgaaagaag cggctttatc cttggcctct ggggctttat
     1141 tcagccttca aggagaatcc ctgcattatt ccggggcatt taaggtttac tattggggta
     1201 ttgaggttaa gcgttcaagc ggcaataatt gggaaagatt ggacaattgg aaggtaacag
     1261 gttacgacgg ctcgcggacc gattacgggg cgcgcaaggc aaaatataac aatgaaaatg
     1321 taattgaaat aagcaatgac ggttcccagg gcgaattcgt caaggaaggg gaggttttgt
     1381 ctttggccgc tcccgaagac accaccgcgc cttcaggttc cctaaagata aactccgggt
     1441 cagaatacgc caattccaaa gacctcaccc ttaccttaaa cgccgcggac gatgccggct
     1501 taagcggata ctatatatca gaagaagcga ctccccccgc aaaggacaaa gaaggctggg
     1561 catcgttttc ccctatcgca agctacaatg ctgatatttc ttattctctt aagaacgaca
     1621 taataaattc aaatacacct actctatacg cttggtataa agacagcgcg gggaatatct
     1681 ctgacacggc ttccgattcc atcgttctag acactgccgg gcctcaatta gccataaaaa
     1741 gcccgactac ggcgtccaca ttttacacta aagaggcatc cataagttta agcggtgacg
     1801 cctcggacga tgtcagcgga atatccagga taatatgcaa tgattcccag ggccaaagcc
     1861 tgccggtaac cgggaccgcc aaatggtcgg cacgggacat caagctatct aagggggaaa
     1921 acatatttac agttaccgct tacgaccagc ttaacaattc cgcccaggcc tcaattacgg
     1981 taacctgcga ggttagcgag cccccgggga ctccggtttt cagccagaaa tacgacggca
     2041 aagcggttgt ctccggctcc ttagcctgga gctgggcccc ggcgcaagaa ggaggggcgc
     2101 cggaagaata ttgggtcagc ccaagctggg tacccaatgg attcctcaca aaggaaaccg
     2161 cttattcctc ggttaagaaa ttaagcaaag ggacatactg gataagtata ctggccagga
     2221 attcattcgg gataagccgc aaggcaaaag atatgatagt tattctggat gagaaaagcg
     2281 ataataaatc ctcctcaact tcctcaacct acggaaccga agaaatagct gatagcgata
     2341 acgcagtctc cgtgagcgcc gcttccgata cggatgtgtc cggggtcccc gcgaaaaccg
     2401 cctctgaagc cgcggatgac gatgacgaag aggcggcatc aagctcaaac gatgatgacg
     2461 aggaagatga tagctccgcg ccaaaagggg cgattgatat tgatgacgga gcggattatg
     2521 cccgctcttc ggcagtccct atcttttttc tagcaacaga tgatatggga gtaagcgctt
     2581 attatgtctc ggaaagcccc gttgttccca atgctgacgg ctccggctgg agcgcgataa
     2641 ccaagtcaga agaatacagc gcggaaataa cctatgaact gaccggccaa gagggtgaga
     2701 aatatgtcta ctgctggttt aaagacggtt ccggaaatgt gtcagaggcg tcttcggatt
     2761 ccataacgct ggataaaacc agcccggaga taactataac cagccacagc tctggagaca
     2821 cagaagaggc ttcgcttaat ttaagcggga gtttttcgga taacgcggaa ggaagcgaag
     2881 tgataaaggt aaccgcgagc aacagcttaa gccttgagga aaagaccgca ggattagaca
     2941 atgaggcctg gtcggcggaa ttatcgctgg aaaaaggaag caatgtcatt accgtaaccg
     3001 ctgaagatgc cgcgggcaat accgcatcgc aaaagatcac cctggattac gccggacaaa
     3061 aggaggaaag cgcggtgtcc tcggcccatg tccgcagtga catcaaagac aggataagtt
     3121 atattgaaga aatgttgacc caggaccagg acagcataaa tgattatttc acccgggaca
     3181 gctccagatg gaataacttt atagactata acggatattt ttccgcggcc tttgagggga
     3241 tagacgccaa tggctgggat acgaccaata ttgctttcag cgacgaggaa aaaagttata
     3301 ttttcagcaa attaagcgat attattgaag aaacatcttt ccttaaagac gccaagagcg
     3361 cgattgattt ggaaaccagc gcggacaact gtcgggccgc ggctatccgc gagataattt
     3421 atgtgaatct tatggatgtc tataacgacg atttctccaa atataaaacc gacattgcca
     3481 agtctctggc attagataaa gacaaaaaca gcataatcag caaggcgttt gaagacttga
     3541 atgtcttgtt tgtcctggaa gaaaagtcct acagcagtga gctcttggag gccaggattt
     3601 ataatgtttt gcaagctgtc ccgggatctt tgttcagcca gcctttggtc atcggcgcga
     3661 gaagcgacag cgtttccgcg cttataaaag atattgaagg cgccgataga gggttgtcca
     3721 ggataaatgt tgccgctgat tttgacatcc aagaggtttt tcatcagctt aaccttaata
     3781 tctgggagaa tattgaggaa gacgatgacc ggcaagagaa ggaagacagg gcttacgagc
     3841 tgattaaccg ctccggattg cagaagtcaa attatttgaa aagcgaaccc gcgagccaat
     3901 gcggagaaag cgggatattc ggcggcaata gcgcatattg tttcctcccg gattcgggat
     3961 taaagattac ggaagaagat attagctcct gcggatatgt cagcgagaat gacggccaat
     4021 actgcgttaa cgccagcagt ataacatacg cggataatcc agagtcctgc ggcagttgtt
     4081 atgtgtttta tttcatttcg ccgcaagaat tccttccgta tattgccgat ggatggctga
     4141 ataccgaaga tttgtttaaa tcggctttgg cgagttttaa cgacgaagaa gacccccata
     4201 aagagcggat gaatcaattc ttgttcttcg ctgacctcta ctctgaagat gatcaaacag
     4261 ttaaatttta cacttcagac gaagaaacga gcttgagccg ccaagatatc gccattagcc
     4321 gcgataagga caatcaaatc gtatccttga ctatagacaa aacagaatac gactttacct
     4381 ttgatgaaga tgggaatgtg gatacgataa gctcttcaga tgtcactcca aaagagcccg
     4441 aagcggaaac cggagccgtt gaggatgtaa ccgatagttc agctatgctt aaaggaaagg
     4501 tgaacgccaa caattcagaa accagcgtct ggtttgaata caggaaagaa gatgaggagg
     4561 attatcagag ttattccgat aaacagacag ttgtgggcaa aaccgccaaa gatataagcg
     4621 cgagcataag cggattatcc cagctaaccg gttattatta cagattgtcc gcgaaaaacg
     4681 aagaaggcgt tcaatacgga gaagaaaaat attttattac tttggaaagt caggcggcgg
     4741 atgaaacaga ataaaatagt ccaaaaatag gccgaattat aatttgacac tttcagctcc
     4801 tcatgatata gtaaggtaaa aggagatgag gactaaatgt cggaaataat aatcaagaaa
     4861 gacgagccgt ttgaatcggc cctgcgaagg ttcaagaaaa agattgacaa ggaaggcatc
     4921 ttgagggaac tgcgcgaccg caagcactac gaaaagccca gcgaacgcaa gagaaaaaaa
     4981 gccaagaaga caaggtaagg cgataatggg actggcttta tccaccgcat ggaacggctt
     5041 ccgccacgaa gacggcaaag ggattatccg ggaaataagg gaattaggct ttaaggaagt
     5101 agaattaagc tttaacctca cccaaagaat tgttgatgat atcgccggga tagttaaaaa
     5161 aggggaaata aaggtagttt ccttacataa tttctgccct atacctgaag gcctgaagag
     5221 agaagtcgcg cttccggact gctattcagt agcctccata gatgaggaaa accgcagaca
     5281 ggcagttaaa ttcaccaaga tcagcattga cacggcccta aggcttaatg cccgggccgt
     5341 agttatgcac tgcggaaggg tggagattaa agaccgcacc agggatttgc tctttcttta
     5401 taatctcaaa ggtatggcag ataccccgga atgccttgac ctcaaagaga cgatgagaag
     5461 ggagcgcggg gagaaggccc aagggcactt ccaagccgcg ttaaaaagcc tggaagaact
     5521 ttcgggctat gccgccaaac aaaatatctc tttgggggtg gaaaaccgct attatttccg
     5581 cgagattccc tcttttgagg aaaccgggga aatcttccgc cgctttaaag gctcaaacct
     5641 gttttactgg cacgataccg gccacgccca gctttgggaa aatttggggt ttctcaaaca
     5701 caaggattat ttagataatt attccccata tcttttgggg atgcacctgc acgacataaa
     5761 cggcggggat gaccatctgg cgccgttaaa tggaaccttg gattttaagg ccttcaaacc
     5821 ctacttaaaa aaagacacca ttaaaacttt agaagcccat catccggcct cggcaaagga
     5881 tatggtaaag gcaagagaat ttctggaaga aatatattct aacaaattgg aatgattact
     5941 ccgtctcgca aactgaggca aaattttctt cgataatttt gcctcgctcg gcggagttaa
     6001 ttcgcagacg gccttacggc ctacacttta tgttcacctc cacgcaaagt gaaggttcca
     6061 taaagtgtct gctcattaag gaggacaaaa tgattgacaa agagttattg gacatcctgg
     6121 cctgtccggc ctgcaaggcg gatgtggttt tggaaaataa agacaaccag gaaaagatta
     6181 tctgcaccaa atgcgggaag aaatacccgg tgcgcgacgg catcccgata atgctgattg
     6241 atgaggcgga gtaggctctt agaaaaacta agaaacaatt cagttgacgc ccttttagtc
     6301 agcaaagagg ccaatgtctc ttatctgtgc gattatccct gccgggactc ctatctctta
     6361 gtccacccca aagaaaccat tttcatcacc gacttccgct acactgaaga agccaaaaag
     6421 aacatccccg gggttaccgt atttcaatac gataacctgt tcaaagacac cgccgccttg
     6481 gccaggaaat taaaagtccg caaattgggc tttgaggcca aagacctgaa ttttgccgaa
     6541 tactctaaga taaaatcata tctggatcct aaagcaaaac tcaaagacac ctttaatatt
     6601 gtagaaaccc tgcgccagat aaaaggggat caagaaataa accttatccg gcaagccata
     6661 aagataaccg cccaaacctt tgaatttatc cggaaattcc tgaagcccgg ggtcaaagag
     6721 ttggaaatag ccgcggagat tgagcgtttt atccgatacc agggcgcaaa gatgagcgcc
     6781 tttaatatcc tcatcgccag cggcccaaac tccagccttc cccatgccct tatatcctca
     6841 cgcaagatta ggcccgggga acccatactt atagatatcg gggtggatat aaacggctat
     6901 aaatctgact tgacaagggt gttcttctta gataaaatac ccactattca acgccggata
     6961 tacggaatca tccaagaggc tcaaggcctg gccatagccg cggttaaacc agggataatt
     7021 atcgcggata ttgactctgc cggcagaaaa catattgaag aacaaggctt tggccgctat
     7081 tttggccaca gcttaggcca cggaataggg ctggaggtcc acgaagagcc atccatatcc
     7141 tccaagaaca aggcccagca tttggaagaa gggatggtct ttacaattga accggggata
     7201 tatctgcccg gtaaattcgg aataagatta gaagatatag ttttagtgac caaaaaaggg
     7261 gcggaggtat taagtggcgc tgtcaataaa tcaatttaaa aacggggtaa ccatcctctt
     7321 agaaggagag gtttatcaaa tcatagagac cgaacatgta aaaccagcca aaggctcggc
     7381 ctttgtgcgc accaagctga aaaacttaaa aagcggcgcg ctcttagacc ggaccttccg
     7441 cggccaggat agcgcggaag aggcgtttgt agagcagaag aaactccagt atctctatgc
     7501 ccagggcgat atgtatcact ttatggacca ggaaaactac gaccagttgg ccatatccgc
     7561 ggatgtatta ggcaacagcg tcaaattcct caaagacaat ctggagacca tcggtttctt
     7621 ctataaggac cgggtcctga atgtggtaat ccccaacttc attgaactga ccgtagccga
     7681 gagcgaaccc ggaataaaag gcgatacctc taaaagcggg aacaagcccg ccaagcttga
     7741 gaccggggcc acaatcctgg tccccctgtt tatcaatccc ggagataaaa tcaaggtgga
     7801 cacccgaagc gggacatatg tggagcgggc gtagtagaaa gtactgagag aataagaaag
     7861 aaggtgcggg gtgaatgtaa aagagatcaa ggaaatgatt atcctgatga acgagaataa
     7921 tctctctgaa ttagagatag aaaaagaggg gatgcgcata aaactaaaaa aaagcgcgct
     7981 ctcaaacgcc ccggagggcc tgccggcccc tatttttatt gaaagagaga aagtttcccc
     8041 ggccgagccg cgaatccccg aaattactgc taaagaagcc gccccgggga aaaataagaa
     8101 cgaaatcaaa tccccgatgg tcgggacatt ctaccgcgcc cccagccccg aggccccgcc
     8161 ttttgtccag gtcaatcagg agattgagcc gggacaggta atctgcatca ttgaggcgat
     8221 gaaattaatg aacgaaatca aatccgagat aaaaggcaaa atcctggaga tattggtaga
     8281 caacgccgag ccggtagaat tcggccagcc tttattcctt attgaaaccc gctgatgttc
     8341 tccaaaatcc tgatagccaa ccgcggggaa atcgccgtgc gcattatccg ggcctgcaaa
     8401 gaaatgaata tccgcaccgt cgcggtctac tcccaggccg ataaagactc cctgcatatc
     8461 cgccttgccg atgaggccat ctgcatcggc ccgactgcca gcgccaacag ctacctgaat
     8521 atcccggcaa tcatctccgc cgcggaaatc accgatgttg acgccatcca ccccggatac
     8581 ggattcctgg cggaaaaccc ccattttgcc gagatctgcg aaagctgccg gatcaccttt
     8641 atcggcccca ccccggataa tatccggctt atgggcgaca agatgcaggc cagggaaact
     8701 atgcgcaagg ccggaatacc aattgtcccg ggcagccagt cagcggtaaa agataaagaa
     8761 gatgccttaa aaaccgccaa gaaaataggc tatccggtaa taatcaaggc ggctgccgga
     8821 ggcgggggaa aagggatgcg ggtctgccac aatgacatca gcctgatttc agggctgatg
     8881 actgccaagt cagaggctga agccagtttc ggaaactcca atgtttatat agagaaatat
     8941 gtggagaaac cccggcatat tgaaatccag ctcttagccg ataaatacgg ccgggtcatc
     9001 catttgggag aaagggactg ctccatccag cgcaggcacc agaaactcct tgaagaatcg
     9061 ccctcaccgg cagtggattc caaactgcgc aagaaactgg gagagaccgc ggtcaaagcg
     9121 gccaaagagg taaaatacag ctctgccggg acgattgaat tcctgatgga tgaaaagaaa
     9181 aacttctatt ttatggaaat gaatacccgc atccaggtgg agcacccggt tacggaatta
     9241 gtcaccggga tagatatact taaagaacaa ataaaaatag cctgcggaga gaaactaaaa
     9301 atccagcagg atgatgtaaa aatcaacggc tcaagcattg aatgccggat aaacgccgag
     9361 gactaccaga atagctttat gccttctccc ggcaggatag aggtcttaaa ttttcctggc
     9421 ggaccgggag taaggattga cagccacgcc tatcagggat atatcgtcag ccaatactat
     9481 gactctttaa tcgccaaact gattgtctgg ggcagggacc gcaaagaagc catccaggtg
     9541 atgcgccgct ctctggacga atttgccatt gaaccgataa agaccaccat atcctttcac
     9601 cgggaggtgc tcaaaaaccc tttctttgtc aagggggaat tctccaccaa ctttattaac
     9661 gaccatttta aaagcagtcc caagaaagaa gaataacgat gcggataaat tccaaggctg
     9721 acaatccgac agtaaaaata cataagaatg ttatcgcctc tatcgccgcg gccgcggcta
     9781 tggagattga cggggtaaaa gaaattggcc gcaggcccct gaccgcgata gacatccgcg
     9841 gcctgcttct gtttagggca ggcacaaggc ctgcccctac ttacgttaag gtggaattca
     9901 acaaaaacga tgaaataaaa atagagatac cattaatagt aaaatatggg tataatatac
     9961 ccgtacttgc cgaaagcgcg caggaaaaca tccggcaggc gatagaaaag atgctggaca
    10021 aaacccaaag agaagtaaac ataaatatcc aggggattga aagataaaaa aggagagggc
    10081 tatggctgat actgacctga aggcggaaaa taaaatcctg gtggttgatg atgataaaag
    10141 cgtccgtggt tttttagagc
//
LOCUS       DATDUB010000154         4337 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_768072, whole genome shotgun sequence.
ACCESSION   DATDUB010000154 DATDUB010000000
VERSION     DATDUB010000154.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 4337)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4337)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4337
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_768072"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..403
                     /locus_tag="VJA84_03120"
     CDS             <1..403
                     /locus_tag="VJA84_03120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012811285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="elongation factor 4"
                     /protein_id="HLD41149.1"
                     /translation="TRGYGSMDYEFIGYFPTKLVKLEILVNGEVCDAFSSLVHKEMAY
                     EKGKNLVSRLKELIPKQLFEVSLQAAVGSQIIASEKIRSAGKNVTAKCYGGDITRKRK
                     LWEKQKKGKARMKQFGKVEIPQEAFLEVLKI"
     gene            403..1035
                     /gene="lepB"
                     /locus_tag="VJA84_03125"
     CDS             403..1035
                     /gene="lepB"
                     /locus_tag="VJA84_03125"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011418106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006465 - signal peptide processing
                     [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HLD41150.1"
                     /translation="MRNQRIGNESRTTNHEPRTKRFKSVAWEWVESIVVALILALVIR
                     HFVIQAFKIPTGSMRMTLIEGDRIMVNKFIYGAKIPFSDIRLPGLRQPKRGDVVVFVY
                     PEDPKKDFIKRLIGLPGETVEIKKGNIYINGELCQDPVVYNRYYYNRPETNYGSEGEP
                     VNVPQDSYYVLGDNSASSRDSRYWGFVPKKNMLGNAILIYWPPHRIRIIK"
     gene            1313..1900
                     /gene="pgsA"
                     /locus_tag="VJA84_03130"
     CDS             1313..1900
                     /gene="pgsA"
                     /locus_tag="VJA84_03130"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: protein motif:HMM:TIGR00560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008444 -
                     CDP-diacylglycerol-glycerol-3-phosphate
                     3-phosphatidyltransferase activity [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HLD41151.1"
                     /translation="MNNKPKGMSFANKVSIFRIISVPFFVTTVLYYQPSRDYLRFTAL
                     FIFALAVFSDALDGFLARVMRQTTKAGKILDPLADKLLLSCAFIFIYLKDNFPAGLNV
                     PLWLVIIVLSRDLIIFLGAAVIYVIKNELILTPSKWGKWTTLFQMLTIIFVLLQVKIL
                     MATAVLASVFTVFSGLDYLKKGLKVLYGPDMRNNP"
     gene            1872..2507
                     /gene="plsY"
                     /locus_tag="VJA84_03135"
     CDS             1872..2507
                     /gene="plsY"
                     /locus_tag="VJA84_03135"
                     /EC_number="2.3.1.15"
                     /inference="COORDINATES: protein motif:HMM:TIGR00023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0008374 - O-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006654 - phosphatidic acid biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsY"
                     /protein_id="HLD41152.1"
                     /translation="MALICAIILSYLFGSIPTAYIFGRIVKGVDIRKHGSGNVGATNA
                     FRALGAGFGITVLLLDALKGLVCVVNISDFILSRGLGLNPLMLRVILGLTAVAGHSWT
                     VFLNFKGGKGMAVTLGVLAGLSIKFPVLRIILLAEIALWLAVFLSSRIVSLASIISAI
                     TFPIFFIIFRQSPYLVLMSLILSLLIVFRHKSNISRLLRGEESRINFSRKS"
     gene            2655..2978
                     /locus_tag="VJA84_03140"
     CDS             2655..2978
                     /locus_tag="VJA84_03140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41153.1"
                     /translation="MHDIFFKNITSRNKGQRVLSSLELSEQSGIRSQVHRHLVCRITE
                     AAGTETVLPKPTLYVLKKQDMKERLEIFYCRIKGSMYVAVKDKLCLVSFINSLRIQLK
                     PSDNN"
     gene            3163..3450
                     /gene="gatC"
                     /locus_tag="VJA84_03145"
     CDS             3163..3450
                     /gene="gatC"
                     /locus_tag="VJA84_03145"
                     /inference="COORDINATES: protein motif:HMM:TIGR00135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030956 - glutamyl-tRNA(Gln)
                     amidotransferase complex [Evidence IEA];
                     GO_function: GO:0050567 - glutaminyl-tRNA synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatC"
                     /protein_id="HLD41154.1"
                     /translation="MAISREEVLKAANLARMELSPQEVELFSGQLESILGFIDQLKEA
                     DVSGVSPMNHILDIRNVTRPDEPGVSLSRDLILETAPQKNKGHFQVPKVIE"
     gene            3452..>4337
                     /locus_tag="VJA84_03150"
     CDS             3452..>4337
                     /locus_tag="VJA84_03150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011344024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidase family protein"
                     /protein_id="HLD41155.1"
                     /translation="MELDLSQVNASGLLGRIKKKEITSQDVVSRLRTRIQEVDGRVKA
                     YLRLPREADNGFPVAVKDNICICGQPVTCASKILDGFIPPYEATVITKLKEALLSPFG
                     QTNMDEFAFGSSCENSAYFPTRNPWNLERVPGGSSGGSAAAVAASEAIWALGSDTGGS
                     IRQPASFCGVVGLKPTYGRVSRYGLIAFGSSLDQIGPITKNVEDCALLLKVIAGYDPK
                     DSTSVKTDVPDYSKALGRDIRGLRIGVPKEYFVLSGAQPQGLDKEVAGGIEEAIALLK
                     KLGAKVEQVSLPHSKYAVN"
BASE COUNT         1067 a          958 c         1144 g         1168 t
ORIGIN      
        1 cacccgcggc tacggctcta tggattatga atttatcggt tatttcccca ctaagctggt
       61 aaaactggaa atattggtaa acggcgaggt ctgcgacgcc ttttccagcc tggtccataa
      121 agagatggct tatgaaaaag gtaagaattt ggtaagccgg ctaaaggagc tgatccccaa
      181 gcagttgttt gaggtcagcc tgcaggcggc agtgggcagt cagattatcg cttccgagaa
      241 gatccgctcc gcgggcaaga atgttaccgc caaatgttac ggaggggaca ttacccgtaa
      301 gcgcaagctc tgggagaagc agaaaaaggg taaggcaagg atgaaacagt ttggcaaggt
      361 agaaataccc caggaggcat ttttggaggt acttaaaata taatgagaaa ccagagaata
      421 ggaaatgaat cacgaaccac gaatcacgaa ccacgaacca agcgtttcaa atctgttgcc
      481 tgggagtggg tggagtcaat agttgtcgcc cttatcctgg ctttggtgat ccggcatttt
      541 gtgatccagg cctttaagat ccccaccggc tcaatgcgga tgaccttgat tgaaggggat
      601 aggatcatgg tgaataagtt tatctacggg gccaaaatcc cttttagcga tatccgcctc
      661 cccggcctgc gccagcccaa aaggggggat gtggtggtct ttgtctatcc cgaagaccct
      721 aaaaaggatt ttatcaagcg ccttatcggc ctgccgggtg aaaccgtgga gattaaaaaa
      781 ggcaatatct atattaatgg ggagctttgc caggaccccg tggtctataa tcgttattat
      841 tacaaccgcc cggagactaa ttacggctcc gagggagaac cggtcaatgt cccgcaggat
      901 tcttattatg ttctgggaga caattccgcc tcatcccggg acagcaggta ttggggtttt
      961 gtgcccaaga agaatatgct gggcaacgcg attttaattt attggccgcc tcaccggata
     1021 cggataatca aatgaaacag tcatgcttgg cctgtggcaa gtcctcccgt gctcaaacat
     1081 cctcggcgtt ttcctggatt cagactgtgt cataatctct taaaatgacc attttgtcat
     1141 tctgagggag cagaacgacc gaagaatctc gtcggtaatt taaaagacga gatccttcgc
     1201 tatccactca ggatgacatt gtgacacagc ctgattaata cattatggaa tacgcctgcg
     1261 gaactgcgcg cgggaggcct caccccaggc ctgataaagt tggattgact atatgaataa
     1321 taaaccaaaa ggaatgagtt ttgccaacaa agtctctatt tttaggataa tctccgtgcc
     1381 tttctttgtg actactgttt tgtactatca gccctcccgg gattatctta gatttaccgc
     1441 tttatttatc ttcgccttgg ccgtgttttc cgatgcctta gacggattct tggccagggt
     1501 gatgcgccag actactaagg ccggtaagat cctggacccg ctggcggaca aactgctttt
     1561 gtcctgcgcc ttcatattta tctatcttaa agacaatttt ccggcaggac ttaatgtccc
     1621 cttgtggctg gtgattattg tcctatcccg ggatttgatc atctttctgg gtgcggcagt
     1681 gatttatgta atcaagaatg aattgatcct tacccccagc aaatggggga agtggaccac
     1741 cttgttccaa atgctgacta taatttttgt cttactgcag gtgaaaatct taatggcaac
     1801 cgcggttttg gcctcggtat tcaccgtatt ttccggcctg gattatttaa agaagggatt
     1861 aaaggttttg tatggccctg atatgcgcaa taatccttag ctatctgttc ggctctatcc
     1921 ctacggccta tatctttggc cggatagtaa aaggggtgga tatccgtaag cacggctccg
     1981 ggaatgtggg ggcgactaat gccttccggg cgctgggggc gggctttggg attacggtct
     2041 tacttttaga tgccttaaag ggcttagtct gcgtggttaa tatttccgat tttatcttga
     2101 gccgggggct tgggctcaat cctttaatgc tacgggtcat cctgggtttg accgcggtag
     2161 ccgggcatag ctggacagtc tttctcaatt ttaaaggtgg aaagggtatg gccgttacac
     2221 tgggagtgtt ggcaggcttg agtattaagt tcccggtctt gaggataatc cttttggccg
     2281 agatagccct ttggctggca gtattcttgt ccagccggat agtttccctg gcctcaatta
     2341 tcagcgcgat aaccttcccg atatttttta taatttttag acagtcaccc tatttagttt
     2401 tgatgagcct cattttatcc ctcctgatag tatttcgtca taagtctaat atttccaggc
     2461 tgttacgcgg agaggaatcc cggataaatt tctcccgaaa gtcctaaaat cttgccccag
     2521 ggaagcgttt tcccgaaaga gtagttttac tcttgaatct attagagggt atgtgatata
     2581 ctttaaatag aattcgggat ttttttatga ggtcttatta agtagtttta aaaagaggtt
     2641 aggaggggag gcaaatgcac gacatattct ttaaaaatat aacctcgcgc aataaaggcc
     2701 agcgggtgct ttccagcctg gaattaagcg agcagtccgg catccgtagt caggtgcacc
     2761 ggcacttagt ctgccggata accgaggccg cgggcacaga aaccgttctt ccaaagccta
     2821 ccttatatgt cttaaagaag caggatatga aagaacggct ggagattttc tactgccgga
     2881 taaaagggag tatgtatgtg gcggtaaaag acaagctctg tttggtttcc ttcatcaatt
     2941 ccctgcgcat tcagctcaag ccttcggata ataattaagg gtctatagtc aatggtcaat
     3001 agtcaaaaaa tatagtttcc aaaatatagt ttctataggt ttgacttttg gcttcgggaa
     3061 tgttatattg tagtggtcgc gcggcgcgcg gccattattt gtttaagccg gggcggggtt
     3121 agaaaacccc gcctatccta gaggctatac atagtataga ttatggcgat ttccagggaa
     3181 gaggttttaa aggcggcgaa tttggccagg atggagttaa gtccgcaaga ggtggagttg
     3241 ttttccgggc agttagagtc tatcctgggg tttattgacc agctcaaaga ggcggatgtt
     3301 tcgggggttt ctccgatgaa ccatatcctg gatatccgca atgtaacccg gccggatgag
     3361 ccgggggttt ctttgagccg ggatctgata ttagagactg ccccgcaaaa gaacaaaggg
     3421 cattttcagg tgccgaaggt gattgaatag gatggaattg gatttatctc aagtaaacgc
     3481 ttcagggctt ttaggacgga ttaagaaaaa ggaaatcacc tcgcaagatg tggtttcgcg
     3541 gcttcggacc aggatacagg aggtagacgg cagggtgaag gcctatctgc gcctgccccg
     3601 ggaagcggat aacggctttc cggtagcggt taaggataac atctgtattt gtggccagcc
     3661 ggttacctgc gcctctaaga ttttagatgg gtttattccg ccttatgagg ccacggtaat
     3721 cacaaaactg aaagaagcgc tcttaagccc ttttggccag accaatatgg atgagtttgc
     3781 ctttggctca tcctgcgaaa actccgctta tttccccacc cgtaatccct ggaatttaga
     3841 gcgcgttccc ggcggctcat ccggcggctc ggccgcggca gtggccgcct cggaggcaat
     3901 ctgggccctg ggttcggaca ccggaggctc tatccgccag ccggcgtctt tctgcggggt
     3961 ggtggggcta aagcctacct acggccgggt ttcccgttac ggcctgattg cctttggctc
     4021 cagccttgac cagatcggcc cgatcaccaa aaatgtggag gattgcgcgc tattattaaa
     4081 ggtaattgcc ggttatgacc ccaaggattc tacttctgta aaaacggatg tcccggatta
     4141 ttctaaggcg ctgggccggg atatcagagg attgaggata ggcgtcccca aggagtattt
     4201 tgttttatcc ggcgcccagc cgcaaggcct ggataaagag gttgccggag gaatagaaga
     4261 agcgattgcc ctgctgaaga agttaggggc aaaagtggag caggtcagcc tcccgcactc
     4321 caaatacgcg gtgaatg
//
LOCUS       DATDUB010000155         3280 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1112807, whole genome shotgun sequence.
ACCESSION   DATDUB010000155 DATDUB010000000
VERSION     DATDUB010000155.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3280)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3280)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3280
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1112807"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(163..492)
                     /locus_tag="VJA84_03155"
     CDS             complement(163..492)
                     /locus_tag="VJA84_03155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41156.1"
                     /translation="MHIKLERVGSFAELKLMLPGIRNVETIDLDNEFKQIQAMVSADI
                     RPSDTRILEFGAACYYKGEFDQRLEQVSSCIKAAHLADEFLGKESSDTLRLATILPDA
                     LYAYSVN"
     gene            complement(1223..2548)
                     /locus_tag="VJA84_03160"
     CDS             complement(1223..2548)
                     /locus_tag="VJA84_03160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012529654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HLD41157.1"
                     /translation="MNNKDSFMDFKGIFRALKHRNYRLFFGGQTISLVGTWMQQVALS
                     WMVYRLANSVFLLGAMGFVIQIPAFILTPIAGVIADRCPRHRILVITQVLAMLQALIL
                     SALVLTGAITIWHIFALGIFIGLVNAFDIPIRQAFTVEMIEGQDDLGNAIALNSSMFN
                     FARLLGPAIAGILISLIGESGCFLLNAVSYLAVIISLLAMRIIPQRIEFKNVPVLSEL
                     KDGLKYAFGFKPIKHILLLLALVSLTGVPYQLLMPVFARDIFHGGPRTLGFLVAMSGL
                     GAFSGTIYLAAKKTVIGLGRNIAQATALFGLGIISFSLSRVFWLSLLFTFIAGFGIMV
                     QMAASNTILQTIVDEDKRGRLMSLYTMAFMGTAPLGSLWAGSLASHIGAPYALLIGGF
                     CCIISAFIFARQLPALREKIRPIYVKKGIIMEVVSGIQSAARLEIFSKE"
     gene            complement(2745..>3280)
                     /locus_tag="VJA84_03165"
     CDS             complement(2745..>3280)
                     /locus_tag="VJA84_03165"
                     /inference="COORDINATES: protein motif:HMM:NF025217.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HLD41158.1"
                     /translation="AGLDLYFYAKAAGENGRVYGLDISEDMVNKAKANMEAAGIKNAE
                     IKCGHSDNLPFQDNFFDVVASNGIYNLSPDKEKVMREALRVLKPGGRTVFCEIVLKEA
                     LPESVRKSIDDWFRCIGGALPEKEFLALMEKSGFENIEVISKIRNARTGHELALRANL
                     RAYKPQGHGLASYKPKP"
BASE COUNT          910 a          814 c          694 g          862 t
ORIGIN      
        1 tcaggatgaa ttaaatgatc gtccgcgtaa aacactaaac tggtatacgc cccatgagaa
       61 attctgtgaa gtgttgcatt agcaacttga atctaccatc aacaacaatt tttaaccttt
      121 atgcccgcaa tgacaagatt aggattttac agcggtctca aactaattca cactatacgc
      181 atacagcgcg tccggaagta ttgtggctaa gcgcagggtg tccgagcttt ctttgcccag
      241 gaactcatcg gcaaggtggg ccgctttaat gcaggagctt acctgctcaa gcctttggtc
      301 aaactctccc ttataatagc aggcggcccc aaactccagt atccgggtgt ccgaaggccg
      361 gatatcggca ctcaccatcg cctggatttg cttaaactca ttatccaggt caattgtctc
      421 tacattgcgt atccccggca acatcagctt caactccgcg aaactcccca cccgttccaa
      481 tttaatatgc atcgcccggt cggtaagatc aataccaccg actacatttt taacttttag
      541 agtagcaaaa tcttgagaag tttcctgaga ggcaactaac gatgaagacg attttgtatc
      601 ggcagagacg gcttgtcgtg tttcatctac cgcaaagaga aaattatcat atttatctat
      661 ctttgctctt cccctaattc cacttccaag caaaattgcc aaaagatcac tttttgaaag
      721 tgcatcggct ccttttttaa taaatcgttc tcttgggtga tctatttttg ggatatcttt
      781 aatttttgcc atactttgct tagctaacta cttactttat tactccataa acaaaaacct
      841 ccgccctatt tgagcgaagg tttgagttat ttttcccgac atctttattt cttctattgt
      901 cgggatcccg gccgctaaga ataagcatgc cgggaaacgt ggcagttccc ccttcaaaca
      961 taccacacca attttcattt ctaatcttat cataatatca tattaagtca ataattatcc
     1021 ttttcagggg gaactcgcaa tttttccccc tcacctaacc cctccccgcc tccccttggt
     1081 aaggggagga tttctctccc gcgaggggag aggaaatagc acgcgagaat agttgccatg
     1141 ttgactgatt actcctcccc ggaggagctg ggttaaattt caatatatta cgcgggcgtt
     1201 gagcgttatg ccggaggcgg ctttactcct tggagaaaat ctccaggcgc gcggcggatt
     1261 ggattccgct gactacttcc ataattatac cctttttgac gtatatgggg cggatttttt
     1321 ctcttagcgc gggcagttgt ctggcaaaaa taaacgcgct gattatacag cagaaacctc
     1381 cgatcaatag ggcgtaaggg gcgccgatat ggctggccag actgcccgcc cataaactgc
     1441 ctaaaggagc ggtccccata aaagccatag tatataaact catcagccgg ccgcgcttat
     1501 cttcatcaac tattgtttgt aaaatagtat tgctggcggc catctgcacc ataatcccga
     1561 aaccggcaat gaaggtaaac aacagcgata accaaaatac cctggataag gaaaaactga
     1621 taatccccag gccaaagagc gcggtggcct gggcgatatt gcggcctaaa ccgatcacgg
     1681 tttttttggc cgccagataa atcgttccgc taaaagcgcc taagcccgac atagccacca
     1741 ggaaacccag cgtcctgggc ccgccgtgaa aaatatctct ggcaaaaaca ggcatcaaca
     1801 attgataagg aactccagtt aagctcacca gagccaggag caaaagaata tgcttaatcg
     1861 gtttaaaccc aaaggcatat ttaaggccgt ctttcaattc actaagcacg ggcacatttt
     1921 taaattctat tctttgggga ataatccgca tagccaataa agaaattatg acggccaggt
     1981 aacttacggc atttaataga aaacagccgc tttctcctat caggctaatc agtataccgg
     2041 cgatagccgg gcccagcagt ctggcaaaat taaacattga agagttaagg gcgatggcat
     2101 tgcctaaatc atcctggccc tcaatcatct ccacggtaaa tgcctggcgg atagggatat
     2161 caaaggcgtt caccaggccg ataaatatgc ctaaggcaaa tatatgccag atggttatgg
     2221 cgccggtcag caccagcgcg gataaaatca acgcctgaag catagccaga acctgggtaa
     2281 taaccagtat ccggtggcga gggcagcggt cagcgattac cccggcaata ggggttaaaa
     2341 taaaagccgg aatctggata acgaacccca tagcgcccaa aagaaatacc gagttggcca
     2401 ggcgataaac catccagctt aaggcaacct gctgcatcca ggttcccacc agcgatatgg
     2461 tctggccgcc gaagaacaac ctgtagtttc tatgcttaag ggcgcggaag atacctttga
     2521 aatccataaa actatcttta ttattcatac ctcaaggcct cgagcttgga ttagctttgc
     2581 tttagacaca atggatgaat agtatgctac atcaaactaa gatatctgtc aaatacgaaa
     2641 ggggcctggc acctgagatt accttagaaa cttggctctt tgtttttgga agaggaaggc
     2701 gggaattttt tgtaaggtga gaaaaagact ttttctttca ggatttatgg ctttggctta
     2761 taggaagcca aaccatggcc ttgtggttta taggcgcgga ggttggcgcg gagggcgagc
     2821 tcatggccgg ttctggcgtt tcttattttg gatatgactt ctatattctc aaatccggat
     2881 ttttccatca aggccaaaaa ttccttttcc ggtaaggccc cgccaataca tctaaaccaa
     2941 tcgtcaatac tctttctcac gctttccggc agggcttctt tcaggacaat ttcgcaaaaa
     3001 accgtccggc ccccgggctt taatactctc aatgcctcac gcataacctt ttctttgtca
     3061 ggggagaggt tataaatacc attggaagcc accacatcaa aaaaattatc ctgaaaagga
     3121 agattatcag aatgcccgca tttaatctcc gcgttcttaa tcccggctgc ctccatattg
     3181 gctttggctt tattgaccat atcttccgag atatctaatc catataccct gccattttct
     3241 cccgccgcct tcgcgtaaaa atagagatcg aggccggctc
//
LOCUS       DATDUB010000156         2343 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_769363, whole genome shotgun sequence.
ACCESSION   DATDUB010000156 DATDUB010000000
VERSION     DATDUB010000156.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2343)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2343)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2343
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_769363"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..242
                     /locus_tag="VJA84_03170"
     CDS             <1..242
                     /locus_tag="VJA84_03170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41159.1"
                     /translation="GLASLFILEGAIDTGPARKKDAPRPLVEIKFDPEKPLETIKMLA
                     LLLSKRGFSIENLEYIDLKNLNSPVLLEKKEKMKT"
     gene            242..1465
                     /gene="ftsA"
                     /locus_tag="VJA84_03175"
     CDS             242..1465
                     /gene="ftsA"
                     /locus_tag="VJA84_03175"
                     /inference="COORDINATES: protein motif:HMM:TIGR01174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043093 - FtsZ-dependent cytokinesis
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HLD41160.1"
                     /translation="MPKYITHYGLEVASDIITVVRAISDKSGKITEVSCKSCPSAGIS
                     DGAIKELGLLSETISRLLGGLSASCGQRIKSLIVSMPSLRLKVKHSSGLLPISERSNK
                     IITSSDMDKVTRQAYNLGLGIDEYVLCSIPQGYTVDNQAQVANPLGLYSHRLGVELLL
                     VTALYPEAQNLVSAVEKAGYKVQAVILSSLAASLCALPEEDKDRGCCFLDIGYDFIRM
                     VAFKGGILRGMECFDFGSKDLNRALSQELKISYELAGKIKASYGAAFAQGKDLEQEVL
                     VSQKDKTYRPIKRRLISSVLESKLRDMFALIKERFSSRYRIEDFPAGVIVCGRDALLE
                     GFLEILENSLGLTVSLAKMEDLPVKDISCAGAIGLIKHSLSQYPKIEFFKFSSGRNIV
                     EKIARKSKEIYKEYF"
     gene            1509..>2343
                     /locus_tag="VJA84_03180"
     CDS             1509..>2343
                     /locus_tag="VJA84_03180"
                     /inference="COORDINATES: protein motif:HMM:NF025055.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pili methyl-accepting chemotaxis
                     transducer N-terminal domain-containing protein"
                     /protein_id="HLD41161.1"
                     /translation="MSVPITFRYGTALFLLFVLSCLSFWVLRENIASQKDSAYIINIS
                     GRQRMLSQRIALFSLRLVNTGDELERQRIAGELKKAIELMEKSDRDLTLKVRGSKASP
                     EVAAYLNQAKSLYSSYRDNLNLDNSHLDYLLGAAENRFLLYLDSVVSRYQKDSEEKTA
                     RLEVIQSWAFALTAFLLLGIGIFIFRPMALRIQKEASQLREQSASLVISNQKLEEEIT
                     ERRLIEERLIVSNEFNQSLLETIPFGLDIVDEEGRILYLNDKLEAIFGKEAIGKLCYL
                     LY"
BASE COUNT          611 a          518 c          612 g          602 t
ORIGIN      
        1 ggggactggc ttcattattt attctggagg gcgctattga taccgggcct gccaggaaga
       61 aggatgcccc ccggccgctg gtagagataa aatttgaccc ggagaaaccg cttgagacga
      121 ttaagatgct ggctttgctc ctctcaaaac gcggattttc aatagagaat ctggaatata
      181 ttgatttaaa gaacttaaat tctcctgtcc tgctggaaaa gaaagaaaag atgaagacct
      241 gatgcctaaa tatataaccc actacggatt ggaggttgcc tcggacataa tcactgtcgt
      301 ccgggcaata agcgataagt ccggaaagat aaccgaggta tcctgcaaat cctgtccttc
      361 tgcgggaata agtgatgggg caatcaagga gttaggcctg ctttccgaga ctatctcaag
      421 gcttttagga ggcctgtctg cctcttgcgg gcagaggatc aaatctttga tcgtatctat
      481 gcccagcctc cggctcaagg ttaaacactc ttcgggattg cttcccatct ccgagcgctc
      541 aaataaaatc attacttcct ccgatatgga taaggttacc cggcaggcct ataacctggg
      601 tctaggtatt gatgaatatg tcttgtgttc aatcccccag ggttatacgg ttgacaacca
      661 ggcccaggtg gcgaatcctt taggccttta cagccaccgc ctgggagtgg aactgctttt
      721 ggttaccgcc ttatatcccg aggcgcagaa tctggtctcc gcggtagaaa aggccggata
      781 caaggtccag gcggtgattt tgtcttcttt ggccgccagc ctctgcgctc ttcccgaaga
      841 ggacaaggat agaggctgtt gctttctgga tataggctat gattttatcc ggatggtggc
      901 ttttaaaggc gggatattaa gggggatgga atgttttgat ttcggctcca aggatttaaa
      961 ccgcgccctt tcccaggagc taaagatctc ttatgaactg gccgggaaga tcaaagcctc
     1021 ttacggggcg gcctttgccc aaggaaagga tttggagcag gaggtgctgg tcagccagaa
     1081 ggacaagacc taccggccga ttaaacgccg cttgatcagc agcgtcctgg agagcaaact
     1141 acgggatatg ttcgctctaa taaaggaaag gttctccagc cgttaccgga ttgaggattt
     1201 tcccgccggg gttattgtct gcggcaggga cgccttactg gagggtttct tggaaatcct
     1261 ggaaaacagc ttgggtctga ccgtgagcct ggctaaaatg gaagaccttc cggtaaagga
     1321 tatttcctgc gccggggcaa tcggactgat taaacattcg ctgtcgcaat atccgaagat
     1381 agaatttttc aagttctcat caggcagaaa catcgtggaa aagatcgcgc gcaagtccaa
     1441 ggagatatat aaggaatatt tttaaagaaa aaatcaaaaa acagataatg ataaaccggg
     1501 aaaataattt gtctgttccc ataactttca ggtatggcac tgccctgttt ttgctctttg
     1561 tcctttcttg cttgagtttc tgggttttga gggagaatat cgcctcgcag aaagacagcg
     1621 cctatatcat taacatcagc ggccggcaga ggatgctttc ccagcgcatt gccctttttt
     1681 ccttaaggct ggtgaatacc ggggatgaat tggagcgtca gaggatagcc ggggaactga
     1741 agaaggccat agagctgatg gagaaatcag accgggattt aaccctgaaa gtccggggga
     1801 gtaaggcttc tcccgaagta gccgcctatc ttaatcaggc caaatcttta tactcctctt
     1861 accgggataa tttaaactta gataacagtc atttagacta cctgcttggc gcggccgaaa
     1921 accggtttct tttgtacctg gatagtgtgg tcagccggta tcagaaagac agcgaagaaa
     1981 aaaccgctcg cctggaagtg attcaatcct gggccttcgc gctcacggcg tttcttcttt
     2041 tgggcatagg catttttatc tttcgtccga tggccttacg catacaaaag gaggcctccc
     2101 agttgagaga gcagagcgct tccctggtca tttccaatca gaaattagaa gaggaaatca
     2161 ccgagcgcag gctgatagaa gagcgcttga ttgtcagcaa tgaattcaac caaagcctgt
     2221 tggaaactat ccccttcggg ttggatattg tggatgaaga agggaggata ttgtatctga
     2281 acgataagct ggaggctatt tttggcaaag aggctatagg taagctttgt tacctgcttt
     2341 aca
//
LOCUS       DATDUB010000157         2681 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1452573, whole genome shotgun sequence.
ACCESSION   DATDUB010000157 DATDUB010000000
VERSION     DATDUB010000157.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2681)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2681)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2681
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1452573"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..413)
                     /locus_tag="VJA84_03185"
     CDS             complement(<1..413)
                     /locus_tag="VJA84_03185"
                     /inference="COORDINATES: protein motif:HMM:NF015412.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HLD41162.1"
                     /translation="MKKIRRIGIAGCGNIGSEIAGAIIKDFAPVARLSALYDIDPLKA
                     RGLSEKLGKKNLTAPSLKDLIAKSDLVIECASAQASAGIARQAIKSGRDCMLMSVGGL
                     LEEEKILELARKAGVRLYIPSGAVCGIDGLKADSLA"
     gene            complement(410..1246)
                     /gene="panC"
                     /locus_tag="VJA84_03190"
     CDS             complement(410..1246)
                     /gene="panC"
                     /locus_tag="VJA84_03190"
                     /EC_number="6.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011928301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004592 - pantoate-beta-alanine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HLD41163.1"
                     /translation="MLSNIPRMRAFTDEAKKKGKTIGFVPTMGYLHPGHLSLIRQAKN
                     DCDICVVSIFVNPIQFGPKEDYRGYPRGMEMDRILSRSAGADCVFSPTAGQIYPPDYQ
                     TYVNVERISSGLCGRSRPGHFRGVATVVNKLFNIVRPDIAYFGKKDYQQALVIERMCA
                     DLNMPLKIKIMPIIREADGLAMSSRNHYLSHRERQEAAVLHQSLSDAKKKIASGESNP
                     RKISAMIETRILKDTAAKIDYVSVADSKTLEAVDTVKGRVLIALAAWFGRTRLIDNII
                     CG"
     gene            complement(1292..1684)
                     /gene="folK"
                     /locus_tag="VJA84_03195"
                     /pseudo
     CDS             complement(1292..1684)
                     /gene="folK"
                     /locus_tag="VJA84_03195"
                     /inference="COORDINATES: protein motif:HMM:TIGR01498.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0003848 -
                     2-amino-4-hydroxy-6-hydroxymethyldihydropteridine
                     diphosphokinase activity [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
     gene            complement(1752..>2681)
                     /locus_tag="VJA84_03200"
     CDS             complement(1752..>2681)
                     /locus_tag="VJA84_03200"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HLD41164.1"
                     /translation="IAEWYKKRFRVSLDPESEILPLIGSKEGIAHMPLAFVNRGDYVL
                     APNPSYPPYRGSTILSDGKIQDMPLLEKNNFLPDFKKIPLPARKKAKLMFLNYPNNPT
                     GAIADAGFYRKAIDFASRHNIIIAHDAAYSEISYDGYKPMSFLEVEGAKDLGVEFHSL
                     SKTYNMTGWRIGWVCGNARIISGIAKVKSNIDSGIFSAIQVAGIEALTGPQEHIRKMR
                     AIYQERRDILCAGLSRIGWKVSRPKATFYVWVNVPKGYDSRGFCAFLLEKADIVATPG
                     VGFGEYGEGYIRFALTVSKERIQQAIERIKKRV"
BASE COUNT          651 a          715 c          620 g          695 t
ORIGIN      
        1 gctaaactgt cggccttcag tccgtctatc ccgcagacgg ccccggaagg aatatacaga
       61 cgaaccccgg ctttccgggc caattctaaa attttctctt cctccagcaa gccccccacg
      121 ctcatcagca tacagtcccg ccctgatttt atagcctgtc tggctatccc ggcagaggcc
      181 tgcgcggaag cgcactctat gactaagtct gatttggcga ttaaatcctt aaggcttggc
      241 gcggtgaggt ttttctttcc caacttttca ctcaatcccc gcgctttcaa agggtcaata
      301 tcgtataaag cgcttaacct ggcaacagga gcgaagtctt taatgatggc cccggctatc
      361 tctgaaccta tgtttccgca cccggcgata ccgattcttc ttatcttttt catccgcaga
      421 taatattatc aattaagcgg gtccggccga accaggcggc caaagctatt aggaccctgc
      481 cttttaccgt atcaacggct tccagggttt tagaatccgc caccgagaca taatcaatct
      541 tcgcggcagt gtcttttaga attctggtct caatcatcgc ggatatcttc cggggattgc
      601 tttctcccga ggcaatcttt ttcttggcat ctgacaagga ttgatgcagg accgcggcct
      661 cttgcctttc ccgatggctt agataatggt tgcgcgaact catggccagg ccgtcagcct
      721 cacggatgat cggcataatc ttaattttaa gcggcatatt caggtccgca cacattcttt
      781 ctatcactaa cgcctgctgg taatcctttt tgccgaaata agcaatgtcc ggacggacga
      841 tattgaacag tttgtttact accgtagcca ccccccggaa atgcccggga cgcgaccggc
      901 cgcacaaacc ggagctgatt ctttccacat tgacataagt ctgataatct ggaggatata
      961 tctggcctgc cgtcggagaa aaaacacaat ccgccccggc tgatcttgag aggatgcgat
     1021 ccatttccat gccccgggga tacccgcgat aatcttcctt agggccgaac tggatggggt
     1081 ttacgaaaat gctcaccaca cagatatcgc agtcattctt ggcctgcctg atcagggaga
     1141 gatgccccgg atgcagatac cccatagtag gcacaaagcc gatagtcttg ccttttttct
     1201 ttgcttcatc tgtaaaggcg cgcatgcgcg ggatattaga aagcaataag gtttccccgg
     1261 ctatggattt aatcagccgg ggggcgatct ctttaagcgg attaagcgta aaagaccttt
     1321 cccttaggcg gggatgggga atctttaatt tcggggtatt tatgatttta tcgccgtaaa
     1381 aaagaatatc tatatctatc cgccgggggg aattccgaag acgccttctt tccctgccca
     1441 gattaatctc aatgccctgg aatcttttta agagttggga aggagtaaga ctgacctgaa
     1501 gcctggcggc tgaattaata aacctttgag aattgagggg gcatccctgg gcttcagttt
     1561 cataaaaaga agaaaccttg tccaggcgcg ccccgggaat ttcattgata agccgcaagg
     1621 cctcacctat attcttttgc ctattcccta aatttgagcc taaacctata tagcaggtaa
     1681 tcataccatt ttcaccctcc cctaacccct cccatcaagg gaggggaatc aataggagca
     1741 cactatgcta cttatacgcg cttcttgatt cgctcaatag cttgctgtat ccgttctttg
     1801 gataccgtta aggcaaaacg gatataccct tccccgtatt cgccgaagcc cacacctggg
     1861 gtggccacga tatcggcttt ctccagcaaa aaggcgcaaa aaccgcggga atcgtatccc
     1921 ttagggacat tcacccagac ataaaaggtg gctttgggcc gggaaacctt ccagccgatc
     1981 ctgctcaagc cagcgcaaag gatatctctt ctttcctgat agatggcgcg catcttccgg
     2041 atatgctcct gcggcccggt taaggcctca atcccggcaa cctgtatggc gctgaatatc
     2101 ccggaatcaa tatttgattt taccttggca attccgctta taatccgcgc gtttccgcaa
     2161 acccagccaa tacgccagcc ggtcatatta taggtcttgg acaaggaatg gaattccacc
     2221 ccgagatcct ttgccccctc aacctccagg aagctcattg gtttataacc gtcataagag
     2281 atctcggagt aggccgcatc gtgggcgatg ataatattgt gcctggaggc gaagtctatc
     2341 gccttacggt aaaatccggc atccgcgatt gccccggtgg ggttattagg gtaattcagg
     2401 aacatcaatt tcgccttttt acgcgccgga agcgggattt tcttgaaatc cggcaggaaa
     2461 ttattctttt ctaaaagcgg catatcctgg atcttaccgt cagaaagtat agttgagccg
     2521 cgatatggcg gataagacgg attaggagcc agcacataat ccccccgatt aacaaatgcc
     2581 agaggcatat gggcaatgcc ttcttttgag ccgataagag gcaggatttc gctttccggg
     2641 tctaagctga cgcggaaacg ttttttatac cactccgcga t
//
LOCUS       DATDUB010000158         2620 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1945571, whole genome shotgun sequence.
ACCESSION   DATDUB010000158 DATDUB010000000
VERSION     DATDUB010000158.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2620)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2620)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2620
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1945571"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(274..471)
                     /gene="rpmE"
                     /locus_tag="VJA84_03205"
     CDS             complement(274..471)
                     /gene="rpmE"
                     /locus_tag="VJA84_03205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005937210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L31"
                     /protein_id="HLD41165.1"
                     /translation="MKTGIHPNYQESTIICACGEVIQTRSTKPSMRVEICAKCHPFFS
                     GKQRLVDSAGRVDKYMKKYKK"
     gene            complement(597..1853)
                     /gene="rho"
                     /locus_tag="VJA84_03210"
     CDS             complement(597..1853)
                     /gene="rho"
                     /locus_tag="VJA84_03210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013705675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0008186 - ATP-dependent activity, acting
                     on RNA [Evidence IEA];
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HLD41166.1"
                     /translation="MEKVEIGKLKEMKVTELNKLAKELNVNGISGVRKQDMIFKILQA
                     QAEKDGLMFGEGVLEILSDGFGFLRSPNYNYLPCPDDIYISPSQIRKFDLRTGDTVSG
                     QIRPPKEGEKYFALLKVEAVNFENPENVREKILFDNLTPVYPHNRFVLETTPNEISMR
                     IMDLLSPIGKGQRGLIVAQPYSGKTVLLQKTANSIMQNNPDVILIVLLIDERPEEVTE
                     MQRIVKGEVISSTFDEPPERHVQVAEVVLEKAKRLVEHKKDVVILLDSITRLARAYNS
                     VMPHSGKILSGGVDSNALQKPKRFFGAARSVEEGGSLTILATALVDTGSRMDDVIFEE
                     FKGTGNMEIQLDRNLFQRRIYPALDIKRSNTRHEELLLRPEDLNKVWILRKVLNELNN
                     VEAMELLIERLAKTKTNEEFLNSMNR"
     gene            complement(1962..2498)
                     /gene="coaE"
                     /locus_tag="VJA84_03215"
     CDS             complement(1962..2498)
                     /gene="coaE"
                     /locus_tag="VJA84_03215"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: protein motif:HMM:NF013301.4"
                     /note="Dephospho-CoA kinase (CoaE) performs the final step
                     in coenzyme A biosynthesis; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004140 - dephospho-CoA kinase activity
                     [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HLD41167.1"
                     /translation="MIIGLTGGLGCGKTTVARMLKKRGAYVIDADKIVHRIIDGPARK
                     KLAEVVFNDREALQRLCAKVHPLVKREILRQLKSLGKDKTAVIDAPLLIESAFHKKCD
                     YLVVVKAPLRKQLERAKQSLAISRQEALKRIRLQMPLREKIALADFVIDNGGSLSDTE
                     RQVRKLWRKVVIPSRKHS"
BASE COUNT          639 a          698 c          534 g          749 t
ORIGIN      
        1 agcgtcattg cgagcgaagc gaagcaatct cttgcgacgg gattgcttcg gcacttcgtg
       61 cctcgcaatg acactttaaa aatcgaatct cgaaatagtg tttccgtcag agacaatgtc
      121 ataatttgga catgtctgat aaaaactcta aactctaaat cctaaactcc aaataaattc
      181 aaaatccaaa actcaaaatc taaaacagct ttttgagttc ggagaatttg agttttgagt
      241 ttgtttaggg tttagggttt agaatttagg attttatttt ttatatttct tcatatactt
      301 atccactctt ccggcggaat ccaccaatct ctgcttgccg ctaaaaaaag gatggcattt
      361 agcgcagatt tccaccctca tactcggctt agtagagcgg gtctggatca cctctccgca
      421 ggcgcagata atggttgatt cctgataatt cggatgtatc ccggtcttca ttttttattc
      481 ctccttatga taagtaaaca attacgggtc tatagtctat ggtttttatt gactatagct
      541 atcttgggca ggcgcaaggc ctgcccctac tatcgaccct tcttattatt ttttccctat
      601 ctgttcatac tgtttaaaaa ttcctcgtta gtcttagttt tggctaaacg ttcaatcaaa
      661 agctccattg cctccacatt atttaattca ttaagcacct tgcgcaatat ccagaccttg
      721 ttcaggtctt ccggccttaa caaaagctcc tcgtggcggg tattagagcg cttgatatcc
      781 agcgccggat atattctcct ctgaaacagg tttctgtcaa gctgaatttc catgttcccg
      841 gtgcctttaa actcctcaaa aatcacgtca tccatccggc ttccggtatc taccagcgcg
      901 gtagccagga tagtcaggct ccccccttct tccaccgagc gggcggcccc gaagaaccgc
      961 tttggtttct ggagggcgtt ggagtccacg cctccggaca atatctttcc gctgtgcggc
     1021 atcaccgaat tataagccct ggctaagcgg gtaatactgt ctaagagtat caccacatcc
     1081 tttttatgct caaccaagcg cttggccttt tccaggacca cctcggccac ctgaacatgg
     1141 cgctccggcg gctcatcaaa agtagaagaa ataacctcgc ccttaacaat acgctgcatt
     1201 tccgtgactt cctccggcct ctcgtcaatc aagaggacaa tcaggatcac atccgggtta
     1261 ttctgcataa tggagttagc cgtcttctgc agaagcacgg tcttgccgct gtaaggctgg
     1321 gctacgataa gcccgcgctg gcccttgcct atggggctca atagatccat aatccgcatg
     1381 gaaatctcat tgggcgtggt ctccaggaca aagcggttat gcggatatac cggggtaagg
     1441 ttgtcaaaga gtatcttttc ccggacattc tccggattct caaaattaac cgcttctacc
     1501 ttgagcaggg caaaatactt ttccccctcc ttaggcgggc ggatctgtcc gcttaccgta
     1561 tccccggtcc tcaagtcaaa cttacggatc tgcgagggag aaatatatat gtcatccggg
     1621 cagggaagat aattataatt gggggagcgc aggaagccga aaccgtcaga gagtatttcc
     1681 aataccccct ccccgaacat caatccgtct ttttccgcct gggcctgcag gatcttaaag
     1741 atcatatcct gtttcctgac cccgcttatc ccgtttacat taagctcctt ggccagcttg
     1801 tttaattccg taaccttcat ttccttcaat ttgccgatct ctactttttc cattcagtct
     1861 ccttaatgag cgctaaactt atggagctct gctttagcag agcgaacata agtttatgcg
     1921 cgaattaatc ccgaagcgtg cgaagtaaat ttcgcagaaa tttacgagtg cttacgcgag
     1981 ggaataacaa cttttctcca caacttcctt acctgtcttt ccgtatcact taacgagccg
     2041 ccgttatcaa tcacaaagtc agccagggca atcttttccc ttagcggcat ctgcagtcgt
     2101 atccgcttca aggcctcctg ccgggagatt gccagacttt gtttggcgcg ctccaattgt
     2161 tttcttaagg gagcttttac cactaccaga taatcacatt tcttgtgaaa ggcgctttca
     2221 atcagaagcg gggcgtcaat caccgccgtt ttatctttcc ccaggctttt aagctgacgg
     2281 agaatctctc tttttacaag aggatgcacc ttagcgcaaa gccgctggag agcctcgcgg
     2341 tcattaaaaa caacttcagc cagtttcttt cgcgcgggcc cgtctataat ccgatgtaca
     2401 atcttatccg cgtcaataac atacgccccg cgcttcttta acatcctggc cacggtagtc
     2461 ttgccgcatc ccaatccccc ggtcagtccg ataatcacca tatcctctgt tttgggcaga
     2521 cacaggggtc tgcccctaca gtcaaactct tatacagctc cagataccta ttcgcggatt
     2581 cattccaaga gaaatcataa gtaaaggcgt tcctgactaa
//
LOCUS       DATDUB010000159         2955 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_116366, whole genome shotgun sequence.
ACCESSION   DATDUB010000159 DATDUB010000000
VERSION     DATDUB010000159.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2955)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2955)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2955
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_116366"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..227
                     /locus_tag="VJA84_03220"
     CDS             <1..227
                     /locus_tag="VJA84_03220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011938632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41168.1"
                     /translation="EATRYHSLLVERKSLPKPLEITAWTKEKEIMGLRHKDYPLFGVQ
                     FHPESILTKVGKDILRNFLNVGADLRVCPK"
     gene            237..1247
                     /gene="trpD"
                     /locus_tag="VJA84_03225"
     CDS             237..1247
                     /gene="trpD"
                     /locus_tag="VJA84_03225"
                     /EC_number="2.4.2.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003517204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004048 - anthranilate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HLD41169.1"
                     /translation="MIKEAIIQLIEQKGLTQSQAKEAMEEIMRGETSPAQIAAFLTAL
                     RIKGESIDEITGSALAMRGFVKRINVDEDVVLDTCGTGGDIKHTFNISTVCAFIAAGS
                     GLTVAKHGNRAVSSRSGSADLLEALGVNINIDQNKVEQCLKNIGIGFLFAQSLHPAMR
                     FAAPVRRELGVRTIFNLLGPLTNPAFATHQLLGVYDARLLKVMARVLGNLGIRHAVVV
                     HGQDGLDEVTTTAVTLVCEFKNGRLRSYSLRPVDLGIKKAKLKDLEGGNARDNAEIAK
                     AILQGEKGPKRDIALLNAGCAIYTADKVKSIREAIELAKESIDSGNAWRKLEELRNFT
                     NS"
     gene            1450..2337
                     /gene="trpC"
                     /locus_tag="VJA84_03230"
     CDS             1450..2337
                     /gene="trpC"
                     /locus_tag="VJA84_03230"
                     /EC_number="4.1.1.48"
                     /inference="COORDINATES: protein motif:HMM:NF001377.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004425 - indole-3-glycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0006568 - tryptophan metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="indole-3-glycerol phosphate synthase TrpC"
                     /protein_id="HLD41170.1"
                     /translation="MTKDFLKEVLLEKQRAIKEAKRVYPEEELRLRMEEPRVWRPFKQ
                     AISAPGKLNIIAEIKRASPSEGVLRESFDHLQIARIYQNCGASAISILTEEKYFSGKI
                     AYLKQARKVVDLPILRKDFIFEPYQLYESKFFGADAVLLIAELLKDGKLAEFLAIARR
                     LELDCLVEVGNVQELEYAIGQGSEIIGINKRNLHTLEVSKTPDANLFGMIPEGRVIVA
                     ESGIKTNRDYLAYKKLNVNAVLIGSAFMKAEDIAKKFKEISEDKEPKKKPVLKKVKKP
                     SAKSGIRKKKPAVKKRKPD"
     gene            2288..>2955
                     /locus_tag="VJA84_03235"
     CDS             2288..>2955
                     /locus_tag="VJA84_03235"
                     /EC_number="5.3.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010943014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004640 - phosphoribosylanthranilate
                     isomerase activity [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylanthranilate isomerase"
                     /protein_id="HLD41171.1"
                     /translation="MGLEKRSRQSKKENRIKICGITNLEDALFAQGSGADALGFVFYP
                     ASPRYIRPEDARKIILRLNKKIIKVGVFVNPEAGQVKRIARLCQLDILQFHGDEAPDF
                     CHKFPSCKIIKAFRVKDKSSLSRLSDYRGAVDYYLFDAFSQKCLGGTGRKFNWGLLKM
                     AKIDKPFFLSGGLTPKNVVGAIKTVCPAWVDVSSGVEKYPGQKDQKKIKNFIDRVMSI
                     PLPLP"
BASE COUNT          803 a          628 c          815 g          709 t
ORIGIN      
        1 tcgaggctac ccgttatcat tctttgttgg tggaaaggaa gtctttgccc aagcccctgg
       61 agattaccgc ctggacgaaa gagaaggaga taatggggtt gaggcataag gattatcctt
      121 tatttggggt gcagtttcat ccggagtcaa tactgaccaa ggtgggtaag gatattttga
      181 gaaattttct aaatgtaggg gcagacctcc gtgtctgccc gaaatagaat ttgggaatga
      241 ttaaagaggc aattatccag ttaatagagc aaaaaggcct tacccaatcc caggcgaagg
      301 aggcaatgga ggagataatg cgcggcgaga caagccccgc gcagatagcc gcgtttttga
      361 ctgccctgcg gataaagggc gagagcattg atgaaatcac tggaagcgcc ctggcaatgc
      421 ggggatttgt caaaaggata aatgtggatg aggatgtggt attggatacc tgcggcactg
      481 gaggagacat caagcatacc tttaatattt ctactgtctg cgcctttatc gcggcaggaa
      541 gcggcctgac cgtggccaag cacggcaacc gcgcggtatc cagccgcagc ggcagcgccg
      601 accttttaga ggctttaggg gtgaatataa atattgatca gaataaggtt gagcaatgtc
      661 taaaaaatat cggcataggg tttctctttg cccagagcct gcatccggcg atgaggttcg
      721 cggcgccggt gcgccgggaa ttgggggtgc gcaccatctt taaccttttg ggccctttga
      781 ctaacccggc ctttgccact caccaactgc tgggggtcta tgacgcgcgc ctgttaaagg
      841 ttatggccag ggtcctggga aatttaggga ttaggcatgc ggtagtcgtc cacggtcaag
      901 atggactgga tgaggttact actaccgcgg ttactctggt gtgcgaattt aagaatggcc
      961 gtttgcgctc ttatagcctt cgtccggtgg atttgggaat taagaaggct aaactaaagg
     1021 atttggaagg cggaaatgcc cgggacaatg ccgagatagc taaagctatt cttcagggag
     1081 aaaaagggcc aaagagggat attgccctgc ttaatgccgg atgcgccatc tataccgcgg
     1141 acaaggtcaa gtcaatccgt gaggcaatag aattggcgaa ggagtccata gattcgggca
     1201 atgcctggag gaagctggag gaattaagaa attttacgaa tagttgagtg aggaaaatgg
     1261 gttctgccag ggttgtattt tcgcagggac attcggcttg ctcctgcggc aagcctcact
     1321 cggcgtaaat ttttgcgccc gccactgaag caatggcggg gccaagccgc aaaaatttcc
     1381 gtacgccctg cgaaaacaca accctgtcac ccatttcttc tggagtacta agcagataat
     1441 gtctttccta tgacaaagga tttcttaaaa gaggttttat tagagaagca gagggcgatt
     1501 aaagaagcta agcgggttta tcctgaagag gaactgcgcc tgcggatgga ggagccgcgc
     1561 gtctggcggc cgtttaaaca ggcgatatcc gcgccgggga agttaaatat tatcgccgag
     1621 ataaagcggg cctcgccttc agaaggggtt ttaagggagt cttttgacca tttgcagatt
     1681 gccaggattt atcagaactg cggggccagc gctatttcca tcctcaccga ggagaaatat
     1741 ttctccggca agatcgccta tctgaaacag gcgcgcaaag tggtagacct gcccatttta
     1801 aggaaggatt ttatctttga gccctaccag ttatatgaat ccaaattctt cggcgcggat
     1861 gccgtgcttt tgattgccga gctcttaaaa gacggtaaat tagccgagtt cctggctatt
     1921 gccaggagat tggaattaga ctgcttagtt gaggtgggca atgtccaaga actggaatac
     1981 gccatagggc agggctcgga gatcattggc atcaataagc gtaatctgca taccctggag
     2041 gtttctaaaa ccccggacgc gaacttgttt ggaatgatcc ccgaaggcag ggtgattgtg
     2101 gctgaatccg ggattaagac aaatcgggat tatctggctt acaagaaatt aaatgtcaac
     2161 gctgtcctga tcggaagcgc ctttatgaag gccgaagata tcgctaagaa atttaaggaa
     2221 atcagtgaag acaaagagcc taagaaaaag cccgtcctta aaaaagtcaa gaagccaagc
     2281 gcgaaaagtg ggattagaaa aaagaagccg gcagtcaaaa aaagaaaacc ggattaagat
     2341 ctgcgggata accaacctgg aagacgccct ttttgctcaa ggctccggcg cggacgcctt
     2401 gggttttgtc ttttatcccg caagcccccg ctatatccgg cctgaagatg cccgaaagat
     2461 aatcttacgc ctgaataaaa agattatcaa ggtgggggtt tttgtgaatc ctgaagccgg
     2521 acaggtcaaa aggatcgccc ggctctgtca attggatatc ctgcaatttc acggggatga
     2581 agctccggat ttctgccata aattcccttc ctgtaaaatc atcaaggcct ttagggttaa
     2641 agataagagc agtttaagcc gcttgtcaga ctatcgcggc gcggttgatt attatctttt
     2701 tgatgccttt agccagaagt gtctaggcgg caccggtagg aaatttaatt ggggattgct
     2761 taaaatggct aagattgata agccattctt tctttccgga gggcttactc ctaaaaatgt
     2821 ggtaggcgcc attaaaactg tttgcccggc ctgggtggat gtctcaagcg gggtagaaaa
     2881 ataccccggg caaaaggatc aaaagaagat aaagaatttc attgatagag taatgagtat
     2941 ccccctcccc ttgcc
//
LOCUS       DATDUB010000160         2957 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_2136855, whole genome shotgun sequence.
ACCESSION   DATDUB010000160 DATDUB010000000
VERSION     DATDUB010000160.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2957)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2957)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2957
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2136855"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..202)
                     /locus_tag="VJA84_03240"
     CDS             complement(<1..202)
                     /locus_tag="VJA84_03240"
                     /inference="COORDINATES: protein motif:HMM:NF025442.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4258 domain-containing protein"
                     /protein_id="HLD41172.1"
                     /translation="MIEDIRKAFKNKRYEYSLNAVDQSVLKHISQIEILEAIAKGKII
                     EDYPDDKYWPSCLVFGITELNRP"
     gene            complement(290..907)
                     /locus_tag="VJA84_03245"
     CDS             complement(290..907)
                     /locus_tag="VJA84_03245"
                     /inference="COORDINATES: protein motif:HMM:NF014625.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PIG-L deacetylase family protein"
                     /protein_id="HLD41173.1"
                     /translation="MNILAIGAHPDDIEFGCGGTLAKYAQKGHNIYMLVLTDGSYGGE
                     AEVRKKEQEESARYLRVKELFWGNIKDTELLESRRLIVAIEDIVNKVRPDIVFANYPE
                     DVHQDHRAASKAAVSATRYIKEVLFFEVPTTCGFDPDIFVDIEEVLGYKLRLLRLHSS
                     QVNKVKVADLTILQSAQSCANFRGYQGRVKYAEGFKALRLLREIT"
     gene            complement(1019..1834)
                     /locus_tag="VJA84_03250"
     CDS             complement(1019..1834)
                     /locus_tag="VJA84_03250"
                     /inference="COORDINATES: protein motif:HMM:NF024793.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HLD41174.1"
                     /translation="MYENYWGLKESPFENTPDPKFLYYSKEHEEGLSRLLYTLERRKG
                     AALLTGVFGCGKTVLARAFLNKINRNIYQVALINNPYLKLVEFLRSIARQLGAEGLPE
                     KLTEMSADHFLQVIESCLQNNAKDGRHTIVIIDEAHVITDNDIFEELRLLLNFQAEDK
                     FLLTLILMGQPELADKIRKNKQFTQRIALGYSLNPLTEEEMAHYISHRLKVAGCQKEI
                     FLASAMRSIFENSGGIPRRINQICDMCLMTGFSSLAKAVDENMVNEAVGSIGV"
     gene            complement(1951..2661)
                     /locus_tag="VJA84_03255"
     CDS             complement(1951..2661)
                     /locus_tag="VJA84_03255"
                     /inference="COORDINATES: protein motif:HMM:NF020463.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WbqC family protein"
                     /protein_id="HLD41175.1"
                     /translation="MIISVHQPQYLPWLGYFDKIDKSDAFVFLDCVQYKHREFQNRNK
                     IRVREGWLWLSAPVIYKGHSRERIDRILIDNGSDWQRKHWGSLKSAYSAAPFFKEHSA
                     FFEESYSRKWERLSELNIHIIKYILEYLTIDTPLYYESQIGTTREATERIIELCQKLQ
                     ADTYLSGAGGKEYLEEAKFARAGIKLEYQHFVHPEYRQQFAKQETDFLPYMSIIDLLF
                     NEGPESMNILRGEGRIKM"
     gene            2736..>2957
                     /locus_tag="VJA84_03260"
     CDS             2736..>2957
                     /locus_tag="VJA84_03260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41176.1"
                     /translation="MGGKVMFEQGVRKFWRLGPRHRRGAKIYAEFGLPQEQAECPCEN
                     ITLTGPIFTPIDYLLYLHKYRICNQHPAGI"
BASE COUNT          743 a          794 c          589 g          831 t
ORIGIN      
        1 acggccgatt caattctgtt atcccaaaca ccagacaact cggccaatat ttatcatccg
       61 gataatcctc tatgatttta ccttttgcga tagcctctaa tatttctatc tgggagatat
      121 gcttaagaac actctggtct acggcgttga ggctgtattc gtatcgttta ttcttaaacg
      181 cctttcttat atcttcaatc attcccagcc tcaacttgcc ttttggtttt tactttttcc
      241 cgcccattgc ttaacattcg gcgggatccc gctttcgcgg gagacttttt tatgttatct
      301 cccgaagcag ccttaaggcc ttaaacccct cggcgtattt gaccctgccc tggtaaccgc
      361 ggaaattggc gcaggactgg gcgctctgta aaatagtcag gtccgccacc ttcactttat
      421 tcacctggga agaatgcagc cttaataaac gcaacttata ccccaggacc tcttctatat
      481 ccacaaagat atccggatca aaaccgcagg tagtcggcac ctcaaaaaac aagacctctt
      541 ttatatacct ggtagccgag accgcggcct tggaggcggc ccggtggtcc tgatgcacat
      601 cctccggata attggcaaag acgatatccg gtcttacctt attgacaatg tcttctatgg
      661 ccacgataag cctgcggctc tccaatagtt ccgtatcctt gatattgccc cagaataatt
      721 ccttgacccg cagatacctt gccgattcct cctgctcctt tttcctcact tccgcctcgc
      781 cgccgtaact gccgtcggtc aggaccagca tataaatatt atgccctttc tgggcgtatt
      841 tggccagggt cccgccacag ccaaattcta tatcatccgg atgcgcccca atcgccaata
      901 tgttcatagt taatctcccc tcaaaactct aaatttaaaa caactatttt tgattttgag
      961 tttccgattt tttaagtttg tcattttgac ttttgaattt tgacttttga atttatcttt
     1021 atacccctat gctccccact gcctcattga ccatattttc atcaacagcc ttggcaagcg
     1081 aactaaaccc ggtcataagg cacatatcgc agatctggtt tatccggcgg ggaatgcccc
     1141 cggagttttc aaagatcgac cgcattgccg aggcgagaaa aatctccttt tggcagccgg
     1201 cgactttcag gcggtgagaa atataatgcg ccatctcttc ttcagtcaaa ggattcaggc
     1261 tgtagcccaa ggctatcctc tgggtaaact gcttattctt cctgatctta tccgccagct
     1321 ccggctggcc catcaaaatc aaggtgagca ggaatttatc ctccgcctgg aaattcaaca
     1381 atagccgcag ttcctcaaag atatcgttat cggtaatcac atgggcctca tcaataatca
     1441 ctatggtatg ccggccgtcc ttggcgttat tttgcagaca gctttcaatc acctgcagga
     1501 aatggtccgc ggacatttcg gtcaacttct ccggcaggcc ctcggcccct aactggcggg
     1561 ctatagacct taagaactcc accagcttaa gatacggatt attgatcaag gccacctggt
     1621 agatgttgcg gttgatttta tttaagaacg cccgggccag gacggtcttg ccgcagccaa
     1681 agaccccggt caaaagcgcg gccccctttc tcctttccag ggtataaagc aggcgggaca
     1741 gcccttcctc gtgttccttg gaataataaa ggaacttcgg gtccggcgta ttctcaaacg
     1801 ggctctcttt cagtccccaa taattttcat acatattttc ttccctcgga tagaatagcc
     1861 actctttaat gacaaataac aaaattcaaa gcacaaaata aattcaaaat caaaatgtca
     1921 aaacttggag ttggctttga catttgacat ttacatcttt attcttcctt cgcctcttaa
     1981 tatattcata ctctccggtc cttcattaaa gagcaggtct attatagaca tatacggcaa
     2041 gaaatccgtt tcttgtttgg caaactgctg acggtattca ggatgaacaa aatgttgata
     2101 ctccaactta atcccggccc gcgcgaactt cgcctcctcc agatactcct tgcctcccgc
     2161 gccggaaaga taggtgtcgg cttgcagttt ctggcaaagc tcaataatcc tctccgttgc
     2221 ctcccgcgtc gtgcctattt gcgattcata atacagcggg gtgtcaatag taagatattc
     2281 caggatgtat tttatgatat ggatattcaa ctccgagagc ctctcccatt tccgggagta
     2341 ggactcttca aagaacgcgg aatgctcttt aaaaaatggg gccgcggaat aagcgctctt
     2401 taaacttccc caatgcttcc tctgccaatc cgagccgttg tctataagta tccggtctat
     2461 cctctcccgg gaatgccctt tataaattac cggcgcgcta agccaaagcc aaccctcccg
     2521 gacgcggatc ttgttgcggt tctggaactc ccggtgctta tactgcacgc aatccaaaaa
     2581 gacaaaagcg tcggatttat ctatcttgtc aaaatacccc agccagggca gatactgcgg
     2641 ctgatgcacg gatataatca ttatttatac cataataaat tattaaatta aagctaaatt
     2701 tacctcgctt cgtttcacaa ccaacggaag taaaaatggg tggcaaggtt atgtttgagc
     2761 agggcgtacg gaaattttgg cggcttggac cccgccacag gcggggcgca aaaatttacg
     2821 ccgagttcgg cttgccgcag gagcaagccg aatgtccctg cgaaaacata accttgacag
     2881 gccccatttt tacccctatt gactatttac tttatcttca caaatatcgg atttgcaatc
     2941 aacatcccgc cgggata
//
LOCUS       DATDUB010000161         2570 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_955532, whole genome shotgun sequence.
ACCESSION   DATDUB010000161 DATDUB010000000
VERSION     DATDUB010000161.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2570)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2570)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2570
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_955532"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            162..1025
                     /locus_tag="VJA84_03265"
     CDS             162..1025
                     /locus_tag="VJA84_03265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41177.1"
                     /translation="MKINTILIFFISCFLSAATLTADEAGEWKELKGEHFIVYYLQNE
                     DFADDVLDKSEVYYSRIASELNYPRYSEFWTWDKRVKIYIHPNLESFLKATGQPQWSR
                     GMADYTNKQIISYAWSGGFLESLLPHEIAHLIFRDFVGFKSEIPLWLDEGVAQWAEEA
                     KRRESKRIINDLFAKNTLLSLPDMMRLDVRNIKDTEKMSLRSLRAKDGESGLLFLSGD
                     NLVNIYYVQAVSLVGFLIERQGAESFTVFCRQLRDGKPLEDALRAAYPLHIRNIQELE
                     NKWIEYLESKG"
     gene            1160..1870
                     /locus_tag="VJA84_03270"
     CDS             1160..1870
                     /locus_tag="VJA84_03270"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HLD41178.1"
                     /translation="MADKNILNVLVVDDEAVVRDLLKRFLNLLPVKAVIAAGGQEALE
                     LAKKEKFDLVFLDIRMPGMNGLEVFSEIRKIIPGAPCVFMTGYGSAEEELLNKIKDSN
                     IQCLRKPFEDLNLLKDIITKAASKVISPREPKEKRSSLRLDLALAVEYTLDGRLKKAV
                     SRNISLGGIRLLTDESLAVGTRLDLRLKNARRDKACLVKAEVVWVKSSDEKEGYFDVG
                     LKFIEININELSGLISRQ"
     gene            1888..2346
                     /gene="gspG"
                     /locus_tag="VJA84_03275"
     CDS             1888..2346
                     /gene="gspG"
                     /locus_tag="VJA84_03275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012765986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015627 - type II protein secretion
                     system complex [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system major pseudopilin GspG"
                     /protein_id="HLD41179.1"
                     /translation="MRDTNHGFTPPFLPGSRLNEGRAGFTLIELMLVVIIIGALAAMV
                     MPRLAGRGEQARVTAAKADILTNISTALKLYELDSGAYPVSEEGLEALLSKPSSANNW
                     NGPYLERRPIDPWNREYKYKSPGDHRPADYDLYSLGKDGQEGTADDVHNW"
BASE COUNT          677 a          529 c          715 g          649 t
ORIGIN      
        1 tacctggagc ttagcgtctt gagcaagata gccctggcag tctgagtcaa gaggggtcag
       61 acctcaagac tacaaaatgg taattaggat attatgagag tgcccttgtg actggcgctc
      121 tggtgcactc gtgattattg agttgatatg gagatttttg ggtgaaaata aatacaattc
      181 ttattttctt tatttcttgt tttctttccg cggctactct tacggctgac gaggccgggg
      241 aatggaaaga gttgaagggc gagcatttta ttgtgtatta cctgcagaat gaggattttg
      301 ccgatgatgt cctggacaag tccgaggtct attattcccg gattgcctcg gagctgaatt
      361 atccccgtta ttccgagttc tggacctggg acaagcgggt taagatatat atccatccga
      421 atctggaatc cttcctgaaa gccaccggcc agccgcaatg gtcgcggggt atggcggatt
      481 atacaaataa gcagataatc agctatgcct ggagcggcgg attcctggag tctttgcttc
      541 ctcatgagat tgcccatttg attttccggg actttgtggg ttttaagtcc gagatacctc
      601 tctggctgga tgagggggtg gcccagtggg ctgaagaggc caagaggaga gaaagcaagc
      661 ggataataaa tgaccttttc gcgaagaata ccctgctttc tttgccggat atgatgcgtt
      721 tagatgtaag gaatatcaag gataccgaga agatgtccct gcgctccctg cgcgccaaag
      781 acggtgaatc agggcttctt ttcttaagcg gcgataacct ggtgaatatc tattatgtcc
      841 aggcggtgtc tttggtgggt ttcctgattg aaaggcaggg agccgagagt ttcaccgtct
      901 tctgccgcca gttgcgcgac ggaaaacccc tggaagatgc cctgcgcgcg gcctaccctt
      961 tgcatatccg gaatatccag gaattagaaa ataagtggat tgaatatctg gagtctaaag
     1021 gttgatagcg tagtgcactg tgacgctaat tattgattcc cctcccttga tgggagggga
     1081 taggggaggg tgaaagttag aatttaatgt cacagcgcag tagtagcggc gcgatttatc
     1141 gcgcgaagag gattgaaata tggcggataa gaacatctta aatgtcttag tggttgatga
     1201 tgaagcggtg gtgcgggatt tgctcaaacg tttcctgaat ctcttgccgg taaaggcggt
     1261 tattgccgct ggcggccagg aggcccttga gctggccaag aaggagaaat ttgacttggt
     1321 attcttagat atccggatgc cggggatgaa cggtctggag gtatttagcg agattagaaa
     1381 gattatcccc ggggcgcctt gcgtatttat gaccggatat ggctccgctg aagaggaatt
     1441 gctgaataag ataaaggaca gcaatatcca atgcctgcgc aagccgtttg aggacctgaa
     1501 cctgcttaaa gacataatca ctaaagcggc ttccaaagtt atttcgccgc gagaaccaaa
     1561 agaaaaaagg tcttctctgc gcctggactt ggccttggcg gttgaatata cgcttgacgg
     1621 ccggctaaag aaagcggtga gccggaatat ctctttgggc gggataaggc ttttgacgga
     1681 tgagtcgctg gctgtgggga caaggctgga tttaaggctt aagaacgcgc ggcgcgacaa
     1741 ggcctgtctg gttaaggctg aagtggtctg ggtaaagtcc tctgatgaaa aagaagggta
     1801 ttttgatgtt ggcctgaagt ttattgagat aaatatcaat gagttatccg gtttgattag
     1861 ccggcaataa gataaggaga cgataaaatg cgcgatacga accatggctt caccccgccc
     1921 ttcctgccag gcagtagact gaacgaagga agggcggggt tcaccttgat tgaactaatg
     1981 ttggtggtga tcattatcgg ggccctggcg gcaatggtga tgccccggct ggccggaagg
     2041 ggcgagcagg cccgggttac cgcggccaag gccgacattc taactaacat atccaccgcc
     2101 ttaaagcttt atgaactgga tagcggggca tatcctgtca gcgaagaagg tttagaggcc
     2161 ttattaagca agccttcttc ggcaaataac tggaacggcc cgtatctgga gagaaggccc
     2221 atagacccct ggaaccggga gtataaatac aaatctcccg gcgaccaccg tcccgcggac
     2281 tacgacctct attctttagg caaagacggc caggaaggca ccgccgacga tgtccataat
     2341 tggtaaaaaa gaggtcagag tcaatttttg atatgcccag acagccaaga ttagtaatcg
     2401 cgggatatcc gcaccatttg attttaagag gtaataaccg caacgctatc ttttacaatg
     2461 acaaagataa gcgttttttt attagatgct taaaagacgc aaaagaaaaa acaaaatcca
     2521 aaatatacgc ctattgcacc gttaaataaa tttttatagg ttgaaggtgc
//
LOCUS       DATDUB010000162         3069 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_117439, whole genome shotgun sequence.
ACCESSION   DATDUB010000162 DATDUB010000000
VERSION     DATDUB010000162.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3069)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3069)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3069
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_117439"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..519
                     /locus_tag="VJA84_03280"
     CDS             <1..519
                     /locus_tag="VJA84_03280"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: protein motif:HMM:NF012439.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HLD41180.1"
                     /translation="AQEEAQKQKDQIVKEALGEKARVLEAAQVRVDEMIGQADKARQS
                     LLSEIENKIEEKALKRAIELLRQALPEQLRQEIHNRWIIDLISSSLEQLDRLRVDETV
                     TQARVVSAFSLSQEQAEALKLKIREKLGREVGLKEELEPEIISGLIVHIGSLVFDGSL
                     QARIQEIAYASK"
     gene            506..1984
                     /gene="atpA"
                     /locus_tag="VJA84_03285"
     CDS             506..1984
                     /gene="atpA"
                     /locus_tag="VJA84_03285"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR00962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000275 - mitochondrial
                     proton-transporting ATP synthase complex, catalytic sector
                     F(1) [Evidence IEA];
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HLD41181.1"
                     /translation="MLPNSQVSNNPSEVKFNVREAGSVRSVRECVLKVEGLPSAINGQ
                     IVELKQGGRGMIMGFNENDIQVLILNAKASLRSGDEIYSRGESLHLPVGDGFLGRVVN
                     ALCEPLDNRGAIKETALYPVFRDAPAVMDRVPLKETLETGTLLINAVIPIAKGQRQLL
                     IGDRLTGKTTIAVDAIINQKGKDVICVYCCVGKTQTSLMKLLNLLKLKGALEHSIVVS
                     AVASCSMGEQYLAPYTAAMLGEYFMYKGKSVLVVFDDLTRHAWVYRQICLLMERPPGR
                     EAYPGDIFYLHSQLVERAAHLKPELGSGSMTFLPICEILQGDVTGYVSSNLISMTDGQ
                     IYFNIGLFNKGIKPAIDFGLSVSRIGSKAQWPAMKALSERLKLEYIQYQELVQMTQLR
                     TTGLSKEAEEKIKRGQVITQLLVQDKNRPLPMEGEISLLFALSTGVMDNLPAADIKKF
                     KYEFLDKLQEWYPEVFSELRQTHVLGDVCIEKLYEALGKYFQ"
     gene            2157..3011
                     /locus_tag="VJA84_03290"
     CDS             2157..3011
                     /locus_tag="VJA84_03290"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: protein motif:HMM:NF012456.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0042777 - proton motive force-driven plasma
                     membrane ATP synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FoF1 ATP synthase subunit gamma"
                     /protein_id="HLD41182.1"
                     /translation="MKLLSHIKKDMEFNNSLYSLVEVLIAISISQYRILEKKTRSFEK
                     LFSALESFFALIDVENSRHPLINTADRAPGIIVVTSDSGLIGGLNVQAMNMAMKEART
                     TGAKLIVVGERGRLYAADSGIPFVSFKGVQDETRLAQAQQLRDYIMEQESALKLGGLK
                     IIFPRAFSIVSQQVQTLTLLPFSKVILSSVKAASGLGRDMILESSVDDIVGYLVYLFL
                     GHKFHEIFGFARLAELSARFVHLENSKTKIDQFNKQLKLQYFRQRHEVIDRNMREIFV
                     ARMTFNKG"
BASE COUNT          787 a          659 c          856 g          767 t
ORIGIN      
        1 gcccaggaag aggcccagaa acaaaaagat cagattgtca aagaagccct gggagaaaag
       61 gccagggttt tagaagccgc gcaggtccgg gtggatgaga tgatcggaca ggcggataag
      121 gcccggcagt ccttgttatc agagatagag aataagatag aagaaaaggc ccttaaaagg
      181 gccatagagt tactgcgcca ggctctcccc gaacagctaa ggcaggaaat ccataaccgc
      241 tggattattg acttgatttc ttccagcctg gagcagttgg accgcctgcg ggtggatgaa
      301 accgttaccc aggccagggt agtcagcgct tttagcttga gccaagagca ggctgaagcc
      361 ttgaagttga agatccggga gaagttaggc cgggaagtgg ggttaaaaga ggagcttgag
      421 ccggagataa tttcaggatt gatagtccat atcggcagtt tagtttttga cgggagcctg
      481 caggccagga tacaggaaat agcttatgct tccaaatagc caagtctcca ataatccttc
      541 ggaagttaaa ttcaatgtcc gggaggccgg aagcgtccgg tcggtgcggg agtgcgtgct
      601 gaaggtggag ggccttcctt cggcaatcaa cggccagatc gttgagctga agcagggcgg
      661 ccggggcatg attatgggtt tcaatgaaaa tgatatccag gtcttgatct taaacgccaa
      721 ggcctcttta aggagcgggg atgagattta cagccgggga gaatccctgc atcttccggt
      781 gggagacggt tttctgggca gggtagtgaa tgccttgtgc gagcctttgg ataaccgggg
      841 agcaattaaa gagaccgcct tatatccggt tttccgggat gccccggcag ttatggatcg
      901 cgtgccttta aaagaaacct tggaaaccgg gacactgctg atcaacgcgg tcatccctat
      961 tgccaagggg cagaggcagc tgcttatcgg cgaccggctt accggcaaga ccaccatagc
     1021 tgttgacgcc attattaatc aaaagggcaa ggatgtaatc tgcgtttact gctgtgtcgg
     1081 caagacccag accagcctga tgaaattatt gaatctgctt aaacttaaag gggcgttgga
     1141 acactccatt gtggtgagtg cggtggcttc ctgctctatg ggcgaacagt atcttgcccc
     1201 ttacaccgcg gcaatgctgg gggagtattt tatgtataag ggtaaatccg tgctggtagt
     1261 ctttgatgat ttgacccgcc atgcctgggt ttaccgtcag atctgcctgc tgatggagcg
     1321 cccgccggga agagaggcct atcccggaga tatcttttac ctgcattccc agttggtgga
     1381 aagggcggcc catctgaagc cggagttggg ttcaggttca atgacttttt tgccgatatg
     1441 cgagatactc cagggagatg ttaccggtta tgtctctagc aacctgatct caatgaccga
     1501 tgggcagatt tatttcaata tcggactctt taacaaaggg attaaaccgg caatagactt
     1561 tggtttgtcg gtttcccgta tcgggagcaa ggcccaatgg ccggcaatga aggccttgag
     1621 cgaaaggctg aaactggaat atatccagta tcaggaattg gtgcagatga cccagttgcg
     1681 cactaccgga ctttccaaag aggcggaaga gaagataaag cgcggccagg taattaccca
     1741 gctcttggtc caggataaaa accggccact gccgatggaa ggcgagatat cccttttgtt
     1801 tgccttgagc accggggtca tggacaatct gccggcggca gacataaaaa aattcaaata
     1861 tgaattttta gataaactcc aggagtggta tccggaggtt ttttcggaat tgcgccagac
     1921 ccatgtccta ggggatgtgt gcattgagaa gctatacgag gccttaggga agtatttcca
     1981 atgatgaggt taaaaattct aaattctaaa ccccaaactc taaacaaact caaaatcaaa
     2041 aactcaaaac cccaaacaaa agactgtttt gagtttatga ttttgtgttt tgaatttgtt
     2101 taggatttag tgtttagagt ttagggtttc aagagatttt atgctttgga tttacaatga
     2161 aattactttc ccacatcaag aaggatatgg agtttaataa cagcctctat agcctggtag
     2221 aggtcttgat tgccatttcc atatcccaat accgcatcct ggagaaaaag accaggtctt
     2281 ttgagaaatt gttcagcgcc ctggagtcat ttttcgcttt gatagatgtg gaaaattcaa
     2341 ggcatccgct gattaatacc gctgatcgcg ctcccgggat tattgtggtg acctcggatt
     2401 ccgggcttat cggaggcctg aatgtccagg caatgaatat ggctatgaaa gaggccagga
     2461 ctaccggggc aaaactgata gttgtcgggg aaaggggccg gctttatgcc gcggacagcg
     2521 ggataccttt tgtttctttt aaaggagtgc aggatgaaac cagattggcc caggcccagc
     2581 agttaaggga ctatattatg gagcaggagt cggccctgaa gctggggggg cttaagatta
     2641 tttttccccg ggccttttcc atcgtctccc agcaggtgca gaccttgacc ttgcttcctt
     2701 tttccaaagt catcctttct tcggtcaagg ccgcctccgg attgggcagg gatatgattt
     2761 tggagtcgtc cgtggatgat attgtcgggt atctggtcta tctttttctg gggcataagt
     2821 ttcatgagat attcggtttt gcccgcctgg ccgagctgtc cgcgcgtttt gtgcacctgg
     2881 aaaacagcaa gaccaagatt gaccagttta acaagcagtt gaagctccag tatttccgcc
     2941 agcgccacga ggtgattgac cggaatatgc gcgagatatt cgtggcccgg atgaccttta
     3001 ataaaggata aaaatatgga tactgccaaa aagcgcggtt atgtcatctc ggtgcagggg
     3061 ccggtagtg
//
LOCUS       DATDUB010000163         4460 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1952357, whole genome shotgun sequence.
ACCESSION   DATDUB010000163 DATDUB010000000
VERSION     DATDUB010000163.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 4460)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4460)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4460
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1952357"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(119..553)
                     /locus_tag="VJA84_03295"
     CDS             complement(119..553)
                     /locus_tag="VJA84_03295"
                     /inference="COORDINATES: protein motif:HMM:NF019934.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein"
                     /protein_id="HLD41183.1"
                     /translation="MRKAFTLIELLIVIAVISILIGIALPRFKGMQDEGNIAKAKGEL
                     RTLQAALESYYIHNNSAYPAALSSLTSAVPNMVSSIPADPFSTTGASYGYVQGGTNNK
                     FYVVYSVGPSANGSATITSNAVAETNGTSCIYASNAGQDAQP"
     gene            complement(571..1785)
                     /locus_tag="VJA84_03300"
     CDS             complement(571..1785)
                     /locus_tag="VJA84_03300"
                     /inference="COORDINATES: protein motif:HMM:NF012694.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HLD41184.1"
                     /translation="MPDYFYKARDDAGRLVSGTMSAASTDELTSRLRKMGYMAVSVTP
                     AAAKANSLRDISDNIMPVRLKDLTAFSFKLSNMLDSGLSILTSLRTIESQTENRKLKA
                     VAGDLCRQVEAGTLLSEGLSKHPRVFDRFLVNMVKAGEESGKLNEILRRYSLFLDDKQ
                     DLQEKIKGALFYPVLLFICAVGVILFMVTFVIPQFAELFLRSQIPLPGITKALFFLGM
                     GLKKYAYIFILGIGAAVFLLAKYIATKRGRYQLDVFLLRLPVIGPLLRKICVCRFAQT
                     LALLLSSGVVVLQSLDIVKEVIGNEVLAGVLAKTREAAEAGEKISESLRVSGEFPADA
                     VEMTAVGEESGNLDGALNKLGDFYNKETAYAIKRLTTLIEPLFLAVMGGIVGFIMLAV
                     LMPIFEMVKMLR"
     gene            complement(1973..3664)
                     /gene="gspE"
                     /locus_tag="VJA84_03305"
     CDS             complement(1973..3664)
                     /gene="gspE"
                     /locus_tag="VJA84_03305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013276679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015627 - type II protein secretion
                     system complex [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system ATPase GspE"
                     /protein_id="HLD41185.1"
                     /translation="MAKEKKTLPETLVEIGLLTAGQVKEAQREEKETGQPLRRVIVQK
                     GFISEDDLVAFLSSNMNLPRIELASYIIEPEVISLIPEELARKHQIVPVFKIGNSLTC
                     AMFDPLNIFAIDEVRNKIGFDIDPAVATEKEIKRALDEYYSAKGNIQDIIKTIDKERL
                     GLKDGQELELKKLQEISGEAPVVRLVNLMIMQAVHDAASDIHIEPDEEDLKVRCRVDG
                     ILHDYPAIPKYLQSALSSRIKVLANLNIAERRAPQDGQFQMKMENRQIDIRVSAVPTI
                     YGENLVLRLLDRGTIILSLSELGFAKDVQDKYEKIIRRPYGIILVCGPTGSGKTTTLY
                     SSLHLINSKEKNIITIEDPVEYRLNGIRQTQLDPKAGVSFSAGLRSMLRQDPDIIMVG
                     EIRDKETAEIAIQAALTGHLVLSTLHTNDAAGAITRLIDMGIEPFLISSSLNAVLSQR
                     LIRLVCKDCKEEYSPSEEVLKKMGLAGQRDIKFARGKGCMRCKDSGYKGRIGIFELMI
                     VDDKLRALIASKAPREEIKRSAESAGMLSLKEDGFNKVKERITTLEEVLRFTQEE"
     gene            complement(3883..4254)
                     /locus_tag="VJA84_03310"
     CDS             complement(3883..4254)
                     /locus_tag="VJA84_03310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020257930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HLD41186.1"
                     /translation="MEKKRILLVDDETDLVEMVKFRLEANDYEILTAGDGQAALEIAR
                     KERPDLIILDVMLPKMDGYKVCGLLKKDTRYANIPIMMFTAKATETDVKLGSEVKADA
                     YLTKPFEPKVLLEKIKELVKG"
BASE COUNT         1074 a         1291 c         1013 g         1082 t
ORIGIN      
        1 caaagacaaa aacccggaca ccatcaagac aaccgccatc attacttcaa gaagagtaaa
       61 acctttatta cggctaatag acctgagcga gaaaaccgat aggtccatta gctttatttt
      121 acggctgcgc atcctggccg gcgttggagg catagataca gcttgtgccg ttggtttcgg
      181 ctaccgcgtt gctggttatg gtggcgctgc cgttagcaga ggggcccacg gaataaacca
      241 cataaaactt attattggtc ccgccctgga catagccgta gctggccccg gtagtggaaa
      301 aagggtcggc gggaatggaa cttaccatat tagggaccgc cgaggtaaga ctgctcaagg
      361 ccgcgggata ggcgctatta ttgtggatat aataactttc caaagccgcc tggagggtcc
      421 ttaattcgcc tttggccttg gcgatattgc cttcatcctg cataccctta aaacggggca
      481 gggcaatccc gattaaaata gaaatcaccg cgatcacaat caacaattca atcaaggtaa
      541 acgcctttct cattttctct cctcctttta tcatctcaac atcttaacca tctcaaaaat
      601 cggcatcagc accgccagca taataaaacc aactattcca cccataaccg ccaggaacaa
      661 aggctcaata agggtagtca atctcttaat cgcgtaggca gtttccttat tataaaaatc
      721 ccccagctta ttcagcgccc cgtccaggtt cccgctttcc tcgcccaccg cggtcatctc
      781 cacggcatcc gcgggaaact cacccgagac ccgcaggctc tcggaaatct tctcccccgc
      841 ctccgcggcc tcccgggttt tggccagaac cccggccagc acctcattgc cgatcacctc
      901 ctttacaata tctaaagact gcaggaccac caccccgctg gataagagca aggccagggt
      961 ctgcgcgaaa cgacagacac aaatcttcct caatagcgga cctatcaccg gcaggcgcag
     1021 caagaagaca tccagctgat atctgcctct cttagtagcg atatacttag ccagcaaaaa
     1081 gaccgccgcc ccaatcccca ggataaagat ataggcgtat ttcttaagcc ccatccccag
     1141 gaaaaacaag gccttagtta tccccggcag agggatctgg gaacgcagaa aaagctcggc
     1201 gaactgcgga atgacaaagg taaccataaa cagaattaca ccgaccgcgc agataaaaag
     1261 caggacagga taaaaaagcg ccccttttat cttctcctgc aaatcctgtt tatcatccaa
     1321 gaacaaagaa taacggcgca ggatctcatt taatttaccg gactcctccc cggccttgac
     1381 catattcacc aggaaacggt caaacacccg gggatgcttg gacagcccct cggaaagcag
     1441 ggtccccgcc tccacctgac ggcagaggtc cccggcgacc gccttcaact tccggttttc
     1501 agtctgcgac tcaatagtgc gcagggaagt taagatggaa agaccggaat caagcatatt
     1561 ggaaagcttg aaactgaaag ccgtcaggtc cttgagcctt accggcataa tgttgtccga
     1621 aatatcccgc aggctgttgg ccttagccgc ggctggcgtg actgaaaccg ccatatagcc
     1681 catcttgcgc agacgggagg taagctcatc cgtagaggcc gcgctcattg tgccgctgac
     1741 taatctgccg gcgtcatccc tggccttata aaaataatcc ggcatagtgc tccgttaact
     1801 taattcttat tggcctagcg aaagttaact ccgcacttcc gctagggggg caagcccccc
     1861 ttcggcgctc actgcgttcg ctgagcaccc cccaaacgtg ggggacgatc tcccccacgc
     1921 cccctttaat gcaccgttaa cctataaaaa tttatttaac ggtgcattac tcctactcct
     1981 cctgggtgaa acgcaagacc tcttccaagg tggttatcct ctcctttact ttattgaaac
     2041 catcctcctt caggctaagc ataccggcgc tctcggcgga ccttttaatc tcttccctcg
     2101 gggccttgga ggcgataagg gcgcgcagtt tatcgtcaac tatcatcagc tcaaatatcc
     2161 cgatcctccc cttataacct gaatctttgc atctcataca gcccttgccc cgggcaaact
     2221 ttatatccct ctgccctgct aaacccatct ttttcaacac ctcttcagac ggggaatatt
     2281 cctccttgca gtctttgcag accaaccgga tgagcctctg ggacaggacc gcgttcaagg
     2341 aagaagagat caaaaacggc tctatcccca tatcaatcag ccgggtgatt gccccggcgg
     2401 cgtcattggt atgcagggtg gataaaacca agtgcccggt aagcgccgcc tggatggcta
     2461 tctcggcagt ctccttatcc cggatttccc ccaccattat tatgtccgga tcctgccgga
     2521 gcatagacct taaccccgcg gagaaactca cccccgcctt cgggtccaac tgggtctgac
     2581 ggatgccgtt taagcggtat tccaccgggt cttcaatagt gatgatattc ttttctttgg
     2641 aattaatcag gtgcaaggaa gaataaaggg tggtggtctt gccgctgccg gtagggccgc
     2701 agactaaaat aatcccgtaa ggccggcgga taattttctc gtatttatcc tggacatcct
     2761 tggcaaatcc taattccgaa aggctcaaga taatagtgcc ccggtccaag aggcgcagga
     2821 ctaagttttc cccgtaaata gtgggcactg ccgagacccg gatatctatc tggcggttct
     2881 ccatcttcat ctggaactgt ccgtcctggg gggcgcggcg ttcggcgata ttcaggttcg
     2941 ccaggacctt gatccgcgaa gaaagggcgg actgcagata tttgggtatg gccgggtaat
     3001 catgcaggat gccgtccact cggcacctga ccttaagatc ctcctcatca ggttcaatat
     3061 ggatatcgct tgccgcgtcg tggactgcct gcataatcat caggttaact aagcggacta
     3121 ccggggcctc tccggagatc tcctggagct tcttaagctc cagctcctgc ccatccttta
     3181 gccccagcct ctccttgtca atggtcttga tgatatcctg gatattgcct ttggcgctat
     3241 aatactcatc cagggcccgt ttgatctctt tttccgtggc cactgccggg tcaatgtcaa
     3301 aaccgatctt attgcgcact tcgtcaatgg caaagatgtt taagggatca aacatcgcgc
     3361 aggtcaggct gtttcctatc ttaaacacag ggacaatctg gtgcttgcgg gccagttctt
     3421 caggaataag agaaatcacc tccggttcaa taatataact ggccagctca atccggggga
     3481 gattcatatt gctggacaag aaggccacca ggtcatcctc gctgataaaa cccttttgca
     3541 cgatgaccct tcttaaaggc tggccggttt ccttttcctc tctttgggcc tcctttacct
     3601 ggccggcagt caacaacccg atttccacca aggtttccgg cagggtcttc ttctctttag
     3661 ccatatccgt tatccttgta accggtcagt ggacgggggc gtgtcattgc gagcgaacga
     3721 agtgagcgaa gcaatcccga cggagattgc gcagcctgtt ccgagcgaag cgaaggaatc
     3781 cagttgcgag gggctgctgg tttgcttcgg cttcgcctcg caaccgctca cgctcctcgc
     3841 aatgacaaat cccgctaaat cctccaataa ctgacgcatt acttatcctt taaccaattc
     3901 cttgatcttt tccagcaaga ctttgggctc aaaaggcttg gtaaggtagg catccgcctt
     3961 aacctccgag cctaatttga catccgtctc cgtggccttg gccgtaaaca tcattatcgg
     4021 gatattggcg taacgggtgt cttttttaag caggccgcag accttgtagc cgtccatctt
     4081 gggaagcatc acatctaaga taatcaggtc cggcctctcc tttcgggcaa tctccagggc
     4141 ggcctggccg tcgccggcgg tcaggatctc ataatcatta gcctccaggc ggaacttgac
     4201 catctccacc aaatccgtct catcatccac caaaagaatt ctttttttct ccattttcaa
     4261 aattctccaa atttctctta gttcttagct cttaattctt agctctgtat ttatccgcca
     4321 cccttaatac agcgttgaca ttctcgatct ctttctgcag gtcgctggtc ttgacgatat
     4381 atccggacgc ccccagctca ttggccaggc tgaaatttat cttgtccgaa taggcggtga
     4441 gcataaagac cggcaattgc
//
LOCUS       DATDUB010000164         3065 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_958427, whole genome shotgun sequence.
ACCESSION   DATDUB010000164 DATDUB010000000
VERSION     DATDUB010000164.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3065)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3065)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3065
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_958427"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..689)
                     /locus_tag="VJA84_03315"
     CDS             complement(<1..689)
                     /locus_tag="VJA84_03315"
                     /inference="COORDINATES: protein motif:HMM:NF024785.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase regulatory
                     subunit"
                     /protein_id="HLD41187.1"
                     /translation="MIFKSPAGMKDLLPEEAFLWQNLEKKAREVFALCGYQPIRTPVV
                     EYSSLFDRSLGQETEVVKKQMFLIQREEETYCLRPEATAAVVRAYLENGLDKTNQFSK
                     LYYLGAMFRSERPQKGRLRQFHHIGVEALGSVSPYLDAEVIALAVRLLDEFGISGYQF
                     KLNSLGCRDDRQRLSNILRERLTPQREGLCPDCQERFSRNIFRVLDCKNEGCKNIVSG
                     LKLECADYLCQG"
     gene            complement(686..958)
                     /locus_tag="VJA84_03320"
     CDS             complement(686..958)
                     /locus_tag="VJA84_03320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020258105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0030261 - chromosome condensation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HLD41188.1"
                     /translation="MTKKDIALKVADATGIRQIVVKKVLEGIFDCIVESLLRDEKIEL
                     RNFGVFKVKTRRPRIGRNPRTGQIVPVPTRKVVVFKPGLEMKQKIR"
     gene            complement(1182..>3065)
                     /gene="dnaE"
                     /locus_tag="VJA84_03325"
     CDS             complement(1182..>3065)
                     /gene="dnaE"
                     /locus_tag="VJA84_03325"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:TIGR00594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HLD41189.1"
                     /translation="DKPLTNYVPLFKADEQVTTQYSMESLEKIGLLKIDFLGLRTLTV
                     IQRAGQIIKKRHNADVDTDNIPLDDLKTFELLGLAQTLGVFQLESNGMRDLLKKIRPS
                     QFEDLIAILALYRPGPMGSGMLEDFIRRRNKQQAVRYESKKMEPILSSTYGIMVYQEQ
                     VMRIASDLGGFSLAQADLLRKAMAKKIPEVLERQRANFVEGCKKNGIREQSANKIFDQ
                     IEYFSGYGFNKSHSAAYALISYRTAWLKANYPVEFMAALLTSEKDNTDKVVEYVNECQ
                     KMGIEVMPPDINESRDIFTVIDDKVIRFGMIAVKNVGQGAIESILKARDGVGRFKSLE
                     DLCKNIDLRLVNKKVIESLIKAGAMDSFKQPRARLMLGLEQTLESSSKVQKEKASGQL
                     SFFDLGRDNGFSGSSAELPQVREWPEPQLLAFEKEMLGFYVSGHPLARFSSQLKRFSL
                     CSISHLPEYKDGDTVKLAGLIVKIKNTVTRKSQEKMAILKLEDLNGDIEVLVFPEAYK
                     QHCRHIQPNSVVLVQGRLNLKEEVPKIIANSIAPLEDAYKQITKIDVDIAGIKENLLV
                     SLKERFKQFSGQTPVYLHHIDSATRARYQILVSDDLYVQPSLDLIQEMENLLGQEKFS
                     LTF"
BASE COUNT          770 a          823 c          695 g          777 t
ORIGIN      
        1 ccctggcaaa gataatccgc gcattctaat ttcaggccgg aaactatatt tttacaccct
       61 tcatttttac agtccaggac ccggaagata ttccggctga aacgctcctg acaatccggg
      121 cacaagcctt ctctttgagg agtcaacctt tcccgcagga tattgcttag cctctggcgg
      181 tcgtcacgac agcctaaact gtttaattta aactgataac ccgagatgcc gaattcatcc
      241 aagagccgga cggctaaagc gatgacctcg gcatcaagat acgggctgac tgaccccagc
      301 gcctctaccc cgatatgatg aaactgcctt aagcggccct tctgcggccg ctcggagcga
      361 aacatcgctc ccagataata aagcttgctg aactgattag tcttgtctaa gccgttttcc
      421 agataggccc tgactaccgc ggcggtggcc tccggcctca aacagtaagt ttcctcctcc
      481 cgctggataa gaaacatctg tttcttgact acctcggttt cctggcccag ggaacggtca
      541 aacaaagagc tgtattccac aaccggggta cggataggct gatagccgca gagagcgaat
      601 acttccctgg cttttttttc cagattctgc caaagaaagg cctcttcagg caggaggtcc
      661 ttcatcccgg caggagattt aaaaatcatc taatcttctg tttcatctcc aggccgggct
      721 taaagactac taccttacgg gtagggaccg ggacgatctg gccggtgcgg ggattcctgc
      781 cgatgcgggg acggcgggtc ttgaccttaa atacgccgaa gttgcgcaat tctatcttct
      841 catcgcgaag caggctttcc acaatgcagt caaatattcc ttctaagacc ttcttcacga
      901 ctatttgtct tatgcccgtg gcatcagcta ctttgagagc tatatctttc ttggtcataa
      961 gattacctcc ggattcaccc cgttagagag agaatttctc tatcggggtt tactcgtatc
     1021 aggaaaatcc ccctgttttt atatcaaggc ccacctaacc ccgcaccttt tagccattca
     1081 aattctccag gatcccccag aaattattaa atataaaaac tgaatacaaa aaaaggtgcg
     1141 gggctaaccc ttttaatatc aataagttta acagaaataa attagaaggt caaggaaaat
     1201 ttctcctggc ccaggagatt ttccatttcc tggatcaggt caaggctggg ctggacatag
     1261 aggtcatccg agactaatat ctgataacgg gcgcgggtag cggaatcaat atgatgcaga
     1321 taaaccgggg tctggccgga aaattgctta aacctctcct tcaggctgac caaaaggttc
     1381 tcttttatcc cggcgatatc aacatctatc ttggttatct gtttataggc gtcttccaga
     1441 ggagctattg agttggcgat aatcttaggg acttcctcct taagattcaa cctcccctgg
     1501 accaggacca cactgttagg ctggatatga cggcaatgct gtttataggc ctccgggaaa
     1561 accaggacct caatatcgcc gtttaaatcc tcaagcttta agatcgccat cttttcctgg
     1621 gatttacggg taacggtatt ttttatcttc acaatcagcc cggccaattt cactgtatcc
     1681 ccgtctttat attcaggaag atgcgaaatg gaacacaggg aaaacctctt cagctggctg
     1741 gaaaaacggg ccaaaggatg gccgctaacg taaaaaccca gcatctcttt ctcaaaggcc
     1801 aaaagctggg gctccggcca ttcccggact tggggcaatt ccgcggaaga accgctaaaa
     1861 ccgttgtcgc ggcctaagtc aaagaaagaa agctggccgc tggccttttc cttctggact
     1921 ttagatgagc tctccagggt ctgttccagg ccgagcataa gcctggcccg gggctgttta
     1981 aaagaatcca ttgccccggc cttaatcaaa gactctatca ccttcttatt cactaagcgc
     2041 aggtcaatat tcttgcagag atcttccagg gacttaaacc tgcccactcc atcccgcgcc
     2101 ttcaggattg attctatcgc cccctggccg acattcttga cggcaatcat cccgaaacgg
     2161 atgaccttat cgtcaataac cgtaaagatg tcccgggact cattgatgtc cggaggcatg
     2221 acctctatgc ccatcttctg gcattcattg acatattcca cgaccttatc ggtattatcc
     2281 ttttccgagg tcaggagcgc ggccataaat tctaccggat agttggcctt gagccaggcg
     2341 gtgcggtaag aaatcagggc ataagcggcg gaatgtgatt tattgaagcc gtaaccggaa
     2401 aaatattcta tctggtcaaa gattttattg gctgactgct cccggatccc gtttttctta
     2461 cagccttcca cgaagtttgc cctctggcgc tccagcactt ccgggatctt cttggccatc
     2521 gccttgcgca gaaggtcagc ctgggccagg gaaaacccgc ccaggtccga ggcaatccgc
     2581 attacctgct cctgatagac cataatcccg taagtggagg aaagtatcgg ctccatcttc
     2641 ttggattcat agcgcacggc ctgctgttta ttgcgccggc ggataaaatc ctcaagcatg
     2701 cccgagccca tagggccggg ccggtagaga gctaagatgg cgatcaaatc ctcaaactgc
     2761 gaaggacgga tcttcttcag cagatccctc atcccgttag attccagctg aaacacccct
     2821 aaggtctggg ccaaacccaa aagctcaaag gtctttaaat catctaaggg aatattatcc
     2881 gtatccacat ccgcgttatg tcttttcttg attatctggc cggcgcgctg gatcaccgtg
     2941 agggtgcgca ggcccaggaa atcaatcttc aacaaaccga tcttctccag gctctccata
     3001 gaatactggg tagtcacctg ttcatcggcc ttaaacaagg ggacataatt ggtaagcggc
     3061 ttatc
//
LOCUS       DATDUB010000165         2322 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1308648, whole genome shotgun sequence.
ACCESSION   DATDUB010000165 DATDUB010000000
VERSION     DATDUB010000165.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2322)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2322)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2322
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1308648"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            126..899
                     /locus_tag="VJA84_03330"
     CDS             126..899
                     /locus_tag="VJA84_03330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020257473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042578 - phosphoric ester hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00282 family metallophosphoesterase"
                     /protein_id="HLD41190.1"
                     /translation="MKILFIGDIVGSPGREAVKVLVPKLKKEKAIDLVIANAENSSGG
                     TGLTPKSAEELLGYGCDCLTSGDHIWKLKEVFKIIDHPYILRPLNLAPAVPGRGYCIL
                     KKNNFKLGVINLQGRVFMPAIDCPFRAVREALPQIKKETNAILVDIHAEATSEKVALG
                     YFLDGQVSAVAGTHTHIQTADEKILPQGTAYITDAGMCGPYDSVIGQEKGRIIERFLS
                     GMPVKFEVALGDVQLHGVVIDIDENTGKAIKIEMIQEKL"
     gene            1033..2256
                     /gene="xseA"
                     /locus_tag="VJA84_03335"
     CDS             1033..2256
                     /gene="xseA"
                     /locus_tag="VJA84_03335"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010942411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009318 - exodeoxyribonuclease VII
                     complex [Evidence IEA];
                     GO_function: GO:0008855 - exodeoxyribonuclease VII
                     activity [Evidence IEA];
                     GO_process: GO:0006308 - DNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HLD41191.1"
                     /translation="MRIEKKGLKEEKRIFTVSELTEDIKILLENTFPEVWVEGEISNF
                     SLSQSGHMYFNLKDAKSSLRCVFFRGANSGLKFSLKDGLHCIAFGRINVYVPSGQYQL
                     NIQRIEPKGAGALQLAFEQLKEKLAKEGVFEESHKRPLPGLPLRVGVVTSPTGAAIRD
                     ILNILKRRAPFVKIILNPVRVQGQGAGEEIARAIEEFNDYKEVDVLIVGRGGGSLEDL
                     WAFNEEVTARAIYNSRIPVISAVGHEVDWTIADFSADLRAPTPSAAAELVVRQKEDLA
                     HELEHCFVRMRRAVENKIGILSRELLRLKNAYVLKYPLNFIQVYLQKIDELNHRLVQK
                     AGHILEVEGHRWTSLTEKLEALSPLKVLSRGYSITFKLPGLEVVTDVRGISAGDRIQT
                     RLKDGSLVSEVVSKK"
BASE COUNT          610 a          512 c          649 g          551 t
ORIGIN      
        1 taaagtgtca ttgcgaggca cgaagtgccg aagcaatccc gtcgcaagag attgcttcgc
       61 ttcgctcgca atgacgctaa ttaggacagc aatgaccata gaccatagac tatcgaccca
      121 aagctatgaa aatattattt atcggtgata tagtgggctc tccggggaga gaggcggtca
      181 aggtcctggt ccctaagctg aagaaggaaa aggcgataga cttagtcatt gccaatgccg
      241 agaattcctc cggaggcaca ggcctgaccc ccaagagcgc ggaagagctc ttgggttatg
      301 gctgtgactg cctgaccagc ggcgaccata tctggaagct caaagaggtc tttaagatta
      361 ttgatcaccc ttatatcctt agacccttga atctggcccc ggctgtccca ggccggggat
      421 attgtatcct taagaaaaac aactttaagc tgggggtgat taaccttcag ggccgggtat
      481 ttatgccggc catagactgc cctttccggg cagtgcggga ggccctgccg cagataaaga
      541 aagagactaa tgccatactg gtggatatcc acgccgaggc caccagcgag aaagtggcgc
      601 tgggctattt tttagacggc caggtctcgg cagtagccgg cacccatacc catatccaga
      661 ccgcggacga aaagatcctg ccccagggca cggcctatat tacggacgcc gggatgtgtg
      721 ggccttatga ctcggtaatc ggtcaggaaa agggccggat tattgagagg tttcttagcg
      781 gtatgccggt gaagtttgag gtggctctcg gcgatgtcca gctgcacggg gtagttattg
      841 atatagacga gaatacaggc aaagcgatca agattgagat gatacaggag aagctctaaa
      901 ccccaaacac taaattctaa ataaactcaa aacccaaagc tcaaaatcca aaaatagatg
      961 tttttgagtt tgtgattttt aattttatgt ttatttagag tttaggattt cggatttagg
     1021 gtttatcata ttatgcgtat cgaaaagaaa ggtttaaaag aagaaaagcg gatttttacg
     1081 gtcagcgagc tgaccgagga catcaagata cttctggaaa acacctttcc cgaagtctgg
     1141 gtggaaggcg agatttccaa tttctcactg tcgcagtcag ggcatatgta ttttaacctc
     1201 aaagacgcga aaagctcttt gcgctgtgtg ttcttccgcg gggcaaacag cggattaaag
     1261 ttttccttaa aagacggact gcattgcatt gcctttggcc ggattaatgt ttatgtcccc
     1321 agcggccagt atcaattaaa catccagcgg atagaaccaa agggcgccgg ggccctgcaa
     1381 ttggcctttg agcagttaaa ggaaaaatta gctaaggagg gggtgtttga ggaaagccat
     1441 aaaaggccgc ttcccgggct tcctttaagg gtaggcgtgg ttacttctcc caccggcgcg
     1501 gcaatccggg atatattgaa tattttaaaa cgccgggccc cgtttgtgaa gataatctta
     1561 aatccggtca gggtccaggg gcaaggcgcc ggcgaagaga ttgcccgggc aatagaagaa
     1621 tttaacgatt ataaagaagt agatgtctta atcgtaggcc ggggcggagg gagtttagag
     1681 gatttatggg cctttaacga agaggttacc gccagggcca tatacaattc ccgcatcccg
     1741 gtaatcagcg cggtaggcca tgaggtggac tggaccattg ccgactttag cgctgacctg
     1801 cgcgccccta cgccttcggc ggcggcagag ctggtggttc gccagaaaga ggatttggct
     1861 catgagcttg agcattgttt tgtccggatg cggcgcgcgg tagaaaataa aataggcata
     1921 ttaagccggg aactgcttag gcttaagaat gcctatgttt tgaaatatcc ccttaatttc
     1981 atccaggttt atctgcaaaa gattgatgag ctgaatcacc gcttggttca aaaggccggg
     2041 catatcctgg aggtggaggg gcacaggtgg accagtttaa ccgagaagtt agaggcctta
     2101 agcccgttaa aggtcttatc ccgtggctac agcattacct ttaaactccc gggtctggag
     2161 gtggtgacgg atgtccgcgg aataagcgcg ggagacagga tccagacccg gcttaaggat
     2221 gggagcctgg tgagcgaagt ggtatctaag aagtagcggt gcgatttatc gtatcctggc
     2281 ggactgcgtc agctgttccg tgctcaaaca tcctcggcgt tt
//
LOCUS       DATDUB010000166         2946 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1465350, whole genome shotgun sequence.
ACCESSION   DATDUB010000166 DATDUB010000000
VERSION     DATDUB010000166.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2946)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2946)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2946
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1465350"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(284..880)
                     /locus_tag="VJA84_03340"
     CDS             complement(284..880)
                     /locus_tag="VJA84_03340"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HLD41192.1"
                     /translation="MLTLKELVNRCIAKNKSAWSEFVFRFRPLVERCARIQLSRHNFS
                     YTIEDIKDIVQGVFLDIWEKNKLALVKDQDKISGWIAIVSQNAAISFIRSQAKFSRQR
                     SVCAVEEGGLNDILNILPSGTSLSRELAKEDMALAVDKLIEALKPREKLVLRLNIQHN
                     QTHREIAYFLNLPINTVSSILRRTMISFREDLKKKGYI"
     gene            complement(852..1895)
                     /locus_tag="VJA84_03345"
     CDS             complement(852..1895)
                     /locus_tag="VJA84_03345"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014425166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004107 - chorismate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_process: GO:0008652 - amino acid biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HLD41193.1"
                     /translation="MLRYLTAGESHGRALMAILEGLPAGLRVEKEKIDAELSRRQEGY
                     GRGARMRIEKDRVEILSGLYKGRTIGSPLGMLIENRDFSIERQEAIFNPRPGHADLAG
                     LLKYGFADARPVLERASARETASRVAVGAVCKIFLAEFKVMINSKVTAIGGETSEKAR
                     QRIIDQAISKKDSLGGVFELKVKGLLAGLGSYVQPDKRLNARLGQAVMSVPGIKAVEF
                     GLGCECAGRFGSQVHDAIYYSKENGYYRKTNNAGGIEGGISNGEDIVLRGYMKPIATL
                     NKPLKSVDIRTKKTVLASIQRADTCAVQAAGVVAEAMCALEIANALLDKFGGDCLPDI
                     KQAFGAYLKRISQ"
     gene            complement(1964..2329)
                     /locus_tag="VJA84_03350"
     CDS             complement(1964..2329)
                     /locus_tag="VJA84_03350"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HLD41194.1"
                     /translation="MAKNILVVDDDGMVTRSLCGLLKKSGYSADASGDGFDAIEKVQD
                     THIDLIVIDLRMPGMDGVQTVKKIKEIIKSRNKADIPVIFITGYADSELYTQAKGLGR
                     VLVKPLDNKDLLEGIEEYI"
     gene            complement(2427..2864)
                     /locus_tag="VJA84_03355"
     CDS             complement(2427..2864)
                     /locus_tag="VJA84_03355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012648124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HLD41195.1"
                     /translation="MLSYLEYIIHKIQQGPFITVDIIIELSAGIVLIERSNPPYGWAI
                     PGGFLDYNESLEDCAIREAKEETSLDIYDLKQLHTYSKPGRDPRFHTVTTVFTAKGKG
                     TPKADSDAANLKVFKPQEALKLDLAFDHKQVLQDYLNSNRGPT"
BASE COUNT          703 a          824 c          620 g          799 t
ORIGIN      
        1 atcttttctc tctggcttga agatactgtc ttatccaaat atttgcccag ctcaagttcc
       61 gatggacagg cgggggtctt tttgaggtca agatgatctt ggtttaggct ttcttttatc
      121 agcttttcta atttttccat attctttagc ctccgtcggg attgcttcgt cgtcccgctt
      181 cgcggggctc ctcgcaatga ctattgacca tagactattg acccttaatt ctttctctac
      241 ttattaagac gcgcgaaccg gctgttttcg tgcaaaaata ttttcagata tatccctttt
      301 tcttcaagtc ctctctaaaa ctgatcattg tccggcgcag gatgctggaa acagtgttaa
      361 tcgggagatt caggaaatac gcgatttctc tatgggtctg gttatgctgg atatttagcc
      421 ttaagaccag cttctctctc ggcttcaggg cttcaatcaa cttatccaca gctaaagcca
      481 tgtcctcttt ggctaattcc cgggaaaggc tggttcctga aggcaggata ttcaagatat
      541 cattcaatcc cccctcttca acagcgcaca ccgagcgctg gcggctgaat ttggcctggg
      601 agcggataaa actgatcgcc gcgttctggg aaacaatggc aatccagccg gagatcttgt
      661 cctggtcttt caccagcgcc agcttattct tttcccagat atctaagaaa accccctgga
      721 caatatcctt aatatcctct atcgtatagg agaaattatg ccggctaagc tggatacgcg
      781 cgcacctttc caccaagggg cgaaagcgaa agacaaactc gctccaggcg gatttatttt
      841 tagcaatgca cctattgact aattctttta aggtaagcac caaaggcctg cttaatatcc
      901 ggcagacaat caccgccgaa cttatccaat aaggcgttag cgatttccaa ggcgcacatt
      961 gcctccgcca ccaccccagc cgcctgcacc gcgcaggtgt ccgcgcgctg gatagaggcc
     1021 aagaccgtct ttttagtccg gatatccacg gattttaaag gcttgttcaa tgtggcaata
     1081 ggcttcatat atccgcgcag gacaatgtct tcaccgttag aaatcccgcc ttcaatgcct
     1141 ccggcgttat tggtcttacg gtaataacca ttttctttag agtagtaaat ggcatcgtgc
     1201 acctgggagc cgaatctgcc ggcgcactca cagcccaatc cgaactctac ggcctttatc
     1261 ccggggacag acattactgc ctggcccaaa cgggcattca gccttttgtc cggctggaca
     1321 taactgccca aacccgcaag caggcccttg accttgagtt caaagacccc gcctaagctg
     1381 tcttttttac ttattgcctg atcaatgatt ctttgccttg ccttttcaga agtctcacct
     1441 ccgatagcgg taaccttaga gtttatcata accttaaact ctgccagaaa tatcttgcaa
     1501 accgccccta ctgccaccct ggaggcggtc tcccgggcag aagccctttc taaaaccggg
     1561 cgggcatcag cgaaaccata tttcaaaagc ccggccaggt ccgcgtgtcc tggccgggga
     1621 ttaaaaatcg cctcttggcg ttctatgcta aaatcccgat tctcaatcag catccccaga
     1681 ggactgccga tagtccgccc cttatacagg ccggaaagta tctccaccct gtctttttca
     1741 atccgcatcc tggccccccg gccatagcct tcctgccggc gggaaagctc cgcgtcaatc
     1801 ttttccttct ccaccctcaa accagccggc agaccctcca atatcgccat caaggccctg
     1861 ccgtgcgact cccccgcggt caaatatcta agcatatttt ctccttgccc agtaagggca
     1921 cacccgcgca ataccaattg gcgcggggtg tcacgccata cgatcatatg tattcctcta
     1981 tgccttccaa gaggtctttg ttatctaagg gtttgaccag cacccggccc aagcccttgg
     2041 cttgcgtata taactcactg tcggcgtaac cggtgataaa gattaccggg atatccgctt
     2101 tgttcctaga cttgataatc tcctttatct tctttacggt ctggaccccg tccatccccg
     2161 gcatcctcaa gtctatgact atcaggtcaa tatgggtatc ctgcaccttt tctatcgcgt
     2221 caaagccatc tccggaggca tcagcagaat agccagattt cttaagcagg ccgcagaggc
     2281 tcctggtaac catcccgtcg tcatcaacca ctaagatatt cttagccatt ttccctcgct
     2341 tcctgcctgc cctcggcttc gccgcgaggc gagccggcag gcagggaact acgcaataaa
     2401 aattacccgt tgttctgcgc gcggtttcac gttggtccgc gattactatt taaataatcc
     2461 tgaagcacct gcttatgatc aaaagccaga tccaacttaa gcgcctcttg cggcttaaag
     2521 accttaagat tcgccgcgtc tgaatcagcc ttaggggtac cttttccttt agcggtaaaa
     2581 actgtggtta ccgtatgaaa acggggatcg cgcccgggtt tagaataagt atgtaattgt
     2641 tttaaatcat aaatatccag agatgtttct tccttagcct ctcttatcgc gcagtcctcc
     2701 aggctctcgt tataatccag gaatcctccg gggatagccc agccgtaagg gggattggaa
     2761 cgctcaatca aaacaatacc cgcggagagt tcaattatta tatccacggt gataaacggc
     2821 ccttgttgaa ttttatgaat gatgtattcc agataactta gcacactttt attaaaggta
     2881 tcataggcag acttatcaaa aaggacaaag gttatttctt ttaaataact gttcggacaa
     2941 tcaaac
//
LOCUS       DATDUB010000167         4159 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1465417, whole genome shotgun sequence.
ACCESSION   DATDUB010000167 DATDUB010000000
VERSION     DATDUB010000167.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 4159)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4159)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4159
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1465417"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1303
                     /locus_tag="VJA84_03360"
     CDS             <1..1303
                     /locus_tag="VJA84_03360"
                     /inference="COORDINATES: protein motif:HMM:NF014879.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phosphoglucomutase/phosphomannomutase family
                     protein"
                     /protein_id="HLD41196.1"
                     /translation="LKIVSQAVADYAGPGKSIAVGYDTRFMSRDFARSAARVLAANGI
                     EVTLSDTAIPTPALSFAVKNNKLDLGVMITASHNPAEYNGFKIKTATGGAAGAEITQE
                     VEKLLRKSEVKCLPDSRELKSVDLTRDYVKFIRSFIDLKKIRNKRFKVLVDAMHGSGD
                     SFIARILKGTDIRIEFIRNTINPSFLGVRPEPLEENLEGLIARVKKERFDLGIALDGD
                     ADRIAAVCGAGVFIHPQKILGLLALHLNQDRGWSGGIVKTTAGSTMMDKIAKSLGIRL
                     YETPVGFKYISNLMEKEDILCGGEEAGGMGVKGYIPERDGTVAGLLLLEMMAYRNKPM
                     IDILQDMERQFGRYYYLRDDLRLEHRVEPKRENLPDELAGKKVVEVRDYDGIKLICED
                     ESWLMFRASGTEALTRLYSEAKTLKRSRELLSLGARIIHKL"
     gene            1304..1888
                     /locus_tag="VJA84_03365"
     CDS             1304..1888
                     /locus_tag="VJA84_03365"
                     /inference="COORDINATES: protein motif:HMM:NF013702.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HLD41197.1"
                     /translation="MFLHWLARFFCFLFCKLFFHFEVKGRGNVPQKGGFVLVSNHSSF
                     LDPVLLSSACPRVLNYLARDSLFKNPLFGWWLLDVGVFPVKRWSADLSAIRKSVLRLR
                     NGRGLAVFPEGTRSPDGGIKDFSQGFALLADKAGVPIVPARITGSYRAWGKGSLMVRP
                     VKIRVIFGERVYLDKKQPYLETARQVSEKIKMMY"
     gene            1953..3497
                     /locus_tag="VJA84_03370"
     CDS             1953..3497
                     /locus_tag="VJA84_03370"
                     /inference="COORDINATES: protein motif:HMM:NF012784.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000028 - ribosomal small subunit assembly
                     [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HLD41198.1"
                     /translation="MVEEKVSLMSELYQNSIKNIKEGEITKGRIVSLGPKEVLIDIGY
                     KSEGTIPTAQFSRDELKTGTEVDVYIESIENDAGMIVLSREKAYKLQGWNKIGNNFRE
                     GDLVEGSIRRKIKGGYLVDVSGIEGFLPLSLSSFRNMSDAEIMNKPFKFKLVKLNQMR
                     HSIIVSRKEAVYKEREENREKLWTALKIGEIMQGVVKGITDFGAFIDLGGVDGLLHIT
                     DMSWSKISHPSEVVAVGDKIEVMILNLDRKEGKVSLGLKQKQPDPWSQVETKYSIGSK
                     VKGKVVNILAYGVFVELEKGIEGLIHISEISWAKRVANLQGIFAVGDVIEVQILSLDR
                     DARRISLSVKQLEANPWLDAESKFTAGSRVQGKVRGFTDYGAFVELDNNLEGMIHVSD
                     MSWTKRVNHPQDVLKKGQKIEVLVLAVDGTNRRISLGLRQTEANPWPEIARKYPIDTI
                     LEAEVVQQSPFGVFAKIDENLEGLIYSSEIDKETAEKLKPSDKIKVKVIKVDVEQGKI
                     GLSARV"
     gene            3503..>4159
                     /gene="tyrS"
                     /locus_tag="VJA84_03375"
     CDS             3503..>4159
                     /gene="tyrS"
                     /locus_tag="VJA84_03375"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018876067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004831 - tyrosine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006437 - tyrosyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HLD41199.1"
                     /translation="MNVPEQLARIRRGCSEIISEAELSKKLEFSLKEKVPLRIKAGFD
                     PTAPDIHLGHSVLLRKLRSFQDLGHTVIFLIGDFTARIGDPSGQNKARPPMSDEDVRR
                     NAATYKSQVFKILDPDRTEVVFNNNWFAVMSTGNIFELLTHSTVSQILSRADFRKRIS
                     ENVDVRASEFLYPLLLAYDSVHLKADVELGGTDQKFNLLLGRELQKDYGQQEQVVITL
                     P"
BASE COUNT         1066 a          888 c         1211 g          994 t
ORIGIN      
        1 cctaaaaatt gtttcccagg cggtggcgga ttacgccggg ccgggtaagt caatcgccgt
       61 aggatatgat acccgtttta tgtcgcgaga tttcgcgcgc tctgcggccc gggtgctcgc
      121 ggctaacggc attgaggtta ccctttcgga tacggccata cccaccccgg ccttgagctt
      181 cgcggtcaag aacaataaat tagacctggg ggtgatgatt accgcctcgc ataacccggc
      241 ggaatataac ggcttcaaga tcaagacggc taccggcggg gccgccggag cggagataac
      301 ccaagaggtg gagaaactct taaggaagtc cgaggttaaa tgcctgcctg attcgcgaga
      361 attaaaaagt gtagacttaa ctcgcgatta cgtaaagttt atccgttcct ttattgacct
      421 taaaaagata aggaacaagc gttttaaggt tttggttgac gcgatgcacg gctccggaga
      481 cagctttatc gcccggatac ttaaaggcac ggatatccgt attgagttta tccgtaatac
      541 cataaatcct tctttcttgg gcgtgcggcc tgaacctttg gaggaaaacc tggaagggct
      601 tattgcccgg gtgaagaaag agagatttga tttaggcatt gccttagacg gcgacgccga
      661 ccggattgcc gcggtctgcg gagccggggt ctttatccat ccccaaaaaa tattggggct
      721 cttggccctg cacctgaatc aggatagagg ctggtccggg gggattgtca agaccactgc
      781 cggctctacg atgatggata agattgccaa gagcctgggg atccggcttt atgagacccc
      841 ggtggggttc aagtatatct caaacctgat ggaaaaagag gacatcctct gcgggggcga
      901 ggaggccggg gggatggggg ttaaagggta tatcccggag cgcgacggaa cggttgccgg
      961 attactgctt ttagagatga tggcttaccg gaataagccg atgattgata tccttcagga
     1021 tatggagagg cagttcggca ggtattatta cctgcgcgat gacctgcgcc ttgagcatag
     1081 ggtggagccg aaaagagaga atctaccgga tgaattggcc gggaaaaagg tggttgaggt
     1141 cagggattac gacgggataa agcttatctg cgaggatgaa agctggctga tgttccgggc
     1201 ttcaggcacc gaggccctga cgcgcctcta cagcgaggcc aagaccctaa agcgctcaag
     1261 agaactgctt agcttaggcg cgagaatcat ccataaatta taaatgttcc ttcattggct
     1321 tgccaggttt ttctgttttc tgttttgtaa actctttttt cattttgagg ttaaaggcag
     1381 gggcaatgtc ccgcagaagg ggggctttgt cctggtctcc aatcactcca gtttcctgga
     1441 tcccgtatta ttaagcagcg cttgtcccag ggtcctcaac tacctggccc gggacagctt
     1501 atttaaaaat ccgctgttcg gctggtggct tcttgatgtc ggggtttttc ctgtcaagcg
     1561 ctggtccgcg gacttatcgg caataaggaa gtcggtgctc cggttgagga acgggcgcgg
     1621 cttagcggtc tttcctgaag gcaccagaag cccggacgga gggattaaag atttctcaca
     1681 gggtttcgcg cttttagcgg ataaggccgg ggtgccgatt gtcccggcca ggattaccgg
     1741 ctcgtatagg gcctggggca aaggcagttt gatggtccgg ccggtcaaga tccgggtcat
     1801 tttcggcgag cgcgtgtatt tagacaagaa acagccctat cttgaaaccg cccggcaggt
     1861 ctccgagaaa ataaaaatga tgtattgaca agagcgcgga tttatcggat aattaagcgt
     1921 tgcaaaaaat taaaaaggag agtggcattt aaatggtaga agaaaaagtc agtttgatga
     1981 gtgagcttta ccaaaacagc atcaagaata ttaaggaagg agaaatcact aagggcagga
     2041 ttgtgtcttt agggcctaaa gaggtgttaa ttgatatagg ctataagtcg gaagggacaa
     2101 ttcccacggc ccagttttcc cgcgatgagc ttaagacggg cacagaagtg gatgtctaca
     2161 tagagtctat agagaacgat gccgggatga ttgtcttgtc cagagaaaag gcctacaagc
     2221 tccagggctg gaataagata ggtaacaatt tccgcgaagg cgacctggtg gagggttcaa
     2281 taaggagaaa gatcaagggc ggatacctgg tggatgtctc gggcatagag gggtttcttc
     2341 ctctttcttt gtccagtttc aggaatatgt ctgacgccga gataatgaat aagcctttca
     2401 agttcaagtt agtcaagctt aaccagatgc gccacagcat tattgtttcc cgtaaagagg
     2461 cggtgtataa ggaaagggaa gagaaccggg aaaaactctg gacggcgcta aaaatcggcg
     2521 agataatgca gggggtggta aaggggatta ccgattttgg ggcctttata gatttaggag
     2581 gggtggacgg tctattgcac attaccgata tgagctggtc caagatctct catccttcag
     2641 aggtggtggc agtgggggac aagatagagg tgatgatttt aaaccttgac cgcaaggaag
     2701 gcaaggtttc tttgggactg aagcagaaac agcccgatcc ctggagccag gtggagacaa
     2761 aatacagtat cggttctaag gtgaaaggca aggtagtcaa tatcctggct tatggtgtgt
     2821 ttgtggagct ggaaaaaggc atagaaggat tgatccatat ctcggaaatt tcctgggcca
     2881 agcgggtggc taacctgcag gggatatttg ccgtcggcga tgtgattgag gtccagatct
     2941 taagcctgga ccgggatgcc cgcaggattt ccttaagcgt aaaacagtta gaggccaatc
     3001 cctggttgga tgccgagagc aagtttaccg ccggttcccg ggtgcagggc aaggtgcggg
     3061 gttttaccga ctacggggcc tttgtggaat tggataataa cctggaaggt atgatccatg
     3121 tctcggatat gtcctggacc aagagggtca accatcccca ggatgtctta aagaagggcc
     3181 agaagattga ggtcctggtc ctggctgtgg atgggaccaa ccgcaggatt tccttagggt
     3241 taaggcagac cgaggccaat ccctggccgg aaattgccag gaaataccct attgatacta
     3301 tccttgaagc cgaggtagtc cagcagtctc ctttcggggt ttttgccaag atagatgaga
     3361 acctggaggg gcttatttac tccagtgaga tagataaaga aaccgcggaa aagttaaagc
     3421 cctcggataa gatcaaggtc aaggttataa aggttgatgt agagcaggga aagatcggcc
     3481 tttcagccag ggtttaacca ggatgaatgt cccggagcaa ttagccagga ttcgccgcgg
     3541 ctgttccgaa ataatcagcg aggcagagct tagcaagaaa ttagagttca gccttaaaga
     3601 gaaggtccct ttaagaataa aagcgggttt tgaccctact gccccggata tccatctggg
     3661 gcatagtgtt ttattaagga aactgcgctc ttttcaggat ttaggccaca ctgtcatatt
     3721 ccttatcggg gattttaccg cccgcatagg ggacccttcc ggccagaaca aggcccgccc
     3781 cccgatgtct gatgaggatg tccggcgtaa tgccgcgact tataaatccc aggtttttaa
     3841 aatattggat ccggaccgga ctgaggtagt gttcaataat aattggtttg ccgtgatgtc
     3901 tacaggcaat atctttgaac tgcttacaca ttccacggtt tcacaaatat tgtcccgggc
     3961 ggatttccgc aaacggataa gcgagaatgt ggatgtccgg gccagtgaat ttctctatcc
     4021 gctcctgctg gcctatgact ccgtgcattt aaaagcggat gtggagttgg gggggacaga
     4081 ccaaaaattc aatctgctcc tgggccggga gttgcaaaaa gactacggcc agcaggagca
     4141 ggtggttatc accttgcct
//
LOCUS       DATDUB010000168         2245 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1636155, whole genome shotgun sequence.
ACCESSION   DATDUB010000168 DATDUB010000000
VERSION     DATDUB010000168.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2245)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2245)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2245
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1636155"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            17..1546
                     /gene="atpA"
                     /locus_tag="VJA84_03380"
     CDS             17..1546
                     /gene="atpA"
                     /locus_tag="VJA84_03380"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006567601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000275 - mitochondrial
                     proton-transporting ATP synthase complex, catalytic sector
                     F(1) [Evidence IEA];
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HLD41200.1"
                     /translation="MEIRPEEITSVIQKELEKYRLRLKTESVGNVIQVGDGIARVYGL
                     DEAMMGELIEFPNNVMGMVLNLEEESVGAVIFGPDNPDRNIKEGDVVKRTGRIVEIPV
                     GQAVVGRVINPLGNPIDGKGPLATTKSRPLEAIAVGVIQRQPVKQPLETGIKAIDSMI
                     PIGRGQRELIIGDRQTGKTAIAIDTIINQKGKGVHCIYTAIGQKVSSIVAVAQTLEKY
                     GAMEYTTIVSASSRSSASTQYLAPYAACAIGEEFMYNGKDVLVIYDDLSKHAQAYRQL
                     SLLLRRPPGREAYPGDVFYLHSRLLERAVKLSDELGAGSLTALPIIETQAGDITSYIP
                     TNVISITDGQIYLEGDLFYSGVRPAVNVGLSVSRVGGKAQTKAMRQVASQLRLDLAQY
                     RELVTFAQFGSEIDKSAQMQLARGERMVQVLKQGQYATLSLARQIMIIYAGTKGYLDD
                     LPVDSIRRFEEELGKFIERRYPNIEYEINEKQELSDSLQQKLDKAIEELKSEFVFKPQ
                     K"
     gene            1543..>2245
                     /locus_tag="VJA84_03385"
     CDS             1543..>2245
                     /locus_tag="VJA84_03385"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: protein motif:HMM:NF012456.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HLD41201.1"
                     /translation="MSESLKHIKNRIRSIESIKKITRAMEMVSLAKLRPAQNKLESGR
                     RYLEKIRRLLSYTLAKASCADNPFVAAAQFAGRPQGAAPTGKKVGLCVISSDTGLCGT
                     YNNNLFRKAEEFIKGNPSVVAAQCAVRLAVIGRKGFNYFRRKGYELTLVYHEPRGNYT
                     GVMLEKILSDLKHMFLSEGISRVCLAYTRFESSSRQKPVIEEFLPLSVVDAQCASTTE
                     EYLIEPDARTVLDELA"
BASE COUNT          569 a          542 c          627 g          507 t
ORIGIN      
        1 ttaaggttaa ctaaaaatgg aaatcagacc ggaagaaatc acttcagtaa tccaaaagga
       61 attagagaaa taccgcttgc gcctcaagac cgagtctgtc ggcaatgtga ttcaggtcgg
      121 agacggcatt gcccgcgtct acgggctgga cgaggcgatg atgggggagt tgatagagtt
      181 tcccaacaat gtgatgggga tggttttaaa cctggaagag gagagcgtgg gcgcggtcat
      241 cttcggcccg gataatcctg accgcaatat caaagaaggg gatgtggtca aacgcaccgg
      301 caggatcgtg gaaattccgg ttggtcaggc agtggtgggc cgggtcatca atcccttagg
      361 caatcctatt gacgggaaag gccctttagc caccaccaag agccggccgc ttgaggctat
      421 tgccgtgggg gtaatccagc gccagccggt aaaacagcct ttagaaaccg ggatcaaggc
      481 cattgattca atgatcccta tcggcagggg ccagagagag ctgattatcg gcgaccgcca
      541 gaccggaaag accgccatag ccatagacac cattattaac cagaaaggca aaggggtgca
      601 ctgcatttat accgctatcg gccagaaggt ttccagtatc gtggccgtgg cccagaccct
      661 ggaaaaatac ggggcaatgg aatataccac cattgtcagc gcctccagcc gttcctccgc
      721 ctctacccaa tatttggccc cttatgccgc ctgcgccatc ggcgaagagt ttatgtataa
      781 tggcaaggat gtcctggtaa tctatgatga cctttctaag cacgcccagg cctaccgtca
      841 gctttccctt ttgttgcgcc ggccgccggg aagagaggcc tatcccggag atgtctttta
      901 cctgcattcc cggttattgg aaagggcggt aaaactaagc gatgagttag gcgcaggttc
      961 tttaaccgcc ttgcctataa ttgagaccca ggccggggac atcaccagct atatcccgac
     1021 caatgtcatt tctattaccg acggtcagat ttacctggaa ggcgacctgt tttattccgg
     1081 ggtcaggccc gcagttaatg tcgggctgtc cgtatcccgc gtgggaggca aggcccagac
     1141 caaggctatg cgccaggtgg cctctcaact tcggctggac ctggcccaat accgggagtt
     1201 ggttaccttt gcccagtttg gctctgaaat tgataagtcc gcccagatgc agttagccag
     1261 aggagaaagg atggtccagg tgttgaagca gggccagtat gccactcttt ctttagcccg
     1321 gcagataatg attatttatg ccgggaccaa aggttatctg gatgacctgc ccgtggactc
     1381 aatcaggcgt tttgaagagg aactcgggaa attcattgaa cgcagatatc cgaatataga
     1441 gtatgagata aacgagaaac aggagttaag cgacagcctt cagcagaaat tggataaggc
     1501 gatagaagaa ttaaaaagcg agtttgtctt taaaccccag aaatgagcga gtctttaaag
     1561 catattaaga accgcatccg cagtattgag agcatcaaga agatcacccg ggcgatggag
     1621 atggtctcct tggccaaact gcgcccggcc cagaacaagc tggagtcagg ccgcaggtat
     1681 ctggagaaaa taagacggct tttatcctat accctggcca aggcctcttg cgcggataat
     1741 cctttcgtag cggccgcgca atttgcaggg cggccacagg gggccgcccc tacaggaaag
     1801 aaggttggct tatgtgtcat ctcttcggat accggactgt gcgggaccta taataataac
     1861 ctttttcgca aggccgagga gtttatcaag ggaaatccat ccgtagtggc cgcgcagtgt
     1921 gcggtcagac tggcggtgat cggcaggaaa gggtttaatt atttccggcg aaagggatat
     1981 gaacttactt tggtttatca tgagccgcgg ggtaattata ccggggttat gctggaaaag
     2041 atcctttcag acctaaagca tatgttttta tccgagggga taagccgggt atgcctggcc
     2101 tatacccgct ttgaaagctc atcccggcaa aagccggtga ttgaggagtt tttgccttta
     2161 tctgtagtgg acgcacagtg tgcctccact accgaagaat acctgattga gccggatgcc
     2221 cggactgtat tggatgagct tgccc
//
LOCUS       DATDUB010000169         2967 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_2144768, whole genome shotgun sequence.
ACCESSION   DATDUB010000169 DATDUB010000000
VERSION     DATDUB010000169.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2967)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2967)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2967
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2144768"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(69..854)
                     /locus_tag="VJA84_03390"
     CDS             complement(69..854)
                     /locus_tag="VJA84_03390"
                     /EC_number="6.3.4.15"
                     /inference="COORDINATES: protein motif:HMM:TIGR00121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004077 - biotin-[acetyl-CoA-carboxylase]
                     ligase activity [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biotin--[acetyl-CoA-carboxylase] ligase"
                     /protein_id="HLD41202.1"
                     /translation="MDEGIVRIFHTKEIDRPHTHIISRKVYKYDTIGSTNDAAFMYGV
                     KGEREGSVFWARSQTKGRGRLGRRWVSHKDKGLYFSLLLRPEAEVKDAAKITLLIGLA
                     VVKALRGFSGLGFLIKWPNDIVIDDKKIGGILTEMDAEVNKVKFIVAGIGINTNLRKS
                     ELPIKEAVSLRILLQKEVPQEAVFNICLKEIDGYYFRFKNGGFPDIIDEARHFSSLWG
                     KQVKINGKEEGTAVDFDNEGALVVRQNNGFRKTIFAGRVELLR"
     gene            complement(928..2889)
                     /gene="uvrB"
                     /locus_tag="VJA84_03395"
     CDS             complement(928..2889)
                     /gene="uvrB"
                     /locus_tag="VJA84_03395"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020258113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009380 - excinuclease repair complex
                     [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrB"
                     /protein_id="HLD41203.1"
                     /translation="MEKFKLASSFKPAGDQPRAIAALIQGLNKGERFQTLLGVTGSGK
                     TFTLANVIAAVNKPTLVISHNKTLAAQLYGEFKEFFPQNAVEYFVSYYDYYQPEAYIP
                     STDTYIEKDSSINDRLDRLRLSSTTSLMIRKDCLVVASVSCIYNLGSPEDYKDALVFL
                     EKGQSVSRDDILRKLIDIQYERNDYEFIRGRVRARGEVVDIYPAYAQSALRLELFGDE
                     IERISEFDPVSGKKTADLERCAVYPAKHFIVGGEFLEKALISIEEELRERLKVLASQN
                     KVLEAQRLESRTKYDLEMLKEIGYCHGIENYSRHLSGRPTGSRPYCLIDYFPKDFLLI
                     IDESHVTVPQVRGMYEGDKARKETLVDFGFRLPSCLDNRPLRFEEFEGLISQVVLVSA
                     TPGEYEMKKSKGRVIEQVIRPTGLVDPEIIIRPIDGQIEDLIKEVKERIKKNERVLVT
                     ALTKRMSEDLSAYLKDEGLNVKYLHSEIETIERTRILKELRQKKFDCLVGVNLLREGL
                     DLPEVSLVAILDADKEGFLRSATSLIQTSGRAARNINGKVIMYADTVTGSMKKAISES
                     LRRRKIQLEYNTRHKITPRGIQKAIKEGIEALQEAEELTQDLSGLPKEEYELKAYISE
                     LEYEMELASRNLQFEEAARIRDKIRELKG"
BASE COUNT          699 a          842 c          621 g          805 t
ORIGIN      
        1 aagcagcaac ttatcgccct taaacaaccc tatggttatg ttggtattgc ctatatcaac
       61 agctaaaatc atcttaacag ctccactctc ccggcaaaga ttgttttacg gaaaccatta
      121 ttctgacgca ccaccaacgc cccctcatta tcaaaatcca cggctgtgcc ttcctctttc
      181 ccgttaatct tgacctgttt cccccacagg ctggagaaat gcctggcttc atctattata
      241 tcaggaaagc ctccgttttt aaaccggaaa taatatccgt ctatctcctt caggcagata
      301 ttaaagacgg cctcctgggg gacctctttc tggagcagta tccttaagga cactgcctct
      361 tttatgggca gttcactttt tcttaagttg gtatttatcc ctattcccgc gacaataaat
      421 tttaccttat taacctcggc atccatctca gtcaatatcc cgccgatctt tttgtcgtct
      481 atgactatgt cattgggcca tttgattaaa aaacccaggc cggaaaaccc gcgcagagcc
      541 ttaactaccg ccaggccgat taagagagtg attttggccg catccttaac ctccgcctcc
      601 gggcgcagga gcagggaaaa gtaaagccct ttatccttat gcgaaaccca gcgccggccc
      661 aacctccccc ggcctttagt ctggctccgg gcccaaaaga cactgccttc cctttcccct
      721 ttcaccccat acataaaagc cgcgtcattg gttgagccga tggtgtcgta tttatagacc
      781 ttcctgctaa tgatatgggt atgcgggcga tctatttctt tggtatgaaa aattcttaca
      841 ataccttcat ccatattaat ttcgtagggg cggccccctg tggccgccca tcgcctattg
      901 tttccggaca ggcacagggg cctgtcccta cccctttaat tcccttatct tatcccttat
      961 ccgcgcggcc tcttcaaact ggaggttgcg gctggccagc tccatctcgt attctaattc
     1021 cgaaatatag gcctttaact cgtattcttc cttgggcagg ccggataaat cctgggtcaa
     1081 ttcctcggcc tcctggagag cctcaatccc ttccttaatc gccttttgga taccgcgcgg
     1141 ggttatcttg tgtctggtgt tatattctaa ctggatcttc ctgcgccgga ggctttccga
     1201 aatcgccttc ttcatagagc ctgtaaccgt atccgcgtac attattacct tgccgttaat
     1261 gttgcgcgcg gcccttccgg aggtctgaat taaagatgta gccgaacgca agaaaccttc
     1321 cttatccgcg tccaatatgg ctaccaggga tacctccgga aggtccaggc cttcccgcaa
     1381 gaggtttacc cccactaagc agtcaaactt cttctgcctt aactccttga gtatccgggt
     1441 gcgctctata gtctcaatct cggagtgcag gtatttgaca ttcaggcctt catccttcaa
     1501 ataggcgctt aagtcttcag acatccgctt ggttaaggca gttaccaata cccgctcgtt
     1561 tttctttatc cgctctttta cctctttaat caaatcctca atctgtccgt caattggcct
     1621 gataataatc tcggggtcaa ctaatcctgt gggccggata acctgttcaa tcacccggcc
     1681 tttggatttc ttcatctcat attcgccggg agtggccgaa accaaaacca cctgactgat
     1741 caatccttca aactcctcaa acctcaaagg ccggttatcc agacaggaag gcaggcgaaa
     1801 gccaaaatct accagggtct ctttcctagc cttatccccc tcatacatcc cgcggacctg
     1861 ggggacagtc acatggcttt cgtcaattat caaaagaaaa tccttgggga aataatcaat
     1921 caggcaataa ggccgggacc ctgtcggcct gcctgataaa tgccgggaat aattttcaat
     1981 cccgtggcaa tagccgattt ccttaagcat ctcaaggtca tatttagtcc gactctctaa
     2041 gcgctgggcc tctaaaacct tgttctggga agctaaaacc ttaagccgct ctctcaactc
     2101 ttcctctatt gagataagcg ccttttccag gaactctccg cccacgataa aatgcttggc
     2161 cggatacacc gcgcaccttt ccaaatcagc ggtctttttc ccgcttaccg ggtcaaattc
     2221 gcttatcctt tctatctcat caccaaagag ctccaggcgc agggcgcttt gggcataggc
     2281 cggatagata tccactacct caccgcgcgc ccggaccctc ccccggataa attcataatc
     2341 attacgctca tactggatgt caataagctt gcgcaaaatg tcatcccgtg aaacgctctg
     2401 gcctttctcc aggaaaacca gggcatcttt ataatcttct ggcgaaccca ggttataaat
     2461 gcaggagacc gaggccacca ccaaacagtc cttgcggatc attaaggaag tagtgctgga
     2521 aaggcgcagg cggtccagcc ggtcgtttat ggaagagtct ttctcaatat aggtatcagt
     2581 ggagggaata taggcctcag gctggtaata gtcatagtag ctgacaaaat attccaccgc
     2641 gttttggggg aagaattctt tgaattcgcc gtaaagctgg gcggccaagg tcttattatg
     2701 ggaaataacc agggtgggtt tgtttaccgc ggcaatcaca ttggccaggg taaaggtctt
     2761 tccgcttccg gtaaccccaa gaagggtctg aaacctttcg cctttattta gaccttgaat
     2821 aagggccgcg attgcccgcg gctggtcccc tgcaggctta aaagaactgg ctaatttaaa
     2881 cttctccacg gcttaatttg aatcacttca catttgtcgg aaagcaagcc ggcgccgcat
     2941 tcgctactcg gcttgtcgcc tcgccac
//
LOCUS       DATDUB010000170         3804 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1639949, whole genome shotgun sequence.
ACCESSION   DATDUB010000170 DATDUB010000000
VERSION     DATDUB010000170.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3804)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3804)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3804
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1639949"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..209)
                     /locus_tag="VJA84_03400"
     CDS             complement(<1..209)
                     /locus_tag="VJA84_03400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013788448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HLD41204.1"
                     /translation="MELESRYNSKEVEDRIYAFWQEQGLFAAKVNSDKKPFCIVIPPP
                     NVTGILHMGHALNNAYQDILVRLKR"
     gene            complement(209..1771)
                     /gene="cimA"
                     /locus_tag="VJA84_03405"
     CDS             complement(209..1771)
                     /gene="cimA"
                     /locus_tag="VJA84_03405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007221976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043714 - (R)-citramalate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009097 - isoleucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="citramalate synthase"
                     /protein_id="HLD41205.1"
                     /translation="MLKVELYDTTLRDGAQTEGISYSVQDKLRIARKLDELGVHFVEA
                     GWPANPKDREVFKILKSQPLKQAAVTAFGSTRRADKLANSDPSLKSILEAGTRVVTIF
                     GKTWDLHVKDVLKISLDDNLKIIEDTVGYLVSKGRTVIYDCEHFFDGHKSNPGYCLKT
                     VLAAQGAGASRIVFCDTNGGTVTSELLRIIRQVAPKLKGTLGIHTHNDLGLAVANSIL
                     AVENGVSHIQGTFNGYGERCGNADLSAIIGILKTKMGIDCIPDKNLKELTKTAHFISE
                     VSNMRQQPNQPFVGSSAFTHKGGVHIDAMLKNPKTYEHLNPEAVGNHRRLLVSELAGK
                     MPIVLKAKEFDLDMDKKSPQTKKILKLLQDLEHQGYQFEAADASFEILIKRALKQYKR
                     FFDLEGFRVVIEKKADGRVSSEAIIKVKVKGIEEHTAADGDGPVNALDNALRKALKSF
                     YPTLSRMHLSDFKVRVLDEKAGTAARVRVLIQSQDENESWGTVGVSGNIIEASWQALV
                     DSVEYKLLKDKN"
     gene            complement(1776..2996)
                     /locus_tag="VJA84_03410"
     CDS             complement(1776..2996)
                     /locus_tag="VJA84_03410"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020257985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004072 - aspartate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HLD41206.1"
                     /translation="MGRLIVQKYGGSSVANPERIKNVAKRVAGYRKKGDDLVVVVSAL
                     GDTTDELIELAAKITDNPPEREMDMLLSTGEQISVALLAMAIQQLGYEAISLTGPQVG
                     IITDTAHTKARIVKIEQEKIRRELKKGNIVIVAGFQGMTPENDITTLGRGGSDLTAVA
                     LAKTLSADECEIYTDVEGVFTADPRIEPKARKIEAITYDEMLEMASLGAQVMQSRSIE
                     VAKKFDVPIQVRSSFSDKPGTMIIKEVKNMEDAAVTGITLNKNEAKITICNVPDKPGI
                     AAKIFKQLAEGGINVDMIVQNVSHTRSTDISFTVPKTDCAKAIKMTHKAAGELGKLEV
                     LEDSDISRVSIVGVGMKTHSGVAAKMFETLAKEKINIEMISTSEISISCIIKKRFGET
                     AVCALHEKFGLDKR"
     gene            complement(3008..>3804)
                     /locus_tag="VJA84_03415"
     CDS             complement(3008..>3804)
                     /locus_tag="VJA84_03415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020257987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phosphoglycerate mutase"
                     /protein_id="HLD41207.1"
                     /translation="RHLAVIKNKGLKARCVPPHDITGREFKKYLPKGEDDQYLISLMR
                     EARGLLLTHEINQVRLDLKENPANAIWLWGQGKRPNLPGFKDKYGLSGSVISAVDLIK
                     GIGRVAGLEVINVEGATGYYDTNYKGKAEAAIASLKKKDLVYVHVEAPDEASHNGDLQ
                     QKILAIERFDQFVVGGILEAFSREAGSRYAGEGRQDFRILLMPDHATPLSLRTHSADM
                     VCFAMYGKGISASGSEGFNESEAKKSGIALENASVLMDRLVKEEEI"
BASE COUNT          878 a         1106 c          848 g          972 t
ORIGIN      
        1 atccgcttga gccggactaa aatatcctga taggcattat taagcgcatg ccccatatgc
       61 aggataccgg tgacattcgg cggcgggata acaatgcaaa aaggcttttt atccgaattg
      121 accttggcgg caaacaaacc ctgttcctgc caaaaggcgt atatccggtc ttccacttct
      181 ttagaattat aacggctctc taattccatt aattcttatc cttcaataat ttatattcca
      241 cgctatccac aagcgcttgc caggaggctt caataatatt tcctgaaacc cccaccgtgc
      301 cccaggattc gttctcatcc tgggactgga tcaagacccg caccctggcg gcggtgccgg
      361 ccttttcatc caggacccgc accttgaaat ccgacaaatg catccggctc aaggtgggat
      421 aaaaagactt gagggccttg cgcagggcat tatccaaagc gttcaccggg ccgtcgccat
      481 cggcggcagt atgttcctct atccccttga ccttaacctt aataatggcc tcggaactga
      541 ccctgccgtc ggccttcttt tcaatgacca ccctgaaacc ctccaaatca aagaatcttt
      601 tatactgctt gagggcgcgt ttaatcagga tttcaaaaga ggcatccgcg gcctcaaact
      661 gatagccctg gtgctccagg tcctgcaaaa gctttaatat cttcttggtc tggggagatt
      721 tcttatccat gtccaggtca aactccttgg ccttaaggac tatgggcatc ttcccggcca
      781 gctccgagac caaaagcctg cggtgattgc ctaccgcttc cggattcagg tgctcataag
      841 ttttagggtt cttaagcatg gcgtcaatat gcaccccgcc cttatgcgta aaggccgaac
      901 tgcccacaaa aggctgattg ggctgttggc gcatattgga gacctcgctg ataaaatgcg
      961 cggtcttggt cagttcttta aggtttttat ccgggataca gtcaatcccc atcttggtct
     1021 tcagtatccc gataatagcg gacaggtccg cgttgccgca tctttcgccg tagccgttaa
     1081 aagtcccctg gatatggctg accccgtttt caaccgccag gatggaattt gccacggcta
     1141 accctaagtc gttatgggta tgtatgccta aggtcccctt cagtttaggg gcaacctgac
     1201 ggataatcct caacaattcc gaggtaaccg tgccgccgtt agtgtcgcaa aaaactattc
     1261 tggaggcccc ggcgccctgc gcggccaata ccgtctttag gcaatagccg ggattactct
     1321 tatgaccgtc aaagaaatgc tcgcaatcat agataactgt ccggccttta gaaaccagat
     1381 agccgacagt atcctcaatt atttttaagt tatcatccaa ggatatcttt aaaacatcct
     1441 taacatgcag gtcccaggtc ttgccgaaga tagtaaccac ccgggtgccg gcctcaagga
     1501 tgctcttaag gctgggatcg ctattggcta acttgtccgc ccggcgggtt gagccaaagg
     1561 cggttactgc cgcctgtttc aaaggctggg atttaagaat cttaaagacc tcccggtcct
     1621 tggggttggc cggccagccg gcctcaacaa agtgcacccc taactcatca agtttgcggg
     1681 caatgcgcag tttatcctgg accgaatagg aaatcccctc ggtctgggca ccgtcgcgca
     1741 gagtagtatc gtataactct acctttaaca tctaatcacc tcttgtctaa tccgaatttc
     1801 tcatgcaggg cacagaccgc ggtctcccca aacctcttct tgatgataca ggaaatgctg
     1861 atctcggaag tagagatcat ctcaatgttt atcttctcct tggccaaagt ttcaaacatc
     1921 ttggccgcca ccccggaatg ggtcttcatc cccaccccga ctatagatac ccgggaaata
     1981 tccgaatcct ccaggacctc caatttaccc agctcaccgg cggccttgtg agtcatcttg
     2041 attgccttgg cgcagtcggt tttagggaca gtaaaagaga tatcggttga gcgggtatga
     2101 gaaacattct ggacaatcat atccacattt atcccgcctt cagccaattg cttgaagatc
     2161 ttagccgcga tcccgggctt gtccgggaca ttgcagatcg taatcttggc ctcgttctta
     2221 ttcagggtaa tcccggtaac cgccgcgtct tccatattct tgacctcctt aataatcatt
     2281 gttcccggct tatcggaaaa agaagagcgc acctgtatcg gcacgtcaaa tttcttagcc
     2341 acctctattg aacgggactg catcacctgc gcgcccagag aggccatctc cagcatctca
     2401 tcataggtta tggcctcaat cttcctggcc tttggctcaa tccgggggtc agcggtaaag
     2461 accccttcca catcggtata aatctcgcat tcatccgcgg acaaggtctt ggccagggcc
     2521 acggcagtca ggtccgagcc gccccggccc agggtagtaa tatcgttttc cggggtcatc
     2581 ccctggaaac cggcaacaat cacgatattg ccttttttta actcccggcg tattttttcc
     2641 tgctctatct tgacaatcct ggccttggtg tgagcggtat cggtaatgat ccccacctgg
     2701 ggaccggtca gggatatggc ctcatatcct aactgctgga tagccattgc caaaagggcc
     2761 accgagatct gctctccggt tgaaagtagc atatccattt cccgttccgg ggggttatcg
     2821 gtaatctttg ccgccagctc aatcaattca tcggtagtgt cccctaatgc tgaaaccacc
     2881 accaccaaat catcgccttt tttccggtaa ccggccaccc gcttagccac attcttgatc
     2941 ctctccggat tggctactga cgagccgccg tatttctgca caatcaatct ccccacgcga
     3001 ttacctccta tatctcttct tctttgacta acctgtccat cagcacagag gcgttttcca
     3061 gggcgatgcc gcttttttta gcctctgatt cattaaaccc ttcagacccc gaggccgaaa
     3121 ttcccttgcc atacatcgcg aaacagacca tatccgcgga atgggtgcgc aaagacaaag
     3181 gggtggcatg gtcaggcatc agcaggatac gaaagtcctg ccttccttct cccgcgtagc
     3241 gggatcccgc ttcgcgggaa aaagcctcta aaatcccacc caccacaaac tggtcaaacc
     3301 tttcaatagc caaaatcttc tgctggagat cgccgttatg tgaggcctca tccggggcct
     3361 ccacatgcac atagaccaaa tcctttttct tcaaggaggc aattgccgcc tctgccttgc
     3421 ccttgtaatt ggtgtcataa tatccggttg ccccttccac attgatgacc tctaaacctg
     3481 ctacccggcc gatgccttta atcaagtcca ccgcggaaat caccgagccg cttaagccgt
     3541 atttatcctt aaagccgggc agattaggcc tcttcccctg gccccagagc cagatggcgt
     3601 tagccgggtt ttcctttaaa tccaggcgca cctgatttat ctcatgggta agcaaaagcc
     3661 cgcgcgcctc ccgcatcaag gaaatcaaat attggtcatc ctcgcccttg ggcagatatt
     3721 tcttaaactc cctgccggta atgtcgtggg gcggcacaca acgggccttc aggcctttat
     3781 tcttgattac cgccaaatgc cggt
//
LOCUS       DATDUB010000171         2524 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_783982, whole genome shotgun sequence.
ACCESSION   DATDUB010000171 DATDUB010000000
VERSION     DATDUB010000171.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2524)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2524)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2524
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_783982"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            107..177
                     /locus_tag="VJA84_03420"
     tRNA            107..177
                     /locus_tag="VJA84_03420"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:139..141,aa:Gly,seq:ccc)
     gene            309..1004
                     /locus_tag="VJA84_03425"
     CDS             309..1004
                     /locus_tag="VJA84_03425"
                     /inference="COORDINATES: protein motif:HMM:NF013700.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing M23
                     family metallopeptidase"
                     /protein_id="HLD41208.1"
                     /translation="MSAAKLPAIICYLFILSGCAAIEPAAKLSIPPIAPIRKQTIQLP
                     GKYHRVEKNQTLWRISKIYNLDLEDILKSNNITDPAQIKTGQSIFIPYSSLPEARLSL
                     NSHNSKTKDNPADFIWPAKGTVISKFGDKLNNAVNKGLTIRIKPESDIVAAQSGRVAF
                     TAGQLKGYGKTLILSHNNGIMTVYALLSDILVKSGEFIAQGTPIARSVNGIVHFEIRK
                     GYASQNPYYYLSL"
     gene            1001..>2524
                     /locus_tag="VJA84_03430"
     CDS             1001..>2524
                     /locus_tag="VJA84_03430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41209.1"
                     /translation="MKPYGRQDILEILNKRAAGLEKGYRQNIAILGDELIGKSYLMEY
                     WLSSYHSNYSIPVYLKEISGSFPDFADKFSGKLLFSFLKNSQYQLKEDLKQLLDKAEK
                     HIPQTCAAIREILSQKKNKPHTVFARLLELPEILHKETSKSCIIVIDEFQDMEGLKIK
                     DMYELWSRHIMLSKHTMYVLISSKKHIALNILSASLNLLFGNFEKLEVPAWDNHTCRG
                     FIRERLKPFELPEQVLDFITGISGGRPFYLNVLCASFKDYLNKNPAIKPDFPSLPASC
                     QELFVNEWGILNRRFLSLIERINREAPGALAIKLLVETAKGPTRISKLPQSSGASKKE
                     TACALTKLSALGIINKNSDIYFLQDKVFAFWLKSVYEARINGYGCESRDEVVKKSFEK
                     ELTRLFDEFREAQDRQTNERIFELFNKFSNESVEFHKKRLRLNHFKEVKMLNLNAGQP
                     QKGIIARSANSLWIAAFKEDKVNEEDMRDFVRACKRFKYNKSQKRIFIAFDNIDDNAR
                     "
BASE COUNT          774 a          606 c          551 g          593 t
ORIGIN      
        1 gagtaccgcc gttcgtccca gccgctattg caggatgtct gcacaatgtg cagtgaatat
       61 tgctccataa aacttattga agaatgtata cggagctgat agttttgcgg gtgtaattca
      121 atggcagaat ggcagcttcc caagctgttt atggcggttc gattccgctc acccgcttaa
      181 tacacatatt cgtagagggt gggtttcccg ccgccggatt tagaaatatg gcgggatccc
      241 tccaggacaa ataaacaaca gcgggacaat tcccatcgcc cgctccaaaa ttatagatga
      301 gaaatagatt gtcagccgca aaattaccag ctattatttg ctatctcttt attttatccg
      361 gatgcgcggc tatagagcct gccgccaagc tgtctatccc gcctatcgcg ccaatcagaa
      421 aacaaactat ccagttgccg ggaaaatacc accgcgtaga gaaaaaccaa accttatgga
      481 gaatctctaa aatatacaac ctggacctgg aggatatctt aaaaagcaac aacatcaccg
      541 acccagcgca gataaagacc ggccagtcca tatttatccc ttatagcagt ttaccggaag
      601 ccaggctttc ccttaactct cacaactcta agactaaaga caatcccgcg gattttatct
      661 ggccggctaa aggaacggtt atctccaaat tcggggacaa actgaataat gccgtaaata
      721 agggcctgac tatccggatt aaaccggaat cagatatcgt agccgcccag tccggcaggg
      781 tagcctttac cgcggggcag ttaaaaggat acggcaagac ccttatcctt tcgcataata
      841 acgggataat gaccgtatac gccctgcttt cggatatttt agtcaaatcc ggagaattca
      901 tagcgcaagg aacgccgata gccagaagcg taaacgggat agtccatttt gagatccgca
      961 aaggatatgc ctcgcagaat ccttattatt atttaagcct atgaaaccat acggcaggca
     1021 ggacatcctg gaaatactca ataaaagggc cgcgggcctg gaaaaaggct accgccagaa
     1081 tatcgccatc ctgggagatg agttgattgg aaaaagctat ctcatggaat actggctgtc
     1141 ttcttatcac agtaattaca gcatcccggt ctatcttaaa gagataagcg gctccttccc
     1201 ggatttcgcc gataagttta gcgggaagct gcttttttcc ttccttaaaa acagccaata
     1261 ccagttaaaa gaagacctga aacaactctt agacaaggcg gaaaaacaca ttccccagac
     1321 ctgcgccgca atccgggaga tactctccca gaagaaaaat aaaccccaca cagtctttgc
     1381 caggctgctg gagcttccgg aaatacttca taaagaaacc tctaaaagct gtattatcgt
     1441 catagacgaa ttccaggata tggaagggct aaagataaag gatatgtacg agctctggag
     1501 caggcacatt atgctaagca aacatacaat gtatgtcctg attagctcaa aaaaacatat
     1561 cgcgctgaat atcctaagcg ccagcctcaa tcttttattc gggaatttcg aaaagctgga
     1621 ggtccctgcc tgggacaacc atacctgccg cggttttatc cgggaaaggc ttaaaccctt
     1681 tgaactgccg gagcaggttt tagactttat taccgggatt tccggaggcc ggccgtttta
     1741 tcttaatgtt ttatgcgcca gtttcaaaga ttatctcaat aaaaatcccg cgataaaacc
     1801 ggatttccca tctttgcctg cctcctgcca agaactgttt gttaacgaat ggggtatcct
     1861 caaccggaga ttcctctctc taatagaaag aataaaccgt gaggcccccg gggcactggc
     1921 aattaaatta ctggttgaaa cggctaaagg gccaacccgg atttccaagc tacctcaatc
     1981 aagcggcgca tctaagaaag agacggcctg cgccttgact aaattatccg ccctgggaat
     2041 aatcaacaaa aattccgaca tttacttcct tcaagataag gtatttgcct tttggctcaa
     2101 atccgtatat gaagcaagga ttaacggata cggctgcgag agccgggatg aggtagttaa
     2161 aaaatcattt gagaaagaac tgacccgcct ttttgatgaa ttccgcgagg cccaagaccg
     2221 gcagacaaat gaaaggattt ttgaattatt caataaattt tccaatgaat ccgtggagtt
     2281 ccataaaaaa cgcctgcgcc tcaatcattt taaggaagta aagatgctta acctaaacgc
     2341 cgggcagccc cagaaaggga taatcgccag gagcgccaac agcctctgga tagccgcgtt
     2401 caaggaagac aaggtaaacg aagaagatat gcgggacttc gtacgcgcct gcaagaggtt
     2461 caaatacaat aaatcccaga aaaggatatt catcgctttt gacaatatag acgacaatgc
     2521 cagg
//
LOCUS       DATDUB010000172         4572 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_643161, whole genome shotgun sequence.
ACCESSION   DATDUB010000172 DATDUB010000000
VERSION     DATDUB010000172.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 4572)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4572)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4572
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_643161"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..347)
                     /locus_tag="VJA84_03435"
     CDS             complement(<1..347)
                     /locus_tag="VJA84_03435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008724929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41210.1"
                     /translation="MKIFIGYPPLDSAKGVALLSQNRQFQYFKKPTYIYPVVPAQAAT
                     LLKKSGYEVIWKDCIAEGWTKEQFYQFIAKENPDIIAFETKTPVVQEHWGIIDKLKSL
                     PTIDYRLSTILFG"
     gene            complement(406..1452)
                     /locus_tag="VJA84_03440"
     CDS             complement(406..1452)
                     /locus_tag="VJA84_03440"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025017.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HLD41211.1"
                     /translation="MTVSIIVAVKGDNPYLRECIEACLKLDYPDFEILVLPDKELNLD
                     YPKTKVIPTGEVTPPIKRDMALDAAQGEILAFLDDDAYPLKDWLTKALSYFSDPEIAA
                     VGGPAVTPESDDLWQKASGLVYSSWVMAGEHRYRYIPGEKREVDDYPSCNFLVRKSAM
                     RRIGGFNTKFWPGEDTFFCLKIIRDLKKKIIYAPEALVYHHRRRLFKGHLKQIANYGL
                     HRGYFVKRFPETSFKFTYFLPSFFVLGLFFGRVVSLLNPALIYPYFLLLSFYFISVLV
                     FTIKGNLFQISPPLAGGVRGGGVSRVFSATWMAVAVEGFRLIFLVFWGIIISHIVYGI
                     YFIKGILSRRLKEE"
     gene            complement(1415..2176)
                     /locus_tag="VJA84_03445"
     CDS             complement(1415..2176)
                     /locus_tag="VJA84_03445"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HLD41212.1"
                     /translation="MKNLKGKVSVIIPAYNEAGSIAENIEETVRVLDEFGCQYEIIVV
                     DDGSRDDTYNQALKAAGRHSNIIVKQIKHNRGKGRALKVGFRLVTGEYVVFLGLDMEL
                     HPAQIQTLFDIMRLDDADVVIGSKRHPNSRLDYPLDRMIISNVYFFLIKLFFGLPIRD
                     TQTGLKLFKYEVLKRVFPRILVKAFGYDLEILVNVHRLGYRIAEAPIVLDTQRYGRIG
                     MDSIWTTWQDTMAIWYRAYVLRYYDRFDHRRGKRR"
     gene            complement(2252..3472)
                     /locus_tag="VJA84_03450"
     CDS             complement(2252..3472)
                     /locus_tag="VJA84_03450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41213.1"
                     /translation="MRLDSFTKNSLIMFAASSLGSFFNLFYQLVMVRVVSKEVFASLN
                     SLLSLLIIISVPCASFVIMVTKHISSHKARNNDRQLRAVWQKLAGHAFWFSLAVFFLI
                     IIFRGNIASFLRLEPGYGIVILAFIFFFSGLSAAVTGGLQGLERFKWLAFITTGAGFL
                     KLFLSFVLVKMVANSLGVALAGFLLPSAFGVILGLWPLWPLLKRNEAREEVDLKKLYR
                     YILPSAAVALCFSLFTNMDMLLVKHFFAGPSQDYAVAQMVGKIILSIAGVIYVVMFSR
                     VSHMHALAQDSRKILKRSLIFTFSLSALVSLGYNLFPSLTLNILAGRSSPEIILLGRL
                     FSLSMLFYALSNVLFYYQLSVEKYVFIGPLLMAAGLQIAAIAVFHQTTVMVGAIVLFS
                     SVSIFLLNLKSALA"
     gene            complement(3688..>4572)
                     /gene="tyrS"
                     /locus_tag="VJA84_03455"
     CDS             complement(3688..>4572)
                     /gene="tyrS"
                     /locus_tag="VJA84_03455"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR00234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004831 - tyrosine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006437 - tyrosyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HLD41214.1"
                     /translation="EDVRRNAATYKEQVFRILDPARTEIAFNNDWFSKMSIYGIFDLL
                     KHSTVSQILARADFRKRMGENIDIKANEFLYPLLQAYDSVRLKADVELGGTDQKFNLL
                     LGRELQKDYGQQEQVVITLPLLEGLDGVNKMSKSLGNYIGINESPVEVFGKILSISDV
                     LMYRYYELLTDEDLTAVRLLHPKEAKENLARIIISQYHGSILAQKAQDEFNKVFKDKE
                     IPSDTPEYKISAPVKILDLLAASGLCGSKNEARRLIQQGAVSFNEEKLKDENSLVQAG
                     GIIKAGSRRFLKVIIYIP"
BASE COUNT         1322 a         1131 c         1013 g         1106 t
ORIGIN      
        1 tcgccgaata aaatagtcga tagtcgatag tctatggtcg gtagagattt cagcttatca
       61 atgatgcccc aatgttcctg aactaccgga gttttggttt caaaggcaat tatatccgga
      121 ttttctttag cgataaactg ataaaattgt tccttagtcc agccctcggc aatgcagtcc
      181 ttccaaatca cctcgtatcc ggacttcttt aaaagcgtgg ctgcctgggc cgggaccacc
      241 ggataaatat atgtgggttt cttaaaatac tggaactggc ggttctggga gagaagcgct
      301 accccttttg cgctatccaa aggcggatac ccgataaaaa tcttcaacta aaaatctcct
      361 cactggtgcg ataaatcgca ccgctacttc tattataaga tacaatcatt cttcctttaa
      421 tctccgagac aatatccctt ttataaaata aataccgtat acaatatgac taattattat
      481 accccaaaaa accagaaaaa tcaaacggaa gccttctact gcaacagcca tccaagtagc
      541 agaaaaaact cgcgatactc cccctcccct gacccctccc gcgaggggag gggaaatttg
      601 gaaaagatta ccttttatag taaaaacaag tacgctgata aaataaaaag atagtaataa
      661 aaaataggga tagattaagg cgggatttaa taaagaaaca actctgccga aaaataatcc
      721 taaaacaaaa aaagacggca ggaaataagt aaacttaaat gaagtctctg ggaatctttt
      781 tacgaaatat ccccggtgca ggccgtaatt ggcaatctgt ttgagatggc ctttgaacag
      841 gcggcggcgg tggtgataaa ctaaggcctc cggggcatag ataatcttct tcttcaggtc
      901 ccggattatc ttcaggcaga aaaaggtgtc ctcccccggc caaaacttgg tgttaaaccc
      961 gccaatccgg cgcatcgcgg attttcttac caggaaattg caggaaggat aatcgtccac
     1021 ttccctcttt tctccgggga tataacggta acggtgctca cccgccatta cccaggagct
     1081 atacaccagg ccgctggctt tctgccagag gtcatccgat tcaggggtaa ctgccggccc
     1141 gcctaccgcc gctatctccg gatcggaaaa atagcttagg gctttagtca gccaatcctt
     1201 gagcggatag gcgtcatcat ccaggaaagc cagtatttcg ccttgtgccg catcaagcgc
     1261 catatccctt ttgatagggg gagtaacctc gccggtagga atgactttag ttttaggata
     1321 atccaggttt agctctttat ccggaaggac caggatctca aaatccggat aatccagctt
     1381 gaggcaggcc tcaatacact cccttaagta aggattatcg ccttttaccg cgacgatgat
     1441 cgaaacggtc atagtatctt aagacataag ccctatacca gatagccatt gtatcttgcc
     1501 aggtagtcca gatggaatcc atgcctatcc tgccgtagcg ctgggtatcc agcacaatcg
     1561 gggcctcggc aatccggtaa cctaaccgat gcacattaac caatatctcc agatcatagc
     1621 caaaggcctt gactagaatc ctgggaaaga ccctttttaa tacctcatac ttaaagagct
     1681 taagcccggt ctgggtgtcc cggataggca ggccgaaaaa taatttaatc agaaaaaaat
     1741 agacattgct gataatcatg cggtctaaag gataatccaa gcgggaatta ggatggcgct
     1801 tggagccgat gactacatcc gcatcatcca agcgcattat gtcaaacaag gtctggatct
     1861 gggccggatg cagttccata tccagaccta agaagaccac atactccccg gtaaccaacc
     1921 taaaacccac tttaagcgcc cggcctttgc cgcggttatg cttgatctgt tttacgatta
     1981 tattactgtg ccggccggcg gcctttaagg cctgattata ggtatcgtcc cggctgccgt
     2041 catcaaccac gatgatttcg tattgacagc cgaattcatc caatacccgg acagtctcct
     2101 ctatattttc ggctatagac cctgcctcgt tataggccgg gattatgact gataccttgc
     2161 ccttgaggtt tttcaccccg caccttcttc cttattcacc tggtactttc taaattttaa
     2221 aactattgaa ttcatagaag gtgcggggtt cctatgccaa tgctgatttc aggtttagca
     2281 ggaatatgga aactgaactg aataagacaa ttgcccccac cattaccgta gtctgatgaa
     2341 atacggctat ggccgcgatc tggagtcccg cggccatcag aagcggcccg ataaaaacat
     2401 atttctctac cgacaactga taataaaaca ggacattgga cagggcgtaa aaaagcatgc
     2461 tcaagctgaa aagccttccc aggaggatga tctcggggct ggagcgcccg gccaggatat
     2521 ttaaggtgag gctgggaaaa agattatacc ccaaagaaac cagcgcgctt aagctaaagg
     2581 tgaagatgag gctgcgcttt aaaatcttcc gggagtcctg ggctaaagcg tgcatatggg
     2641 agacccggga aaacatcacc acatagatca ccccggctat agaaaggata atcttgccca
     2701 ccatctgggc caccgcgtag tcctgggacg gcccggcaaa gaaatgcttt actaagagca
     2761 tatccatatt ggtaaacagg gaaaaacata aagccacggc cgcggacggc aggatataac
     2821 ggtataattt cttaaggtca acctcttccc gcgcctcgtt tctctttaag agcggccaaa
     2881 gcggccaaag gcctaagatg accccaaaag cagaaggcaa taagaatccg gcaagcgcca
     2941 cacccaagga attagcaacc atttttacca aaacaaaaga caaaaaaagc ttcagaaacc
     3001 cggctcccgt cgtaataaag gccagccatt tgaatctctc taaaccctga aggccgccgg
     3061 ttactgccgc cgagagaccg ctaaagaaga atataaaggc caggataaca atcccgtatc
     3121 ccggctcaag gcgcaaaaaa gaggcgatat tacccctaaa aatgataatc agaaaaaata
     3181 cggccaagct aaaccaaaag gcatgcccgg ctaatttctg ccagaccgcc cttaactgcc
     3241 ggtcattgtt cctggccttg tgtgaggaga tgtgcttagt aaccattatc acaaaggacg
     3301 cgcaaggcac ggagattata atcagcaatg aaagcaggga attcaaagag gcaaagacct
     3361 ctttagagac cacccggacc attaccaact gatagaaaag gttaaagaat gagccaaggc
     3421 tggaagcggc aaacattatc aggctgtttt tggtgaagga atctaagcgc ataataacaa
     3481 attgtcataa atcgcgcgcc taaccccgcc cacaaggaga ctgggtcata atctcttaaa
     3541 atgaccatta agtcattcta agggaacaga gcgaccgaag aatctcgtcg gtaatttaaa
     3601 agacgggatc cttccccttc gcttgcgctc agggtcagga tgacattgtg acacagtctg
     3661 aaggggaggg gattcgttac gcaattatta aggtatatat attataacct ttaaaaaacg
     3721 gcggctgccg gccttgataa tcccgccggc ctggaccagg gaattctcgt ctttaagttt
     3781 ttcttcgtta aaactcaccg ccccctgctg gataagcctg cgggcctcat ttttagagcc
     3841 gcacaatccg ctggcggcaa gcaggtcaag gattttgact ggagcgctta ttttgtattc
     3901 cggggtatca gaagggattt ctttatcttt aaacaccttg ttaaactcat cctgggcctt
     3961 ttgggcgagg atactgccgt gatactggct gatgattatc cgggccaggt tctccttggc
     4021 ctctttagga tgcaggagtc tcaccgcggt taggtcttca tcagtaagca gttcgtaata
     4081 acgatacatc aaaacatcgc ttatggacaa aatcttgccg aacacctcca cagggctttc
     4141 gttgatcccg atatagttgc ccagggactt gctcatttta tttactccat ccaagccctc
     4201 cagaagaggc agggtgatca ccacctgttc ctgctggccg tagtcttttt gcaattcccg
     4261 gcccaggagc agattgaatt tttggtctgt ccctcctaat tccacatccg cttttaagcg
     4321 cacggaatca taggcctgca ataacggata gagaaactca ttcgccttga tatctatatt
     4381 ctcgcccatc cgcttacgga aatccgcccg cgcgagtatt tgagatacgg tagaatgctt
     4441 cagcaaatca aagatgccgt atatagacat ctttgaaaac cagtcgttat taaaggctat
     4501 ctcggtcctg gcggggtcta aaatcctaaa aacctgttct ttataagtcg cggcattacg
     4561 tcggacatct tc
//
LOCUS       DATDUB010000173         2784 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1642328, whole genome shotgun sequence.
ACCESSION   DATDUB010000173 DATDUB010000000
VERSION     DATDUB010000173.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2784)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2784)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2784
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1642328"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..770
                     /locus_tag="VJA84_03460"
     CDS             <1..770
                     /locus_tag="VJA84_03460"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HLD41215.1"
                     /translation="LREDWPLLIENLRENNIQVGIITNGIKIDARSAKVLADFKVKWV
                     QISIDGASPKTHDAVRGLAGGWEKSVNAIRLLRKNGVRAHVSFEPTRINYRDVKKVVA
                     LCVEMGLEYFVTDMLVLTGRAVKNFDDIKLTAGEYSEFYDLVEEAAADYSGKITIIAP
                     SRREKETLKTYVKTRSAAPNIWCIITPQGSCRLDLLLPFTYGDLRKQSIQYVWDNFLR
                     SGWERPEVHDFINNLNKMSDLAKNKVVPYVSDNIHCQ"
     gene            742..1035
                     /locus_tag="VJA84_03465"
     CDS             742..1035
                     /locus_tag="VJA84_03465"
                     /inference="COORDINATES: protein motif:HMM:NF017239.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PqqD family protein"
                     /protein_id="HLD41216.1"
                     /translation="MSRTISIASEPKIANNINWRRDGEANQLIIVSKEDLPLPLILNP
                     TAALIFSLCDGRHSLEKIAERLCAEFNQDDFSLALEDVKKQIEYFVAKCIVSV"
     gene            1062..1238
                     /locus_tag="VJA84_03470"
     CDS             1062..1238
                     /locus_tag="VJA84_03470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41217.1"
                     /translation="MARRKSEGAGRKGCVKESGLKNYLHPKTASMEEFTLKTAVGVSP
                     AMKKNDGYIVSTLF"
     gene            1434..2375
                     /locus_tag="VJA84_03475"
     CDS             1434..2375
                     /locus_tag="VJA84_03475"
                     /inference="COORDINATES: protein motif:HMM:NF013226.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prenyltransferase"
                     /protein_id="HLD41218.1"
                     /translation="MPVKIRQLIKKSPVLWVRAWLRVLGPPFIALTLAVSLLGAAIVF
                     RWTGRLDLWLWFLSALGLMLIHFGTSSLNDYFDYLSGTDNINKTPTPYSGGSRVLQDG
                     SLSPKSLLLGGSLFIAVGSVIGIYLSLLQGWLVFWLGLTGVFLGVGYVHPKINLSKRG
                     VGELAVAVAFGPIMLLGVYYVQTQAINRDILLIGLMMGLLAMSVLWINEIPDYEADKT
                     TGKNNWVVRLGKKVSSRVYVFWLSLTYLLALILIVKGILPKAALIVFFTALLAFKSCR
                     IALKNYNEVEKLLPANALAIALTLSFGALLSLSFLIK"
     gene            2372..>2784
                     /locus_tag="VJA84_03480"
     CDS             2372..>2784
                     /locus_tag="VJA84_03480"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HLD41219.1"
                     /translation="MRPLRLIFWETTRACNLECPHCRASAVKNRPPEELTTQEAKRFI
                     DSAASFSKPILVFSGGEALLREDIFELIEYAFGAGLKPTLASNASLITPDTAARLKQS
                     GTRLIAVSLYCSNAQAHDDFCGQSGAFEKSLQGIR"
BASE COUNT          659 a          616 c          751 g          758 t
ORIGIN      
        1 tgttaaggga ggattggccg cttttgattg agaacctgcg cgagaataat atccaggtgg
       61 ggataattac taatgggatt aagattgacg cccgctccgc caaggtcttg gctgacttta
      121 aggtgaaatg ggtgcagatc agtattgacg gggccagtcc aaagactcac gacgcggtcc
      181 ggggcctggc cggagggtgg gaaaagtccg tcaacgccat ccgccttttg cgcaagaatg
      241 gtgtgcgcgc ccatgtctcc tttgagccga cccggataaa ctaccgggat gtgaaaaagg
      301 tggtggcctt atgcgtggag atgggcctgg agtattttgt taccgatatg ctggtcctta
      361 ccggccgggc ggtcaagaat tttgacgata tcaagctcac tgccggcgaa tattcggaat
      421 tctacgattt ggtggaagag gcggcggcgg attattccgg caagattact attatcgccc
      481 cttcccgcag ggaaaaggag accttaaaga cttatgttaa gaccaggagc gcggccccga
      541 atatctggtg catcattact ccccagggtt cctgccggct ggacctgctc ttgcccttta
      601 cttatggaga cctgcgcaag cagagtatcc agtatgtctg ggataatttt ctgcgttcag
      661 gatgggagcg gccggaggtc catgatttta tcaataacct gaataaaatg tcggatttag
      721 ccaaaaacaa ggtggtgcca tatgtctcgg acaatatcca ttgccagtga gccaaaaata
      781 gccaataata taaattggcg ccgggacggt gaagcgaacc agttgataat agtttctaag
      841 gaggatttgc ctttgccgtt aatccttaac cctacggcgg ccttgatttt ttccttatgc
      901 gacggcagac attctttgga aaagattgcc gaaaggctgt gcgcggaatt caaccaggat
      961 gatttttccc tggcgcttga ggatgtgaag aaacagatag agtattttgt cgcaaagtgt
     1021 attgtcagtg tttaacctga tttaataaaa ggaggagtaa aatggccaga agaaagagcg
     1081 aaggagcagg caggaaaggg tgtgtcaagg agagcggatt gaagaattat cttcatccca
     1141 agaccgcttc tatggaagag tttaccttaa agaccgcggt aggtgtatcc ccggcaatga
     1201 agaagaacga cgggtatatc gtttccacat tattctaagg aacgaataaa cttaagaacc
     1261 gaaaaacatg attcccctcc ccttgtggga ggggttaggg gaggggtaaa tcggcagttt
     1321 atcgccacca cctaacctcc cccattaagg gggaggaacc atagaaaatt attgcgatcg
     1381 tttgtatatc atttgttttc ggtttttctg ttctttggtt ctttcgttaa aatatgcccg
     1441 taaaaatacg ccagcttatc aagaagtccc cggtcctctg ggtgagggca tggttgagag
     1501 tcttggggcc gccgtttatc gccctgactt tagccgtatc cttattgggg gcggcgattg
     1561 tctttaggtg gactggacgg ctggatttat ggctctggtt tctctccgcg ctgggtttga
     1621 tgttgattca ctttggcacc agttccttaa atgactactt tgattacctt tccggaacgg
     1681 ataatatcaa taaaacccct acgccttaca gtggaggcag ccgggtcctc caggacggct
     1741 cgcttagtcc caagtctctg cttttaggcg ggagtttgtt tattgctgtt ggttccgtaa
     1801 tcggcatata tctaagcctg cttcagggct ggctggtatt ctggctgggc ctgaccgggg
     1861 tattcttagg cgtaggctat gtgcatccca agatcaatct ctctaaaaga ggggtggggg
     1921 aattggctgt ggctgtggcc tttggaccga taatgctctt aggggtttat tatgtccaga
     1981 cccaggccat aaatagagac atattgctta tcggcctgat gatggggctt ttggcaatga
     2041 gcgtcttatg gataaatgag atcccggact atgaggcgga taagactacc ggtaaaaaca
     2101 actgggtggt gcgcctgggg aaaaaggttt ccagccgggt ttatgtgttc tggttgagcc
     2161 tcacctattt gctggccttg attctgattg tcaagggtat cctgcctaag gccgctctta
     2221 ttgtcttttt taccgcgcta ttggccttta agtcctgccg gattgcctta aagaattata
     2281 atgaagtgga aaagctcttg ccggccaatg ccctggccat tgcccttacc ttgagtttcg
     2341 gcgcgctctt aagcctctct tttctgatta aatgaggcct ttacggctta tcttttggga
     2401 aaccacccgg gcctgcaatt tggagtgccc gcactgccgg gcctcggcag tcaagaatcg
     2461 cccgcctgaa gaactcacta cccaggaagc caaaaggttt attgattccg ccgcctcttt
     2521 ttctaagccc atattggttt tctccggagg cgaggcctta ttaagggaag atatctttga
     2581 attgattgag tatgccttcg gggccggact taagccgact ttagccagca atgcctcatt
     2641 gattacccct gatactgccg cgagattaaa gcaaagcgga acaaggttaa tcgcggtttc
     2701 cctttattgt tcaaatgccc aggcccacga tgacttttgt ggacagtctg gggcctttga
     2761 aaaatctctg cagggaattc ggaa
//
LOCUS       DATDUB010000174         2885 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_643434, whole genome shotgun sequence.
ACCESSION   DATDUB010000174 DATDUB010000000
VERSION     DATDUB010000174.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2885)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2885)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2885
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_643434"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(430..1257)
                     /locus_tag="VJA84_03485"
     CDS             complement(430..1257)
                     /locus_tag="VJA84_03485"
                     /inference="COORDINATES: protein motif:HMM:NF018894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035438 - cyclic-di-GMP binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HLD41220.1"
                     /translation="MENIEDKLVRDKVISKEQYNRAKEEAYRCQKSFWSSLVKLGFLS
                     GEDLAVIFAQESGVPYARISDYKLNPEVMKLLEEDFCRQNSVIPLFKINGVLFSACAN
                     PLNTAFMDNMARILGLEIEPLFAPEEAIIKALDSYYGPQDKAFSAVELIIKQPALEGL
                     PFWRESERLSLNVPVSITIDDTSLVNPCAQPIESFSRDISRNGAALGIEILFYLPKGA
                     KISIDFKPPQSPQPIKAKGEIIYCRMEKSKNYFLGIKFSQISSEALAQLLKLAESRK"
     gene            complement(1290..2150)
                     /locus_tag="VJA84_03490"
     CDS             complement(1290..2150)
                     /locus_tag="VJA84_03490"
                     /inference="COORDINATES: protein motif:HMM:NF014043.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0110001 - toxin-antitoxin complex
                     [Evidence IEA];
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HepT-like ribonuclease domain-containing
                     protein"
                     /protein_id="HLD41221.1"
                     /translation="MILPAKINMEELKDYFANQKNISMAFIFGSFAKGQHLPDSDVDI
                     AVYFNPQGRAVEWEEETFYPEEDRIWRELENLLDREVDLLILNRAPSTMASKIIKTGL
                     PIFIKDRSFYWRFFLTVNSASADFKEFIQNYRRIRERSKSLNAEDKEQLENLIDFLEE
                     ELKSYGEFRGLNQTLYESDRGKKRNVEHWVEGIALCSIDIAEIVLASEKIRLPEKYKE
                     ILKSLSLLKDFDKNTAERLGRLAGLRNMITHEYLDIRWRQIEEFIKTSQPLYEYLIAF
                     VKKNFLRDGK"
     gene            complement(2147..2713)
                     /locus_tag="VJA84_03495"
     CDS             complement(2147..2713)
                     /locus_tag="VJA84_03495"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HLD41222.1"
                     /translation="MPKHKILLLDDEQNIINSVTRIIRGDDREIVSANDADSAWDLLK
                     KINGVDLIISDNKLPTISGVDFLTKVRQLYPDTIRILITGYPDLESTIRAINAGQIYR
                     FITKPWENEELKMTVNQALDYCDILKDNRALIALARKQSEALNTMQKRYNISQSEFDK
                     SGVYIIDEQKVSETLDEFMKKYYPQGIK"
     gene            complement(2700..>2885)
                     /locus_tag="VJA84_03500"
     CDS             complement(2700..>2885)
                     /locus_tag="VJA84_03500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41223.1"
                     /translation="AKKTINAEGIVTWSRKEPVKAEDGENLPAGMGIMFTKITPMLAK
                     SDLKQLIETEDKKSAQT"
BASE COUNT          673 a          668 c          706 g          838 t
ORIGIN      
        1 taagatgtcc acagtattca caggttttcc acaagccaga gggcggttgt gcggcttcca
       61 atagccgcgg ccataggcaa agccacaggg aaaaaacaaa aaataacctt tttgtcttaa
      121 gggcaatcgt ctaagacaat agtagttaga aacaaaactt attgatttta caagcgatta
      181 tgtttgaaga caactatatt atagcagata agggagaatg agcaagggaa aattcagact
      241 gggtcataat gtcatcctaa gcgctagcga aggatctcgt ttttcaaatt actgacgaga
      301 ttcttcggtc gctctgctcc ctcagaatga caaaatggtc agtttaagag attatgaccc
      361 agcctgattg taagtctggt aatcggtcac taatcgagag taaaaatggg tggccagggg
      421 atgcggtaac tatttgcggc tctcggccag ctttaggagc tgggccaggg cttcggagga
      481 gatttggctg aattttatgc ccaggaagta gtttttgctc ttttccatcc ggcaatagat
      541 gatttctcct tttgccttga tgggttgagg ggattgagga ggcttaaaat ctatggaaat
      601 tttagcgcct ttaggcagat agaaaagtat ttctatgcct aaggccgcgc cgttgcggga
      661 gatgtcccgg ctaaaacttt ctatgggctg ggcgcaaggg ttgactaagg aggtgtcatc
      721 tatagttatg cttaccggaa cattcaggct caagcgttcg gattcccgcc aaaagggaag
      781 gccctccagg gccggctgtt taataatcaa ctcaacagcg gaaaaagcct tgtcctgggg
      841 cccatagtag gaatccaggg ctttaattat ggcctcttcc ggggcaaaca agggctctat
      901 ctccaggcct aatatacggg ccatattatc cataaaggcg gtgtttaatg gattggcgca
      961 ggcgctaaaa aggacgccgt taatcttaaa cagcggaata accgagttct ggcggcagaa
     1021 atcctcttcc aggagtttca ttacttcagg attgagctta taatcggaga tccgcgcgta
     1081 ggggacgccg ctttcctggg caaagatcac cgccaggtcc tcgccagaca aaaaccccag
     1141 ttttaccagc gagctccaga aggacttttg gcatctatag gcctcttcct tggcccggtt
     1201 gtattgttct ttgctgatta ccttatcccg cactagtttg tcttcaatgt tttccataat
     1261 cggttaccct ttttcttaat cgcggctttc tatttcccat ctcggaggaa atttttcttt
     1321 acgaaagcaa tcaaatattc atagagcggc tgggaagttt ttataaactc ttctatctgc
     1381 cgccagcgga tatccagata ttcatgggta atcatgttcc ttagtcccgc gagcctgccc
     1441 agcctctcgg cagtgttttt atcaaagtct ttcaggagag agagcgattt caggatctcc
     1501 ttatatttct ccggcaggcg gattttctcc gaagccagaa caatctcggc gatatcaata
     1561 gagcaaagcg cgatgccttc cacccaatgc tcaacatttc tttttttgcc gcggtcggat
     1621 tcataaagcg tttgattgag cccccggaat tccccgtaag attttaattc ttcttccagg
     1681 aaatcaatca aattttccag ctgttccttg tcttccgcgt ttaaggattt tgacctttcc
     1741 cggatccgcc tgtagttttg gatgaattct ttaaagtccg cggacgcgga attaacggtc
     1801 aggaagaacc tccagtaaaa ggagcggtct tttataaata tgggcaggcc ggtctttatg
     1861 atcttagagg ccatcgtgct cggggcccgg ttgaggatca gaaggtcaac ctctctatcc
     1921 aggagatttt ccaactcccg ccatatccgg tcttcttcgg gataaaaggt ctcttcttcc
     1981 cattccacgg ccctgccttg cggattgaaa taaaccgcga tatccacatc ggaatccggc
     2041 aggtgctggc ctttggcgaa agatccaaag ataaaggcca tagagatatt tttctggttc
     2101 gcgaaatagt ctttcaactc ttccatatta atcttagccg gcaggatcat tttatcccct
     2161 gggggtaata ctttttcata aactcatcca gggtctcgga gaccttttgc tcgtcaatga
     2221 tgtagacccc gcttttgtca aactcgcttt ggctgatgtt gtatcttttt tgcatcgtgt
     2281 ttaaggcctc ggactgcttc ctggccaggg cgatcagggc ccggttgtcc ttgaggatgt
     2341 cgcagtaatc taaggcctga ttgacggtca tttttaattc ctcgttttcc cagggtttgg
     2401 tgataaagcg atagatctgg ccggcgttga tggccctgat agtagactcc aggtcgggat
     2461 agccggtaat caggatgcgg atagtgtccg gataaagctg gcggaccttg gttaaaaagt
     2521 ctacccctga aatggtgggg agtttgttgt cggagatgat caggtcaacc ccgtttattt
     2581 ttttcagcag gtcccaggcg ctgtcggcat cgttggcgct cacaatctcc cggtcatcgc
     2641 cgcggattat ccgggttacg ctgttaatga tattttgttc gtcgtccaaa agcaggattt
     2701 tatgtttggg cacttttttt gtcctccgtt tcaatcagct gttttaaatc gcttttggcc
     2761 agcatcgggg tgatcttggt gaacattatc cccattcccg cgggcaggtt ctctccgtct
     2821 tcggccttca ccggctcttt gcggctccag gtgacgatgc cttcggcgtt tatggttttt
     2881 ttggc
//
LOCUS       DATDUB010000175         2142 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1962795, whole genome shotgun sequence.
ACCESSION   DATDUB010000175 DATDUB010000000
VERSION     DATDUB010000175.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2142)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2142)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2142
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1962795"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..405)
                     /locus_tag="VJA84_03505"
     CDS             complement(<1..405)
                     /locus_tag="VJA84_03505"
                     /inference="COORDINATES: protein motif:HMM:NF012702.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HLD41224.1"
                     /translation="MYRLKRLRKSRALRDLIAQACISPDNLVMPYFVREGRKMKQPVS
                     AMPGVFRFSPDELLKEIERLKRSGVNSVILFGLPWEKDDAGSSGYSENGVIQKAVLAL
                     KKNFGDELAVITDVCLCGYTKHGHCGVIEKSHK"
     gene            complement(393..818)
                     /locus_tag="VJA84_03510"
     CDS             complement(393..818)
                     /locus_tag="VJA84_03510"
                     /inference="COORDINATES: protein motif:HMM:NF025819.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M67 family metallopeptidase"
                     /protein_id="HLD41225.1"
                     /translation="MDKSGKGKVLIKRDIYEELIRQCLKDPAREVCGILAGRDKIIEK
                     IFPLANISDSPKLCYHIDPKEQLAVFKQLRNQGLELSAIYHSHVDSPAYPSAKDIELA
                     FYPESSYIIVSLFDPESPVARSFRIVEGKIEEEELVCID"
     gene            complement(821..1762)
                     /locus_tag="VJA84_03515"
     CDS             complement(821..1762)
                     /locus_tag="VJA84_03515"
                     /inference="COORDINATES: protein motif:HMM:NF013543.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006817 - phosphate ion transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HLD41226.1"
                     /translation="MLFFAMNMGASGIAPAFAGMYGGRMIKKRKALLLFPIFVILGAI
                     LMGRNVALTLGKSLLPAGLISFDAALIILASAALSLFLANILKIPQSTSQVTVGAAVG
                     AGLYLGHLNTDTLFLKILPLWIVLPLASYLLTFLLYRKIYTPEHDNLHIYQKIFANKK
                     KMKLTALIASCYVAFAIGTNNVANAVGPLYGAGILGINTGLMLIAPLFGIGAWLLGKG
                     TLETVGREIVPLGPVSGTLVSFVTASLLIFASSLGIPQSLVQLNLAAIFSISCVKNGH
                     RHTLDQHLTRKTFLVWAVTPLISIGVSYLLLSLFLRK"
     gene            complement(1808..>2142)
                     /locus_tag="VJA84_03520"
     CDS             complement(1808..>2142)
                     /locus_tag="VJA84_03520"
                     /inference="COORDINATES: protein motif:HMM:NF013658.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="phosphoadenosine phosphosulfate reductase family
                     protein"
                     /protein_id="HLD41227.1"
                     /translation="WVTGLRCTEGRTRTDYKEVEERDKGLVKLNPILIWKEREVWQYL
                     AVYGVRVNLLYAEGYRSLGCAPCTKINSDDNERAGRWLGTSKCGGECGIHTRPLKKVR
                     SDDALQLI"
BASE COUNT          602 a          595 c          444 g          501 t
ORIGIN      
        1 tttgtgactc ttttctatta cgccgcaatg cccatgctta gtatagccgc acaaacagac
       61 atcggtaatt actgccaatt catcgccaaa atttttcttt aaggccagga ccgccttctg
      121 aataaccccg ttttcagaat agccgcttga gccggcatca tccttctccc aaggaaggcc
      181 aaaaaggata accgagttca ccccggagcg ttttagccgc tcaatctctt ttaaaagttc
      241 atcaggggaa aaacgaaaaa ccccgggcat cgccgataca ggctgtttca tcttccggcc
      301 ctcacgaaca aaataaggca tcaccaggtt atccggacta atacaggcct gggcaatcaa
      361 atccctgagg gccctacttt tgcgtaatct ctttaatcta tacataccaa ttcctcttcc
      421 tcaatcttgc cctccacaat ccggaatgac cgcgccacag gagattcagg atcaaacaag
      481 gaaacaataa tatatgaact ctccggataa aaggccagtt caatatcctt agccgacgga
      541 taagccgggc tgtccacatg ggagtgatat atggcgctaa gttctaaacc ctgattacgc
      601 agctgcttga acaccgccaa ctgctcttta gggtcaatat gatagcagag tttgggactg
      661 tcggaaatat tggccagagg aaaaatcttc tctattattt tatccctgcc ggcgagtatt
      721 ccgcaaacct cccttgccgg gtccttcagg cactggcgga tcaactcctc ataaatatcc
      781 cgcttaatca aaaccttccc tttgccggat ttatccatct ttatttcctt aagaacaaag
      841 acaacaataa atagctcacc cctatggaaa tcaaaggtgt aaccgcccag accagaaagg
      901 tcttgcgggt caggtgctgg tctaaggtat gcctatgccc gttctttaca cagctaatgg
      961 aaaaaatagc ggccaagtta agctgaacca aagactgcgg gatgcctaag cttgaggcaa
     1021 agataagcag ggaagcggta acaaaagaaa ccagcgtccc ggaaaccggc cccagaggca
     1081 caatttcccg gcccacggtt tcaagagttc ccttacctaa cagccaagcc cctatcccga
     1141 ataaaggagc aatgagcatc aacccggtat ttatacctaa aataccggct ccgtataaag
     1201 gccctacggc attggccaca ttattagtgc cgatggcaaa ggcaacataa caactggcga
     1261 ttaaagccgt caacttcatt ttcttcttat tggcgaatat cttctgataa atatgcagat
     1321 tatcgtgctc cggcgtataa atcttgcggt agagcaggaa tgtcagcaga taactggcca
     1381 aaggcaggac aatccacagc gggagtattt ttaaaaaaag ggtatccgta ttcagatgcc
     1441 ccaaatataa tcccgccccc actgccgcgc ctacggttac ctggctggtg gactggggaa
     1501 tcttcaaaat attagccaga aaaaggctta gcgccgccga agccaggatt atcaaagccg
     1561 cgtcaaagct tattaatccg gcaggcaata aacttttccc cagagtcagc gccacattcc
     1621 tacccatcaa aatcgccccc agaattacaa agatggggaa aagaagcagg gccttcctct
     1681 tttttatcat cctcccgcca tacatcccag cgaaagcggg ggcaatgccg ctggccccca
     1741 tattcatggc gaagaatagc actaccgcga ttaaaatacc ctctttaatc aagatctccc
     1801 ctcttcctta aatcaactgc agggcgtcgt ccgaacgcac cttctttagc ggacgggtat
     1861 gaattccgca ctctccgccg catttactgg tgcccagcca gcgtccggct cgttcgttat
     1921 catcactgtt aatcttggtg caaggagcac agcctaaaga gcgatagccc tcggcatata
     1981 aaagattaac cctgaccccg taaaccgcca gatactgcca gacttctctt tccttccaga
     2041 ttaagatagg attgagttta accaggccct tatcccgctc ctcaacctct ttataatcgg
     2101 tgcgggtgcg gccctcggta cagcgcagtc cggtaaccca gc
//
LOCUS       DATDUB010000176         4861 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_969810, whole genome shotgun sequence.
ACCESSION   DATDUB010000176 DATDUB010000000
VERSION     DATDUB010000176.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 4861)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4861)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4861
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_969810"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2448
                     /locus_tag="VJA84_03525"
     CDS             <1..2448
                     /locus_tag="VJA84_03525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41228.1"
                     /translation="RLYRRKGELDKKVSDTRAQARELIRQAGADAIEVIAAKNTIKAQ
                     DKKDKALEKSAADKKAAEINKIIAPKRQELLVSLMNKDRQAIEEVFKGYKPYLEPETY
                     QQAVAKFVVYQKLYRNEALDDLGDNFKGFQGDAAVSQPSLEFQRKLQDEVRRNPYCQA
                     LLKDRQNKEELEALYRSLREVKGKGADISLLNFTIVLSKIIVKTGVERSSKWEAYKKE
                     FEDIKKWADQALACENYLYVLGRHESLNDEDKQAIVYYGFKQKELGLEVKKNIIQGNF
                     RFLQFLKEAKQDIGFYLSSDLISFLILNAASFLQKMLGSADPAEVNSARQALDKDIES
                     LLKQLEGDVSNRRQVIAGKEEIIKQEKWFTDISGTFLFREVVTADNKVYLGYYPLDED
                     VYNLTHNVIYRDTRHNSAMWVSVDNPTQDVLNLDAFNQENLSINTSQIIHLNEVADNQ
                     DFALALRVDTSTLLASQDLGSQADVLERRFGLEFSQQNKDVRYGEFFNLFLNEEGDPT
                     YVLGLRRDTKNTNLQAGLQMDENGRLSFFAGARRLYTINGNPGQVALNYQDQTVRLRY
                     QQRLGLWEVGGLIQWDMEEATLVLGQEVQRYITKNTAVGMGVRHESDENKTVIYGIIT
                     RRGILGMGEVSLKAGASLDGEPFLQLVARKSVGNTEPYITAQQEAGNASARLGANYYT
                     PGNNRFGGFIQGSGDNILDRAALEAAYNNTTGSIFMQNSSDNMEPGAQIEQTIWGGVK
                     KNPIPAGQADALILTPLGNILFEQERYKVIINKIQLELSQRLQRNNSLTIEEIKDALS
                     TGKFFGFGGSILGLGDL"
     gene            2449..>4861
                     /locus_tag="VJA84_03530"
     CDS             2449..>4861
                     /locus_tag="VJA84_03530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41229.1"
                     /translation="MERQLQFFSQQTDLPLYLGYAGTDRRIDLMRPIDFWEFIYWQAK
                     LDASAKNEEEVKGRIHRFAQLKDEIAGIMGVAANLVNPEFTAGLRAWVSETAGERIDE
                     VEIFLQRVKETKDGATRKANPFVLNLNLNEAPAWDFLLGWTKERLSWQKEGLDSARVF
                     GYLTNILNSHNVALDFESRAPPKVAEQISLAKKMAKESQAKPLASRQINEFLAVYNQE
                     LVKGLSEEVRFDLSLRFARESPVFIPSYLESAIKVIQEKVIRNPQLLEKYLSGVSLQE
                     REDYQDKLLAHLIFLQYQDNGLAQYLERIPLVKADFEGLLNNSGGKDVSYLGKQPEVF
                     RIDLNRDLKHLHYWVKAQAISGRSIPEIFSGIPAEFFNGNPVYVSCKDIQRFKQNTRE
                     LTEDKYKAWLKDIQAFYAKQGAEAVEVKLNSVRSNEGFIATATEKGIFIQESFLKSPR
                     QYIQGLLNGGLGLTDFERERLGHLLSVSDNEIIKLVLAHEYGASLGFSDGVNHLFERL
                     YLGGELSNDEAAALKREIILYQGAGVIDSGYMLGDLSILGQAFSSDYSGTSRKGSKVK
                     ANSYSAETKNAAATAYSAEFETAVNTFYSDWQASAHSDDINTLILKPIYGIDLSNGLD
                     DSDKTAFGNNTAPQYNPLYNKDGSLKNSSEIQATVDFFAAVTVFYREWEASSKRDDIN
                     TYILLPAYDVDFSDYEIDLSDLTALGDDDASTDYNPLYNEDTSLKSDSDIAADMDFYE
                     EAVDYYNAYLSSNTSKVDEVHKAFKHPKDSSKYLDLSDGINGDDLYILGYYDATTNTG
                     YGLIYA"
BASE COUNT         1262 a         1106 c         1357 g         1136 t
ORIGIN      
        1 cgtttatata ggcgcaaagg ggaattggat aaaaaagtgt cggatacgcg cgctcaggcc
       61 cgggaattga tccgccaggc cggcgctgac gcgattgagg tgatcgcggc caagaatacg
      121 attaaggccc aggacaagaa ggataaggcc ctggaaaagt ctgccgcgga taaaaaggcc
      181 gcggaaataa ataagattat cgcccctaaa cgacaggaac tgctggtaag cctgatgaat
      241 aaggaccgcc aggccataga agaggtgttc aagggatata agccttactt agagccggaa
      301 acctatcagc aggctgtcgc taaatttgtc gtctatcaga aattataccg caacgaggcc
      361 ttggatgact taggggataa ttttaagggc tttcaggggg acgcggcggt cagccagcct
      421 tctttggaat tccaacgcaa gctccaggat gaggtaaggc gcaatcctta ttgccaggcc
      481 ctgcttaagg accggcagaa taaagaggaa ctggaggccc tataccgttc cttgagagag
      541 gtaaaaggca aaggcgcgga catatcgctc ttaaacttta ctattgtgct ttccaagata
      601 atcgtcaaga ccggggtgga aagatcctca aagtgggagg cctataagaa agaatttgag
      661 gatatcaaga aatgggcgga ccaggccctt gcttgcgaga attatcttta tgtcctgggc
      721 cgccacgaaa gccttaatga tgaggataag caggcgattg tttattacgg gtttaagcag
      781 aaagagctgg gtttagaggt gaaaaagaat atcatccagg gcaatttccg cttcctgcag
      841 ttcctcaaag aggccaagca ggatatcggg ttttatctgt cttccgacct gatcagcttc
      901 ttgattctga atgccgcttc attcctgcag aagatgctgg gttcagccga cccggcagag
      961 gtcaattccg cccgccaggc attagacaag gatattgagt ctctgcttaa gcagttagag
     1021 ggggatgttt ctaaccgcag gcaggtcatt gccggtaaag aagagataat caagcaggaa
     1081 aaatggttca ccgatatcag cgggacattc ctgttccggg aggtggttac cgcggataac
     1141 aaggtttacc tgggctatta tcccttagat gaggatgtct ataaccttac ccataatgtg
     1201 atttaccggg atacccggca taactcggca atgtgggtct cggtggataa tcccacccag
     1261 gatgtgttaa acttggatgc ctttaaccag gagaatttaa gtatcaatac ctcccagatt
     1321 atacacttaa acgaggtggc ggacaatcag gactttgccc tggccttgcg cgtggatacc
     1381 tctaccctcc tggcatccca ggacctgggc tctcaagcgg atgtgctgga gcggcgtttt
     1441 ggcctggagt tcagccagca gaataaggat gtccgttacg gggaattctt taatttattc
     1501 cttaatgagg agggcgaccc cacttatgtc cttggcctgc gccgggatac caaaaatacc
     1561 aatctccagg ccggactgca gatggatgaa aatggccggc tttccttctt tgccggggcc
     1621 cgccggcttt atactatcaa cggtaatccc ggacaggtgg ccctgaatta ccaggaccag
     1681 accgtgcgct tgagatacca gcagaggctg gggctttggg aggttggcgg gcttatccag
     1741 tgggatatgg aagaggccac tctggtctta ggccaggagg tgcaaagata tatcaccaag
     1801 aataccgccg tgggtatggg ggtgcgccat gagagcgatg agaataagac tgtaatctac
     1861 ggcattatca cccggcgggg gatattgggg atgggagagg tttcccttaa ggccggggcc
     1921 agcttggatg gagagccgtt cctgcagttg gtggccagga agtcagtggg caataccgag
     1981 ccgtatataa ccgcccagca ggaggcaggc aatgccagcg ccaggttagg ggccaattat
     2041 tacaccccgg gaaataatcg cttcggcggc tttatccagg ggtcgggaga caatatctta
     2101 gaccgcgcgg ccctggaggc ggcttataac aacaccaccg gaagcatctt tatgcaaaac
     2161 agcagtgaca atatggagcc cggggcccag atagagcaga ccatctgggg aggggtaaag
     2221 aaaaatccta ttcccgccgg ccaggcggat gccctgattt tgacccccct ggggaatatc
     2281 ctctttgagc aggagcgcta taaggttatt atcaataaga tccagctgga attaagccag
     2341 agactgcaga gaaataacag cttaactatt gaagagatca aggacgcgct ttctacaggc
     2401 aagttcttcg gcttcggagg ctctatctta ggattaggcg acttgtagtt ggaaaggcag
     2461 ctgcagtttt ttagccagca gaccgacctg cctctctatt taggctatgc cggcactgac
     2521 cgcaggatag acctgatgcg gccgattgat ttctgggagt ttatctattg gcaggccaag
     2581 ctggatgcca gcgccaagaa tgaagaagaa gtcaaggggc ggattcaccg ttttgcccag
     2641 ctaaaggatg agattgccgg gattatggga gtggcggcca atctggttaa cccggaattt
     2701 accgccggct tacgggcctg ggtgagcgaa accgcgggag agcggataga tgaggtagag
     2761 atattcctgc aaagagtcaa agagaccaag gatggggcta cccgcaaggc caacccgttt
     2821 gtcctgaacc tgaatttaaa tgaggccccg gcctgggatt tcctcttagg ctggaccaag
     2881 gaaagattga gctggcagaa ggaagggctg gattcggcgc gggtattcgg atatttgact
     2941 aatatcttaa acagccataa tgtggctttg gattttgagt cccgggcccc tcccaaggtg
     3001 gccgagcaga taagcttagc caagaagatg gccaaggaaa gccaggccaa gccccttgct
     3061 tcccgccaga taaacgagtt cctggcagtc tataatcagg agcttgttaa gggtttgtct
     3121 gaagaggtcc gttttgattt aagcctgcgt tttgcccggg aatccccggt ttttatcccc
     3181 tcatatttag aatccgcgat caaggtcatt caggaaaaag tcatccgcaa tccccagcta
     3241 ttagaaaaat acctaagcgg tgtttctttg caggagaggg aagattatca ggataagctc
     3301 ctggcccatc ttatcttcct gcaatatcag gataacgggc tggcccagta tttagagcgg
     3361 atccccttgg tcaaggccga ctttgagggc ttgttgaaca attctggcgg caaggatgtg
     3421 tcttatttgg gcaaacagcc ggaagtcttc cggattgact taaaccgcga cttgaaacat
     3481 ctccactatt gggttaaggc ccaggcaata tcaggcaggt ctattccgga gatattcagc
     3541 ggcataccag cggagttctt taacggcaat ccggtgtatg tcagctgtaa agacatccag
     3601 cgctttaagc agaatacccg ggagctgacc gaggataagt ataaggcatg gcttaaggat
     3661 atccaggcct tctatgcgaa gcagggagcg gaggctgtgg aggttaagct gaactcggta
     3721 aggagtaacg aaggatttat agccactgcc actgaaaaag gcatatttat ccaggagtcc
     3781 ttcttgaagt cgccgcgcca gtatatccag ggtctgctta atggcggctt ggggctgact
     3841 gattttgagc gggagaggtt aggacacctg ctttctgtgt ccgataatga gataattaag
     3901 ctggtgctgg cgcacgaata cggggccagc ctgggattct cggatggggt taatcatctg
     3961 tttgagaggc tgtatctggg cggagagttg agtaatgatg aggccgccgc cttaaagaga
     4021 gagataatcc tgtatcaggg ggctggggtg attgacagcg gctatatgct gggcgatttg
     4081 agcatattgg gccaggcctt ctcttctgat tattccggaa catcccgtaa aggctctaag
     4141 gttaaggcta attcttacag cgccgaaacg aagaatgccg ccgctactgc ttatagcgcc
     4201 gagtttgaga cagcggtgaa taccttttat agcgactggc aggcttctgc ccatagcgac
     4261 gacatcaaca ccctgatctt aaaacccatt tacggcatag acctttctaa cggcctggat
     4321 gacagcgata aaaccgcttt tgggaataat acggctcccc agtataatcc gctttacaat
     4381 aaagatggca gtctgaaaaa cagcagcgag attcaggcta cggtggattt cttcgccgcg
     4441 gtaacggtct tctatcggga gtgggaggcg tcttccaaga gggatgacat aaatacctac
     4501 atcctgcttc ccgcctacga tgtggatttc tcggactatg agattgacct gtcggacctg
     4561 accgccttgg gcgatgatga tgcctctacc gactacaatc cgctgtataa tgaggatacc
     4621 tcgcttaaga gcgatagcga tattgccgcg gatatggact tttatgaaga ggcagttgat
     4681 tactataatg cctatctatc ctccaataca tctaaagttg atgaggttca taaggccttt
     4741 aaacatccca aggattccag caaatactta gatttaagcg atggcattaa tggcgatgat
     4801 ttgtacatct taggttatta cgacgccacc accaataccg gctacggcct gatctacgcg
     4861 g
//
LOCUS       DATDUB010000177         4790 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1322031, whole genome shotgun sequence.
ACCESSION   DATDUB010000177 DATDUB010000000
VERSION     DATDUB010000177.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 4790)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4790)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4790
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1322031"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            62..253
                     /locus_tag="VJA84_03535"
     CDS             62..253
                     /locus_tag="VJA84_03535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41230.1"
                     /translation="MIKHIFRISFAVILMIIGLAGLVLPLVPGLLLLFLGWALLIDRN
                     PKVLFNELMAKIKERRKKC"
     gene            247..2589
                     /locus_tag="VJA84_03540"
     CDS             247..2589
                     /locus_tag="VJA84_03540"
                     /inference="COORDINATES: protein motif:HMM:NF024371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3857 domain-containing protein"
                     /protein_id="HLD41231.1"
                     /translation="MLRRIIGLLIIAVLALGCVQESPSYLAKQGEYFYKKAIASYERL
                     VKKEKRNVVQRIALARLYLNRGDFEAAIETLKGQEDKTARQILGAAFYKAGDYTQALG
                     VFERAGKISEDEYLYYYGLTCQRQNLYEKALELFGRIKGKEYSALAGERVSSIQGLSL
                     GGLDISGQLKEKIEEATQEKYPLAGAVMILVDEHVKLSPDNTLVSDARYLIKILNERG
                     KKDFAEVVIGYDSTYEKVELEYARTVKPSGEVIAAGEKDIRDVSRYMNFPLYSNARAR
                     IISMPEISEGALIDYRVRTIQHQLINKEDFDLAYSLKENEPVLQGRFSLDLPKGRDLK
                     IKVLNPGYNPQNIDLAPKISETASERNYLWEFRDIPQIELEPDMPPMAEIDPIILMST
                     FDSWDEIYKWWWDLTKERISADSAINGKTKELVKGKNTPEEKIRAIYNYCLQEVRYVG
                     VEYGQAGYQPHPAPEIFKNKYGDCKDKAILFIAMLKSAGIEGYPVLIGTRGTPATAKD
                     FPALNFNHCIAAVELNQKTVFLDITAEVCSFGDLPADDQERTVLLFKKDGYELIDTPL
                     VLPRENLIRYRTEMILGRDETVSAKRTVSGLGQFDQAQRFWLRYTPPNLIEESLKQKV
                     QSLVTSGDLISYKYENADNLDLPIKLAYEFKGKNFLSRAGQARILPQFTKIDTSSSAK
                     ASRIYPLELGQPSVNEAVFSIRLPVNFKIKYLPESRALTSPWIDYAVDYKLKGGILTV
                     SQNQGLKKRQAAVREYPEFKKFLEDAAILLDEHIILEKKS"
     gene            2721..3827
                     /locus_tag="VJA84_03545"
     CDS             2721..3827
                     /locus_tag="VJA84_03545"
                     /inference="COORDINATES: protein motif:HMM:NF013594.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HLD41232.1"
                     /translation="MQTSIEAKKYHRIKNRLFVINIVFSVLVLLAFILSGFSSFLKSA
                     LSGSIPNPLLLKGMFIIVLSSIFYVLGFPLEFYEGFVLERRFKLSNQGLSGYLKDNLK
                     KSLLSLVIGLIAIEVLYLFLACFGRIWWILAAIGWFLLTVILTRITPSVFIPLFYKYL
                     PLKDEELRRKIREMFAQTQTPLKDVYMIDFSAKTKKLNAAVAGFGKSRRVILTDNLLA
                     ELSHDEILSIVAHELGHYKNKDTIKIIVFSAVITAILFFLSDIILRRSFHYFNYSSIA
                     DIAGFPLFCLVMLVLGLFSLPLQNGFIRALETTADLYSLKLTQKPEVFVSMMEKLARK
                     NLADVQPGEFVEFMLYTHPPIGKRIKLAQGFIKQ"
     gene            3824..>4790
                     /locus_tag="VJA84_03550"
     CDS             3824..>4790
                     /locus_tag="VJA84_03550"
                     /inference="COORDINATES: protein motif:HMM:NF018894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035438 - cyclic-di-GMP binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HLD41233.1"
                     /translation="MRKVATENNQREFIRLDSVFPVEFQFLSSGGKLEGIAYHGFTSN
                     ISKGGLCLELFKAESEMLAVLNKEKDVKLGLKIHIPVGRPAIAASGIVSWVKKSSSHH
                     SQVLIGLRYEDIQAKDLKRIMRVTYAKAFFPRIALAGILVLLLGLVAVSWNNFRLALA
                     NKKLIEEVVGVLKDSQTSRQELQKIRKEKGSLEERLLHAQDKIQDGQSRLSQKAEELK
                     LIHKDNIEELKAKEAEIERFKAMIKVLEQDSSGIMNKIGDLAVKEEKAQIELSRIKEK
                     KVILEKANFEKMYQWVQLHQNPRTGLIESFEGDGELSGVAFTYDQA"
BASE COUNT         1265 a         1039 c         1282 g         1204 t
ORIGIN      
        1 ctgctcaaac acagctctgc cacccgcacc gatagttata ttgtggggag ttttgagaaa
       61 gatgattaaa cacatattcc ggattagctt tgcggttatt ttgatgatta tcggtctggc
      121 cgggctggtc ctgcctttag tccccgggct attactgctt tttttaggct gggcgctttt
      181 gatagaccgt aaccctaagg ttctttttaa tgagcttatg gctaaaataa aggagcgcag
      241 aaagaaatgt taagaagaat aatcggattg cttattatcg ctgtcctggc tttgggctgt
      301 gtccaggaaa gcccgtctta cttagctaag cagggcgagt atttctacaa aaaggctata
      361 gcctcttacg agcggctggt gaagaaagag aaaaggaatg ttgtccaaag aatagcgctg
      421 gccaggcttt atttgaaccg gggtgatttt gaggcggcaa tagaaacctt gaaaggccag
      481 gaggacaaaa ctgcccggca gattttgggg gcggcctttt ataaggccgg ggattatacc
      541 caggccttgg gcgtctttga aagggcggga aagatcagcg aggatgagta tctttattac
      601 tacgggctta cctgtcagag gcagaatctt tatgaaaagg ccctggagtt attcggccgg
      661 ataaagggca aggaatattc agctttggcc ggagagaggg tgtcctctat ccagggcttg
      721 agcctgggag gcctggatat cagcggccaa ctgaaagaga agattgaaga ggccacccag
      781 gaaaaatacc cgctggccgg ggcggtaatg attctggtgg atgaacatgt gaagctgtcc
      841 ccggacaata ccctggtaag tgatgcccga tatcttatta agattttaaa tgagcggggg
      901 aaaaaggatt ttgccgaggt ggtcatcggc tatgattcca cttacgaaaa ggtggagctg
      961 gaatacgccc ggaccgttaa gccgtccgga gaggtgatcg cggccgggga aaaggacatc
     1021 cgggatgtct cgcgctatat gaatttcccg ctttattcca atgcccgggc caggattatc
     1081 tctatgcccg agatcagcga gggggcgctc attgattaca gggtgcgcac catccagcac
     1141 cagctgatta acaaggagga ctttgacctg gcctacagcc tcaaggagaa cgagcctgtc
     1201 cttcaaggga ggttttcttt agatctgcct aaaggccggg atttaaagat caaggtctta
     1261 aatccgggat ataatcccca aaacatagac ctggcgccaa aaatcagtga aaccgcctcg
     1321 gagaggaatt acctttggga attcagagac atcccccaga tagaactgga gccggatatg
     1381 ccgccgatgg cggaaattga cccgattatc ctgatgtcca cctttgattc ctgggatgag
     1441 atctataagt ggtggtggga tttaaccaaa gagcggatat ccgccgatag cgccattaac
     1501 gggaaaacca aagagttggt taagggcaaa aatacccccg aagaaaagat ccgggccatt
     1561 tataactatt gcctgcaaga ggtccgctat gtgggggtgg aatacggaca ggcaggctat
     1621 cagccgcacc cggctccaga aatattcaag aataaatacg gcgactgcaa ggataaggcc
     1681 atactcttta tcgccatgct taagtccgcc gggattgagg gttatccggt tctaatcggc
     1741 acccggggaa cgccggccac cgctaaagac ttcccggcgc tgaattttaa ccactgcatt
     1801 gccgcggtag agcttaatca aaagaccgtg ttcttggaca ttaccgccga ggtctgttct
     1861 ttcggcgacc tgcccgcgga tgaccaggag aggacggtct tattgtttaa gaaagacggc
     1921 tatgaattga tagacacccc attggttctg ccgcgggaga atctgatccg ttatcgcacg
     1981 gagatgattt tgggccggga tgaaacggtg tcagccaaga ggacggtttc cgggctgggg
     2041 cagtttgacc aggcccagag gttttggcta agatataccc cgcctaatct tattgaagaa
     2101 agcctgaaac aaaaggtgca gtctttggtt acctccgggg acttaatcag ttataagtat
     2161 gaaaacgcgg acaacctgga tctgcccata aaattggcgt atgaatttaa ggggaagaat
     2221 ttcctttccc gcgccgggca ggccaggata ctgccccagt ttaccaagat agacacctca
     2281 tccagcgcca aggccagccg gatttatccc ctggaattgg gccagcccag cgttaatgaa
     2341 gcggtcttta gtattcgcct gccggtgaat ttcaagatta aatatctgcc tgaaagccgg
     2401 gccttgacta gcccctggat agactacgcg gtggattata aattaaaagg gggcatcttg
     2461 acggtttccc agaatcaggg cttaaaaaag aggcaggcag ctgtccggga gtatccggaa
     2521 ttcaagaaat tcctggagga cgcggccatt cttttggatg agcatataat tttagagaaa
     2581 aagtcataga tgttcaaaca atcgtcattg cgagccccga aggggcgaag caatctttca
     2641 gatggagatt gcttcgtcgc gtagtttaca ctgagcgaag cgaatgtgct cctcgcaatg
     2701 acaattcgta tgtaataatt atgcagacct ctattgaagc caagaaatat caccggataa
     2761 agaaccggct gtttgtcata aacattgttt tttctgtgct ggttctattg gcgtttattt
     2821 taagcggttt ttcctcgttt ctgaaatcag ctttaagcgg gtctattccc aatccgctat
     2881 tgcttaaggg gatgtttatt attgtccttt cgtctatttt ttatgtcttg ggttttcccc
     2941 tggagtttta tgaaggcttt gtcctggagc gccgttttaa gctctccaat caaggcttaa
     3001 gcggttatct caaggacaac ctcaagaaat ccctgctttc cttagttatt ggtctgattg
     3061 ccatagaggt tttgtatctg tttttagcct gctttggccg gatctggtgg atattggcgg
     3121 caatcggctg gtttctcctc acggttatcc tcaccagaat tacccccagt gtctttatcc
     3181 cgctgtttta taaatatctc cccctgaaag acgaagagtt gaggagaaag atcagggaga
     3241 tgtttgccca aacccaaacc cccttaaaag atgtctatat gattgatttt tccgccaaga
     3301 ctaagaagct gaatgccgcg gtggccggct ttggcaagag ccgccgggtg attttgaccg
     3361 ataacctgtt ggcggaattg tcccacgatg agatcttaag catagttgcc catgagctgg
     3421 gccattataa aaataaggac actattaaga taattgtctt tagcgccgtg attacggcaa
     3481 tcttattttt cttaagcgat ataatcttaa ggaggagctt ccattatttt aattattcct
     3541 ccatagccga tattgccggg tttcccttgt tttgcctggt aatgctggtc ctggggcttt
     3601 tcagcctgcc tttacaaaac gggtttatcc gggctttaga aaccacggct gatctgtata
     3661 gtcttaaact gacccaaaag ccggaagtct ttgtctcaat gatggaaaag ctggcccgga
     3721 aaaacctggc ggatgtccag cccggggagt ttgtggagtt tatgctctat acacatccgc
     3781 caatcggcaa gcggattaag ctggcccagg ggtttataaa acaatgagaa aagtcgccac
     3841 ggaaaataat cagcgcgagt ttatccgcct ggattcggtc tttccggtgg agtttcaatt
     3901 tttaagctcc ggcggcaaat tagagggaat tgcttatcac ggttttacct ctaacatcag
     3961 taagggcggg ctttgcctgg agttgtttaa ggccgaaagc gaaatgttgg cagtcctcaa
     4021 taaagaaaag gatgtgaaat taggcctaaa gatccatatc ccggtgggcc ggccggctat
     4081 cgcggcctcc ggaattgtca gctgggtcaa gaagtcttcc agccatcaca gccaggtttt
     4141 gatcgggtta aggtatgagg atatccaggc caaagattta aaacggatta tgcgggtgac
     4201 ttatgccaag gcctttttcc cccggatagc cctggccggg atactggtcc ttcttttagg
     4261 gctggtcgcg gtgagctgga ataatttccg gctggccttg gccaataaaa aattgataga
     4321 agaggtggtc ggggttttaa aggattctca aaccagccgc caggaactgc aaaagatacg
     4381 caaggagaag ggttccctag aggaaagact actccatgcc caggataaga tccaggacgg
     4441 acagtcccgg ttaagccaaa aggccgagga gttaaaactg atccataagg ataatataga
     4501 agagctgaag gccaaagagg cggagattga aagatttaag gcgatgatca aggttctgga
     4561 gcaggacagc tccgggataa tgaataagat cggggattta gccgtgaagg aagaaaaggc
     4621 ccagatagaa ttaagccgga tcaaggagaa aaaggtgatt ttggaaaagg ccaattttga
     4681 gaagatgtat cagtgggtcc aactgcacca gaacccgcgc acagggttga ttgaaagctt
     4741 tgaaggcgac ggggaattaa gcggggtcgc cttcacttac gaccaggccc
//
LOCUS       DATDUB010000178         3185 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_307415, whole genome shotgun sequence.
ACCESSION   DATDUB010000178 DATDUB010000000
VERSION     DATDUB010000178.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3185)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3185)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3185
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_307415"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(20..1792)
                     /locus_tag="VJA84_03555"
     CDS             complement(20..1792)
                     /locus_tag="VJA84_03555"
                     /inference="COORDINATES: protein motif:HMM:NF024973.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BatD family protein"
                     /protein_id="HLD41234.1"
                     /translation="MLSLSLSSFGYAKEVGFEIGVEANRVSLGQSLELNLTFEGTQNI
                     PALELSNLEGFQARYLGPSTRMSIVNGQVSSSITHIYSLLPVKAGVFKIGPLRFDYQG
                     DTYISNLIEVEVIPSGQPLPRASGEGQPQGLARDINERVFLVLQPQKTRVYLNEVIPL
                     KIKLYVNGLSLRDIEYPQFNHEGLSIGKFSQPKQYRENLGGVNYEVVEFNTQIFALRT
                     GELRIGPASLRCNLLAAKQGRRKGWDDFFEDFFDSYQNYPLNPQSADMPITALPLPEE
                     GRPADFSGAVGAFDFQLEAGPRELKAGDPVTLKGIIRGRGNFSTLTIPRMQSSPDFKV
                     YEPQANQKEDDIRTFEQVVMPLSDKVQEIPRIILNFFNPDSDRYERVGRGPFPITVSK
                     PQEQEELKIVESHPVVPGFSEEEKLGRDIIYIKTGLGRLKRQGDYLYRDKAFLALQSA
                     PFFSFLFISLYYSRKRRLNSDLRYSRQLNAPKKARSGLKKARGLLAKDDKPGFYDAVF
                     ETLQEYLGDKFHLPSKGITVSITDEILKDKPGIDKEALAKLKDIFQACDMARYAASES
                     GKEDIALTLRKLEEVIGYFQREKV"
     gene            complement(1852..2679)
                     /locus_tag="VJA84_03560"
     CDS             complement(1852..2679)
                     /locus_tag="VJA84_03560"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HLD41235.1"
                     /translation="MSLKVFLLIVLILSPGLADAKDDAASLTAKANRLYKEGKYDQAL
                     GLYNRALISRPDSALLNFNIGAANYKKGDFENALKSFEKAALSEDKLLESKANYNSGN
                     SQYKSAKLKENIDLEAAVNLMRQSLEHYKRAMGLNNKDEDAKINHDLAEKELKALLEK
                     LKQQPRDKQPSQNKGQCPNPQADSESKDKENGESQKQNSQTEKKEAQKAQGAEQKEAR
                     VEDKQPEQALKGAEEKPKEMSEQEARMLLEGRRQDESLGGQVRDGQKAEWEAVEKDW"
     gene            complement(2769..>3185)
                     /locus_tag="VJA84_03565"
     CDS             complement(2769..>3185)
                     /locus_tag="VJA84_03565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41236.1"
                     /translation="DGEDHKGNALSAAEEAKKEGIAVFCVGIGSREGELIPLKAEDGQ
                     ARFLKDRQGNVVKSRLDESILQKIALATGGSYVRSTGAEFGLELLYRERLSKLEKREL
                     EGKLAKHYEERFQIPLALAFLLLLVELLISERKKGK"
BASE COUNT          753 a          888 c          657 g          887 t
ORIGIN      
        1 ccgccaataa ctgttactct catacctttt ccctctggaa atatcctatc acttcctcta
       61 acttgcgcaa agttaaggca atgtcctctt tgccggattc cgaagcggca taacgagcca
      121 tatcgcaggc ctgaaaaata tccttaagct tggctaacgc ctctttatca atacccggtt
      181 tgtccttcaa tatctcatct gtaatgctta cggttatccc tttagacggc agatgaaact
      241 tatcccccag atactcctgc aaagtctcaa atacggcgtc ataaaatccc ggtttatcat
      301 ctttggccaa cagccctcgc gccttcttaa gcccgctcct ggccttctta ggggcgttaa
      361 gctgacggct atagcgaaga tccgagttta gtcttctctt gcgcgaataa tacagggata
      421 taaacaggaa actaaaaaac ggcgccgact gcagggctaa aaaagcctta tcgcggtaaa
      481 gataatcccc ctgccgcttt agcctgccta agccggtctt gatatatata atatcccgtc
      541 ccaatttttc ttcttccgaa aatccgggga caacaggatg agattccact attttaagtt
      601 cttcctgctc ctgcggctta gacaccgtta taggaaacgg ccccctgccg accctttcat
      661 atctatcgct atcgggatta aaaaaattaa ggattatccg cgggatttct tggactttat
      721 cgcttaaggg cataaccacc tgctcaaaag tccggatgtc atcttccttt tggttggcct
      781 ggggctcata aaccttaaag tcagggctgg attgcatccg cgggattgtc agggtggaga
      841 aatttccccg gccccggatt atccctttta aagtaaccgg gtccccggcc tttagctccc
      901 ttggcccggc ctcaagctga aaatcaaacg cccccactgc ccccgagaaa tccgccggcc
      961 tgccttcttc aggtaaaggc agggctgtta tcggcatatc cgcggattgc ggattcaagg
     1021 gatagttctg ataactgtca aagaaatcct caaaaaaatc atcccatccc tttcttcggc
     1081 cttgtttagc cgccaggaga ttacagcgca gtgaagccgg gcctatcctt aattctcctg
     1141 tcctcaaggc gaagatttgg gtgttaaatt ccaccacctc ataattgacc ccgcccagat
     1201 tttcccggta ttgcttaggc tggctgaatt ttccgatgga aaggccttca tggttaaact
     1261 ggggatactc aatatccctt aaggataaac cattcacata caacttaatc tttaagggga
     1321 tcacctcatt taaatagacc ctggtcttct ggggctggag gaccagaaaa acccgctcgt
     1381 ttatatcccg cgccaggcct tgcggctgac cttccccaga ggcccgcggc aaaggctgtc
     1441 ctgacggaat gacctccacc tcaataagat tagatatata ggtatcgccc tgataatcaa
     1501 accttaacgg cccgatctta aagaccccgg ccttaacagg cagaaggcta tagatatggg
     1561 tgatagagct ggagacctgg ccattgacta tagacatccg ggtagatggg cccagatacc
     1621 gggcctggaa accttcaaga ttagacaact ccagcgccgg gatattctgg gtcccctcaa
     1681 aggtaaggtt aagctctaaa ctctgcccca ggctgacccg attcgcctcc accccaatct
     1741 caaaccccac ctccttagca taaccaaaag aagagagcga taaagatagc ataaaaataa
     1801 tccatccaag gaaaattttg acttttgact tttgactttt gactttattt atcaccagtc
     1861 cttctccact gcttcccatt cagccttttg gccatcccta acctgtccgc ccaggctctc
     1921 atcctgcctc cggccctcta aaagcatccg ggcctcttgt tcggacatct ctttgggctt
     1981 ttcttcggcg cctttcaagg cctgttccgg ttgtttatct tctacccgcg cctctttttg
     2041 ctctgccccc tgggcctttt gggcctcttt cttttcagtt tgggaatttt gcttctggct
     2101 ttccccgttt tctttatctt tagattcaga atctgcttgc gggtttgggc attggccttt
     2161 attttgagaa ggctgtttat cccgcggctg ttgttttaat ttctcaagta aggccttcaa
     2221 ttccttctct gccaggtcat ggtttatttt agcatcttcg tccttattat tcaatcccat
     2281 agctcgctta taatgctcca gggactggcg catcaggttg accgcggcct ctaaatcaat
     2341 attctccttg agtttggcgg acttgtattg ggaattcccg gaattataat tggccttgga
     2401 ctctaaaagc ttgtcttcgc taagcgcggc cttctcaaaa gacttgagcg cattttcaaa
     2461 atcgcctttt ttataatttg ccgctccgat gttaaaatta aggagcgctg aatccggcct
     2521 ggaaatcaag gcccggttat acaggcccaa ggcctgatca tattttccct ctttatacag
     2581 cctattggcc ttcgcggtca gggaagcggc atcatctttg gcgtccgcca ggcccggaga
     2641 aagaattaaa acaattaata aaaatacctt taaagacatg tcattgcgag cgaagcgaag
     2701 caatctttcg gaaggagatt gcttcggtcg ctttgctccc tcgcaatgac acattagaat
     2761 ataatacatt attttccctt ttttctttca cttatcaaaa gctcaacgag gagcaataaa
     2821 aaagccaggg ccaaaggtat ctgaaacctc tcctcataat gcttagccag ctttccctcc
     2881 agttcccttt tctctaactt agacagcctc tctcggtata acagctcaag gccaaactcc
     2941 gcgccggtag agcggacata actgcccccc gtggccaggg ctatcttctg caggatagac
     3001 tcatccagcc ggctcttgac cacattgccc tgccgatcct ttagaaaccg ggcctgcccg
     3061 tcttcagcct taagcgggat caactcccct tcccggctgc ctataccgac gcaaaatacg
     3121 gctattcctt ctttcttggc ctcttcggcc gcggaaaggg cgttgccttt atggtcctca
     3181 ccgtc
//
LOCUS       DATDUB010000179         2230 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1322859, whole genome shotgun sequence.
ACCESSION   DATDUB010000179 DATDUB010000000
VERSION     DATDUB010000179.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2230)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2230)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2230
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1322859"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..346
                     /locus_tag="VJA84_03570"
     CDS             <1..346
                     /locus_tag="VJA84_03570"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009271570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0034023 - 5-(carboxyamino)imidazole
                     ribonucleotide mutase activity [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="AIR carboxylase family protein"
                     /protein_id="HLD41237.1"
                     /translation="KFAKDARKNGIKAIIAGAGGAAALAGVIAAHTTLPVIGVPIETS
                     SLNGLDSLLSTVQMPGGVPVASMAIGRAGAKNAAIFALEILGASDTGMEKKLEAYKKS
                     LAKKVKEIKLNV"
     gene            359..1417
                     /locus_tag="VJA84_03575"
     CDS             359..1417
                     /locus_tag="VJA84_03575"
                     /EC_number="2.7.7.87"
                     /inference="COORDINATES: protein motif:HMM:TIGR00057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0061710 - L-threonylcarbamoyladenylate
                     synthase [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-threonylcarbamoyladenylate synthase"
                     /protein_id="HLD41238.1"
                     /translation="MSTEVIKISPDNPDFEAVDKAASFIRQGKLVAIPTETVYGIAAD
                     YAHPQAVKRLYAIKNRPLDKPFTVAIAFQDSMERLAVGLGPVVYKLADRFWPGPLTMV
                     LKALDNKTIGLRMPSNRVALQVIEASGVDVVLPSANLSGDRPAVSAAEVLSALDGKID
                     LLLDAGKVELGVESTIVDLTVNPFRILRDGALKKEELEKTALLKRVLFVCTGNSCRSV
                     MAEGLLKKALSKAGRSDVEVFSCGVSAFNGLMPTPETLDLLAKEGVSIPDKRTRRLDK
                     TLLKSSDIILAMEKHHEERILEFVPEVKNRVFLLKEFVKMQDAILDVVDPIGQGSDFY
                     ENTFYAIKEAVNRIVEII"
     gene            1496..1942
                     /gene="rpiB"
                     /locus_tag="VJA84_03580"
     CDS             1496..1942
                     /gene="rpiB"
                     /locus_tag="VJA84_03580"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014196954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004751 - ribose-5-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0009052 - pentose-phosphate shunt,
                     non-oxidative branch [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose 5-phosphate isomerase B"
                     /protein_id="HLD41239.1"
                     /translation="MERIVIGSDHGGFRLKEKLKAFLRKKGYRIEDVGCFNEESCDYP
                     EYAYEAAKRIAKGGFKRGILICKSGIGNSIAANKVKGIRAALCYNLQAARLSRRHNDA
                     NLLVLGSLFVNDALAKRMAGIWLKTEFEGGRHQRRLNKIKDIEDKV"
     gene            1939..>2230
                     /locus_tag="VJA84_03585"
     CDS             1939..>2230
                     /locus_tag="VJA84_03585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002507071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine hydroxymethyltransferase"
                     /protein_id="HLD41240.1"
                     /translation="MSYLKKIDPEIYKIIGNEVKRQENNLELIASENFTSLAVLEAQG
                     SVLTNKYAEGYPHHRWYGGCENVDQAEGLAIERAKELFKAEHVNVQAHSGSQA"
BASE COUNT          571 a          456 c          664 g          539 t
ORIGIN      
        1 taagtttgcc aaggatgcgc gcaagaacgg gatcaaggca attattgccg gggccggagg
       61 ggcggcggcg ctggccgggg tgattgccgc gcatactact ttgccggtta tcggggtgcc
      121 tattgagacc tccagcttaa acggcctgga ttcgcttttg tccaccgtgc agatgcccgg
      181 cggcgttcct gtggcctcaa tggccatagg gcgggccggg gccaaaaacg cggccatctt
      241 tgccctggag atattaggcg ccagcgatac gggtatggaa aagaagttag aggcctacaa
      301 aaaatccctg gccaagaagg tcaaagagat taagttgaat gtataaaaag ctgaagatat
      361 gtctactgaa gtgattaaaa taagtcctga caatcccgac tttgaagccg tggataaggc
      421 ggcaagcttt atccggcagg gaaagctggt ggctattcct acggagacgg tttatgggat
      481 tgccgcggat tatgctcatc ctcaagcggt gaaaaggttg tatgcgataa agaatcgccc
      541 tttggataag ccttttaccg tggctatcgc ctttcaggat tcaatggagc ggctggctgt
      601 cgggcttggc cctgtggttt ataaactggc ggacagattt tggcccgggc ccttgactat
      661 ggttttaaag gctctggata ataagaccat tggcctgcgt atgcccagca atcgggttgc
      721 cttgcaggtt attgaggcct ctggtgtgga tgtggtcctg ccttcagcca atctctccgg
      781 agaccgtccg gcagtttcag cggctgaagt attgtccgcc ttagatggta agattgacct
      841 tttgctggac gcgggtaagg tggagctggg agtggagtca acgatagtgg atttaaccgt
      901 taacccattt aggatattgc gcgatggcgc gcttaaaaaa gaggaattgg aaaagacggc
      961 tttgcttaag agggtgctct ttgtctgcac cgggaattcc tgccgttcag ttatggccga
     1021 aggcctgctg aagaaggccc tgtccaaggc cgggcgctct gatgttgagg ttttttcctg
     1081 cggggtaagc gcctttaacg gccttatgcc tacacccgaa acattggact tattggctaa
     1141 agagggcgtg tctattccgg ataaacgcac ccggcgctta gataagaccc tcttgaagtc
     1201 ctcggatata atcctggcga tggagaaaca tcacgaagag cggatattgg aatttgtccc
     1261 ggaggtaaag aaccgggtat ttttgcttaa ggaattcgtg aagatgcaag acgctatcct
     1321 tgatgtggtg gaccctatcg gccaaggaag cgatttttac gaaaatactt tttatgccat
     1381 aaaagaagcg gtaaacagaa tagtggagat aatatagtag taagagagta agagagcggg
     1441 aaagttctga tatgtagggg cagacctatg tgtctgccca gagcagggag agaaagtgga
     1501 aagaatagta atcggcagtg atcacggggg ttttcggctc aaggagaaac ttaaggcctt
     1561 tttgcggaaa aaaggatacc ggattgagga tgtgggctgt tttaacgagg agtcctgtga
     1621 ttatccggaa tacgcctatg aggcggcaaa aagaatcgct aaaggcgggt ttaagcgggg
     1681 gattttaatc tgtaaaagcg ggatcggcaa ttccattgcc gccaataagg ttaaagggat
     1741 acgggcggcc ttgtgttata atctgcaggc ggcaagattg tcccgccggc ataatgacgc
     1801 caatcttttg gttttagggt cattgttcgt taatgatgcc cttgctaaac ggatggccgg
     1861 catttggcta aagactgaat ttgagggcgg aaggcaccag cgccgattga ataagatcaa
     1921 agatatagag gataaggtat gagttacttg aagaagattg accctgaaat atataaaata
     1981 attgggaatg aagttaaacg ccaggagaat aacctggagt tgattgcctc ggagaatttc
     2041 acctctttgg cggttttaga ggcccagggc tcggtcctga ctaataaata cgccgagggc
     2101 tatccccatc accgctggta tggcgggtgc gagaatgtgg atcaggccga aggcctggct
     2161 attgaacggg ccaaggagct ctttaaggcc gaacatgtca atgtccaggc ccattccgga
     2221 agccaggcca
//
LOCUS       DATDUB010000180         2993 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1138086, whole genome shotgun sequence.
ACCESSION   DATDUB010000180 DATDUB010000000
VERSION     DATDUB010000180.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2993)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2993)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2993
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1138086"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..554
                     /locus_tag="VJA84_03590"
     CDS             <1..554
                     /locus_tag="VJA84_03590"
                     /inference="COORDINATES: protein motif:HMM:NF014325.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="TrkA family potassium uptake protein"
                     /protein_id="HLD41241.1"
                     /translation="EIAKDLNTLVINGDGCDSKYLEEAGIVRADVLASVTGEDEDNLV
                     VCQLAKEKFKVSRTVARVNDPKNEPVFSCLGADVPIDATAILAKIIEEEVSFADFVNL
                     MSFKRGKLAIVRVDLPPDSPVINKQLQELQLPPDSVLVSIIRGDQVIVPKGNTTLLIG
                     DDLIALTLLQNEQQLLNYLIGKL"
     gene            693..2195
                     /locus_tag="VJA84_03595"
     CDS             693..2195
                     /locus_tag="VJA84_03595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013782401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015079 - potassium ion transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TrkH family potassium uptake protein"
                     /protein_id="HLD41242.1"
                     /translation="MVLKPNLEDLRAIGYYLGKIIIGLGMTMLIPFVSAFIFREFNPL
                     YDFLISFLICLISGNALILLCKTDKDLNWVGGMVVVALAWLAAAVLGAVPFYLSGHWV
                     FFLDCVFDSMSGFATTGLVLVQDLDHIARSVNLWRHLIMFIGGQGVVVVALSFLVRGS
                     AGSFRMYVGEARDEKVLPNVVETARFIWLVSIVYLVLGTVVLAIVGRCEGMSLVNSFF
                     HGACVFMAAFDTGGFAPQSQNILYYHSLTYEIVTIIIMILGSLNFKLHYTIWLRRKKE
                     IVTNIETRTFFMTIMLTFFLTAVGLAKLGVYPDALGLFRKGFYQLISGHTGTGYQTIY
                     ARQFIHEWGALALFSLTIAMALGGCVCSTTGGIKMLRIGVVFKALYNDIKRVMLPEAG
                     VFVEKYHHIKDAVMEEHQVRSAVLIFLCYLGLYALGGVIGMFFGYPALDSLFESTSAA
                     ANVGLTCGITQAAMPALLKVVYILQMWIGRLEFMSVFVLIGFFAAFVRGK"
     gene            2291..2695
                     /locus_tag="VJA84_03600"
     CDS             2291..2695
                     /locus_tag="VJA84_03600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HLD41243.1"
                     /translation="MIERAKELDGQEVLYEGELIGEVMTRGEHSWLNLNDGQNAIGVW
                     AGNHFLNLISFAGDYTHKGDWLQVRGVFSRACQVHGADLDIHAQSINLIRRGRIVRHQ
                     VVPFKLRQAIILSGVFLCLLIGQLLSRKLKKK"
     gene            2647..>2993
                     /locus_tag="VJA84_03605"
     CDS             2647..>2993
                     /locus_tag="VJA84_03605"
                     /inference="COORDINATES: protein motif:HMM:NF014909.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HLD41244.1"
                     /translation="MSFDWTAIEQEAQKEINQASFGEAIEALRIKYLGRQGLLAEITG
                     SISSLSASERPEFGKKANYLKNKLTQLLEERVSQLKENESQGLEAFDITLPGEPIPQT
                     GTLHPITQTIREIA"
BASE COUNT          679 a          635 c          789 g          890 t
ORIGIN      
        1 aggaaatagc caaggatctt aataccctgg taattaacgg cgatggatgc gattctaagt
       61 atctggaaga ggcgggaatc gtccgggcgg atgttttggc cagcgttacc ggcgaagatg
      121 aagacaactt agtggtctgc cagctggcta aggagaaatt taaggtttcc cgcaccgtgg
      181 ccagggtcaa cgaccccaag aatgagccgg tattctcttg tctgggcgcg gatgtgccca
      241 ttgacgctac ggctatcctg gccaaaatta tcgaagaaga ggtttctttt gccgactttg
      301 tgaatctgat gagttttaag cgcggtaagc tggccattgt ccgggtggac ctgccgccgg
      361 attctccggt aatcaacaaa cagcttcagg aattgcaatt gccgccggat tcggtgctgg
      421 tctcaattat ccggggcgac caagtgattg ttcctaaagg gaataccact cttttaatcg
      481 gggatgacct tatcgccctg acccttttgc agaatgaaca gcaacttcta aattacctta
      541 tcggtaagct atgaattggc gaaggttatg aaacttcaat acctatcctc tccattaatc
      601 caatccagcc tgggaatcct gattgaggtt gcctacggcc tcgcgataat tttatccggc
      661 acaggaatta tctatttagt tttgatatta aaatggtcct caagccgaat ttagaagacc
      721 ttagggcaat aggatattat ttaggtaaaa tcatcatcgg cctgggaatg actatgctca
      781 ttccttttgt ctcggccttt attttccggg agtttaaccc cctgtatgat tttttaatca
      841 gttttctgat ttgcctgatt tccggcaatg ccctgatttt actctgtaaa accgacaagg
      901 atttaaattg ggtcggggga atggtggtag tggccctggc ctggctggcg gcggcggtcc
      961 tgggagcggt ccctttttat ctgagtggac attgggtttt tttcttagac tgtgtttttg
     1021 actcaatgag cggctttgcc actaccgggc tggttttggt ccaggacctt gaccatattg
     1081 ccaggagcgt caatctttgg cgccatctga ttatgtttat cggcggccag ggggtggtgg
     1141 tggtggcatt atcgtttctg gtgcgcggtt cggccggatc cttcaggatg tatgtgggtg
     1201 aggcccgcga cgaaaaggtg cttcccaatg tggtggaaac tgcccgtttc atctggttgg
     1261 tcagcatagt gtatctggta ttaggcacag ttgttctggc tattgtcggc agatgcgaag
     1321 ggatgtcctt ggtaaattcc tttttccacg gagcctgcgt atttatggcc gcttttgaca
     1381 ccggaggttt tgccccccaa tcccagaata tcctctatta tcacagcttg acttacgaaa
     1441 ttgtaactat tataattatg attttgggct cgcttaattt taaattgcat tataccatct
     1501 ggctacggcg taaaaaagaa atagtaacca acattgaaac ccgtaccttt tttatgacca
     1561 taatgctgac cttttttttg accgcggtgg gtttggccaa gcttggggtt tatccggatg
     1621 ccttaggttt gtttagaaaa ggattctacc agttgatttc cgggcatacc gggaccggct
     1681 atcaaactat ttatgcccgg cagtttatcc atgaatgggg tgctttagcc cttttctctt
     1741 taaccatagc tatggccttg ggcggatgcg tgtgttcaac taccggcggg ataaaaatgc
     1801 tcaggattgg cgtggttttt aaggccctgt ataatgatat taagcgggtg atgcttcctg
     1861 aggccggagt tttcgtcgag aagtatcatc atattaaaga tgcggttatg gaggagcacc
     1921 aggtgcgctc ggcagtcttg atatttctat gttacctggg gctctatgcc ttagggggag
     1981 ttatcgggat gtttttcggt tatccggccc tggattcttt gtttgagtct acttcagccg
     2041 cggccaatgt gggtctgacc tgcgggataa cccaggccgc gatgcccgcg ctcttaaagg
     2101 tggtctatat tttacagatg tggataggcc gtttagagtt tatgtcggtc tttgtcttga
     2161 tcggtttttt tgcggcgttt gtgcggggga aatgaataaa gtccacagtc ttttgttttt
     2221 tctgctgtca gctttctgtt gtcagctgtc ggctgtcagt tacgctcaga cggcggtttc
     2281 ctcgactgag ttgattgaac gggccaagga attggatggg caggaagtcc tttatgaggg
     2341 cgagttgatt ggcgaggtga tgaccagagg cgagcattcc tggcttaacc ttaatgacgg
     2401 acaaaatgcc atcggggtct gggccggaaa tcatttttta aatttaattt cctttgccgg
     2461 agattatacc cataagggag actggcttca ggtgaggggt gtatttagcc gggcttgtca
     2521 agtccacggg gcggatttgg atatccacgc ccaaagtatc aacctgatcc ggagaggaag
     2581 aatagtcaga caccaggtag ttccttttaa gctaaggcag gctataattt tatcgggagt
     2641 atttttatgt cttttgattg gacagctatt gagcaggaag ctcaaaaaga aataaaccag
     2701 gcctcattcg gtgaggctat tgaggccctg cggataaagt atctgggccg gcagggtttg
     2761 ctggctgaga ttaccggttc catctcttct ctttcagcct cagagcgtcc ggaatttgga
     2821 aaaaaagcca attatctcaa gaacaaactt acccaacttc ttgaggagag ggtttctcaa
     2881 ttaaaagaaa atgaatccca aggccttgag gcttttgata ttactttacc cggtgaacca
     2941 attccccaaa ccgggactct gcacccgatt acccagacta tccgggagat agc
//
LOCUS       DATDUB010000181         3443 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1797684, whole genome shotgun sequence.
ACCESSION   DATDUB010000181 DATDUB010000000
VERSION     DATDUB010000181.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3443)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3443)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3443
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1797684"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(116..391)
                     /locus_tag="VJA84_03610"
     CDS             complement(116..391)
                     /locus_tag="VJA84_03610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41245.1"
                     /translation="MKEVIPMQNTMKIAISIPKEDYYKIERIRKKLGFARSVFIDKAV
                     KFWIEHQERQQLIKRYKEGYKNNPEDMREIEAMEGLYADAFKEEGLK"
     gene            complement(423..1139)
                     /locus_tag="VJA84_03615"
     CDS             complement(423..1139)
                     /locus_tag="VJA84_03615"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HLD41246.1"
                     /translation="MNDTAVSFNNVSKRYFIGEHSIRTLRDDLSRWIGRLLNKGAESQ
                     KELWALKEVSFQIKNGESVGLVGPNGSGKTTIFKLISRISLPTRGKVGVNGKVGSLID
                     LNAGFHPELTGLENIYLNAAIRGMRRRDIKNKLEEILDFAGIARFKDTPVKHYSAGMK
                     VRLGFSVAASCPFDILLVDEVLAVGDADFQKKCIERIAEFQKKGKTILFVSHDMDKVN
                     QVCSRIIRLFQGKVTLNHAS"
     gene            complement(1136..1918)
                     /locus_tag="VJA84_03620"
     CDS             complement(1136..1918)
                     /locus_tag="VJA84_03620"
                     /inference="COORDINATES: protein motif:HMM:NF013245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HLD41247.1"
                     /translation="MLRLLKELIEYREVLFTLVIRDIKVRYKQTIVGAVWAILQPLFM
                     MWIFSIIFDKFTNLPSEGSRYSIFCLTALVPWTFFTNSINLAIPSLVDNESLITKIYF
                     PREFLPLSGICAAMADFFIAAIIYALILLWFKIKLTAFILMVIPLFFIQILFTLGLIF
                     FASALNVFYRDVKFIIPFVVQIGMFATPIVYSTVMISDKYKAIYMLNPLAGVIDGYRK
                     AILSGTMPNLHYITNAFWVSLIIFVLGYGYFKFVENSFADAI"
     gene            complement(2003..2995)
                     /locus_tag="VJA84_03625"
     CDS             complement(2003..2995)
                     /locus_tag="VJA84_03625"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025017.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HLD41248.1"
                     /translation="MDPYPLISIIIPVRPGASAKTAIDSIRKADYPLERIETILEEGL
                     NPSRQRNQGIKKASGEILFFLDDDSEITPGLFKETVKTYQAYPDAIGVGGPAVLYGNT
                     NLQKGVIAVLTSYLGVYKISARYAPAGQTRYTDENELISCNLSLKREIFRKNNGFNDK
                     LYPNEENELIQSLIKQGYRFIYNPDCQILRQADNEIEAFLRRIFNYGRGRMEQLFLRP
                     SKTSFFRLLPLGFLIYLSGLLFIPNPYLYLPFFGYLILIAVVSACASKKIAFGDNSMR
                     FSVALYTSLHHKKQLKIIPLLIALFLATHILYGLGEVYGIYTALKHKRNVLLRH"
     gene            complement(3064..3318)
                     /locus_tag="VJA84_03630"
     CDS             complement(3064..3318)
                     /locus_tag="VJA84_03630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41249.1"
                     /translation="MAEKVSKQGIKRKDGYLYFIDKSGDVSCARMARGGKKGGKPEKV
                     TKVGVKKESGYLYFLDKQGDVSRAKMAQGGKKKAKNKKKK"
BASE COUNT          893 a          827 c          766 g          957 t
ORIGIN      
        1 atctgggcaa cagttacggc attgcgcacc tcgtaggcct catctcttga caacaagaca
       61 accgggcgcg taccgatagg aggcggctgt ttagcccacc agacttcccc ccttttcact
      121 ttaatccctc ttccttaaac gcgtccgcgt aaaggccttc catcgcttct atttccctca
      181 tatcttcagg gttgttttta tagccttcct tatagcgttt gattaattgt tgacgctctt
      241 gatgctctat ccagaattta acggccttat ctataaaaac gctgcgcgcg aatcccaatt
      301 tcttgcggat tctctcaatc ttgtaataat cctcttttgg tatgctgatt gctatcttca
      361 tcgtattctg cataggtatt acctccttca taccttaagt ataacattat tcataactgt
      421 tgtcaagacg cgtggtttaa tgtgactttc ccctgaaaca ggcggattat ccttgagcaa
      481 acctgattga ctttatccat atcgtgggag acaaagagga tggttttgcc ttttttctgg
      541 aattccgcta tcctttctat gcactttttc tggaaatccg cgtcccccac ggccaggacc
      601 tcatccacca ggaggatgtc aaaagggcat gacgccgcta ccgagaaacc caggcgcacc
      661 ttcatccccg cggagtagtg cttgaccggg gtgtccttga agcgggcaat cccggcaaaa
      721 tccagtatct cttccagctt atttttgata tcccggcgcc gcatccctct gatggccgcg
      781 ttgagataga tattctccaa accggtcagt tccggatgaa aaccggcgtt taaatcaata
      841 agcgaaccca ccttgccatt cacacccact tttccccggg taggcaggct tatccgggag
      901 atgagcttaa atatggtggt ttttcctgat ccattcggcc caaccagacc tacgctttct
      961 ccattcttaa tctggaagct tacctcttta agcgcccaga gctctttttg gctctctgcg
     1021 cctttattga gcagtcttcc tatccagcgg cttaagtcat cgcgcagggt gcggatggaa
     1081 tgttcgccga taaaatagcg tttggagaca ttattgaagc taacggcagt gtcgttcata
     1141 tggcgtcagc gaaagagttt tccacgaatt tgaaatatcc gtagcccaaa acaaagatta
     1201 tcagggaaac ccaaaaggcg ttggtaatat aatgaagatt gggcatagtc ccggacaaga
     1261 tggccttgcg gtagccgtca atcacaccgg ctaaaggatt gagcatatag attgccttgt
     1321 atttgtcgga aatcatcacc gtggagtaaa ctatcggggt ggcaaacatc ccaatctgca
     1381 ccacaaaagg aatgataaac ttcacatccc ggtaaaagac attcagagcc gaggcaaaaa
     1441 agattaaccc taaggtaaat aatatctgga taaaaaatag cggtattacc attaaaataa
     1501 aggcggtgag ctttatttta aaccatagta atatgagcgc gtagataatt gccgcgataa
     1561 agaagtccgc cattgccgcg catatcccgg ataagggcag gaattcccgg gggaaataga
     1621 ttttagtgat caagctttca ttatccacca agctggggat agccaggttt atggagttag
     1681 taaagaatgt ccagggcacc agggcagtca ggcaaaatat ggaatatcgt gacccttcgc
     1741 tgggcagatt ggtgaactta tcaaagatga tggagaatat ccacatcatg aacaagggct
     1801 gtaagatagc ccagaccgcc ccgactatgg tctgcttgta gcgcacctta atgtcccgga
     1861 tcaccagtgt aaagaggacc tcgcggtatt caatcagttc tttaagcagt cttagcattt
     1921 ctccttcgct ctttaattat atttatctct ggtagagctt cgcagaatag tcctccgaag
     1981 ccatacaatc gtatatagca ttctaatggc gaaggaggac atttctttta tgtttcaaag
     2041 ccgtataaat cccatagacc tcacccaagc cgtagagaat atgggtggcc aggaaaaggg
     2101 cgattagcaa aggtattatt tttagctgct ttttatggtg tagggaagta taaagcgcca
     2161 ctgaaaatcg catagagtta tcgccgaagg cgattttctt ggaagcgcag gcgctgacta
     2221 cggctatcag gattaaatac ccgaagaagg gcagatataa ataaggattg ggaataaata
     2281 ataatccgga tagatagatc aggaaaccca ggggcaagag gcgaaagaag gaagtcttgg
     2341 acggccttaa aaacagctgt tccatccggc cccggccgta attgaatatc cgccttaaaa
     2401 acgcctcaat ctcattgtca gcctggcgca ggatttggca atcaggatta taaataaagc
     2461 ggtatccctg cttaatcaga gattggatta actcattctc ctcattagga tataatttat
     2521 cgttaaaccc gttatttttt ctgaatattt cccgtttaag gctcagattg caggaaatca
     2581 gctcattttc atccgtgtag cgggtttgtc ctgccggggc ataccgggcg gatatcttgt
     2641 aaaccccaag ataagaggtc aagaccgcga ttaccccttt ttgcaggtta gtatttccgt
     2701 ataatacggc cggtccgccc actccgatag catcgggata ggcctggtag gtctttacgg
     2761 tttccttaaa cagcccaggg gttatttctg aatcatcgtc aagaaaaaag aggatctccc
     2821 cggaggcttt ctttatgcct tgattgcgtt ggcgcgaggg attaaggcct tcttccagaa
     2881 tagtttcaat ccgttcaagc ggataatccg cctttcggat agagtctatc gcggtcttgg
     2941 ccgaggcccc gggcctcacc gggataatta tgctgataag cggatatgga tccataaata
     3001 aaaacccccc accctaaccc tcccccacac aaagggggga gggtattgga tgaggcgggt
     3061 gagctacttc ttttttttgt tcttggcctt cttctttcct ccctgggcca tcttggcgcg
     3121 ggaaacatcg ccttgcttat ccaggaaata gagatagccg gattccttct ttactccaac
     3181 cttggttacc ttttcgggtt tgcctccctt tttgccgccg cgagccatcc tggcgcagga
     3241 aacatctccg cttttgtcaa tgaaataaag gtaaccatct tttctcttaa tgccttgctt
     3301 agataccttt tctgccataa tctttcacct cccttcaatc gtatttttaa aacaccttat
     3361 tttatgtccc tatttttacc ggatcgaaaa tctgttttaa ggcgctgatt gccgacaata
     3421 ccgccaggta actggttttg ggg
//
LOCUS       DATDUB010000182         3651 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_2305373, whole genome shotgun sequence.
ACCESSION   DATDUB010000182 DATDUB010000000
VERSION     DATDUB010000182.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3651)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3651)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3651
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2305373"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(128..673)
                     /gene="atpH"
                     /locus_tag="VJA84_03635"
     CDS             complement(128..673)
                     /gene="atpH"
                     /locus_tag="VJA84_03635"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: protein motif:HMM:NF012439.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000275 - mitochondrial
                     proton-transporting ATP synthase complex, catalytic sector
                     F(1) [Evidence IEA];
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase F1 subunit delta"
                     /protein_id="HLD41250.1"
                     /translation="MKERILASRYAEAFVGYASKTNSLQDIVAELKGLKMLIRDNPDI
                     QRLFKSRELTYAEKCAFLDAVLGGAFSAELVHMVKLLLRKNRTAILIPVSDYARVKYA
                     STQAVNALLLSAYPLDSEVINLIRESLEKKLKLKLRLYLGIDGDLLAGVQVVIGNTVI
                     DGSVRRRLNDLKEHLLTLKVN"
     gene            complement(639..1157)
                     /gene="atpF"
                     /locus_tag="VJA84_03640"
     CDS             complement(639..1157)
                     /gene="atpF"
                     /locus_tag="VJA84_03640"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR01144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000276 - mitochondrial
                     proton-transporting ATP synthase complex, coupling factor
                     F(o) [Evidence IEA];
                     GO_component: GO:0045263 - proton-transporting ATP
                     synthase complex, coupling factor F(o) [Evidence IEA];
                     GO_component: GO:0045264 - plasma membrane
                     proton-transporting ATP synthase complex, coupling factor
                     F(o) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HLD41251.1"
                     /translation="MMSLDFQQIITQAAGFLVLLVLLKLFFWRPMLSLLDERKERIAS
                     QLKDIENAKSDLSGLKADYEKRLNVIEETARLKVNEAILEGQRITREIKDQAHQEARR
                     IIKDAREYINEEFSKAKEDLKNHIAALAVEAASRIIEAQITEKDSRRIVQDFLDKVKE
                     RDERENFGLPLR"
     gene            complement(1330..1563)
                     /locus_tag="VJA84_03645"
     CDS             complement(1330..1563)
                     /locus_tag="VJA84_03645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006342474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase F0 subunit C"
                     /protein_id="HLD41252.1"
                     /translation="MEANMALAFSLPIGLAIAALASAMALGKAVSAAMEAIARQPEAA
                     AKIQMGMIIGCAFIEALTIYALLTVILLMGKIH"
     gene            complement(1653..2483)
                     /gene="atpB"
                     /locus_tag="VJA84_03650"
     CDS             complement(1653..2483)
                     /gene="atpB"
                     /locus_tag="VJA84_03650"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR01131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000276 - mitochondrial
                     proton-transporting ATP synthase complex, coupling factor
                     F(o) [Evidence IEA];
                     GO_component: GO:0045263 - proton-transporting ATP
                     synthase complex, coupling factor F(o) [Evidence IEA];
                     GO_component: GO:0045264 - plasma membrane
                     proton-transporting ATP synthase complex, coupling factor
                     F(o) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HLD41253.1"
                     /translation="MSSPESAVPELANFITLAVHRLPDTALAGFLHHWENVIFSLIIV
                     AGLSLAAWLAQRNRELIPRRRLQNIVELVVEGMDNFIAGVMGAKEGRRYLPYVGTLFL
                     YIMFMNFMGMVPGMKSPTSSLNTTAALALCTFIYVQWTGIKRLGILGYLDHMAGSPRM
                     PEEKGAFKIFLILLFIPIHILLFIIHIVGELVKPVSLALRLFGNITGEDALLALFVTL
                     GITLLSFIKSPVGFPLQLPVMLLSLILGTVQAVVFSLLSAIYIAMMLPHHEETTAEPR
                     "
     gene            complement(2450..2851)
                     /locus_tag="VJA84_03655"
     CDS             complement(2450..2851)
                     /locus_tag="VJA84_03655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41254.1"
                     /translation="MDISFIYKSLKLTLLVSAVSAIAFLHYFSPRFSLGLISGSLWNA
                     VNIFLFIRLSKALTREAPRKLNIFFLALLKFAGLYAAGYFIVSRSGFSLYGICLGFSL
                     FFLVVFCQSMSMVFTRKRIGLCPALKARSRN"
     gene            complement(2861..3097)
                     /locus_tag="VJA84_03660"
     CDS             complement(2861..3097)
                     /locus_tag="VJA84_03660"
                     /inference="COORDINATES: protein motif:HMM:NF021073.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AtpZ/AtpI family protein"
                     /protein_id="HLD41255.1"
                     /translation="MYPADNKNENLKYLKIVVEVTSIPFVLAGGPVVGFLIGSFLDAK
                     LKTGWLFLVIFLVLGFIAAVKETILIIKRVQRGI"
     gene            complement(3161..3637)
                     /locus_tag="VJA84_03665"
     CDS             complement(3161..3637)
                     /locus_tag="VJA84_03665"
                     /inference="COORDINATES: protein motif:HMM:NF012579.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:1902495 - transmembrane transporter
                     complex [Evidence IEA];
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA];
                     GO_process: GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HLD41256.1"
                     /translation="MENKETKLSDLLKEKFVELDLKEDTKPKIIAELVDLIGKSSRVK
                     NKKALSKAMLEREKLGSTAIGNGVAIPHVKTDGVKNFILAFARKTAGVNFESLDGEKT
                     YIFFVLASPKDMVGPHLKTLSSISRLVKDKFTVELLRKAGAKKDILKIIADTEESL"
BASE COUNT          966 a          955 c          797 g          933 t
ORIGIN      
        1 tagacgcggg caatgccgtc tccgacctga atcacattgc cgacagactc ggtcttgagg
       61 cgcaagcggt atttctctaa ttccttttgg attactgaag tgatttcttc cggtctgatt
      121 tccattttta gttaacctta agtgtaagta aatgctcttt caaatcgttt agtctcctgc
      181 ggaccgagcc gtcaattacc gtattgccga tcaccacctg cacccctgcc agcaggtctc
      241 cgtctattcc caggtaaagc ctcaacttta gcttcagctt cttctccagg ctctcccgga
      301 tcagattgat tacctcgcta tccagaggat aggcgctaag caaaagggcg tttaccgcct
      361 gggtagaggc atattttacc cgggcatagt cgctgaccgg gatgagtatg gccgtgcggt
      421 ttttgcgcag caaaagcttt accatatgga ccagctccgc ggaaaacgcc cctcccagga
      481 ccgcatccag gaaggcgcac ttctcggcat aggtcagctc ccggctctta aaaagccgct
      541 ggatatccgg gttatcccgg ataagcatct tcaagccctt aagctccgcg acgatatcct
      601 ggaggctatt ggtcttagag gcatatccca caaaggcttc agcgtagcgg gaggccaaaa
      661 ttctctcttt catccctctc cttgaccttg tctaaaaaat cctggactat gcgccttgag
      721 tccttttcgg taatctgggc ctcaattatc cggctggccg cctccaccgc taaggcggcg
      781 atgtggtttt tcaggtcttc cttagccttg gaaaattcct cgtttatgta ttcccgggcg
      841 tctttaatta tccgccgggc ctcttgatgg gcctgatcct tgatctcccg ggtaatgcgc
      901 tggccttcca ggatggcctc attgaccttt agacgggccg tctcctctat cacattcagc
      961 ctcttttcat aatcagcctt taggccggat agatcagatt tggcgttctc aatatcctta
     1021 agctgggagg caatcctttc cttgcgctca tccagcaaag aaagcatcgg cctccagaaa
     1081 aagagcttca gcaggaccaa aagcaccagg aatcccgcgg cctgggtaat tatctgttga
     1141 aaatccagac tcatcatatt aatctaaaat ttaaaagtca aaagtcaaaa tcacaatctc
     1201 taaaactaaa aactatttat tctttaaggt taatatgttt tttgctgata ttcttaaaaa
     1261 aataataatt atcttttggt cttgaattgc aattttacat tttgaatttt gagttttaaa
     1321 ttgtcaccat taatggatct tgcccattaa aagaattacc gtcaaaaggg cgtaaatggt
     1381 cagggcctca ataaaggcgc atccgataat catacccatc tggatcttgg cggccgcctc
     1441 cggctgtctg gcgatggcct ccattgccgc tgataccgct ttacccaaag ccatggcgct
     1501 ggccaaagcc gcgatcgcca aacctatagg taaagaaaac gctaatgcca tatttgcttc
     1561 cattttttct cctccttcct tgaaaccgct gaaccatgcg gaacatcacg cggaactacg
     1621 cttgacatgc tatgcgtggt tctgcgtata gttcagcgtg gttcagcggt tgtttcttca
     1681 tgatgcggga gcatcatcgc gatatagatt gccgaaagca ggctgaagac cacggcctgc
     1741 accgtcccta aaattaaaga caagagcatc accggcagct gcaagggaaa accaaccggg
     1801 ctcttaataa aagaaagcag ggttatcccc aaggtcacaa acaaggccaa aagcgcgtcc
     1861 tctccggtaa tattgccgaa aagacgcagg gccaggctca ccggcttgac aagctctccc
     1921 acgatatgga tgataaacaa gagtatgtga atagggataa acaggagaat caggaatatc
     1981 ttaaaagccc ctttttcttc aggcatccgg gggcttccgg ccatatggtc caggtatccc
     2041 aatatcccca gccgttttat cccggtccac tgcacataga taaaggtgca aagagccagg
     2101 gccgcggtgg tattcaggct ggaggtagga gacttcatcc ccgggaccat ccccataaaa
     2161 ttcataaaca ttatgtaaag gaacagcgtc ccgacataag gcaggtaacg ccggccttcc
     2221 ttagccccca tcaccccggc gataaaattg tccatcccct ctaccaccag ctcaacaatg
     2281 ttttgcagcc ttctcctggg gataagttct ctattacgct gggcaagcca ggccgccagc
     2341 gaaagcccgg ccacaataat cagggaaaaa atcacatttt cccaatgatg cagaaagccg
     2401 gccagggccg tatccggcag ccggtgtacc gccagagtaa tgaaattagc taattccggg
     2461 accgcgcttt cagggctgga cataagccta tcctctttcg cgtaaagacc atgctcatag
     2521 attgacaaaa gacaactaag aaaaacaggc taaagcccaa gcatatcccg taaagcgaaa
     2581 atccgctccg gctgactata aaataaccgg ccgcgtagag cccggcaaac ttaagcaggg
     2641 caagaaagaa tatattgagc ttcctggggg cttcccgggt cagggcttta gagaggcgga
     2701 taaataaaaa gatattaacc gcattccaca aagagccgct gattagccct aagctaaagc
     2761 gggggctgaa ataatgcagg aaagctattg ccgaaaccgc gcttaccaac aaggtcaatt
     2821 tcagggattt gtagataaat gagatgtcca ctttactgcg ctagatgcct ctttgcaccc
     2881 gtttaataat caaaatggtt tcttttaccg cggcaataaa ccctaaaacc aggaagataa
     2941 ccagaaagag ccagccggtt ttaagtttag cgtcaaggaa agagccgatt aagaaaccca
     3001 ctaccggccc gccagccagg acaaaaggga tactggtgac ctcaacgaca atcttcaggt
     3061 atttgagatt ctcgtttttg ttatccgcgg gatacatatg accttcggcc agtgtgcaaa
     3121 taatttagca caccttgctt atttgtcaaa ctttttttaa tcacaaagac tcctcggtat
     3181 cggctattat cttcaggatg tcctttttag cgccggcctt gcgcaggagc tcaacagtga
     3241 acttatcttt tactaaacgg gatatgctgg acagtgtctt aaggtgaggg cccaccatat
     3301 ccttaggcga ggccaggaca aagaatatat aggtcttctc accgtccaaa gactcaaaat
     3361 taacccccgc ggtcttacgg gcaaaggcca ggataaaatt cttcaccccg tcggtcttta
     3421 catgggggat agccacgccg tttcctatgg cggtagagcc taacttttcc cgttccagca
     3481 ttgccttaga caaggccttc ttatttttta ccctgctgga tttgccaatc aggtctacca
     3541 gctcggcaat tatcttaggc ttagtatctt cttttaaatc cagttcaacg aacttctcct
     3601 tcaacaaatc cgacaacttt gtctctttgt tttccatttt tatcctttac c
//
LOCUS       DATDUB010000183         2224 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_310290, whole genome shotgun sequence.
ACCESSION   DATDUB010000183 DATDUB010000000
VERSION     DATDUB010000183.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2224)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2224)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2224
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_310290"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..557
                     /gene="folP"
                     /locus_tag="VJA84_03670"
     CDS             <1..557
                     /gene="folP"
                     /locus_tag="VJA84_03670"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: protein motif:HMM:TIGR01496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004156 - dihydropteroate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HLD41257.1"
                     /translation="SVDTSKSEVARQALDNGALIVNDITALNGDPGMLRIVKRYKAAV
                     ALMHMKGRPHTMQKNPRYGCFMREVCGYLKQAMDKALEAGVDRKRIILDPGIGFGKSL
                     EHNLEIIKSLGRLKALGQPILIGLSRKSFLGKITGKETVSRVFAGISANCLAVINGAR
                     IVRVHDVQETRDSLKVLDRILKCQ"
     gene            548..1321
                     /gene="cdaA"
                     /locus_tag="VJA84_03675"
     CDS             548..1321
                     /gene="cdaA"
                     /locus_tag="VJA84_03675"
                     /EC_number="2.7.7.85"
                     /inference="COORDINATES: protein motif:HMM:TIGR00159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004016 - adenylate cyclase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diadenylate cyclase CdaA"
                     /protein_id="HLD41258.1"
                     /translation="MSIDIAYSWKPLLEIVILWFVFYKIMLFFEGTRAVQVLRGIIVL
                     VFAFFVFQVLRLDTLDWLFTHLFGISVIGILVIFQPEIRQGLAKLGQHNVFKPSANEK
                     ETERIVSEIVKAVDVMSRSKTGALIAVEREDSLKDYAESGLRIYAEVSSELIQTIFTP
                     NSLLHDGGVIIQYGRMSYAGCLFPLTDKQDLDRLFGTRHRAAIGLAEQTDALIITVSE
                     ENGDISFCHKGKLMRDLDLDSLRENLKNNLAGAKKGNKA"
     gene            1439..2152
                     /locus_tag="VJA84_03680"
     CDS             1439..2152
                     /locus_tag="VJA84_03680"
                     /EC_number="2.6.99.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017774682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033856 - pyridoxine 5'-phosphate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxine 5'-phosphate synthase"
                     /protein_id="HLD41259.1"
                     /translation="MVKLGVNIDHIATLRQARGGVFPDPVSAAAVCEQAGCDSIVAHL
                     REDRRHINDRDVRRLKKTVKTRFNLEMSIAPEIVDIACGIKPHQATLVPEKRRELTTE
                     GGLDVLGQEEKLKKVISKLSSRGIEVSVFIDPDKRQIAAVPRTGAGIIELHTGRYAEA
                     KTLERRQSCFQEIVTAAEFARGLGLRVNAGHGLDYENVRRIAGIKGIEELNIGYSIIC
                     NSVFWGLESAVRKMRELIG"
BASE COUNT          570 a          474 c          642 g          538 t
ORIGIN      
        1 tctcggtgga tacctctaaa tccgaggttg cccggcaggc cttggataac ggcgcgctga
       61 tagtcaatga catcaccgcc ctaaacggcg atccagggat gctaaggata gttaagagat
      121 acaaggcggc agtggcgctt atgcatatga agggccggcc tcatactatg cagaaaaatc
      181 cgcgttatgg ctgttttatg cgggaggtat gcggatatct gaaacaggct atggataagg
      241 cccttgaggc cggggtagac cggaaaagaa tcattcttga tccggggata ggtttcggca
      301 agtctttaga gcataacctg gaaataatca agtctttggg ccggctaaag gccctgggac
      361 agccaatcct catcgggctc tcccgcaagt ctttcctggg aaagattacc ggcaaagaga
      421 cggtatcccg cgtctttgcc ggcataagcg cgaattgcct ggcagtgata aacggggcca
      481 ggatagtcag ggtccacgac gtccaagaaa cccgggattc gttaaaggta ttagaccgca
      541 tcctgaaatg tcaatagaca tcgcttattc ctggaagcct ttgcttgaga tagtcatcct
      601 ctggtttgtc ttttacaaga taatgctttt ctttgaaggc acccgcgcgg tccaggttct
      661 gcgggggata attgtcctgg ttttcgcttt ctttgtgttt caggtcctgc gcttagatac
      721 cctggactgg ctgtttaccc atctttttgg gatatcggtg atcggtattt tagttatctt
      781 tcagccggag atacgccagg gcctggctaa gttaggacag cataatgtat ttaagccttc
      841 tgccaacgaa aaagagaccg aacggatagt cagtgagatc gtgaaggccg tggatgtgat
      901 gagccgctct aaaaccgggg ccctgattgc cgtggaaagg gaagacagcc ttaaggatta
      961 cgctgaaagc ggattaagga tatacgccga ggtaagctcg gagcttatcc agacaatttt
     1021 tacccctaac agccttcttc atgacggcgg agtgattatc cagtatggac ggatgagcta
     1081 cgccggatgc ttattccctt tgactgataa acaggatttg gaccgtctct tcggcacccg
     1141 ccaccgcgcg gcgataggcc tggccgagca gactgatgcc ttaattatta ctgtctccga
     1201 ggaaaacggg gacatctctt tttgtcataa gggtaagctg atgcgggatc tggacttaga
     1261 cagtttaagg gaaaatctga agaacaatct ggctggggca aagaaaggga ataaagccta
     1321 aagatgagac actggttgtt tggtaatttc aaattaaaac ttatatctct ggtcttggcg
     1381 gcgcttacct ggctttatgt aaaaggcgag atcaccaagt tagtcctgcg tttttaatat
     1441 ggttaaatta ggggtcaata ttgaccacat agccacttta aggcaggccc gcggaggggt
     1501 tttccctgac ccggtgtccg ccgccgcggt ctgtgagcag gcaggctgtg attccattgt
     1561 cgcccatctt agggaagacc gcaggcatat taatgaccgg gatgtccgga ggctgaaaaa
     1621 aacagtaaag accaggttta acctggagat gtctattgcc ccggagattg tggatattgc
     1681 ctgcgggata aaaccgcacc aagccaccct ggtgccggaa aagaggcggg agttgaccac
     1741 tgaaggcggg ctggatgtgc tggggcagga agagaagtta aaaaaagtaa tctctaaatt
     1801 aagttctcgg gggattgagg taagcgtatt tattgacccg gacaaaagac agatcgccgc
     1861 cgtgccgcga acaggggcag ggataattga actgcatacc ggaagatacg ccgaggccaa
     1921 gaccctggag cgcaggcaga gttgtttcca ggagatagtt acggccgcgg agtttgccag
     1981 gggtttaggt ttgagggtca atgccggaca cggtttggac tatgagaatg tccggaggat
     2041 tgccgggatt aaagggattg aagaattgaa tatcggatat tctataatct gtaacagcgt
     2101 tttctggggg ttagaaagcg cggtcaggaa aatgcgggag ttaatcggat gattgccggt
     2161 atcggagtgg atatagttga gatttcacgg attaagaacg cccttacccg ctggaaagac
     2221 gcgt
//
LOCUS       DATDUB010000184         5247 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1141184, whole genome shotgun sequence.
ACCESSION   DATDUB010000184 DATDUB010000000
VERSION     DATDUB010000184.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 5247)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5247)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5247
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1141184"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..767)
                     /locus_tag="VJA84_03685"
     CDS             complement(<1..767)
                     /locus_tag="VJA84_03685"
                     /inference="COORDINATES: protein motif:HMM:NF025010.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SurA N-terminal domain-containing protein"
                     /protein_id="HLD41260.1"
                     /translation="MRKLIIAAVILLTLNSHLKAEDKIIAVVNKDTITQSEAEVYLNI
                     LRLQISRQFKGKELEEKIEEEKKQLIEKMIEDRVIIQEAKRKNLTARPERVKFRIDEI
                     KAGYQSEVDFENSIKEKGLTISDLEKKLNDQMIMRELIEREVKDRIIISPEEVTKFYE
                     KNKNELFAQAQTYAIEAIYLEDEKIARDLERDLKGGLGFKESAQKHKASYRQDTIAKD
                     QLRPEAQNELSRLSAGQVSQPIKIEEGIYFFKLIEILP"
     gene            complement(813..2711)
                     /locus_tag="VJA84_03690"
     CDS             complement(813..2711)
                     /locus_tag="VJA84_03690"
                     /inference="COORDINATES: protein motif:HMM:NF012492.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HLD41261.1"
                     /translation="MFKSLKLYAGQQIRLEEILSSLTGLGYKRQTLTKEEGDFSGRGE
                     ILDIFPATFECPVRITLDYDKIESINSIDPANYRAIWKHQLIIILPSYSRSHKPYRHK
                     TTVSNEELPLSLFLELKKGDLVVHTSHGIGRYINQQKDAFVIEYANKEKLFVPAKDCH
                     LIQKFIGLKGRAPKINRLGTNEWQKTKLRVRKGITAAAVGLLKNQAQRAQADGFSFSK
                     DTPWQKEFEETFPYEETPDQIKATEEVKKDMENPHPMDRLLCGDVGYGKTEVAMRAAF
                     KAVMDNKQAAILVPTTILAEQHYRNFLGRLSNFPVNIQMLSRFKSQAQQKAIIEDIKA
                     GKADIIIATHRLLSNDIAFSDLGLLIIDEEQRFGVMAKEKLKSLKVNVDILTLTATPI
                     PRTLYMGIMGLKDISIINTPPQNRIPISTYVVEYETDIISQAITKELNRKGQVFFVHN
                     RIYDIEDIREKIKNLMPDQARIAYAHGKMPEKELEGIMIDFINREIDCLVSTAIISSG
                     IDIPSANTLIVNNAHNFGLSELHQLRGRVGRFNRKAYAYFLVPRDEPLSPFSQKKLDT
                     IRTHSELGSGFNIAMEDMEIRGVGNLLGYQQHGYIQTIGFDLYCRLLKETVELLKVNQ
                     DGSMVNSQ"
     gene            complement(2855..5038)
                     /gene="secD"
                     /locus_tag="VJA84_03695"
     CDS             complement(2855..5038)
                     /gene="secD"
                     /locus_tag="VJA84_03695"
                     /inference="COORDINATES: protein motif:HMM:NF009583.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031522 - cell envelope Sec protein
                     transport complex [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HLD41262.1"
                     /translation="MFSNKNLKYKIILIIGLIAGSIWYAFPLNKKINLGLDLKGGMHL
                     VLRVDTTQLSKEAKLDAVERAIEIIRNRIDQFGVAEPLIQLQSQNQIVIQLPGVTDRQ
                     RAKELIGKTALLEFKLVNDKAEDISKAEKGEAVEGFDYVKDEDGKAILLSKTASLTGE
                     AIKNAGVSMDQYGLPAVKLEFNEKGIDAFAKLTGEHINERLAIVLDGKTHSAPVIRSK
                     IDAGEAEITHGGGFSPEEANDLSIILRSGALPAPMIIEEERTIGALLGADSIKRGIKA
                     SILGTTMVLVFMLIYYLLSGFIACIALLINFLFILAYMGCFGATLTLPGIAGIVLTLG
                     MAIDANVLINERIREELRSGKSLFLAIKSGYEKAFSAILDSNVTTLAAAFFLFQFGTG
                     PIRGFALTLTVGLLASMFSAIFITRTIFEVLLLNPKFKNLKMLHLIGETKIDFIGKRV
                     FFYCLSLAVIIIGLTAFFKKGKDIYGIDFAGGQIQEYQFQKPVPIEEMRYLLKEAKIS
                     DAVIQQFKEDPRIIMLRTPSDTADIVSRKIKEGFKDNPGEVLRIEKVGPVAGKELQQK
                     AVLALGLSLIAILIYVAFRFKHFNFALAGIIALFHDILVTVGVLALTNRQIDLLIVTA
                     LLTIAGYSINDTIVIYDRVRENLRLRHKLNLAEVINLSVNQTLSRTILTSGVTLFAVI
                     ALFLWGGEVLRNFSFCLLVGFISGVYSTVFIASPLVLAWAKKRSK"
BASE COUNT         1182 a         1251 c         1274 g         1540 t
ORIGIN      
        1 ggcagaatct ctatgagctt aaagaaataa atcccttcct caatctttat gggctgggat
       61 acctgcccgg cggaaaggcg ggagagctca ttctgggcct cgggccgcag ctggtctttg
      121 gctatggtgt cctgtctgta gctggccttg tgtttctggg cggattcctt gaagcccagt
      181 ccgcccttta aatccctttc caaatcccgg gcaattttct catcctccag ataaatagct
      241 tctatcgcgt aggtctgggc ctgggcaaag agctcgtttt tgtttttttc gtagaatttg
      301 gtcacttcct ccgggctgat tattatcctg tctttcactt ctctttcaat cagctcgcgc
      361 attatcatct ggtcattgag ttttttctcc aggtcgctta tagtcaggcc tttttcctta
      421 atggaattct caaaatccac ctctgactgg tatccggcct tgatctcgtc tatcctgaat
      481 ttcacccttt ccggccgcgc ggtcaggttc ttgcgcttgg cctcctggat gatcacgcgg
      541 tcttctatca ttttctcaat cagctgtttc ttttcttcct caatcttttc ctccagctct
      601 tttcctttga actgccggct aatttggagc cggaggatgt tcaggtaaac ctcggcctcg
      661 ctctgggtaa tggtgtcctt attgactacg gcgatgatct tgtcctcggc cttcaggtga
      721 gaattaaggg ttaacaaaat aaccgcggct atgattaact tgcgcatcga tcctcctaaa
      781 taattaaggg tcaatagtcg atagtccata ggctattgac tattgaccat cgacccatct
      841 tgatttacct tcaatagttc caccgtctct ttaagcaggc ggcagtataa gtcaaagcct
      901 attgtctgga tatagccgtg ctgctggtat cccaataaat tccccacgcc ccggatctcc
      961 atatcttcca tcgcgatgtt aaagccggag cctaattccg agtgggtcct gatggtatcc
     1021 agcttctttt gggaaaacgg gcttaaaggt tcatctctgg ggacaaggaa ataggcatag
     1081 gccttgcggt taaacctgcc tacccttcct cttaactgat gcagttcgga caggccgaaa
     1141 ttatgggcgt tgttgacaat cagggtgttt gccgaaggga tgtctatccc ggaggagatg
     1201 atggcggtag aaaccaagca gtcaatttcg cggttaataa aatcaatcat aatcccttcc
     1261 agctctttct ccggcatctt gccgtgggca taggcaatcc tggcctgatc aggcatgagg
     1321 ttttttatct tctcgcgaat gtcctctatg tcgtaaatcc ggttatgcac aaagaatacc
     1381 tggcctttgc ggtttaattc cttagttatt gcctggctga ttatatccgt ctcatattct
     1441 accacataag tggagattgg gatacggttt tgaggagggg tgttgattat ggagatatct
     1501 tttaagccca ttatccccat atacagggtc cggggtatgg gagtcgcggt aagggtaagt
     1561 atatccacat tgactttcag ggatttgagc ttttcctttg ccattacccc gaaacgctgc
     1621 tcttcatcaa ttatcaatag ccctaaatca gagaacgcga tatcatttga gagaagccgg
     1681 tgggtcgcga taataatatc cgccttgccg gccttgatgt cttcaattat cgccttttgc
     1741 tgggcttgac ttttaaaacg ggaaagcatc tggatgttga ccgggaaatt agagaggcgc
     1801 cccaggaagt ttcgataatg ctgttcggct aatattgtgg tggggaccag gatggcggcc
     1861 tgcttattgt ccattaccgc cttgaaggcc gcgcgcatag ccacctcggt cttgccgtat
     1921 cctacatctc cgcaaagcag gcggtccatc ggatgaggat tctccatgtc tttcttcact
     1981 tcttccgttg cttttatctg gtccggggtt tcttcgtaag gaaaggtttc ttcaaattcc
     2041 ttctgccagg gggtgtcttt actgaaagaa aaaccgtctg cctgggccct ttgggcctgg
     2101 ttttttagca ggcctacagc cgcggcggta atcccttttc ggacgcggag cttggttttc
     2161 tgccactcgt tggtccctaa acgattgatt ttgggtgccc ggccttttag gccgataaat
     2221 ttctggatca ggtggcagtc ttttgccggc acaaagagct tttccttgtt ggcgtattca
     2281 atgacaaagg cgtctttctg ttggtttata tatcggccaa tgccatggct ggtatgcacc
     2341 acaaggtcgc ctttctttaa ttccaggaaa aggcttaagg gcagttcttc atttgaaacg
     2401 gttgttttgt gccggtaagg tttgtggctg cggctatagg aaggcaggat aattatcagc
     2461 tggtgcttcc agatggcccg gtagtttgcc gggtcaatgc tgttgatgct ctcaatctta
     2521 tcgtaatcca gggttatcct gaccgggcat tcaaatgtgg cgggaaagat gtctaagatt
     2581 tctccccggc cggagaaatc tccttcttcc ttggtgaggg tctgtctttt atagcccagg
     2641 ccggttaaag atgagagtat ttcctccagc cttatttgtt ggccggcata gagctttaaa
     2701 gatttgaaca tctgtttgga gagaaaagaa atgattaaag gaccatagct tatcgactat
     2761 aggccatcag gccatggttt ggcttcctat aagccagatg gcgatggtgc ggcttccaat
     2821 agccgcagcc atagccaaag ccattgaccc ttgattattt acttcttttc ttggcccagg
     2881 ctaataccag cggtgaggca ataaagacgg tagaatagac cccggagata aatcctacca
     2941 gcaggcagaa tgaaaaattg cgcaggacct caccacccca aagaaatagg gcaataaccg
     3001 cgaaaagggt taccccgctg gtcaaaatgg tccgggaaag ggtctggttg acgcttaggt
     3061 ttatgacctc ggccaggttg agtttatggc gcaggcgcag attttccctt acccggtcat
     3121 aaataacgat ggtgtcattt atggagtaac cggcaatggt caataaggcc gttactataa
     3181 gcaggtctat ctgccggtta gtcagggcca ggacgcctac ggttaccaga atatcatgaa
     3241 acaaggcgat tatgccggcc agggcaaagt taaagtgctt aaacctgaag gccacatata
     3301 taagtatggc aatcagcgat aggcctaagg ccaagacagc tttttgctgt aattccttgc
     3361 cggctaccgg gcctaccttc tctatccgga gaacttcccc ggggttatct ttaaagcctt
     3421 ctttgatttt ccgggatacg atatccgcgg tatcgcttgg ggtgcgcagc attattatcc
     3481 gggggtcttc tttaaactgt tggatgacgg catcggatat cttggcttct tttaaaaggt
     3541 agcgcatctc ttctatcggc accggtttct ggaattgata ctcctggatc tggcctccgg
     3601 caaagtctat tccgtagatg tcttttcctt ttttaaagaa ggcggtcagg ccgataataa
     3661 ttacggcaag agatagacaa tagaaaaaca cccttttgcc gataaaatca atcttggttt
     3721 ccccgattag gtggagcatt ttcaggtttt tgaatttagg attgagcaga aggacttcaa
     3781 aaatagtccg ggtaataaag atggcgctga acatactggc taaaagccct acagttaaag
     3841 tcagggcaaa accgcggatg gggccggtgc cgaattgaaa aaggaaaaag gccgcggcca
     3901 gggtagtgac attagagtct aagatagcgc tgaaggcctt ttcatagccg cttttgatgg
     3961 ccaggaaaag ggatttccct gaccttagct cttcgcggat ccgttcgtta atcaggacat
     4021 tggcgtctat cgccataccc agggtaagca ctataccggc aataccgggc agggtcaggg
     4081 tggcgccaaa gcatcccata taggctaaga taaagagaaa gttaatcagc agggcaatgc
     4141 aggcgatgaa tccggataaa agatagtata tcagcataaa tactaagacc attgttgttc
     4201 ccaggatgct ggcctttatc cctcttttga tggaatccgc ccccaggagg gctccgatgg
     4261 tgcgttcttc ttctattatc atcggcgcgg gcagggcccc ggaacgcagg atgatgctta
     4321 aatcattggc ttcttccggg ctgaaaccgc cgccgtgggt gatttccgcc tctccggcgt
     4381 ctatcttgga acggatgacc ggagcggaat gtgttttgcc gtctaagaca atagccagcc
     4441 tttcattaat gtgttctccg gtgagcttgg caaaggcgtc tatgcctttt tcgttaaatt
     4501 ctaattttac cgccggcagg ccgtattggt ccatgcttac cccggcattt tttatggcct
     4561 cgccggtcaa agaggcggtt ttgcttaaaa gtatggcttt gccgtcttca tcttttacat
     4621 aatcaaatcc ctcaaccgct tcgccttttt cggctttgct tatgtcttcg gccttgtcgt
     4681 ttactaattt gaattccagg agcgcggtct tcccaatcag ctctttggcc cgctggcggt
     4741 cggttactcc gggaagctgg attactatct ggttctggct ctggagctgg ataaggggtt
     4801 cggccacccc gaactggtct atgcggttac ggataatctc aatagccctt tctacggcat
     4861 ccagtttggc ttccttagac aactgggtag tatccacccg tagaaccagg tgcatcccgc
     4921 cttttaagtc cagccccaga tttattttct tatttaaagg aaaggcatac cagatggatc
     4981 cggctatcag tcctattatc agaattatct tatacttaag gttcttgttg gaaaacatag
     5041 taaacctctc ctctttctat tgactattga ctatcggcta tagacccttc attattttct
     5101 ttttttaggt tgacgccttt tctatccttg agatggcatc ccggtccact tccatcttta
     5161 cattatcgtc tatgcgcagg gtaacagtct tgtctttgac attgagcact accgcgtgga
     5221 tccccgcgga ggttaccacc gtgtcat
//
LOCUS       DATDUB010000185         3309 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_2464246, whole genome shotgun sequence.
ACCESSION   DATDUB010000185 DATDUB010000000
VERSION     DATDUB010000185.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3309)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3309)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3309
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2464246"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(87..1280)
                     /locus_tag="VJA84_03700"
     CDS             complement(87..1280)
                     /locus_tag="VJA84_03700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41263.1"
                     /translation="MASRPLAKVRIRKLKNNAYQLLVENKPYFIKGVCYSPVAIGQGN
                     GEANFWQDPNQPWKVDGELMRQMGVNTARFYQAPEDLEAGKKVIADLYQLYGIRSIMG
                     HWLGFWEYPCPRYAEGDFREKIKKEVLDMVNAYKDQPGILLWILGNENNYSFSERVNP
                     WPFPGSDKISDIRERSRLRANIYYSFVNELAKEIHKIDPDHPVALGNGELISLEAAAQ
                     VCPDIDLAALIIYRGKTFGNLFKSLRLTWDKPAVLSEFGADSYDAYLKKEDQNTQAEF
                     LEAQWKEIFKNSYPNKEGAQNCLGGTLFEWTDEWWKHNEAAPATWKIHDTESNWSNGS
                     YYFDIKAERNMNMNEEWFGIIALSEEMKNGINKRIPRKAYYVLRDFWRNPEVKSEKRK
                     AKSEK"
     gene            complement(1402..2580)
                     /locus_tag="VJA84_03705"
     CDS             complement(1402..2580)
                     /locus_tag="VJA84_03705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41264.1"
                     /translation="MNRKVLSLAVVSMLMLTAGMAAAQEKEAAVEEALKPANKAFSVY
                     ADRQSSDNHYIPSGFMGDYGDIKLNDQSADNPHAGSTCIQFVYSAKKSQGQGWAGVYW
                     QNPANNWGSKKGGFDLTGMTKLSFWARGQKGAEILQKVKIGGMGGTYPDTAEIESGPI
                     ELSDSWKEYTVNLAGKDISYISGGFAWVATVDQNPDGATFFIDDIKFEADPAVKEAKK
                     EGQKMPFYVYSDRRSVTNHFIPSGWMGDYGDLKIDTGWKENPYMGDTCVKIIYTGKNS
                     QGARWAGIYWQNPANNWGAIEGGFDLSKASKVAFWARGEKGGERIEEFKLGGIMGEFS
                     DSDIASVGPVILSTEWQQYTIDLKGKDLSYISGGFCWATNVDVNPEGAVFYLDEIKYE
                     "
     gene            complement(2646..>3309)
                     /locus_tag="VJA84_03710"
     CDS             complement(2646..>3309)
                     /locus_tag="VJA84_03710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41265.1"
                     /translation="EEFKDEPFVLFWILGNENVYGVACNADKDPDSFFKFANEAALLI
                     KGLDKNHPVAIASGDTIYLDRFAKLSPDIDIFGANVYRGDYGFGNFWQAVKEETDKPA
                     MLTEFGCPAYAAGMSQEEAEEAQAAYHRGAWEDIACNMSVNCGSGNSIGGVVFQFLDE
                     WWKAYEPKIHDTKGFFTGPFPDGYMHEEWLGLAGQGDGADSPFKRNLRRAYYFYQNAW
                     KE"
BASE COUNT          763 a         1014 c          695 g          837 t
ORIGIN      
        1 cctgccacgg gagcaggccg aatgtccccg cgaaaacata accttgacag gacccatttt
       61 tcccctcacg catctgaccc attactctat ttttcactct ttgcttttcg cttttcgctt
      121 ttaacttccg gatttctcca gaagtcgcgc aggacataat aggccttgcg cgggattctt
      181 ttattaatac cgtttttcat ctcctcggac aaggcgatta tcccaaacca ctcctcgttc
      241 atattcatat tccgctcggc cttgatatca aaataataac tcccgtttga ccagttgctt
      301 tcggtatcgt gaatcttcca ggtggcgggt gcggcctcat tatgcttcca ccattcgtcg
      361 gtccattcaa acagcgtccc gcccaggcaa ttctgggcgc cttctttatt gggataactg
      421 ttcttaaata tctctttcca ctgggcctcc aggaactctg cctgcgtatt ctggtcctct
      481 ttcttcagat aggcgtcata gctgtccgcg ccgaattcac ttaagactgc cggcttgtcc
      541 caggtcagcc gcaaagactt aaaaagattg ccaaaggtct tgccccggta gattatcaat
      601 gccgccaggt ctatatccgg gcacacctgt gcggcggcct ccaaagaaat cagctcgccg
      661 ttacctaatg ccaccggatg gtccgggtca atcttgtgta tctctttcgc cagctcattg
      721 acaaaggaat aatagatgtt cgcccgcagg cgggagcgct ccctgatatc actgatttta
      781 tcgctcccgg ggaagggcca gggattgacc ctttcgctaa aagaataatt attctcatta
      841 cctaatatcc aaagcagtat ccccggctga tccttatacg cgttcaccat atccaggact
      901 tcctttttta tcttttcccg aaagtcgccc tccgcgtagc gcgggcaagg gtattcccag
      961 aaacccagcc agtgccccat aatggaacgg attccataga gctgatacaa atcagcgatg
     1021 accttctttc ccgcttctaa atcctccggg gcctgataaa aacgcgcggt attcaccccc
     1081 atctggcgca tcagctcgcc gtcaaccttc cagggctgat tagggtcctg ccagaagttg
     1141 gcctcgccgt taccctggcc tatggctacc ggagaataac aaaccccttt aataaaataa
     1201 ggcttatttt caactaacag ctgataggcg ttattcttga gtttgcggat cctcaccttg
     1261 gcaaggggcc gggaagccat cccggacagg gaaaagaaaa caacaagagc acaagagcac
     1321 aagagcacaa gagcacaaat cttcttagat tgcgccgttg tgccctggag ccctggcgcc
     1381 ctggcgctcc ggtgctctgg tttactcgta cttgatctca tccagataaa ataccgctcc
     1441 ctccggattt acatccacat tggtggccca gcagaaaccg ccgctgatat aagaaaggtc
     1501 cttgcctttc aaatcaatgg tatactgctg ccactcggta ctcaaaatta ccgggcctac
     1561 ggaggcgata tccgaatccg aaaactcccc cattatcccg cccagcttaa actcctcaat
     1621 cctctctccg cccttctcgc ccctggccca aaaggccact ttggaggcct tggacaaatc
     1681 aaacccgccc tcaatagcgc cccagttatt ggccggattc tgccaatata tcccggccca
     1741 gcgcgcgccc tgtgaattct tgccggtata gataatcttg acgcaggtat ctcccatata
     1801 gggattctct ttccagccgg tatctatctt taaatcgccg taatccccca tccaccccga
     1861 agggataaaa tgattagtca ctgaacgccg gtcggaatag acataaaaag gcatcttctg
     1921 gccttctttt ttggcttcct tcaccgccgg gtcggcctca aactttatat catcaataaa
     1981 aaaggtggcc ccgtcagggt tctgatcaac cgtagccacc caggcaaaac cgccgctgat
     2041 gtaagaaata tcttttcccg ccaggttgac cgtgtactct ttccagctgt cggagagctc
     2101 tatcgggccg ctttcaatct ccgcggtatc cggataggtc ccgcccatgc cgccgatctt
     2161 aaccttctgc agtatctccg cgcctttctg ccccctggcc cagaaagaca gtttggtcat
     2221 cccggtcagg tcaaaaccgc ctttcttgga gccccagtta ttggccggat tctgccaata
     2281 aaccccggcc cagccctggc cttgagactt cttggcgctg taaacaaact ggatgcaggt
     2341 agagcctgcg tgaggattat ccgcggactg gtcattaagc ttaatatccc cgtaatcccc
     2401 cataaacccg gaagggatat aatgattatc cgacgattgc ctgtcggcat acacgctaaa
     2461 ggccttattt gccggcttaa gcgcctcttc cacggccgct tccttctcct gggccgcggc
     2521 catacctgcc gtcagcatca acattgacac cacggccaaa ctcaacactt ttctgttcat
     2581 tttaccttcc tccttttttt catctaactc cctaaactcc taaactccca aactcttaaa
     2641 ctcaactatt ccttccaggc gttctgataa aaataatacg cccggcgcaa attccgctta
     2701 aatgggctgt ctgccccgtc gccctggccg gccaggccca gccattcctc gtgcatataa
     2761 ccgtcgggaa acggcccggt aaagaaacct ttggtatcgt gaatctttgg ctcataggcc
     2821 ttccaccact catctaagaa ctgaaaaacc accccgccga tggaattgcc gcttccgcag
     2881 ttaacgctca tattgcaggc aatatcctcc catgcccccc ggtgataggc ggcctgggcc
     2941 tcttccgcct cctcctggct catccccgcg gcataggccg gacagccgaa ttcagtaagc
     3001 attgccggct tatccgtttc ctcttttacc gcctgccaga aattaccgaa accatagtcc
     3061 ccgcgataga cattggcccc gaagatatct atgtcggggg agagtttggc aaaccggtct
     3121 aagtatatcg tatctccgct ggctatggct acgggatgat ttttgtctaa gcccttgatc
     3181 aaaagggcgg cctcattggc aaacttaaag aaactgtccg ggtccttatc ggcgttacag
     3241 gccaccccgt aaacattctc attgcctaaa atccagaaca agacaaaagg ctcatcctta
     3301 aattcctcc
//
LOCUS       DATDUB010000186         2570 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1326791, whole genome shotgun sequence.
ACCESSION   DATDUB010000186 DATDUB010000000
VERSION     DATDUB010000186.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2570)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2570)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2570
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1326791"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..252)
                     /locus_tag="VJA84_03715"
     CDS             complement(<1..252)
                     /locus_tag="VJA84_03715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41266.1"
                     /translation="MPWYLNKKIFSIFILAGLMLFSAGDSCFAAEEKYSLTASLRHIK
                     FGKSDISTDFYASGIILRTKEGKLKSVKGKAWTQASLLNF"
     gene            complement(233..>2570)
                     /locus_tag="VJA84_03720"
     CDS             complement(233..>2570)
                     /locus_tag="VJA84_03720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011345226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit"
                     /protein_id="HLD41267.1"
                     /translation="TEHILLVLIREGEGVAAAVLEKMGLNLQTIRLEVEKVVQPGPST
                     QILGDIPFTPRAKKALELAAEEARALGHNYIGTEHILLGIIREGESVASQVLLNLGLD
                     LERVRNEIMAVLGAATPGFSQQQQPAPGRTKTPALDAFGRDITQAAKDGKLDPVIDRK
                     MEIDRIIQILSRRTKNNPVLLGEAGVGKTAIVEGLAQLIVSGNVPEVLRNKRMIILDL
                     ALMVAGTKYRGQFEERIKAVMEEIKRSKDVIIFIDELHTLVGAGAAEGAIDASNILKP
                     SLSRGEIQCIGATTLDEYRKYIEKDAALERRFQTIMVEPPNVEQTVEILKGLRERYET
                     HHKVEFLDEALEAAAKMSDRYVPGMFLPDKAIDLIDESGSRARLDVLVLPPNIKELED
                     KVEALKKEKEALIKAQDFERAAALRDQERAARLELEGINKDWNQKKDQMRPKVGEDEI
                     AKIVSQWTGIPLIRLEQKEGDKLLKIEDGLRQRVVGQEEAISAIAHAVRRSRAGIKDP
                     RRPIGSFIFLGPTGVGKTLLARALAEFMFGDEEALVQIDMSEYMEKHNLSRLIGAPPG
                     FVGYEEGGQLTEKVRRRPYSVILLDEIEKAHQDVSNLLLQVFEDGRLTDSFGRKVDFR
                     NTIVIMTSNVGAELIRKQGSLGFKTQKEDLTYQDMKDKLLEEVKRTFKPEFLNRIDDI
                     IVFRPLVKDHLHSIVEIELRYLTERLKEQKLTLELTPAAKEFLIEKGFDPVFGARPLK
                     RIIQRFVEDPLAQDIISKRFKEGDKVKSDKKGDALVFE"
BASE COUNT          561 a          758 c          582 g          669 t
ORIGIN      
        1 aaaattaagc aaagaggcct gggtccaggc cttgcctttt accgatttta atttcccttc
       61 tttggtcctt aaaattatcc ccgaggcata aaaatcggtg gagatatcgc tcttgccgaa
      121 tttgatatgc cgcaggctgg ctgtcaaact gtatttctcc tccgcggcaa agcaactatc
      181 cccggcagaa aatagcatta agccggccag aataaatatg gaaaaaatct ttttattcaa
      241 ataccagggc atcgcctttt ttatcagact ttaccttatc cccttcctta aagcgcttgg
      301 aaataatatc ctgggccaga gggtcctcta caaaacgctg gattatcctc tttaaaggcc
      361 tggccccgaa taccgggtca aagccttttt caatcaggaa ctccttggcc gccggagtaa
      421 gctccagggt aagcttctgt tctttcagcc tttcagtcaa ataccgaagc tctatctcca
      481 caatactgtg caggtgatcc ttaactaagg gacggaacac gattatatcg tcaatccggt
      541 ttaagaactc cggcttaaag gtgcgcttta cctcttccaa aagcttgtcc ttcatatcct
      601 gataggtgag atcctctttc tgggtcttaa atcccaaaga gccctgtttg cgaatcagct
      661 ccgcccccac attggaggtc ataatcacga tggtattgcg gaaatccacc ttccggccaa
      721 agctgtcggt caggcggccg tcctcaaaga cctgcaagag aagattagaa acatcctgat
      781 gggccttctc aatctcgtcc agcaggatca ccgaatacgg acggcggcgc accttttcgg
      841 ttaattgccc gccttcttca tagccgacaa aacccggagg ggcgccgatc agccgggaga
      901 gattatgctt ttccatatac tccgacatat ctatctggac cagggcctct tcatcgccaa
      961 acataaattc ggctaaggcc cgggctaaaa gggttttacc tacgccggtc gggcctaaga
     1021 agataaatga gcctatcgga cggcgggggt cttttatccc ggcccgggaa cggcgcaccg
     1081 cgtgggcaat cgcggagatc gcctcttcct ggcctactac cctctggcgc aggccgtctt
     1141 caatcttcag cagtttatcc ccttcttttt gctccagccg gattaaaggt atgccggtcc
     1201 attgggaaac tatcttggca atttcatctt ctcccacttt ggggcgcatc tgatcttttt
     1261 tctgattcca gtctttattt atcccttcca gttctaaacg cgccgcccgt tcttggtcgc
     1321 gcagggccgc cgcccgttca aaatcctggg ccttgatcaa ggcctctttt tcctttttta
     1381 aagcctctac cttgtcttcc aattccttga tattaggagg caggaccaat acatctaagc
     1441 gggcccggga accagactcg tcaatcaggt ctatggcctt atccggaagg aacatccccg
     1501 gaacatatct gtccgacatc ttggccgcgg cctccaaggc ctcatctaag aattccacct
     1561 tatgatgggt ctcgtatctt tcccgcaggc cttttaatat ctccaccgtt tgctccacat
     1621 tgggaggctc aaccattata gtctggaacc ttctctctaa ggccgcgtct ttttctatat
     1681 acttgcggta ttcatccagg gtagtcgccc cgatgcactg gatctccccc cgggataaag
     1741 aaggcttcag gatattagag gcgtcaatcg ccccttccgc cgctccagcc ccaaccaggg
     1801 tatgcagttc atcaataaag ataatcacat ccttggagcg tttaatctcc tccatcaccg
     1861 ccttaatcct ttcctcaaac tggccgcggt atttggtgcc ggcaaccatc agcgccaggt
     1921 caaggataat catccgtttg ttgcgcagga cctccgggac attgccgctg acaattaact
     1981 gggccagccc ctccacaatg gcggtcttac ctactccggc ctcgcctaaa agcaccgggt
     2041 tgttcttggt cctccgggag aggatttgaa tgatcctgtc tatctccatc ttgcggtcaa
     2101 tcaccgggtc taattttccg tccttagccg cttgggtaat atcccggcca aaggcgtcta
     2161 acgccggtgt cttggtcctt cccggggcag gctgttgctg ctggctaaac ccgggcgtag
     2221 ccgcgcccag gaccgccatt atctcattgc gcaccctttc taaatctaat cccagattaa
     2281 gcaaaacctg ggaagccacg gattcccctt ccctgataat ccccagcaat atgtgttcgg
     2341 tcccgatata gttatgcccc agggcccggg cttcttcagc cgccagttcc agggccttct
     2401 tggcccgggg ggtaaagggt atgtcgccaa gtatctgggt gcttggccct ggctggacca
     2461 ccttttccac ctctaagcgg atagtctgca ggttcaggcc catcttttcc aagaccgcgg
     2521 ccgccacccc ctcgccctcg cggataagga caagcaggat atgctcggtg
//
LOCUS       DATDUB010000187         2555 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_129250, whole genome shotgun sequence.
ACCESSION   DATDUB010000187 DATDUB010000000
VERSION     DATDUB010000187.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2555)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2555)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2555
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_129250"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..935)
                     /locus_tag="VJA84_03725"
     CDS             complement(<1..935)
                     /locus_tag="VJA84_03725"
                     /inference="COORDINATES: protein motif:HMM:NF028237.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase N-terminal 7TM
                     domain-containing protein"
                     /protein_id="HLD41268.1"
                     /translation="MSPFYFNDIFFIHILALCGGIISIGLAVFVYLKDSRSPLNRLWS
                     GVSLCVGMWCLGAYFLLVSKNKDTVLLVSRLMHFASLWIPILQLHFTYQLLQLKRTRK
                     RQVFLIAGYICIFILIFFNVFSSFFILDVVKKPYFRYYPVPGPLYHLFTVIYFSYSIY
                     WSYLLIKNIPLLSPARRNQVKYVAIASIVGIIGGTGTFPLVYNIPFAPYTSLFIPLYP
                     LIISYAILRYRLMDIRLVLTRVSIFAVVYTFVLGIPFVLGVWLKPWLSLIAGGLWWLI
                     PLGTMALLATIGPFIYIYLDKKAEERLFKRQRRYQ"
     gene            complement(932..1624)
                     /locus_tag="VJA84_03730"
     CDS             complement(932..1624)
                     /locus_tag="VJA84_03730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41269.1"
                     /translation="MMRLINKLSLCVVAAQCAATTLISVCWISTAMAQEENGILLQKA
                     LARIESRVQTLSAYKCRLSTVCVLGKTVEKRAYNYYFSRPGLVRMEIIEGKDKGAVLV
                     YKQGIVYAKRFPLFFTLRFKPQSRMVTTIRGGQLDQTDLGFILSILKGPGRKLSWQGK
                     EELNGQILEVIELRDEKARPGEPQKGIFWARQDGFILKYELYDNDNNLVFRQGHDNIQ
                     LEVSFSPGLFKL"
     gene            complement(1624..>2555)
                     /locus_tag="VJA84_03735"
     CDS             complement(1624..>2555)
                     /locus_tag="VJA84_03735"
                     /inference="COORDINATES: protein motif:HMM:NF006829.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ketoacyl-ACP synthase III"
                     /protein_id="HLD41270.1"
                     /translation="EELEKRLSLPAGWVEMHCGVKERHFAKEGELPSDFAVRASKAAF
                     ESAGCGIDDIDLIIFTSTCRDRAIPSTAAIIQDKLGATKPIATFDLNSVCVSFLVGFD
                     IARMYIENGIYNNILVASAELCSRVLNFKDKNSAILFGDASAAVVLTASSDNQESEVK
                     FSYFATDASKKDDITIKGFGLEYPPPATNDVPELNMFEMSGLAVFKNSLGVANLLFDK
                     LFSGSGFSRESCALFVPHQANLPALKKFIAKAKLPMGKCYINIEKYGNTASASIPLAF
                     VESLEDKKIKRGEQLILFGVGAGFSWGGCCLIY"
BASE COUNT          774 a          622 c          529 g          630 t
ORIGIN      
        1 tcctgatagc gcctttgcct cttgaaaagc cgctcctcgg cctttttatc caaataaata
       61 tagataaacg ggccgatagt agctaataat gccattgtcc ccagggggat gagccaccag
      121 agccctcccg cgattagcga aagccaaggc ttaagccaca cccccaaaac aaaaggtatg
      181 cctaagacaa aggtatagac cacggcaaat atactcaccc gggtcaggac caagcggata
      241 tccatcagcc ggtagcgcag gatggcgtag gaaatgataa ggggatatag cgggataaat
      301 agtgaggtat atggtgcaaa ggggatgtta taaactaagg ggaaagttcc agttcctcca
      361 ataatcccga ctatagaagc gatagccaca tatttaacct gattgcgtct tgcaggagaa
      421 agcaagggaa tattttttat taacaaatat gaccagtaga tactataact aaaatagata
      481 acagtaaaaa gatgatacag cggcccagga acaggataat acctaaaata aggctttttt
      541 acgacatcaa ggataaagaa cgaggaaaag acattaaaaa agataagtat aaaaatacaa
      601 atataaccag ctattaagaa aacctgcctt ttccttgttc tctttaactg taggagttga
      661 taagtaaaat gaagctgtaa gattggaatc cataaagaag caaagtgcat tagcctggaa
      721 accaacagaa ccgtatcctt atttttacta accaataaga aatacgcccc caagcaccac
      781 attcccacac aaaggctaac tcctgaccat aggcgattaa ggggagatct actgtctttc
      841 agataaacaa aaaccgccaa tcctattgaa attatacctc cgcataaagc caagatatga
      901 ataaagaata tgtcgttaaa ataaaatggg ctcatagttt aaaaaggccg gggctaaaac
      961 ttacctccaa ctgaatatta tcgtgaccct gccgaaaaac caggttatta tcattgtcgt
     1021 ataactcgta tttcaggata aagccgtcct ggcgcgccca gaaaatccct ttctggggct
     1081 ctcccggccg cgccttttca tcccttaatt ctataacctc caggatttgg ccgtttagct
     1141 cttctttccc ttgccaggat aatttacggc caggtccttt aagtatagaa aggataaacc
     1201 ccaaatccgt ctggtcaagc tgtcctcccc tgatagtggt aaccatccgg ctctggggtt
     1261 taaagcgcag ggtgaaaaat aaaggaaacc tcttggcata gacaatacct tgcttataga
     1321 ctaaaaccgc ccccttatct ttgccttcaa taatttccat ccgcactaac cctggccttg
     1381 aaaaataata attataggcc cttttctcaa cagtcttgcc caggacgcag actgtggaca
     1441 ggcggcattt ataggccgat aaggtttgca ccctggattc tatcctggcc agggcctttt
     1501 ggagcaatat cccgttttct tcttgcgcca tagccgttga gatccagcag acgctaatca
     1561 atgtagtagc cgcgcactgt gcggccacta cgcacagaga taacttgttt attaatctca
     1621 tcatcaataa atcagacagc acccgcccca ggaaaatccc gcccccactc caaaaaggat
     1681 taactgttca ccgcgtttta tcttcttatc ttccaaagat tcaacaaaag ccaaaggtat
     1741 tgaggcggaa gccgtattcc cgtatttttc tatatttata taacattttc ccatgggcaa
     1801 tttcgccttg gctataaatt tctttaatgc cggtaaattc gcctgatgcg gaacgaatag
     1861 tgcgcaggat tcacggctga atccgcttcc ggaaaataat ttatcaaaga gaagattggc
     1921 aacacccaga ctgttcttaa aaacagccag gccactcatc tcaaacatat tcaattccgg
     1981 gacatcattc gtggctggcg gtggatattc caggccaaag cccttgatgg tgatatcgtc
     2041 ttttttgctg gcgtcagtgg caaaatagct gaattttacc tcgctttcct gattatccga
     2101 agatgcggtt aaaaccactg ccgcggaggc atccccgaaa agtatggccg agtttttatc
     2161 cttaaagtta agaacccggg agcaaagctc cgcggaagcc accaggatat tattatatat
     2221 cccgttttca atatacatcc gggcaatgtc aaaaccaact aagaagctga cgcagacaga
     2281 gttcaggtca aaggtggcga taggttttgt tgcccccaat ttatcctgaa ttatggccgc
     2341 agtggaaggg attgccctgt cccggcaggt agaggtaaag ataatcaggt caatatcgtc
     2401 aatcccgcac ccggctgact caaaggccgc tttagacgcc ctgaccgcga aatccgaagg
     2461 cagttcccct tctttggcaa agtggcgctc cttgaccccg cagtgcatct ctacccagcc
     2521 cgcgggcagg gaaagccgct tttccagctc ctcgc
//
LOCUS       DATDUB010000188         3633 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_977062, whole genome shotgun sequence.
ACCESSION   DATDUB010000188 DATDUB010000000
VERSION     DATDUB010000188.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3633)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3633)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3633
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_977062"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..524
                     /gene="hisH"
                     /locus_tag="VJA84_03740"
     CDS             <1..524
                     /gene="hisH"
                     /locus_tag="VJA84_03740"
                     /EC_number="2.4.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015326678.1"
                     /note="with HisF IGPS catalyzes the conversion of
                     phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide
                     ribonucleotide phosphate and glutamine to
                     imidazole-glycerol phosphate,
                     5-aminoimidazol-4-carboxamide ribonucleotide, and
                     glutamate in histidine biosynthesis; the HisH subunit
                     provides the glutamine amidotransferase activity that
                     produces the ammonia necessary to HisF for the synthesis
                     of imidazole-glycerol phosphate and
                     5-aminoimidazol-4-carboxamide ribonucleotide; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HLD41271.1"
                     /translation="PGVGAIKEAMRELRRLRLIKVIKDNILKKPFLGICLGLQLLFSE
                     SEEGGKVKGLGIFPGKVKRFPDKLKVPHMGWNQIKIKNQKSPAKAGSRRMLSNRREKV
                     KILKNTTDNAYFYFCHSYYVTPKDKRLIAATTDYGREFVSAIARDNLFACQFHPEKSQ
                     KAGLALLSNFVKL"
     gene            524..1246
                     /gene="hisA"
                     /locus_tag="VJA84_03745"
     CDS             524..1246
                     /gene="hisA"
                     /locus_tag="VJA84_03745"
                     /EC_number="5.3.1.16"
                     /inference="COORDINATES: protein motif:HMM:TIGR00007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003949 -
                     1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase"
                     /protein_id="HLD41272.1"
                     /translation="MLIIPAIDLKNREVVRYTKGRLNKKVYSDDPVSIALEWQRQGAR
                     LLHLVDLDGAIHGRQKNIRVIREIIKAIKIPAQVGGGIRSLEAARKTLDCGAKRVILG
                     TRAIEDTNFLKKAITGFGRDKIVLVLDASADKIGLQGWRKSFKIGFSAFLGNLKQTRL
                     KTIIYTDISRDGTLGGIDLKNIKRVLTASPFKVIVSGGISSLADIRKLRRLKNPNLEG
                     IIIGKALYENRFSLKEAIEAGK"
     gene            1459..1980
                     /locus_tag="VJA84_03750"
     CDS             1459..1980
                     /locus_tag="VJA84_03750"
                     /inference="COORDINATES: protein motif:HMM:NF013625.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-binding protein"
                     /protein_id="HLD41273.1"
                     /translation="MRNFAIITAILFLSGCATTIAPNELDDLRRQINVMEGRVQEKDR
                     QIEQLQETMDKVKTDSGQMAELQSRIEDRNKELTSLQEALDRESREKALLAERIDVLM
                     GQYKRPESTNYTKQIQIALKNAGFDPGAIDGVMGSRTRKAIRYFQKANNLPITGKIDK
                     FTWAKLRKYLHVK"
     gene            1980..2771
                     /gene="hisF"
                     /locus_tag="VJA84_03755"
     CDS             1980..2771
                     /gene="hisF"
                     /locus_tag="VJA84_03755"
                     /EC_number="4.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006569519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000107 - imidazoleglycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HLD41274.1"
                     /translation="MLTKRIIPCLDLKDGRVVKGVKFLDLQDAGDPVEIAKRYETEEA
                     DELVFLDITASAQNRGIILDVVRRAAENVFMPLTVGGGIRDLSDIRGLLNAGSDKVSL
                     NTAAVRNPRLIRDASSKFGSQCIVVAIDAKKKLKGTQEHKSTRAREELEVYINGGRTP
                     TGLDAIEWARKAERLGAGEILLTSMDSDGTKNGYDLELTRAVTVAVNIPVIASGGAGK
                     KEDFYAVLTKAGADAALAASLFHYQELTIKEVKNYLKKKGVKVRC"
     gene            2765..3133
                     /gene="hisI"
                     /locus_tag="VJA84_03760"
     CDS             2765..3133
                     /gene="hisI"
                     /locus_tag="VJA84_03760"
                     /EC_number="3.5.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012620382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004635 - phosphoribosyl-AMP
                     cyclohydrolase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyl-AMP cyclohydrolase"
                     /protein_id="HLD41275.1"
                     /translation="MLNLKSLEFKFDPHGLIPAIIQDYRTKEVLMLAYMNEESIKRTL
                     KLGKTCFWSRSRKVYWVKGETSGHFQFVKSLNYDCDQDALLIKVRQIGPACHTGNKSC
                     FYRKITINNKKVTRSIAKGR"
     gene            3298..>3633
                     /locus_tag="VJA84_03765"
     CDS             3298..>3633
                     /locus_tag="VJA84_03765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020258038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I"
                     /protein_id="HLD41276.1"
                     /translation="MFYPSKKEFIKLSKKGNLIPVYKEIPADMETPVSAFLKLSQGSP
                     YACLLESVEGQEKIARFSFIGHNPSSIIAIKADEFRILRRGKENCFKTTKIIRAQDPL
                     SELRRFMSGY"
BASE COUNT         1140 a          774 c          900 g          819 t
ORIGIN      
        1 tgcccggggt aggggcgatc aaagaggcga tgcgggaatt aagaagatta aggttgatta
       61 aggtaatcaa agataatata cttaaaaagc cttttttggg aatctgctta gggctgcagc
      121 tgctctttag cgagagcgaa gaaggcggca aggtgaaagg gctgggcata ttccccggga
      181 aagtcaagcg cttcccagac aagctaaagg tcccgcatat gggctggaat cagataaaaa
      241 tcaaaaatca aaaatctccc gcaaaagcgg gatcccgccg aatgttaagc aataggcggg
      301 aaaaagtcaa aattttaaaa aataccaccg acaatgctta tttttatttc tgtcattcgt
      361 attatgttac gcctaaagac aaaaggctga tcgccgctac caccgattac gggagagagt
      421 ttgtttcggc aatagccaga gacaatctct ttgcctgcca gttccaccct gaaaagagcc
      481 agaaagctgg attagcgttg ttaagcaatt tcgtcaaact ataatgctta taattccggc
      541 catagattta aaaaacaggg aagttgtcag gtatacaaaa ggcagactga ataagaaggt
      601 ttattctgat gaccctgtca gcattgcgtt agaatggcaa aggcaggggg caaggctttt
      661 gcacctggtg gatttagacg gggcaataca cggccggcag aaaaacatcc gcgtaatcag
      721 ggagatcata aaagcgataa aaatacccgc ccaagtcggc ggaggcatcc gcagccttga
      781 ggccgcgaga aagactcttg actgcggggc aaaaagggta atcctgggga ccagggccat
      841 agaggataca aatttcctta aaaaagcgat aaccggtttt ggcagggata aaattgtctt
      901 agtcctggat gccagcgcag ataagatagg cttgcaagga tggagaaaat catttaaaat
      961 aggtttttcc gcgtttttag ggaatttaaa acaaacccgc cttaaaacca taatctatac
     1021 cgacatcagc cgtgacggga cattaggcgg aatagatttg aagaacatca aaagggtttt
     1081 aactgccagc ccttttaagg tgattgtttc cggaggcatc tcttcgcttg ccgatataag
     1141 aaaattgcgc cggcttaaaa atcccaatct ggaagggata attatcggca aggccctgta
     1201 tgagaacaga ttttctctga aagaagcgat agaagcagga aaataaaaat aactaagggt
     1261 ctatagtcga tggtctatgg tcaatagaaa aatacaaaaa acatcagctc ttaactatag
     1321 actattggct ataggccgcc aggccatggt ttggcttcct ataagccaga tggcgatggt
     1381 gcggcttcca atagccgcag ccatagccaa agccatcgac cctttaatgt taaaccttta
     1441 taaaggagga ataaggcaat gagaaacttc gcgataatta cagccatatt atttctatcc
     1501 gggtgcgcca ctactatcgc cccaaacgag ctggatgacc tgcgccggca aatcaatgtt
     1561 atggaaggcc gggttcagga aaaagaccgc cagatagagc aattgcaaga aactatggat
     1621 aaggtaaaaa ccgattccgg gcagatggct gaattgcaaa gccggataga agacaggaat
     1681 aaagagctca cctccctgca agaggcttta gatagagaat ccagggaaaa ggccttgctg
     1741 gcagagagga ttgatgtctt aatgggccaa tacaaacgcc cggaatcaac caattatacc
     1801 aagcagatac agattgccct taaaaatgcc gggtttgatc cgggggctat tgacggggtt
     1861 atgggcagcc gcacccgcaa ggccatccgc tatttccaga aggccaacaa cctgccgatt
     1921 accggcaaga ttgataagtt tacctgggct aaattaagaa aatatttgca tgtaaaataa
     1981 tgctgactaa gaggattatc ccctgcttgg acctaaaaga cggcagggtg gtaaaagggg
     2041 tcaagttcct tgacctccaa gatgccggcg acccggtaga aatagccaaa agatacgaaa
     2101 ctgaagaagc ggatgagttg gtcttcttag acatcaccgc cagcgcccag aaccggggga
     2161 taatcttgga tgtggtccgg cgcgccgcgg aaaatgtctt tatgcctttg accgtaggcg
     2221 gaggcatccg ggatttgtcc gatatccgcg gcctgctcaa tgccgggtca gataaggtat
     2281 ctttgaacac cgcggcagta agaaatcccc ggttgattag agatgcctca tctaaattcg
     2341 gaagccagtg cattgtggta gccatagacg caaaaaagaa attaaagggc acacaagagc
     2401 acaagagcac aagagcacga gaagagttgg aggtatatat caacggggga aggacgccga
     2461 ctggtttaga cgcgattgaa tgggcaagga aggcggaaag attaggggcc ggagaaatac
     2521 tcttaaccag tatggattct gacgggacta aaaacggcta tgacctggaa ttaacccggg
     2581 cggtaacagt tgccgtaaac attccggtaa tcgcttccgg aggcgcgggg aaaaaagagg
     2641 atttttacgc ggtattaact aaggccggcg ctgatgccgc cttagccgcc tcattatttc
     2701 actatcaaga gttaaccata aaagaagtga aaaactatct caagaaaaaa ggagtaaaag
     2761 taagatgctg aatttaaagt ctcttgaatt taaatttgac ccgcacggcc tcatcccggc
     2821 cataatccag gattacagaa ccaaggaagt gttgatgctg gcctatatga atgaggaatc
     2881 cattaaaagg acattgaaac tgggcaaaac ctgtttttgg tcgcgctccc gtaaggttta
     2941 ctgggtcaag ggcgagacct ccgggcattt tcagtttgtc aaaagcctaa attatgactg
     3001 tgaccaggac gccctcttga taaaagtaag gcaaatcggc ccggcctgtc acaccgggaa
     3061 caaatcatgc ttttatagaa aaataacaat caacaataag aaagtcacaa ggtctatcgc
     3121 taaggggcga tagtctatag tcgatagcct gcgagttaag agccattttt ttattgacca
     3181 tagaccattg actattggcc atcaggccat ggtttggctt ccgataagcc agagggctat
     3241 ggtgcggctt ccgatagccg cagccataag ccaaagccat aaaccccttt tttttctatg
     3301 ttctatcctt caaaaaaaga attcataaag ctctctaaga aaggcaacct gatcccggtt
     3361 tacaaggaaa ttcccgcaga catggaaacc ccggtttcgg ctttccttaa attatcccaa
     3421 ggcagcccct atgcctgcct cttagaatca gtggaaggcc aggaaaagat tgcccgtttt
     3481 tcttttatcg ggcacaatcc gagctccata atcgcgatta aggccgatga attcaggata
     3541 ttaagacggg ggaaagaaaa ctgttttaaa acaactaaga ttatccgcgc ccaagaccct
     3601 ctatccgagc taaggcgctt tatgtccggg tat
//
LOCUS       DATDUB010000189         3258 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1328140, whole genome shotgun sequence.
ACCESSION   DATDUB010000189 DATDUB010000000
VERSION     DATDUB010000189.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3258)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3258)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3258
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1328140"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..443
                     /locus_tag="VJA84_03770"
     CDS             <1..443
                     /locus_tag="VJA84_03770"
                     /inference="COORDINATES: protein motif:HMM:NF024583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="GAF and ANTAR domain-containing protein"
                     /protein_id="HLD41277.1"
                     /translation="EEKRAISIYNVIQEKEYKYKDIARKNGLVSLLCVPLMVKGRVIG
                     VINLYTSKPHKFTKNEAHMLTAVANQAAMVIENTELMVRTRVIQEELETRKLVEKAKG
                     ILMKEQGLSEADAYRTIQKYSMDSRKSMRQIAEAVITAQAVRGK"
     gene            443..715
                     /locus_tag="VJA84_03775"
     CDS             443..715
                     /locus_tag="VJA84_03775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007222854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TMEM165/GDT1 family protein"
                     /protein_id="HLD41278.1"
                     /translation="MDWRIFFTAFGTIFLAELADKTEMAVLSLTAKTKSPWPIFWGAM
                     LAFGAATLLAVIFGEAIGKFVPENILRLVSAGIFILIGILTLMGKL"
     gene            717..1334
                     /locus_tag="VJA84_03780"
     CDS             717..1334
                     /locus_tag="VJA84_03780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015739661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2148 domain-containing protein"
                     /protein_id="HLD41279.1"
                     /translation="MQEKDAVREAAKIIGISIRTAPKSAGADDILYKILSDAQKSALV
                     CELKKTASLLIKENNDERIKKAVELDWHSDTDALDKSDCVIIIGVRGKKPLGFNCGGC
                     GFKGCQEFLGAKPPQTIFMPGPFCMFKLLDLGIALSSAAKTASSLNIDNRIMYRVGLA
                     AYSLGLLEDCNPVIGLPLSASGKNIFFDRKEKMEAKELWKEIKAQ"
     gene            1365..1850
                     /locus_tag="VJA84_03785"
     CDS             1365..1850
                     /locus_tag="VJA84_03785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007290301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HLD41280.1"
                     /translation="MDEILEILEKDARLNPEEIAKMTKRDAGKVKQAIRKYEKEGVIL
                     KYKAVINKELIREEDSDVRALIEVNIVPQKDLGFDKIAERIYSFPEVTSCYLISGTYD
                     LLVVVEGKNMRTVSNFVAEKLSCLENVRGTATHFLLRKYKEDGVILKHREENKRIAIS
                     Y"
     gene            1991..3145
                     /locus_tag="VJA84_03790"
     CDS             1991..3145
                     /locus_tag="VJA84_03790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010631706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HLD41281.1"
                     /translation="MKNYISKVVQDLQPSGIRAFFDLVLGMKEVISLGVGEPDFVTPW
                     NVRESAIFSLEQGYTSYTSNKGMLKIRLQICRFLKGHYGIEYDPDDEILITVGVSEAL
                     DLTMRAILNPGDEVLIPEPCYVSYGPVTALAGGRPVYISTAKTNFKLTAEDIERHYNK
                     NTKAIIFNYPSNPTGASYSRKELEEIKKEVLRHKLIMISDEVYDELTYDFKHTPFVSL
                     SGSRENTIYLNGFSKSYAMTGWRVGYACGPKEIIAAMTKIHQYTIMCVSITSQIAACE
                     AMASGRKSVEEMKREYCRRREFITGELNRLGLNCIYPQGAFYAFASIKNTGLSSMDFC
                     QGLLKEQKTAVVPGTAFGPSGEGYIRISYASSLDNLKEAIIRIEKFLKGI"
BASE COUNT          893 a          655 c          928 g          782 t
ORIGIN      
        1 cagaggagaa gcgggcaatc agcatttata atgttatcca ggagaaggag tataagtata
       61 aagacatcgc ccgcaagaac ggcctggtct ccctgctctg cgttccgcta atggtaaagg
      121 ggagggtgat cggggtgata aatctctata cctccaagcc gcataagttc accaaaaacg
      181 aggcgcatat gttgaccgcg gtggctaacc aggcggcaat ggtgattgaa aatactgaat
      241 tgatggtcag gacccgggtt atccaggaag agttggagac ccgcaagttg gtggaaaagg
      301 caaaagggat tttaatgaag gaacagggct tgtccgaagc cgatgcctac cggaccattc
      361 agaaatacag tatggattcc cgcaaatcaa tgcgccagat tgccgaggcg gtgattaccg
      421 cccaggcggt gagagggaaa taatggattg gagaatcttt tttaccgctt tcgggaccat
      481 atttttggcg gagcttgcgg ataagaccga gatggcggta ttgagcctca cggccaagac
      541 caaatccccc tggccgatat tctggggggc aatgctggcc tttggggcgg ctaccttgct
      601 ggctgtaatt tttggcgagg ctataggtaa attcgttccg gaaaatatct tgcgcctggt
      661 aagcgcgggg atattcatcc ttatcgggat attgacctta atggggaagc tttaggatgc
      721 aagaaaaaga tgcggtgaga gaggcggcca agattatcgg catatccatc cgcaccgcgc
      781 ctaagagcgc cggagcggac gatattttgt ataaaatatt aagcgatgcc cagaagtcag
      841 ccttggtttg cgagctcaaa aagaccgcct ctttgctgat taaggaaaac aatgatgaaa
      901 ggataaagaa ggccgtggaa ttagactggc acagcgatac cgacgccctg gataagtcgg
      961 attgcgttat tattataggg gtcaggggga agaagccgtt aggttttaac tgcggcggat
     1021 gcggatttaa gggttgtcag gagttcctgg gggcaaagcc gccccagact atttttatgc
     1081 cgggtccgtt ttgtatgttt aaactcctgg atctaggaat tgccctctcc agcgcggcca
     1141 agaccgcctc ttccttaaat attgataatc ggattatgta ccgggtgggg cttgccgcct
     1201 attcgctggg gttattggaa gattgcaatc cggtaatagg gcttcccctt tccgccagcg
     1261 gcaagaacat cttttttgac cgcaaggaga agatggaggc gaaggagttg tggaaggaaa
     1321 taaaggcgca atagattagt gagaaaacaa ggagagttga taaaatggat gagatactgg
     1381 agattttaga gaaagacgcc cggctcaatc cggaagagat tgccaaaatg actaagagag
     1441 atgccggcaa ggtgaagcag gcgataagga aatatgagaa agagggggta atcttaaaat
     1501 acaaggcggt aatcaataag gagcttatcc gcgaggagga ttcggatgtg cgcgcgctta
     1561 ttgaggtaaa tattgtgccg cagaaggact taggctttga caagattgcc gagaggattt
     1621 attcctttcc ggaggttacc agttgttatc tcatttccgg gacatatgat ttgctggtgg
     1681 tggtggaggg taagaatatg cgcaccgtat caaactttgt tgccgaaaaa ttatcctgct
     1741 tagagaatgt gcgggggaca gccacccact tcttgcttag gaaatacaaa gaagacgggg
     1801 tgattttaaa gcatagggaa gagaataaga ggatagcaat atcgtattaa atccggcctg
     1861 cgtcaggtat ttcgtgctca aacatcctcg gcgcctctct gaatagttac attgttgaat
     1921 agcgcctgcg gaactgcgcg cggaacacct gccgcagtcc gttttaatga gttgatatgg
     1981 agatttttag gtgaagaatt atatttccaa agtagttcag gacttacagc cttcggggat
     2041 aagggcgttt tttgacctgg tcctggggat gaaggaggtt atctccctgg gggtggggga
     2101 gccggatttt gtcactccct ggaatgtccg ggagtcggca atcttttccc tggagcaggg
     2161 ctataccagc tatacctcca acaaggggat gctcaagatt aggcttcaaa tctgccgttt
     2221 cctgaaaggc cattacggca tagagtatga cccggatgat gaaatcctga ttaccgtggg
     2281 ggtaagcgag gccctggacc tgacgatgag ggcaatcctt aatcctgggg atgaggtatt
     2341 gatccccgag ccttgctatg tctcttacgg cccggtaact gccctggccg gggggaggcc
     2401 ggtttacata tccaccgcta aaaccaattt taagcttacg gctgaagata ttgagcggca
     2461 ttacaataag aataccaagg ccataatctt taattatcct tccaacccta ccggcgcctc
     2521 ttatagccgc aaggaattgg aggagataaa gaaagaggtc ttaaggcaca aactgataat
     2581 gatcagcgat gaggtctatg atgagctgac ttatgatttc aagcataccc cttttgtcag
     2641 cttgagcggt tccagggaga ataccattta cttgaacgga ttttccaaga gctacgccat
     2701 gaccggctgg cgggtgggtt atgcctgcgg ccccaaagag ataatcgcgg caatgaccaa
     2761 gatccatcag tatacgatta tgtgcgtgtc tattaccagc cagattgccg cctgtgaggc
     2821 catggcttca gggaggaaat cggtagagga aatgaaacgc gagtattgcc gccggaggga
     2881 atttataact ggggaattaa accgtttagg cttaaactgc atatacccgc aaggggcgtt
     2941 ttacgccttt gcctcaataa agaataccgg cttgagctca atggactttt gtcaggggtt
     3001 gttaaaagag cagaaaaccg cggtagtccc ggggactgcc tttggaccgt caggcgaagg
     3061 ctatatccgg atttcctatg cctccagctt agataacctg aaagaggcga taatcaggat
     3121 agagaagttt ttgaaaggga tatagaaatg ttagaagaaa agataatgga agattataag
     3181 aaggcgatga aggagaagga ggcgcttaag gtttcggttt taagtttctt gcgcgcggaa
     3241 ttaaagaacg cggccata
//
LOCUS       DATDUB010000190         2464 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1658297, whole genome shotgun sequence.
ACCESSION   DATDUB010000190 DATDUB010000000
VERSION     DATDUB010000190.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2464)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2464)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2464
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1658297"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..322
                     /locus_tag="VJA84_03795"
     CDS             <1..322
                     /locus_tag="VJA84_03795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41282.1"
                     /translation="MTAVEDLIKKSALQVSEIKNLRPDVIAKKKGIVVNLRLDLRSET
                     NIPELTERLQELVKGKIRDLLTGIDKPVIVKIHVAKIVIGEDRKKSEPQEKEPTIPFY
                     GYGR"
     gene            341..1372
                     /locus_tag="VJA84_03800"
     CDS             341..1372
                     /locus_tag="VJA84_03800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014407058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphofructokinase"
                     /protein_id="HLD41283.1"
                     /translation="MAAKIGILTGGGDCPGLNPVIRAVVRKAFNEGYEVVGIKNGWKG
                     MLEKDTMALDMDTVSGILPKGGTILGTSRTNPYKKEGGVQKAISNFKELGLHALIAVG
                     GEDTIGVAYKLYKEGLNVIGVPKTIDNDLSATDYTFGFDTALNIATECIDRLHTTAES
                     HHRIIVAEVMGRHAGWIALEAGLAGGADVILIPEVPIDMEEVCALIKKRHERGKTFSI
                     VVVAEGAEFKKGSMVLQEQKLDEFGHVRLGGIGEILAKEIEKRTGYETRVSVLGHIQR
                     GGSPTAFDRVLGTRFGVKAVELVKENKFGQMCALSGNKIISVPLEKAIGALKTVDPEY
                     YDLAKVFFG"
     gene            1388..1957
                     /locus_tag="VJA84_03805"
     CDS             1388..1957
                     /locus_tag="VJA84_03805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010966335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-sedoheptulose 7-phosphate isomerase"
                     /protein_id="HLD41284.1"
                     /translation="MRDRIIDIINESIHIKEDILHNHIENIMKASKMIIACYKAKGKV
                     LTFGNGGSAADAQHIAAEFMGRFQKDRAPLASIALTTNTSILTALGNDYGYETIFTRQ
                     IEALGNSRDIAIGISTSGKARNVLLAMKKAKEMGLKTICLTGGSGGELLKYSDIALII
                     PSSITARIQEAHITIGHIICELVESELFK"
     gene            1941..2420
                     /gene="rfaE2"
                     /locus_tag="VJA84_03810"
     CDS             1941..2420
                     /gene="rfaE2"
                     /locus_tag="VJA84_03810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013682461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-beta-D-manno-heptose 1-phosphate
                     adenylyltransferase"
                     /protein_id="HLD41285.1"
                     /translation="MNCLNKIHTQARLKGIIDKLRKQGKKIAFTNGCFDILHYGHIKY
                     LQDAKLASDILVLGLNSDASVKRIKGHKRPANKQLDRSRVLAALSCVDYITVFNQDNP
                     LKLIKLLRPDILIKGGDWEADKIIGAEFVKSYGGRVLTIPYLKGYSTTGLIARLKDG"
BASE COUNT          731 a          572 c          627 g          534 t
ORIGIN      
        1 gatgactgcc gtggaggacc tgattaaaaa atccgccctg caggtttccg aaatcaaaaa
       61 tctgcgcccg gatgtcattg ccaagaaaaa aggcatcgtg gtcaatttaa ggctagacct
      121 gcgttcagag accaatatcc cggagctcac cgaacggctc caggaattag taaaggggaa
      181 gatccgcgat ctgcttaccg gcattgataa accggttatc gtcaaaatcc atgtggctaa
      241 gatagtcata ggcgaagaca gaaaaaaatc cgaaccccag gaaaaagagc cgaccatacc
      301 attttatgga tacggcaggt aataggagga aatttaaaat atggcggcaa agattggtat
      361 cttaaccgga ggcggagact gccccggatt gaacccggtg atccgggcgg tagtgcgcaa
      421 ggcctttaat gaaggctatg aagttgtcgg gataaaaaac ggatggaagg gaatgctgga
      481 aaaagacaca atggccctgg acatggatac tgtttccggg atactcccta aaggcggcac
      541 tatcttaggc accagccgga ccaatcctta taaaaaagag ggcggggtcc aaaaggcaat
      601 ctccaatttc aaagaattag gccttcacgc ccttattgcc gtcgggggag aagacaccat
      661 aggagtggct tacaaattat acaaggaagg cttaaatgtc atcggtgtgc ccaaaactat
      721 agataacgac ctgtccgcca cggattacac cttcggcttt gacaccgcct taaatattgc
      781 taccgaatgc attgaccgtc tgcataccac cgcggaaagc catcaccgga ttatcgtggc
      841 tgaagtaatg ggccggcatg ccggatggat tgccctggaa gccgggcttg ccggaggggc
      901 ggatgtgatc cttattccgg aagtccccat tgatatggaa gaggtttgcg ccttaatcaa
      961 aaaaaggcac gaaagaggca agaccttcag catcgtggta gtcgccgaag gcgcggaatt
     1021 taaaaaaggc tctatggtcc tgcaggaaca aaaactggat gaattcggcc atgtgcgctt
     1081 aggcggcatc ggtgaaatcc tggccaagga aatagaaaag cgcaccggct atgaaacccg
     1141 ggtctcggtg ctgggacata tccagcgggg aggttcgcca accgcttttg accgggtctt
     1201 aggcacccgc ttcggggtaa aggcggtgga attggtcaaa gaaaataaat tcggccagat
     1261 gtgcgccctt tccgggaata aaatcatctc ggtccccctg gaaaaagcca tcggcgcctt
     1321 aaaaaccgtt gatccggaat attacgatct cgccaaagta ttctttggtt agggaaaggc
     1381 aaataaaatg cgcgacagga ttattgacat aatcaatgaa tccatacaca tcaaagaaga
     1441 catcctgcat aatcatattg aaaatattat gaaggcctcc aagatgatta ttgcctgcta
     1501 taaggctaaa ggcaaggtcc tgactttcgg aaacggcggt tccgccgccg acgcccagca
     1561 tatcgccgcg gaatttatgg gccgcttcca aaaggaccgc gcccccctgg cctcaatagc
     1621 cctgactact aacacctcaa tccttaccgc cttaggcaat gactacggat atgaaaccat
     1681 atttaccagg cagatagagg ccctggggaa ttccagagat atcgctatcg gcatctccac
     1741 cagcggaaag gccaggaatg tccttctggc aatgaaaaag gccaaagaga tggggcttaa
     1801 aactatctgc cttaccggcg gaagcggagg ggaactactt aaatattcgg atatcgcgct
     1861 tattataccc tcttcaatta ccgccagaat tcaggaagcc catatcacta tcgggcatat
     1921 catctgcgag ttggtagaaa gtgaactgtt taaataagat acatacccag gcccggctta
     1981 agggcattat tgataaatta agaaagcaag gcaagaaaat tgcctttacc aacggttgtt
     2041 ttgacatcct gcactacggg catataaaat acctgcagga tgccaagctc gccagcgata
     2101 ttttggtgct gggcctaaac agcgatgcct cggtaaaaag gataaaagga cataaacggc
     2161 cggcaaacaa acagcttgac cgctccaggg tcttagccgc tttatcctgc gtagattata
     2221 taaccgtatt taaccaggac aacccgctta agctgataaa attgctaagg ccggatatcc
     2281 tgattaaagg aggggactgg gaagcggaca aaattatcgg cgcggaattt gtcaagagtt
     2341 atggggggcg ggtcttgacc ataccttatt taaaaggcta ttccactacc ggtttgattg
     2401 ccaggcttaa ggatggataa aagggtcttg cgcgttattg acgccaactt aaaccggctc
     2461 ttag
//
LOCUS       DATDUB010000191         2655 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_134428, whole genome shotgun sequence.
ACCESSION   DATDUB010000191 DATDUB010000000
VERSION     DATDUB010000191.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2655)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2655)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2655
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_134428"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            161..706
                     /locus_tag="VJA84_03815"
     CDS             161..706
                     /locus_tag="VJA84_03815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013413341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016903 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:acceptor oxidoreductase family
                     protein"
                     /protein_id="HLD41286.1"
                     /translation="MKEIRIHARAGQGAITTATILGYAYFLEGKYPYAFPNFGAARMG
                     APMNAFVRVDDKPVRLRSQIYEPDYLLVSDVTLLRGFNCFKGFRDKGVAIINAHVDFK
                     APEVKSGQKVYVVPANEIAMETIGRPIGNTALLGAYVAATNDIKLESLIESIKHRFSG
                     KSAEQNIQAVNKGYQYIKDKG"
     gene            708..962
                     /locus_tag="VJA84_03820"
     CDS             708..962
                     /locus_tag="VJA84_03820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007221273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HLD41287.1"
                     /translation="MFGPLISKAITAQANKTGSWRVDVKPKFLQKDCIACKMCVLICP
                     EACVTGEGKNTYICDYDFCKGCGNCAAICPKKDIEMVKEE"
     gene            1061..2236
                     /gene="porA"
                     /locus_tag="VJA84_03825"
     CDS             1061..2236
                     /gene="porA"
                     /locus_tag="VJA84_03825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012901359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate ferredoxin oxidoreductase"
                     /protein_id="HLD41288.1"
                     /translation="MKKLLEGSQAVADAVRLCKPGVISAYPITPQTHIVEELAAMVAS
                     GELNSQFVNVESEHSAASVVLGSVAAGVRSFTATSSQGLLLMAEVVFNIAGMRLPVVM
                     TCANRAVSAPLNIWNDHQDAITVRDSGWVQMHAENIQEALDLHIQAYRIAEGPKIMLP
                     VIVNMDGFILTHGLEVVDLPDQEQVDRFLPAYKPLFKLDVENPLTLGPLVDPDYYMET
                     RFAMQETHKDVLKLIPLIKDEFEKVFNRPTGGLVEGYRIDDAEKVIVAMGSVCGTIKD
                     VVDNLRSKGKKVGLLKLVTYRPFPAEAIYRALKDIPRVAVLEKAISIGSYSPLLSEVR
                     SVFSGKKKSPVTSGFVIGLGGRDITIDSIKEVFKNLTAKTVSEQFIDLKAELLEESI"
     gene            2236..>2655
                     /locus_tag="VJA84_03830"
     CDS             2236..>2655
                     /locus_tag="VJA84_03830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014866591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
                     /protein_id="HLD41289.1"
                     /translation="MEKGSQHLFTAGHTACSGCGQAIAARLVVDIAGKSTMIANNTGC
                     LEVFSTKYPESAWGVPWIHSLFENAAAVASGIEAALKYLGVKDKINVIAQAGDGGTAD
                     IGLQALSGMWERGHDILSICYDNEAYMNTGVQRSGLTP"
BASE COUNT          670 a          620 c          731 g          634 t
ORIGIN      
        1 atggaaaaga tattcttgcg caaaaacagc aaaaaaacct tgcaaagttc aaattgagtg
       61 gtagaataaa aactccgttt gtttttaccc cgttagaaag cctcggagtt aaagtctagt
      121 cctttctaac ggggtttatc cagtaaaacc agattaaaag atgaaagaaa tacgcataca
      181 cgcccgggcc ggacaagggg caatcaccac cgcgactatt ttaggctacg cctattttct
      241 ggaaggcaaa tatccttacg cctttcccaa tttcggcgcc gcccggatgg gcgccccgat
      301 gaacgccttt gtccgggtgg atgataagcc ggtgcgcctg cgctcgcaga tatacgagcc
      361 ggactacctg ttggtttccg atgtcaccct cctgcgcggc tttaattgtt tcaagggttt
      421 ccgggacaag ggcgtggcca taatcaacgc ccatgttgat ttcaaggccc cggaggtaaa
      481 atcgggacaa aaggtgtatg tggtcccggc caatgagatt gccatggaaa ctatcggccg
      541 gccaatcggc aataccgcgc tcttgggggc gtatgtggcg gcaactaatg atatcaagct
      601 tgagtcttta attgagtcta taaaacaccg tttttcgggt aaatccgcgg agcagaatat
      661 ccaggccgta aataagggat accagtatat aaaggataag ggctaaaatg tttggaccgt
      721 tgatttctaa agccatcacc gctcaagcca ataagaccgg ctcctggcgg gtggatgtca
      781 agccgaagtt cctgcagaaa gactgcattg cctgcaagat gtgcgtgctg atctgcccgg
      841 aggcctgcgt aaccggcgag ggcaagaata cctatatttg tgactacgat ttctgcaagg
      901 gctgcggcaa ctgcgcggcc atctgcccta aaaaagacat tgagatggta aaggaagaat
      961 agatgaaccc cgcaccttct aaacattcaa agactttaag aatcaaaaat ataggatgga
     1021 taagatacgg attaactatg aataacaaag aaggtgcggg gtgaagaagc ttttggaagg
     1081 ttctcaagcg gtagccgacg cggtccggtt atgtaagccc ggggtaatct cggcctatcc
     1141 cattaccccc cagacccata ttgtggagga actggcggca atggtggctt ctggtgagtt
     1201 gaattcccaa tttgtcaatg tggagagcga acattcggca gccagcgtgg tcttaggttc
     1261 agtggcagcc ggggtgcgct cttttaccgc caccagctcc caaggcctgc ttttaatggc
     1321 cgaggtggtc tttaatatcg ccgggatgcg ccttccggtg gtaatgacct gcgctaaccg
     1381 ggcggtttcc gctcccttaa atatctggaa cgaccatcag gatgctatta cggtgcggga
     1441 ctccggctgg gtgcagatgc atgccgagaa tatccaggag gccctggacc tgcatatcca
     1501 ggcctaccgc atagccgaag gccccaagat aatgcttccg gtgatagtga atatggacgg
     1561 ctttatcctt acccacggtc tggaggtagt tgatcttcct gatcaggaac aggtggacag
     1621 attcctgccc gcgtataagc ctttgtttaa attagatgtg gagaatcctt tgactttagg
     1681 cccgctggtt gacccggatt attatatgga aacccgtttc gcgatgcagg aaacccataa
     1741 agatgtttta aaactgatac ctttgattaa ggacgagttt gagaaagtct ttaaccgccc
     1801 taccggcgga ttggttgagg gataccggat agatgacgcc gaaaaggtga tcgtggctat
     1861 gggctcggtc tgcggcacta tcaaggatgt ggtggataac ctgcgttcca agggcaagaa
     1921 ggtcggtttg ttaaagctgg ttacctaccg gccgttcccg gcagaggcca tttaccgggc
     1981 cttaaaagat attccccggg tggcagtgct ggagaaggcg atttccatag gctcttacag
     2041 cccgttatta agcgaggtcc gctcggtatt tagcggcaaa aagaagtccc cggtgaccag
     2101 cggttttgtg attggcttag gcggccggga catcaccatt gattccatca aagaggtttt
     2161 taagaatttg actgccaaga cggtgagcga acaatttatt gatttaaagg cggaattatt
     2221 agaggaaagc atataatgga aaagggatcc cagcatcttt ttaccgccgg gcataccgcc
     2281 tgttccggat gcggccaggc cattgccgcg cgtctggtag tggatattgc cggtaagtct
     2341 acaatgattg ccaataacac cgggtgcctg gaggtctttt ccaccaagta tccggaatcc
     2401 gcctggggag tcccctggat acactctttg tttgaaaacg ccgcggcagt ggcttccggt
     2461 attgaggcgg ctttaaagta tttgggagtt aaggataaga ttaacgtgat tgctcaagcc
     2521 ggcgacggcg gcaccgcgga catcgggttg caggccctat ccgggatgtg ggagcggggc
     2581 cacgatatcc tttctatttg ctatgataac gaggcctata tgaacaccgg cgtgcaaaga
     2641 agcgggctaa cccct
//
LOCUS       DATDUB010000192         3318 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_135729, whole genome shotgun sequence.
ACCESSION   DATDUB010000192 DATDUB010000000
VERSION     DATDUB010000192.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3318)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3318)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3318
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_135729"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            199..597
                     /gene="rpsI"
                     /locus_tag="VJA84_03835"
     CDS             199..597
                     /gene="rpsI"
                     /locus_tag="VJA84_03835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007505892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HLD41290.1"
                     /translation="MEQTTGVFSATGRRKEAVARVRLISGSGNIKVNKRPLEKYFIRE
                     TDRIIIKQPFLATNTQDKYDCLANIVGGGLSGQAGALRLGISRALVSVDPSFKPVLRK
                     GNFLSRDDRMKERKKYGQKGARKRFQWTKR"
     gene            770..1840
                     /gene="argC"
                     /locus_tag="VJA84_03840"
     CDS             770..1840
                     /gene="argC"
                     /locus_tag="VJA84_03840"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007221102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003942 -
                     N-acetyl-gamma-glutamyl-phosphate reductase activity
                     [Evidence IEA];
                     GO_process: GO:0006592 - ornithine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HLD41291.1"
                     /translation="MLRVGIIGIRGYTGEELISILLKHPRVKISYLSARVDKPVPISR
                     IFPRFKNKINTLCQNFNLEQALKSCDLFFLALPHTASMAVAPLLLKENKKVIDLSADY
                     RIRDYKIYESRYKVKHTDIHNIKQAIYGLPELNKARIRKARFIANPGCFPTAAILAIA
                     PLLREKPYALANIIIDAKSGYSGAGRKSDDDHFMLELKDNFKAYKVDIHQHAPEISQE
                     LSAVAGRNIPLTFVPHLLPVERGILETIYIRLSQKASPSILAEKGLATKIGGKSQNII
                     ELYKKFYKNSPFVRIKKEGEYPKLNDVRFTNFCDIGIKVSEDKRWIIIISAIDNLLKG
                     ASGQAVQNMNLMCAFKETEGLL"
     gene            1837..2973
                     /gene="argJ"
                     /locus_tag="VJA84_03845"
     CDS             1837..2973
                     /gene="argJ"
                     /locus_tag="VJA84_03845"
                     /EC_number="2.3.1.1"
                     /EC_number="2.3.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011938690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004358 - glutamate N-acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional glutamate
                     N-acetyltransferase/amino-acid acetyltransferase ArgJ"
                     /protein_id="HLD41292.1"
                     /translation="MKSGLNAICRAKGFKASACACGLKKNNRLDLALIYSEVPALACG
                     MFTRNKIIAHPVKICKERLKSRRAQAILINSGNANCYTGERGRTVAERTTALSAELLK
                     IPRERVLISSTGIIGKVPDFAKIRSAIPGLIHYLNYKDGSRAAEAIMTTDTHPKEWTR
                     KVNIKGTIVTIGAIAKGVGMIAPNMATMLCFITTDAAIEYTALKAALKEAVDKSFNMI
                     TIDGCMSTNDSVIIMANGLAKNKAIKRQDPDFASFNKAISEVCLKLARMIILDAEGAT
                     KFITIEVYGAKNNPQAKQAALAIANSNLFKTAVYGENRNLGRVIAAVGSSGVQVNEDA
                     AVKCSSLKNKFVKVKVDLKTGSGAARVYTSDLTPEYIRINAEYN"
     gene            2977..>3318
                     /gene="argB"
                     /locus_tag="VJA84_03850"
     CDS             2977..>3318
                     /gene="argB"
                     /locus_tag="VJA84_03850"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: protein motif:HMM:NF012899.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003991 - acetylglutamate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA];
                     GO_process: GO:0042450 - arginine biosynthetic process via
                     ornithine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HLD41293.1"
                     /translation="MEEAIRKADVLIEALPYIKDFHRKIMVIKYGGSILGEEKIRSGV
                     MEDIVFLSYMGLCPVLVHGGGPNISERMKSEGLKTEFVDGMRVTDEKTLFVVEEELSK
                     LNALIVSEIQAL"
BASE COUNT          997 a          693 c          830 g          798 t
ORIGIN      
        1 ctctttactt atagtctctt acattattgt cattctgagg cgaagccgaa gaatctcgta
       61 ttttagatcc ttcgtcgcta ccgctcctta aggatgacga agattatcaa aagtaaagaa
      121 gcgttaggga cactacacta gcggaagcgc ggagttaatt tccgctacta ttataaatta
      181 agttaacgga gcactattat ggagcagact acaggagttt tttccgccac cggaaggcgc
      241 aaggaagctg tcgcccgggt aaggttgatt tcaggaagcg ggaatataaa ggtgaataaa
      301 aggcctctgg agaaatattt catccgggag accgatagga ttatcatcaa acagcctttc
      361 ctggccacca atacccagga taaatacgac tgcttagcca atatcgtagg gggcggactt
      421 tccggacagg ccggggcatt aagattaggc atctcccggg cattggtatc ggtagatcct
      481 tcttttaagc ctgttcttag gaaaggtaat ttcttgagcc gcgatgatag gatgaaagag
      541 cgcaagaagt acgggcagaa aggcgcccgc aaacgcttcc agtggactaa gaggtaacaa
      601 cagaactaat aagccagcaa ggcaatggtt tggcttccta tagccaaagc cagaattcag
      661 agctaagaac taagatataa aaaagtcccg ctttttttaa gcgggacttt tttattttac
      721 cgacgaaaaa aacattgatt tcattacggt ttatgatata ttgataccta tgttacgagt
      781 cggaataatc gggataaggg gatataccgg tgaagagcta atcagtattt tattgaagca
      841 cccccgggta aaaataagtt atctctcggc aagggtggat aagcctgtcc ctatttcccg
      901 gatctttccc cggttcaaaa acaagataaa caccctttgt caaaacttca atcttgagca
      961 ggccctaaag tcctgcgatt tattcttctt ggccttgccg cataccgctt caatggcggt
     1021 ggcgccctta ttgcttaaag aaaataaaaa agtcattgat ttaagcgcgg actaccggat
     1081 cagggattat aagatttatg agtcccggta taaggttaag cataccgata tacacaacat
     1141 taaacaggca atttatggcc tccccgagct taataaggcc aggatcagga aggcccgttt
     1201 tatcgccaat cccggttgtt tccctacggc ggcaatcctg gccatagccc ctctcttaag
     1261 agagaagcct tatgctttag ccaatataat cattgacgcc aaaagcggct acagcggggc
     1321 agggagaaag tcagatgatg accattttat gctggagtta aaagataatt tcaaggccta
     1381 caaagtggat atccaccaac atgccccgga aataagccag gaattatccg cggttgccgg
     1441 aagaaatatc ccccttactt ttgtgccgca tttgcttccg gtggaaagag ggattttaga
     1501 gacgatatat atcaggttaa gtcaaaaggc ttcgccaagt attttggcgg aaaaaggcct
     1561 cgccacaaag attggcggaa aaagtcaaaa cataatagag ctttacaaaa aattctataa
     1621 aaattcgccg tttgtaagga taaagaagga aggggaatac cccaagttaa atgatgtgcg
     1681 attcaccaac ttctgcgata tcgggatcaa ggtcagcgaa gataaaaggt ggattattat
     1741 tatttccgcc atagacaact tgcttaaagg ggcgtcgggc caggctgtcc aaaatatgaa
     1801 cctgatgtgc gcttttaagg aaaccgaggg gctcttatga aatcagggct aaacgctata
     1861 tgccgggcaa aggggtttaa ggcctctgcc tgcgcctgcg ggctaaaaaa gaataaccgg
     1921 ttagacctgg ccctgattta ttctgaagtc ccggccctgg cctgcggaat gtttaccagg
     1981 aataagatta ttgcccatcc ggtaaaaatc tgcaaggagc gccttaaaag ccgccgggcc
     2041 caggcaatcc tgatcaatag cggcaatgct aactgttaca ccggagaaag aggcaggacg
     2101 gtagccgaaa gaacgacggc tttaagcgcg gaattgctta agataccaag agagcgggtc
     2161 ttgatatctt ctacagggat tatcggcaag gtcccggatt ttgctaaaat ccgttcggcc
     2221 attccgggtt taatccatta tttaaactat aaagatggct cccgggccgc cgaggcgata
     2281 atgaccaccg atacccatcc taaagagtgg acgcgcaaag tcaatattaa aggaacaatc
     2341 gtaactatag gcgctatagc caaaggggtg gggatgattg cccccaatat ggcgacgatg
     2401 ctttgtttta tcactacgga cgcggcaata gaatacacag ccctgaaggc ggcattaaaa
     2461 gaggcagtgg ataaatcctt taatatgatt accattgatg gctgtatgag cactaatgac
     2521 agcgtgataa ttatggctaa cggtttagct aagaataagg caattaagcg ccaggacccg
     2581 gatttcgcca gctttaacaa ggccatttcg gaggtctgcc tgaaactggc caggatgatt
     2641 atcttagacg cggagggggc tacaaagttc attaccatag aggtatatgg agcaaagaat
     2701 aatccgcaag ctaagcaggc ggctttggcc atagccaatt ccaatctttt taaaaccgcg
     2761 gtctacggag aaaaccggaa cttgggccgg gtgattgcgg cggtgggctc gtcaggcgtc
     2821 caggtaaatg aagatgcggc tgttaaatgt tcatcgttaa agaataaatt cgtaaaagta
     2881 aaagtggatc taaaaaccgg ttccggagca gccagggtct atacctcgga tctgaccccg
     2941 gaatacatca ggataaacgc ggagtataat taaaatatgg aagaagccat tagaaaagcg
     3001 gatgtgttaa ttgaggccct gccttatatc aaggattttc accgtaagat tatggtgata
     3061 aaatacgggg gcagtatcct gggagaagaa aagatacgct ccggggtcat ggaagatatt
     3121 gtcttcttaa gctatatggg gctctgcccg gtgctggtcc acgggggcgg gccgaacatc
     3181 tccgaaagga tgaagtccga agggttaaaa accgagtttg tggacgggat gcgggttacc
     3241 gatgagaaaa ccctattcgt agttgaggag gagttaagca aattaaacgc gcttatcgtt
     3301 tcagaaatcc aggccttg
//
LOCUS       DATDUB010000193         2483 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_2164512, whole genome shotgun sequence.
ACCESSION   DATDUB010000193 DATDUB010000000
VERSION     DATDUB010000193.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2483)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2483)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2483
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2164512"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..366)
                     /locus_tag="VJA84_03855"
     CDS             complement(<1..366)
                     /locus_tag="VJA84_03855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015286526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosine-specific kinase"
                     /protein_id="HLD41294.1"
                     /translation="MVEIKSVVIKKPADVNIIIGQAHFIKSVEDIYEAVVQANPQIRF
                     GLAFSEASGACLVRVEGNDDELKALAKDNCLELACGHIFVLVMRQGFPINILNAVKLV
                     PEVCSIYCATANPLEVIVAQ"
     gene            complement(392..1039)
                     /locus_tag="VJA84_03860"
     CDS             complement(392..1039)
                     /locus_tag="VJA84_03860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HLD41295.1"
                     /translation="MDKDKIIIRSFKKDDRGPLRKLCADTAFMGEPVERFFQDRELFA
                     DWACSYYTDYEPESIFVAEYEGSLCGYIMGSKDELRYRRVSAELSRLFLKRTLGRFLF
                     EPSSRNLLLSLAKSFVSGEFKRPDFSRYYPAHLHINVDKAFRNIGAGAMLMSEFEDYL
                     LGAKVQGERLATISARANRFFQKQGFGLLYRRRVTYFDYLTREEIYLSMYGKILE"
     gene            complement(1039..2355)
                     /locus_tag="VJA84_03865"
     CDS             complement(1039..2355)
                     /locus_tag="VJA84_03865"
                     /EC_number="3.5.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF014625.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019213 - deacetylase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PIG-L family deacetylase"
                     /protein_id="HLD41296.1"
                     /translation="MKRKYPKLIFPLIFLALAFFCPKVFASGISALEPIVKDDRILIL
                     APHPDDEAIACAGVIQEALKKGARIKIVYLTNGDHNQLAFIVYEKRLVFRKGEFIHMG
                     GVRRQEAQKAMAGLGLKPENLIFLGYPDFGTFAMFTRYWASQKPFKSLLTRMTKVPYP
                     ENYSYGRDYTPRNILSDLEDIIENYRPNKIFVSHPADTNGDHRSFNLFLSVAMWNLEG
                     KIPLPKIYAYLVHHTDWPLPRKYHPELDMSAPEDLKDAGRWLSFGLSPEAIERKYNAI
                     GEYKSQTESSAFYLFSFARKNELFQRLPRLKIDSSSTPHPVSSAEYALKDNYLEILCT
                     HPADNHDVSRMRVYVFGYREDIAFGDMPKIFIKVNTNSLIVFDGRKRLEEAKVELLSK
                     GRNALLRIPLALLNNPRQALISARIFSNAAPYAQGIWIQAKLERKK"
     gene            complement(2364..>2483)
                     /locus_tag="VJA84_03870"
     CDS             complement(2364..>2483)
                     /locus_tag="VJA84_03870"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013700.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HLD41297.1"
                     /translation="VRQGDKIGEVGKTGNANHRSIIPHLHFEIRRGNAPLDPM"
BASE COUNT          645 a          656 c          571 g          611 t
ORIGIN      
        1 ctgggccaca atcacctcca aaggattggc tgtggcgcag tagatagaac agacctccgg
       61 gaccagcttt acggcgttca agatatttat gggaaaaccc tggcgcataa ccaggacaaa
      121 gatgtggccg caagcaagct ccaggcagtt gtccttagcc agcgctttaa gctcatcgtc
      181 gttaccctct acgcgcacta agcacgctcc cgaggcctcg gaaaaggcca ggccgaacct
      241 tatctgggga ttggcctgga ctaccgcctc gtagatatcc tccactgact tgataaaatg
      301 cgcctggccg ataataatat tgacatccgc gggtttcttg attaccactg attttatttc
      361 taccatattt cctcgcttcg ctcggaacca atcattctaa aatcttccca tacatactca
      421 aatatatctc ttcccgcgtc agataatcaa aataagtcac cctgcggcgg tataaaaggc
      481 caaagccctg cttctggaaa aaccggtttg ccctcgcgga gatagtagcc aggcgctcac
      541 cctgaacctt agcccccaga agataatcct caaattcaga catcaacatt gcgcccgcgc
      601 cgatattccg aaaagcctta tccacattaa tatgcaggtg cgccggataa taacgggaga
      661 aatccgggcg cttaaattcc cctgatacaa aacttttagc caggcttaag agcaggtttc
      721 tggaggaagg ctcaaacaaa aaccttccta atgtcctctt caggaataac cgggacaact
      781 ccgccgacac cctccggtat cttagctcat ccttactgcc cataatatag ccgcaaaggc
      841 taccctcata ttcagccaca aatatagact ccggctcata atcagtataa tatgagcagg
      901 cccaatcggc aaataattcc ctatcctgga agaatctctc caccggctcg cccataaagg
      961 cggtatccgc gcagagtttt cttaaaggac cgcggtcatc ttttttaaaa gaacggataa
     1021 tgattttatc tttatccatc acttcttgcg ctctaattta gcctggatcc atatgccttg
     1081 agcgtaagga gcggcgttag aaaaaatccg ggcggaaatc agggcctggc gcggattatt
     1141 caacagcgct aaagggatcc tgagcaaggc attccgccct tttgacaaca attccacctt
     1201 tgcctcttcc agccttttcc tgccgtcaaa gacaatcagt gaattggtat ttaccttaat
     1261 gaatatcttg ggcatatcgc caaaggcaat atcctcgcgg tatccgaaaa catatacccg
     1321 cattcgggag acatcgtgat tatccgccgg atgggtgcag agtatctcca ggtaattgtc
     1381 ctttagcgcg tattcggcgc tggatacggg atgcggggtt gaagaagaat ctatcttaag
     1441 cctgggcagt ctctggaaca gctcattttt tctggcaaaa gaaaaaagat aaaacgcgct
     1501 ggactcggtt tggcttttgt attcgccgat ggcgttatat tttctctcta tcgcctccgg
     1561 tgaaaggccg aaagacagcc acctgcccgc gtctttcagg tcctcgggcg ctgacatatc
     1621 caattcagga tgatatttcc ggggaagcgg ccagtcagta tggtgcacca gataagcgta
     1681 tatcttggga agcgggattt tcccctccag gttccacata gcaacgctca agaatagatt
     1741 aaaagaacgg tggtcgccgt tggtatccgc cggatgagag acaaatatct tgttcggcct
     1801 gtaattttct atgatatctt ccaggtcgga caggatattc cgcggggtat agtcccggcc
     1861 gtaagaataa ttttccggat aaggcacctt agtcatccgg gtaagcaggc tcttaaacgg
     1921 cttttgggag gcccaatagc gggtaaacat cgcgaaggtc ccgaaatccg gatagcccag
     1981 gaatatcaaa ttctccggct ttaaccccag tccggccatc gccttttggg cctcctgccg
     2041 gcggaccccg cccatatgga taaattcgcc ttttctgaaa accaagcgct tctcatagac
     2101 aataaaggcc agctgattat ggtcgccgtt agtcaggtaa actatcttta tcctggcccc
     2161 ttttttcaaa gcctcctgga taaccccggc gcaggcaatg gcttcatcat ccggatgagg
     2221 ggcaaggata agtatccggt cgtctttaac aatcggctct aaggcggata tccccgaagc
     2281 gaaaaccttg gggcaaaaga acgctaaagc taaaaatatg agcggaaaga ttaattttgg
     2341 atattttcgc ttcattctaa aaactacatc gggtcaaggg gggcattccc gcgccggatc
     2401 tcaaagtgca ggtgcgggat gatactgcgg tgattggcgt ttccggtctt gcccacctcg
     2461 ccgattttat ccccctggcg gac
//
LOCUS       DATDUB010000194         7131 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1336656, whole genome shotgun sequence.
ACCESSION   DATDUB010000194 DATDUB010000000
VERSION     DATDUB010000194.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 7131)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7131)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7131
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1336656"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..705
                     /locus_tag="VJA84_03875"
     CDS             <1..705
                     /locus_tag="VJA84_03875"
                     /inference="COORDINATES: protein motif:HMM:NF020048.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UvrB/UvrC motif-containing protein"
                     /protein_id="HLD41298.1"
                     /translation="EEYVKIIKRISLILEGKGLELIKGLTAQMRERAKERRFEEAGQL
                     RDKIIALSAFKPSGDSFQSALNELQEALRLPCLPQRIEAFDVSNISGRQATASMVSFY
                     NGLADKDNYRRFRIKTVSQSDDYKMMAEAVRRRYRRLKEEGRALPDLILVDGGRGQLS
                     AAKDELRALGLDIPIVSLAKREEEIYTLRAPRPIRLKNNSPALRLVQHIRDESHRFAL
                     KYHRLLRKKKFLSEKE"
     gene            692..1009
                     /locus_tag="VJA84_03880"
     CDS             692..1009
                     /locus_tag="VJA84_03880"
                     /EC_number="2.1.1.63"
                     /inference="COORDINATES: protein motif:HMM:TIGR00589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003908 -
                     methylated-DNA-[protein]-cysteine S-methyltransferase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MGMT family protein"
                     /protein_id="HLD41299.1"
                     /translation="MKKNKLTGFTPFQLRVWEAALKIPFGQTRSYAWVAGQIGSPRAA
                     RAVGSALKKNPYPLIIPCHRVVKSGGDIGEYARGRKAKGQLLELEGRLKNMFCLKGDI
                     GIE"
     gene            1125..2195
                     /locus_tag="VJA84_03885"
     CDS             1125..2195
                     /locus_tag="VJA84_03885"
                     /inference="COORDINATES: protein motif:HMM:TIGR01420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043107 - type IV pilus-dependent motility
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilT/PilU family type 4a pilus ATPase"
                     /protein_id="HLD41300.1"
                     /translation="MKIKDCLKMMSQKDASDLFYRAGGPVRMRIDGRVTPVSDGELSV
                     EDVIQAVEEITTEKQRQLFKDHLDIDFGMFLDDIRQRFRVSIFSQRNTPSIVVRQIAQ
                     SVKSFEELGLPKDVLEKLCRETRGLVLLTGSTGSGKSTTIASAIEYINLNMKKHILTI
                     EEPIEYTFSDKISIVNQRELGPDVYSYATALKAFALQSPDVIYIGNIRDYETMATAMT
                     AAETGVMVLSTLHTINAPQSVERIINFFPPYQHEQVAIQLSTLLKGVISLRLVPFKDK
                     PGRAPAYESMVLTPTISRLIRERKVWEIPRYLQEGSIFGMQTFNQSLTKLVKENKISL
                     EDAMQFSDNKDELDLMIKGIKK"
     gene            2197..3295
                     /gene="prfB"
                     /locus_tag="VJA84_03890"
     CDS             join(2197..2256,2258..3295)
                     /gene="prfB"
                     /locus_tag="VJA84_03890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010881199.1"
                     /ribosomal_slippage
                     /note="programmed frameshift; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HLD41301.1"
                     /translation="MLEDIKVKLAGMDKRLNELRGIFDAPALEKSIEELNSRMSLPDF
                     WQDSSASSQVLSRIKACRSKLQPFKDIESQLKDFKELAEIIKETDSELISDLSRDIEP
                     LVREIDSLEFKLLLNGEFDPNSAILSLNAGAGGTESCDWGSMLLRMYCRFAESKGYKV
                     KTLDVLEGEEAGIKNVTLLIEGPYAYGYLKAESGVHRLVRISPFDSNKRRHTSFASVD
                     VIPQIEGEIDIKIEEKDIRIDVFRSSGPGGQSVNTTDSAVRITHMPTGIVAQCQNERS
                     QHQNKQNAFNILKARLYELERRKQEEKLQSQYAQKRKIEWGSQIRSYVMHPYSMVKDH
                     RTDYETGNVNAVMDGKLDEFIEAYLKMQKEK"
     gene            3437..6313
                     /gene="secA"
                     /locus_tag="VJA84_03895"
     CDS             3437..6313
                     /gene="secA"
                     /locus_tag="VJA84_03895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013907895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006605 - protein targeting [Evidence IEA];
                     GO_process: GO:0006886 - intracellular protein transport
                     [Evidence IEA];
                     GO_process: GO:0017038 - protein import [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HLD41302.1"
                     /translation="MLKFITRKIFGSQNEREVKRLLPLVEKINALEPDIQKLSDSQLR
                     AKTGEFRSKLAGKSQASQQDFMDLEIQIAEAGSKDEKDKLKLRLKLLRNSLFEDILPE
                     AFACVREAGKRAVNMRHFDVQLIGGVVLHEGKISEMATGEGKTLVATLPAYLNALLGK
                     GVHIVTVNDYLARRDREWMGPIYEFLGLSVGVIQHNMSPEERRMGYSCDITYGTNNEF
                     GFDYLRDNMVISKEDMVQQPFYYAIVDEVDSILVDEARTPLIISGPAEESTEKYYILN
                     KIVPKLKGRVILEKDEIDAKYKGIDLAKGYDYIIDEKAHTASLTDEGEAKACQLLNIE
                     NMHEIETMDYRHHLIQALRAHNLYQADVDYVIKEGQVIIVDEFTGRLMPGRRWSDGLH
                     QAVEAKEGLKIERENQTLATVTFQNYFRMYEKLSGMTGTALTEAAEFKEIYSLDVVSI
                     PTNRPLSRQNFPDRVYKSQKEKYNAVVEEIVECHNQGRPSLVGTVSIQKSEYISALLK
                     QKGVPHQVLNAKYHEMEASIVAQAGRYKGVTIATNMAGRGTDILLGGNADFIVKSILK
                     QKEILPHDDNYPAEYKNLLAKYKDEVEKEHNKVVDAGGLHVIGTERHEARRIDNQLRG
                     RSGRQGDPGASRFYVSLEDDLMRLFGSDKLIGIMSRLGLEEGQVIEHPWVSRSIEIAQ
                     KRVEQHNFEVRKQLLEYDNVMNKQREVIYHQRRQVLEGQDLKGLILDMSREIIEETAG
                     QHISPESPRQAWDVPAFQAWLRLAFSLELDENLFERDYQEIIEGIYQKINDSYSQKEQ
                     KMGPELIRHLERMVCLQIIDGKWKDHLYAMDSLREGIGLRAYGQRDPLVEYQREAYEM
                     FTQMINSIKAEIVDVIFKLQAERRPAQVKGIFESVKQELVHQEIGQFERQAQVSPDDG
                     SGRSLPREPETQPVNPHKYAGLSVGRNDPCPCGSGKKHKKCCGK"
     gene            6298..>7131
                     /locus_tag="VJA84_03900"
     CDS             6298..>7131
                     /locus_tag="VJA84_03900"
                     /inference="COORDINATES: protein motif:HMM:NF039484.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41303.1"
                     /translation="MLWEVSLFLSAISGILLALPFCRGRLWIFAWIGFVPLFLALRDK
                     SRLQSFLLSYLTGIVFWSITIYWLIHVTLLGQILLILYLSLYFGIFGLLVSKLLTIDY
                     RLLTLLFIPSLWVLLEYLRAHLLTGFGWALLGYSQYLNLPVIQIADIFGSYGVSFLVM
                     MVNMTVYRLGSARASLDYARGKPGRQGARKEIKYALVILMCVFIVLGYGYFKLYEPRI
                     TTHPAAGGAGDPRPTLGISLIQGNIPQELKWTPGAEGFILDRYLGLSQEAAKDRPDLI
                     IW"
BASE COUNT         1837 a         1677 c         1969 g         1648 t
ORIGIN      
        1 gaggaatatg tcaagataat taaacggatt tctttgattt tggagggaaa aggcctggaa
       61 ctgattaagg gcctaaccgc tcaaatgcgg gaaagggcca aagagcgcag gtttgaagaa
      121 gcggggcaat tgcgggacaa gattatcgcc ctaagcgcgt tcaagccttc aggcgacagt
      181 tttcaatccg ccctaaatga attgcaggag gccttaaggc tgccctgcct tccccagagg
      241 attgaggcct ttgatgtctc caatatttca ggcagacagg ccacggcttc aatggtatct
      301 ttttataatg ggctggcgga caaggacaat taccgccgct tccggatcaa gacggtcagc
      361 cagagcgatg attataagat gatggccgag gccgtgcgca ggcgttatcg caggctgaaa
      421 gaggaaggga gggccttacc ggatttaatc ttagttgacg gaggcagggg ccagctttcc
      481 gcggccaagg atgaattaag ggccttggga ttagatattc ccattgtaag cctggcaaaa
      541 agggaagagg aaatatatac ccttcgcgct cccaggccga taaggctgaa gaataattcc
      601 ccggccctgc gcctggttca acatatccgg gacgagtccc accgcttcgc cctgaagtat
      661 caccggctgc tacggaagaa aaaattctta agtgaaaaag aataaactga ctggttttac
      721 ccctttccag ctgcgggtct gggaggcggc gctgaagatt ccctttggcc agacgcgcag
      781 ttatgcctgg gtggccgggc aaatcggctc gcccagggcg gcgcgggcgg tgggcagtgc
      841 cttgaagaaa aatccctatc cgttgattat cccctgtcac cgggtggtta agtcaggcgg
      901 tgatatcggg gagtatgccc gtgggcgtaa ggccaaaggg caattgcttg agctggaggg
      961 gcggctaaaa aatatgtttt gccttaaagg ggatatcggt atagaataat attatattat
     1021 cgctgaacta tgcggaacgt cacgcggaac aacgcgcgac atctattgcg tggttctgcg
     1081 taaagttccg cgtgtttccg cggctaaacg gggagatttt ttagatgaag attaaagact
     1141 gcttgaagat gatgagccag aaggacgcct cggacctttt ttaccgcgcc ggaggccctg
     1201 tccggatgcg cattgacggc cgggtgaccc cggtatccga cggggagttg agcgtggagg
     1261 atgtcatcca ggcggtggag gagattacca ccgagaaaca gcggcaattg tttaaagacc
     1321 atctggatat tgacttcggg atgttcctgg atgatatccg ccagcgtttc agggtaagca
     1381 tcttttccca gcgcaatacc ccctctatcg tggtccgcca gattgcccag agcgttaagt
     1441 cctttgagga gctgggcctg cctaaggatg tcttggaaaa gctatgccgg gaaacccggg
     1501 gcctggtttt attgaccggc tcaaccggct ccggaaagtc caccaccatt gcctcggcta
     1561 ttgagtacat caacctgaat atgaaaaagc atatcctgac cattgaagag ccgatagaat
     1621 atacctttag cgataagatc tctattgtga atcaaagaga gttaggcccg gatgtctaca
     1681 gctatgccac ggctttaaag gcctttgccc tgcaaagccc ggatgtgata tatataggca
     1741 atatccggga ttacgagact atggccacgg caatgaccgc ggcggaaacc ggggtcatgg
     1801 tcttaagtac cctgcatact atcaatgccc cccagtctgt tgagcggata atcaatttct
     1861 tcccccccta tcagcacgag caggtggcta tacagctttc cacccttctt aaaggcgtta
     1921 tctctttgcg gctggttcct tttaaagata agcctggccg ggccccggcc tatgagtcta
     1981 tggtgctcac ccccacgatt tcccggctga tccgggaacg caaggtctgg gagatccccc
     2041 gctatctgca ggagggctca atcttcggga tgcagacctt taaccagtcg ctgaccaaat
     2101 tagtgaaaga aaacaagatc tccttagaag acgcgatgca gtttagcgac aataaggatg
     2161 agctggatct gatgattaaa gggattaaga aataatatgt tagaagacat taaagttaaa
     2221 ttggcgggga tggacaaaag gctcaacgag ctaagggggt atctttgacg ccccggcgct
     2281 ggaaaagagt attgaagaat taaacagccg gatgtccctg ccggatttct ggcaggacag
     2341 ctctgcctca agccaggtat taagccggat caaggcctgc aggtctaagc tccagccttt
     2401 taaggatatt gaatctcaac tcaaggattt taaagagctc gcggagataa tcaaggaaac
     2461 cgacagcgaa ctgatttcag atttaagccg ggatatagag ccgttagtta gagagattga
     2521 ttccctggaa tttaagctcc tcttaaacgg cgaatttgac cccaactccg ctatcctttc
     2581 cctgaatgcc ggcgccggcg gcacagaaag ctgtgactgg ggcagcatgc tacttcggat
     2641 gtattgccgc tttgccgaaa gcaagggcta caaggtaaag accctggatg tcctggaggg
     2701 cgaagaggcc gggatcaaga atgtgaccct gcttattgaa gggccttatg cctacggtta
     2761 tttaaaggcc gaaagcgggg tgcaccggct ggtgcgcatc tccccttttg attccaataa
     2821 acgccggcac acctcttttg cctcggtgga tgtcatcccc cagattgaag gcgagattga
     2881 catcaagatt gaggaaaaag acatccgcat tgatgtcttc cgttccagcg gcccgggcgg
     2941 gcaatcggta aataccacgg actcggcagt ccggatcacc catatgccta cgggaattgt
     3001 ggcccagtgc cagaatgaac gctcccagca tcagaacaag cagaacgcct ttaatatatt
     3061 gaaggccagg ctttacgagc tggaacggcg caagcaggaa gagaagctcc agtcccagta
     3121 tgcccagaag cgcaagattg aatggggcag tcagatccgc tcctatgtga tgcaccctta
     3181 cagcatggtc aaggaccacc gcactgatta tgaaaccggc aatgtcaacg cggtgatgga
     3241 tggaaaatta gatgagttta ttgaagcata tttaaagatg cagaaagaga aataaaatcc
     3301 taaatccaaa atactaaact ctaaataaat ccaaaacgcc aaacataaaa ttcaaaacag
     3361 agagctttaa attttgagtt tttgatttcg gatttgttta ggatttagag tttagtgttt
     3421 tgggtttaca aataagatgc ttaaatttat cacccgaaag atatttggtt cccagaatga
     3481 gcgggaggtt aagcggctcc tgccgctggt ggagaagata aacgctttag aaccggatat
     3541 ccagaaactc tccgacagtc agttgagggc caagacgggt gagttcagga gtaagctcgc
     3601 cgggaaatcc caggccagcc agcaggattt tatggatttg gaaatccaga ttgccgaggc
     3661 cggttctaaa gacgagaaag acaagctaaa gctaaggcta aagctgttaa ggaattcact
     3721 ttttgaggat atcctgcccg aggcctttgc ctgtgtgcgc gaggcaggca aaagggcggt
     3781 gaatatgcgc cattttgacg tccagctcat cggcggggtc gtcctgcatg aggggaagat
     3841 ttccgagatg gctaccggag aaggcaagac cctggtggct accctgccgg cgtatctcaa
     3901 cgccctctta ggcaaagggg tgcatatagt tacggttaac gattacctgg cccgccggga
     3961 ccgggaatgg atgggcccga tatatgaatt tttaggcctc tccgtggggg tcatccagca
     4021 taatatgagc ccggaagaaa ggcggatggg ctattcttgc gacatcacct acggcacgaa
     4081 taacgagttt ggttttgatt acctgcggga taatatggtg atttctaagg aggatatggt
     4141 ccagcagccg ttttattacg ccattgtgga tgaggtggat tccatcttgg ttgacgaggc
     4201 caggaccccc ctgattatct ccggcccggc ggaagagtcc acggaaaaat attatatcct
     4261 gaataagatt gtccctaaac taaagggcag ggttatctta gaaaaagatg agattgacgc
     4321 caaatacaaa ggtatagacc tggctaaggg ctatgattat atcattgacg aaaaggccca
     4381 taccgccagc cttaccgatg aaggcgaggc caaggcctgc cagctcttaa acattgagaa
     4441 tatgcacgag atagagacga tggattaccg ccatcatctg atccaggccc tgcgcgcgca
     4501 taacctgtat caggcggatg tggattatgt gattaaggaa ggccaggtaa ttattgtgga
     4561 tgagtttacc ggccggctta tgccggggag gcgctggtcc gacggcctgc accaggcggt
     4621 tgaggctaag gaaggcttaa agattgagcg ggaaaaccag accctggcca cagtcacctt
     4681 ccagaactac ttccggatgt atgagaagtt gtccgggatg accggcaccg ccttaaccga
     4741 ggccgcggaa tttaaagaga tctattcctt agatgtggtc tctatcccca ctaaccggcc
     4801 gctttcccgc cagaattttc cggaccgggt ctataagagc cagaaggaga aatataacgc
     4861 cgtggtggag gagattgtgg aatgtcataa tcagggccgg ccgagcctgg tagggaccgt
     4921 atccatccag aaatccgagt atatctcggc cctgcttaaa caaaagggcg tcccccacca
     4981 ggtgcttaat gccaaatacc acgagatgga ggccagtatt gtggcccagg ccggaagata
     5041 taagggcgta accattgcca ctaatatggc cggacgggga acggatatcc tgctgggagg
     5101 caatgccgat tttatcgtaa agagcatcct gaagcaaaaa gagatcctcc cccacgacga
     5161 taattatccg gcggaataca agaacctgct ggctaaatat aaggatgagg tggaaaagga
     5221 gcacaacaag gtggtggatg ccggaggatt gcatgtgatc ggcaccgagc gccacgaggc
     5281 ccggcggatt gataatcagc tgcgcggccg ctccggccgg cagggagacc ccggggccag
     5341 ccgtttctat gtctctctgg aagatgatct tatgcggctt ttcggctcgg ataagcttat
     5401 cgggattatg tcccgcctgg ggctggagga aggccaggtg attgagcatc cctgggtcag
     5461 ccgttccatt gagatcgccc agaaaagggt ggaacagcac aactttgagg tccgcaaaca
     5521 gctcctggaa tacgacaatg tgatgaataa acagcgggag gtgatttatc accagcgccg
     5581 tcaggtcctg gaaggccagg acttaaaagg actcatcctg gatatgtcca gggagatcat
     5641 agaagagact gccggtcagc atatctcccc ggaaagccca aggcaggcct gggatgtccc
     5701 ggctttccag gcatggttaa ggctggcttt ttccttggaa ctggatgaga atttatttga
     5761 gcgggattac caggagataa tagaagggat ctatcaaaag ataaatgaca gttattccca
     5821 gaaagagcaa aaaatgggcc cggaacttat ccgtcactta gagaggatgg tctgtctgca
     5881 gatcattgac ggcaagtgga aggaccatct ctacgcgatg gattccctgc gcgagggcat
     5941 aggcctgcgg gcctacgggc agagggaccc cctggtggaa taccagcgcg aagcctacga
     6001 gatgtttacc cagatgatta actccatcaa ggcggaaata gtggatgtaa tctttaagct
     6061 ccaggccgag agacgcccgg cccaggtaaa agggattttt gagtctgtca aacaggaatt
     6121 ggttcatcag gagataggcc agtttgaaag gcaggcccaa gtatccccgg atgatgggtc
     6181 tggccgttcc ctgccgcgag agccggagac ccagccggtt aatccccata aatatgccgg
     6241 cctctccgta ggccgcaatg acccctgccc ctgcggaagc gggaagaaac ataagaagtg
     6301 ctgtgggaag tgagtctttt tcttagcgcc atatcaggga tattattagc tttaccattt
     6361 tgccggggga ggctttggat atttgcctgg attgggtttg ttcccttatt tcttgccctg
     6421 cgtgataaaa gccgcctcca atcctttctt ttgtcctatc ttacaggcat tgttttctgg
     6481 tcaatcacta tttattggtt gattcatgtt acgctccttg gccagattct gctcattctc
     6541 tatctttccc tttatttcgg catctttggg ttattagttt ctaaactatt gactatagac
     6601 tatcgactat tgacccttct gtttattcct tctctctggg ttttgctgga atacctgcgc
     6661 gcccacctct tgaccggatt cggctgggca ttgttggggt attcccaata tcttaacctg
     6721 ccggtaatcc agattgccga tatcttcggc tcatacggtg tgtcgtttct ggtgatgatg
     6781 gtgaatatga cggtgtatag attagggagc gccagggcat ccctcgacta cgctcggggc
     6841 aagccagggc gccagggcgc cagaaaggaa ataaaatacg ccctggttat attgatgtgt
     6901 gtttttattg tcttgggcta tggttacttt aaactctacg aaccacgaat cacgacccac
     6961 cccgcagctg gcggggcagg cgacccacga cccacgcttg gcatttccct gatccaagga
     7021 aacattcccc aggaactgaa atggaccccc ggcgcggagg ggtttatctt agacaggtat
     7081 ctgggcctaa gtcaggaggc agctaaggac aggccggacc tgataatctg g
//
LOCUS       DATDUB010000195         2141 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_324483, whole genome shotgun sequence.
ACCESSION   DATDUB010000195 DATDUB010000000
VERSION     DATDUB010000195.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2141)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2141)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2141
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_324483"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..578)
                     /locus_tag="VJA84_03905"
     CDS             complement(<1..578)
                     /locus_tag="VJA84_03905"
                     /inference="COORDINATES: protein motif:HMM:NF014619.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyphenol oxidase family protein"
                     /protein_id="HLD41304.1"
                     /translation="MLLGNYIFESFNAHNCLAAFSLGKLDLGFKDNPGLRQNRALFLG
                     QLGIAAESLVCLQQVHGNTVFQAQSKDAGRGAFEYETAVAGCDGLISAQGGLPLAVFS
                     ADCLSVFMLDTANRIAAILHAGWKGTRDRIALSALDIFKNRFNSRAKDIICGFGPCIR
                     NCCYEVSEVFQDYFPDCVEQRREKFFLDLIKI"
     gene            complement(569..1612)
                     /gene="pyk"
                     /locus_tag="VJA84_03910"
     CDS             complement(569..1612)
                     /gene="pyk"
                     /locus_tag="VJA84_03910"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: protein motif:HMM:TIGR01064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004743 - pyruvate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HLD41305.1"
                     /translation="MPKIPITKIIATLGPASSSETVIRKMILSGLDVCRLNFSHGDHS
                     AHQRRLDIVRTVNQKYRRKIKILQDLEGNRIRVGRLKDGQPLELKKGAKLWLVKKEVV
                     GNLKEVQIDYDGSFLDIHSGAFVFIDDGNIRLKIKQSFKDKVLAEVVIPGALKEHKGV
                     NIPHSRLKFPRVTEKDKQDIQFGINNGVEYIAQSFVQDKYDCRALKKLFRDKLPGCKL
                     VAKIECRPAVRNIDEIIAESDVIMVARGDMGVCLPIWEVPLIQKMIIRKCNQKRKPVI
                     TATQMLESMTESFQPTRAEVADVANAVLDGTDFVMLSAETAAGAYPIESVRMMNQIIK
                     HIESAAIFRRKCC"
     gene            complement(1743..>2141)
                     /locus_tag="VJA84_03915"
     CDS             complement(1743..>2141)
                     /locus_tag="VJA84_03915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HLD41306.1"
                     /translation="INFRENWRGYLWEGRFKSYPLSESHLYAAIRYIERNPVRAKIIK
                     NAWDYPWSSARAHVFKEKNILLDKNFLTSDIPDWKAFLSEEDKPDNVNLLKLHAATGR
                     PLGDDKFIKAIEDETGRELKKRKPGPKNNN"
BASE COUNT          543 a          549 c          449 g          600 t
ORIGIN      
        1 tttatcttga tcaagtcaag aaagaacttt tcccgccttt gctctacgca atcaggaaaa
       61 taatcctgaa aaacctcact cacctcataa caacagtttc ggatgcatgg gccaaaaccg
      121 cagataatgt ctttcgcgcg gctattaaac ctgtttttaa agatatccag cgcgcttaag
      181 gcaatcctat ccctggtgcc tttccatccg gcatgcagta tggcggctat ccggtttgcg
      241 gtatccagca taaagaccga aaggcagtcg gcgctgaata ccgccaaagg caatcctccc
      301 tgagcgctta tcaggccgtc acacccggcc acggcagttt cgtattcaaa ggccccccgt
      361 ccggcgtctt tactttgggc ctggaaaacc gtattcccat ggacctgttg taaacaaacc
      421 aggctctctg cagctatgcc caactgccct aaaaaaagag cgcggttttg tctcaaaccc
      481 ggattatcct taaaacccaa atccagcttg cccagactga aggcggcaag gcagttatgg
      541 gcattaaaac tctcaaaaat ataattacct aacagcattt acggcggaat atggcagcgc
      601 tctcaatatg cttgataatc tggttcatca tccgcacgct ctctatggga taagctccgg
      661 cagcggtctc ggcggagagc atcacaaagt ccgtcccgtc caagaccgcg ttagccacat
      721 cagccacctc ggcgcgggta ggttgaaaag actcggtcat gctctccaac atctgggtgg
      781 cggtaatcac cggctttctt ttctgattgc atttacggat aatcatcttc tgaatcagcg
      841 gcacctccca tataggaaga cagaccccca tatctccccg ggcaaccata atcacatcgc
      901 tttcagcgat tatctcatct atgttccgga ccgcggggcg gcattctatc ttggcgacta
      961 acttacatcc gggcagttta tcccggaata acttcttaag cgcccggcag tcgtatttat
     1021 cctggacaaa agactgggca atatattcca cgccgttatt aataccaaac tggatgtcct
     1081 gcttatcttt ttcggtgacc ctgggaaatt tcaaacggga atgggggata ttcactcctt
     1141 tatgttcctt aagcgcacct gggatgacta cttctgccag gactttatcc ttaaatgact
     1201 gctttatttt cagccggata ttgccgtcat caataaaaac gaacgcgccg gaatggatat
     1261 ccaggaaaga gccgtcataa tctatctgga cctcctttag attgccgaca acctcttttt
     1321 ttaccagcca cagctttgcc ccttttttaa gctcaagcgg ctggccgtct ttgagcctgc
     1381 ctacgcggat acggttaccc tctaagtcct ggagtatttt tatcttgcgt ctgtattttt
     1441 gattgacagt gcggacaatg tctaatcgcc gctggtgagc gctatggtcg ccgtgagaaa
     1501 aattcaaccg gcagacatcc agaccggaga gaatcatctt gcgaataacc gtctcggaag
     1561 aactcgccgg ccctaaagta gcaattatct tggttatcgg tatcttaggc atctaaacac
     1621 ttactaggaa gttccggggg aaggagtcaa tgcaaatttt agttgagaat ggcaaagttc
     1681 tccgtaactg tttcatctag gcaagttccg caagttccgg gcaagttccg gggacacatc
     1741 acttaattat tgtttttcgg ccctggtttt cgtttcttta gttcccttcc ggtttcatcc
     1801 tcaatagcct ttataaactt atcatctcct agcggcctgc ctgtagccgc atgtaattta
     1861 agaagattaa cattgtcagg cttgtcctct tcggatagaa aagctttcca atctgggata
     1921 tctgaagtga gaaaattctt atctagcagt atattttttt ctttaaatac atgagctcta
     1981 gcgcttgacc aaggataatc ccaggcattt ttaattattt ttgctcttac aggatttctt
     2041 tctatgtaac ggattgcggc atataaatga gattcgctca aaggataaga cttaaatctt
     2101 ccttcccaga gatagccacg ccaattttct ctgaagttta t
//
LOCUS       DATDUB010000196         2262 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_141188, whole genome shotgun sequence.
ACCESSION   DATDUB010000196 DATDUB010000000
VERSION     DATDUB010000196.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2262)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2262)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2262
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_141188"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..347
                     /locus_tag="VJA84_03920"
     CDS             <1..347
                     /locus_tag="VJA84_03920"
                     /inference="COORDINATES: protein motif:HMM:NF020135.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ketopantoate reductase C-terminal
                     domain-containing protein"
                     /protein_id="HLD41307.1"
                     /translation="ITGLNNGRLIEFEASRKILEAAVTEAVKVAKKKRIKLIYDDPLS
                     KVEAVCEATSGNVSSMLQDVLKGRRTEIDFINGVIVRQAQGLGIAAPVNAALTGLVKT
                     IEASYSLRVAKV"
     gene            479..874
                     /locus_tag="VJA84_03925"
     CDS             479..874
                     /locus_tag="VJA84_03925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41308.1"
                     /translation="MSGIIYLASDSLSCFWISFASGFLIDLDHVLDYYLQEGVNFDVK
                     RFFRICLECRLKHLSVILHSWELLALLWFWIIWSKSGIFWVSFAIGASQHMFFDLVFN
                     SRRVKTHYFYFLSMRLVKGFRFGEFLHKR"
     gene            871..>2262
                     /locus_tag="VJA84_03930"
     CDS             871..>2262
                     /locus_tag="VJA84_03930"
                     /inference="COORDINATES: protein motif:HMM:NF014826.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-hairpin-helix domain-containing protein"
                     /protein_id="HLD41309.1"
                     /translation="MITKTIAGIFRDIAKILEIKGENVFRIRAYERAARNVESLSEDI
                     QDLINDDRLRSIPGVGEDLEGKIKEIVKTGRLEFLEDLKKSLPEGLLELLDVPSVGPK
                     TAKLFYEKLNIRSIAQLEKAAKEGKLLELEGIKEKSVENILKGIALLKQGKERMDLAS
                     AISASGELIKGLKGGAPISEIMACGSLRRRKETVRDIDILAVSDSPDKVVLAFVSLPQ
                     VKDINAKGETKSSIVTREGAQVDLRVVEKRSYGAALVYFTGSKAFNIKLRQMAIKKGL
                     KVNEYGVFKVKSDKETYLCGQSEEEVFKALDLPYIEPELREDTGEVEAALKNKLPEFL
                     SLQDIKGDFHCHSRYSDGNNSILEMAGAAKALGYQYINISDHSQSLKVAGGLSLEDLK
                     KKKAEIEKLNAQLKGFRILFGTEVDIDSRGRLDYPDSILAEFDVVVAAIHTGFKQSKK
                     QITKRLVRACKNKN"
BASE COUNT          616 a          442 c          636 g          568 t
ORIGIN      
        1 ccattaccgg cctgaataat ggcaggctga ttgaatttga ggctagccgc aagatcctgg
       61 aagcggcggt gaccgaagcg gtaaaagtgg ccaagaaaaa aaggatcaag ctgatttacg
      121 acgacccttt atccaaggtg gaggcggtct gcgaggccac ctccggcaat gtctccagta
      181 tgctccagga tgtcctgaaa ggcaggcgca cggagataga ttttattaac ggggtgattg
      241 tccgccaggc ccaaggctta ggcatagccg cgccggtaaa cgcggccttg accggattgg
      301 tcaagaccat agaggccagc tacagcctgc gggtcgctaa agtttagaga agaaaataat
      361 aaagggtcga tagtcaatag aaaaaataat gaccatagac tatcgaccct tagttactaa
      421 cctttattta taggagttta agattaaagc cgaacatcac ttcattgcca cttccgcggt
      481 gagtggcatt atttatttgg cctcggattc cttgagctgt ttctggattt cctttgccag
      541 cgggtttctg atagacttag accatgtcct ggattattac ctccaggaag gggtgaattt
      601 tgatgttaaa cgttttttta ggatttgctt ggaatgccgc ctgaaacatt taagcgttat
      661 cctgcattcc tgggagctgt tggccttgtt gtggttttgg attatctggt ccaaatcggg
      721 gatattctgg gtctctttcg ccatcggggc cagccagcat atgttttttg acctggtttt
      781 taacagcagg cgggtgaaga cgcattattt ttattttttg agtatgcgat tagtgaaggg
      841 gttcaggttt ggcgaatttt tgcataaaag atgatcacca aaaccatagc cgggatattt
      901 cgggatatcg ctaagatttt agagattaaa ggcgagaatg tctttcgcat ccgggcctat
      961 gagcgggcgg ccaggaatgt tgagtcttta agcgaggata tccaggactt gatcaatgat
     1021 gaccggttga gaagtatccc gggggttggg gaggacctgg agggaaagat caaggagata
     1081 gtcaaaaccg gcaggcttga attcctggag gacttgaaaa agagccttcc tgaagggttg
     1141 cttgaacttt tggatgtccc ttcagtcggg ccaaagaccg ccaagctctt ttatgagaag
     1201 ttgaatataa gaagtattgc ccagttggaa aaggcggcta aagaaggaaa gctcttagag
     1261 ttggaaggga taaaggaaaa gagcgtagag aatattttaa aagggatagc cttgctcaag
     1321 cagggcaagg agcggatgga tttggcctcc gctatctcgg cctccgggga attgataaag
     1381 ggattaaagg gaggcgcgcc catatcggag attatggctt gcggctcttt acgcagacgc
     1441 aaggaaacgg tccgggatat tgatatcctg gcggtctcgg attcaccgga taaggtggtc
     1501 ttggcctttg tcagtctgcc ccaggtcaag gacataaacg ccaaaggaga gactaaatct
     1561 tccatcgtca cccgggaggg cgcccaggtg gatttacggg tggtggagaa aagaagttat
     1621 ggcgcggcct tagtttattt taccggttca aaggccttta atatcaagct ccgtcagatg
     1681 gcgataaaga aaggtttaaa ggtcaacgaa tacggggtct ttaaggtcaa aagtgataaa
     1741 gagacctatc tctgcggaca aagcgaggaa gaggtattta aggccctgga cctgccttac
     1801 attgagccgg aactgcgcga agacacagga gaagtagagg ccgcccttaa aaataaactg
     1861 cctgaatttt tgtctttaca ggacattaaa ggggattttc actgccactc ccgatattcc
     1921 gacggtaata acagtatctt agagatggcc ggggcggcca aggccttagg ctatcagtat
     1981 attaacatca gcgaccattc ccagagccta aaggttgccg ggggattatc gcttgaagat
     2041 ttaaagaaga aaaaggcgga gatagagaaa ttaaacgctc aacttaaagg tttccggatt
     2101 ctctttggga cggaggtgga tattgattcg cggggaaggc tggattatcc ggattctatt
     2161 ctggcggaat ttgatgtggt ggtggcggca atacataccg ggtttaagca gtccaagaag
     2221 cagataacca agcgcttggt ccgcgcctgt aaaaataaga at
//
LOCUS       DATDUB010000197         4003 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1669938, whole genome shotgun sequence.
ACCESSION   DATDUB010000197 DATDUB010000000
VERSION     DATDUB010000197.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 4003)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4003)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4003
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1669938"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(75..425)
                     /locus_tag="VJA84_03935"
     CDS             complement(75..425)
                     /locus_tag="VJA84_03935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41310.1"
                     /translation="MFKGRVNIMFLSQKRGQSTLEYALLIAAVVSGLLVMQMYVKRGM
                     AGRVKSASDELGEQYDPTAFTASYTSISHSKRSETSKAGETRSELTDQEYTRRSGAET
                     VSAWTANEGIYDDL"
     gene            complement(427..789)
                     /locus_tag="VJA84_03940"
     CDS             complement(427..789)
                     /locus_tag="VJA84_03940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41311.1"
                     /translation="MRRDKKGQSTVEYAIVVGVVVAALVAMQTYVKRGLQARYHDGIQ
                     FLAAETNIAASDGTVSLGGTTQYEPYYLASSYTTGSDKSENDSSSARGQITRTLDSDT
                     RTREIGGSETNANTDIAD"
     gene            complement(834..1001)
                     /locus_tag="VJA84_03945"
     CDS             complement(834..1001)
                     /locus_tag="VJA84_03945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41312.1"
                     /translation="MRNIKGQSTLEYIIILSAIVLALMAGRGMIKTAVNQSLNDTAAS
                     MTAATKKLPGI"
     gene            complement(1014..1187)
                     /locus_tag="VJA84_03950"
     CDS             complement(1014..1187)
                     /locus_tag="VJA84_03950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41313.1"
                     /translation="MLKRGQSVIEYSVLVGVIAAAFIAMSQYVNRAIGARLKQVQEEI
                     YVSPEPGVSIPKK"
     gene            complement(1191..1448)
                     /locus_tag="VJA84_03955"
     CDS             complement(1191..1448)
                     /locus_tag="VJA84_03955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41314.1"
                     /translation="MKEKKKYLIEQAGQNFFVTMLITTFKKNLIIRILREGNGQAVIE
                     YIIIFIAITLVVAGFISKAHNTDRDGIMDNHFQDMVKQTLG"
     gene            complement(1549..2427)
                     /locus_tag="VJA84_03960"
     CDS             complement(1549..2427)
                     /locus_tag="VJA84_03960"
                     /inference="COORDINATES: protein motif:HMM:NF012694.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HLD41315.1"
                     /translation="MLLLITIFIFLSAYTTAYHYYLYRQMHVSLVLSKDAIPPKAKAQ
                     FIENALHKLMKPFGFLANLKFSRSFASRSIPAKLIMAGSPVSILEFVLFKILSMAMFP
                     ILSYIVFQSKEVLYIVFPVLVGFIVPDMWLGAKIKRRQREIRRDLPAAIDLLKLCVEA
                     GLDFMLAVHKVAQEFKKCPLTDELLEVWRETRMGASRRDALQHLSRRVNIPELSSFVR
                     TLLQADKMGSPMGEALKIQSEEILQRRFFQGEEAALKAPIKLLLPLFLFILPAVLIIV
                     AGPILLQFMRGGMLKF"
     gene            complement(2448..3296)
                     /locus_tag="VJA84_03965"
     CDS             complement(2448..3296)
                     /locus_tag="VJA84_03965"
                     /inference="COORDINATES: protein motif:HMM:NF012694.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HLD41316.1"
                     /translation="MIIFLIVLFASLSFLIIVNMFYPQIERIHNNWQRGRIEKITPRL
                     DSMFIDVPYRKLLIIDILIPLVIGVLVFITTRIFSAALAAAFVGIILSSIIVKRMEIA
                     RRMKFTGQLIDGLMLLSGSLKAGLSLLQSFEALVEEMPAPISQEFSLVLKENRMGVTL
                     EECLVKLKRRMQCDELDMLVTAVLVARETGGDLTTIFTNMVKTIRERNRLLSRVKALC
                     SQGKLQGRIMMLLPIVFGYGVYKFDPTFFNALMNDPQGRMMLGYAVVSEILGMFFIIR
                     LSKVEV"
     gene            complement(3428..>4003)
                     /locus_tag="VJA84_03970"
     CDS             complement(3428..>4003)
                     /locus_tag="VJA84_03970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41317.1"
                     /translation="QEVFLNKVLGIKFILADKSFFFMDASFNTVWPDIRIPLDFATAL
                     IRLKSRLNDCLFLENSPLVLQVVSGYGEPLGAFWDFVAAFGAEDTDKALSRIELYGEN
                     HGLLGIIEQVPARKVNFIIGLWPWQYKDKVIFGALRFIEYAPQGVLRFCLLTNFKEEG
                     WNEQRVVTAYLEHWPFPEKSYQRLLEKIIRL"
BASE COUNT         1112 a         1068 c          774 g         1049 t
ORIGIN      
        1 gccgccaaaa acgcgtattc caacatcgcc tggccgccgg attttatctt cattttatca
       61 gattaacccg cagattacaa gtcgtcgtat atgccctcgt tcgcggtcca ggccgatacc
      121 gtttccgcgc cgcttcgccg ggtatattcc tgatcagtca attcggacct ggtttccccg
      181 gcctttgagg tttcactgcg cttagaatga ctgatagagg tatagctggc agtaaaagca
      241 gtagggtcat actgctcgcc cagctcatcg ctggcgctct tcacccttcc ggccattccc
      301 cgttttacat acatctgcat cactaacaac ccgctaacca ctgccgcgat caataaagca
      361 tattctaatg tgctctgtcc tcttttttgg cttaagaaca taatgtttac cctcccttta
      421 aacattttaa tcggctatat cggtattcgc gttagtctcg gagcctccga tctcgcgggt
      481 tctcgtgtcg ctatcaagcg ttctggtgat ttggcccctg gccgagctgc tatcgttttc
      541 gcttttatct gaaccggtag tataactgga ggcaagataa tagggctcat actgggtagt
      601 cccgcctaag gagacggtcc cgtcgctggc ggcaatattg gtttccgcag ccagaaactg
      661 gatcccgtca tgatatctcg cctggagccc cctcttgaca taggtctgca tagctaccag
      721 cgccgccacc actaccccca ccacaatagc atattctacg gtagattgac cttttttatc
      781 tctgcgcata ttaattcccc ccctttaatt tagcctatta ttgatttgct attttatatc
      841 ccgggcagct tcttagtggc cgcggtcata gacgcggctg tatcattcag gctctgattt
      901 accgccgttt taatcatgcc cctgccggcc atcagggcca agacgattgc cgagagaatt
      961 attatatact ctaacgtgct ttgtcctttt atgttacgca tcaaacgcct ccattacttt
     1021 ttcgggatac ttacccccgg ctccggagag acataaattt cctcctggac ctgtttaagc
     1081 ctggccccta ttgcccggtt aacatattga ctcatagcaa taaaagccgc ggcaatcacc
     1141 cccaccaaca cactgtattc tattaccgac tggcctcttt ttagcatttt tcatcccaag
     1201 gtctgcttga ccatatcttg aaaatgattg tccattatcc catccctatc cgtattatgc
     1261 gcttttgaga tgaatcctgc cactacaagg gtaatggcaa taaagatgat tatatactca
     1321 attactgcct ggccgttacc ctctctcaaa atgcggataa ttaaattctt tttaaaagta
     1381 gtaattaaca ttgtaacaaa aaaattttgt ccggcctgtt ctattaaata ttttttcttt
     1441 tctttcatgt ctgacaaaca aaatataaca tatatttccc cttttgtcaa tacgatatca
     1501 gcatttttga gaaaacgctt tctttaagaa gttgcagccg caagatagtt aaaacttaag
     1561 catcccaccc cgcataaact gcaacaagat tggcccagcc actataatca agaccgcggg
     1621 caggataaat aagaaaaggg gtaataatag cttaatcggg gcctttaaag ccgcttcttc
     1681 accctgaaag aagcggcgct gaaggatttc ctccgattga atcttcaggg cctcccccat
     1741 aggcgaaccc atcttgtcag cctgaagcag ggtgcgcaca aaactggaaa gttccgggat
     1801 gttcacccgg cgcgataaat gctgcagggc atctctgcgg gaggccccca tcctggtctc
     1861 tctccagacc tctaataatt catcggtcaa aggacatttc ttgaattcct gggccacttt
     1921 atgcactgcc agcataaagt ccagccccgc ctccacgcaa agctttaaga gatcaatcgc
     1981 tgccggaagg tcgcgccgga tctcgcgctg acggcgctta attttcgcgc ccagccacat
     2041 atccggcacg ataaaaccga ccaataccgg aaagactata tacaaaacct ccttactctg
     2101 aaaaacaata taggatagga tcggaaacat agccatgctc aagatcttaa aaaggacaaa
     2161 ctccaaaata cttaccggag aaccggccat tatcagcttg gccgggatgg aacgactggc
     2221 aaaagaacgg ctgaatttga gattggccag gaaaccaaac ggcttcataa gcttatgcaa
     2281 ggcgttctca atgaattgcg cctttgcctt aggcggaatg gcatctttag acaacaccaa
     2341 agaaacatgc atctgccggt aaagataata gtggtaggcc gtggtatacg cgcttaagaa
     2401 aataaatatt gttattaata atagcatatc tttagggtag aaaacgctta aacctcaacc
     2461 ttgcttaaac ggatgataaa aaacatcccc aggatttccg aaacaaccgc ataccccagc
     2521 atcattcttc cctggggatc gttcattaag gcgttaaaga aagtgggatc aaatttataa
     2581 accccatatc caaaaacaat aggcaaaagc atcataatcc ggccctgaag ctttccttga
     2641 ctgcataatg cctttacccg gcttaaaagg cggttccgtt cccgtattgt ctttaccata
     2701 ttagtgaata tggtcgtcag gtctcctccg gtttcccggg ccaccagcac cgcggtaacc
     2761 agcatatcca gctcgtcgca ctgcatcctg cgctttaatt tgaccaaaca ttcctccagg
     2821 gtaacgccca tccggttttc cttcaaaacc aggctgaatt cctgcgatat cggggccggc
     2881 atctcctcca ccagggcctc aaaagattgc aaaagggaaa gcccggcctt aagcgagccg
     2941 gataaaagca ttaacccgtc aatcaactgt ccggtaaatt tcatcctgcg ggcgatttcc
     3001 attctcttga caataatgct tgagagaatt attccgacaa atgccgcggc caaggccgct
     3061 gaaaatattc tggtagttat aaataccagc acccctataa ccaaaggaat cagtatatct
     3121 ataattagaa gtttacggta ggggacatct ataaacatac tatccagccg gggggttatc
     3181 ttttcaatgc gccctctttg ccaattattg tgtatacgct cgatctgggg ataaaacata
     3241 ttgacaatta tcagaaaaga taaagaagca aataaaacta taaggaatat aatcataatc
     3301 cggattttcc cttaataatc cctgtctcgc gtagaaattc tactctcata ataaaacata
     3361 tcacatactc cggcctgcgt caaggccaaa accgcatttt taggaaaacg cttcctttta
     3421 aaccctgcta taaacggata atcttttcta acagcctctg ataacttttt tccggaaatg
     3481 gccaatgctc cagataggcc gtaacaaccc tctgctcatt ccaaccctct tccttaaaat
     3541 tggtcagcaa acagaagcgc aagactccct ggggggcgta ttctataaac cgcaaggccc
     3601 cgaatatgac cttatcttta tactgccagg gccacaggcc aataataaaa ttgaccttcc
     3661 tggccgggac ctgctcaata atccccagca agccatgatt ctcaccatat aactctatgc
     3721 ggctcaaagc cttatccgta tcttcggccc cgaaagcggc cacaaaatcc caaaatgccc
     3781 ccaacggctc cccataaccg gaaaccactt gcaagactaa cgggctattt tctaaaaaaa
     3841 gacagtcatt aagccggctc ttcagcctaa tcagagccgt ggcaaaatct aaaggtatcc
     3901 gaatatccgg ccagaccgta ttaaaagagg catccataaa gaaaaagctt ttatccgcca
     3961 ggataaactt tatccccagg accttgttca gaaagacttc ctg
//
LOCUS       DATDUB010000198         5165 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_2480656, whole genome shotgun sequence.
ACCESSION   DATDUB010000198 DATDUB010000000
VERSION     DATDUB010000198.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 5165)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5165)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5165
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2480656"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1097)
                     /gene="purF"
                     /locus_tag="VJA84_03975"
     CDS             complement(<1..1097)
                     /gene="purF"
                     /locus_tag="VJA84_03975"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: protein motif:HMM:TIGR01134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004044 - amidophosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HLD41318.1"
                     /translation="MPRSSYNYEPRSTNHAPREYCGLFGISGHKQASWLTYLGLFAQQ
                     HHGQEACGIAVNNKGVLSVHKDMGLVNEVFNEKILSVLKGDMALGHVRYSTTGSSVLK
                     NSQPLLIDYAKGSICVAHNGNLVNSLEARQGLERSGSIFQTTTDSEIIIHLMAKSRSR
                     DLKESLLYALKRIRGAYSLLMMDNSCLVGIRDPWGFRPLCLGKLGDAWCLASETCAFD
                     LVGARFIRDIDPGEIVFINKEGLKSLRPKELQSKRYAHCTFEHVYFARPDSLVFGETV
                     HLVRQKLGERLAKEHPVKADFVVPVPDSGFSAAMGYSKASGIPLEMGIIRNHYVGRTF
                     IQPAQDSRELGIKVKFNLLKDVLRGKRIIIV"
     gene            complement(1078..1857)
                     /gene="purQ"
                     /locus_tag="VJA84_03980"
     CDS             complement(1078..1857)
                     /gene="purQ"
                     /locus_tag="VJA84_03980"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020257895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004642 -
                     phosphoribosylformylglycinamidine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase I"
                     /protein_id="HLD41319.1"
                     /translation="MVRPKVLVLRAAGTNCDKETAFAFSEAGSRIELAHINQLKAKEK
                     RLSDYHILALAGGFSYGDDIAAGKILANELKYALVSEFKAFINQGKLIIGICNGFQVL
                     VKAGLLPGNDNLEQEVTLTINDSAKFEDRWVYLERTENRGQRTEGKTGCVWTKGLPEE
                     IYLPVAHGEGKFMAKDKTVLERLEKNGQVVLRYRDNPNGSENDIAAICDQTGRIFGLM
                     PHPERHSFGWQNPRWTREGLKKEGDGLQIFRNGVEYAKKFL"
     gene            complement(1844..2512)
                     /locus_tag="VJA84_03985"
     CDS             complement(1844..2512)
                     /locus_tag="VJA84_03985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004570150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00730 family Rossman fold protein"
                     /protein_id="HLD41320.1"
                     /translation="MLKHRISNDDFTHEDPWRIFRIMSEFVEGFEVLSKVGDAVSIFG
                     SSRTHPKDKYYGKYYKLTEDIAYHLAKAGFAIITGSGPGMMEAANKGARRAKGRSVGL
                     NIEIPLEQKSNPYVDILVDFHYFFIRKVMFVKYAKAFVITPGGFGTLDELFEAINLIQ
                     TERIGKFPVVLAGGEYWQGMLDWIKKTVLKRGNVSHCDMEIFRVIDSPKEIVSYINSF
                     YGKT"
     gene            complement(2522..>5165)
                     /gene="purL"
                     /locus_tag="VJA84_03990"
     CDS             complement(2522..>5165)
                     /gene="purL"
                     /locus_tag="VJA84_03990"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007223221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004642 -
                     phosphoribosylformylglycinamidine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurL"
                     /protein_id="HLD41321.1"
                     /translation="TAKEYLLKGDVSDGAVKTISEKLLYNKVIQHIIRAPERQSARAP
                     AELNYSFKLITVDLLKASDKKLKEMSRQGQLFLNLTEMRQIKDYFKKLGRNPTDCELE
                     TIAQTWSEHCRHKTFRGKIEYTEVVRRPLVPPAAGSSLPCRQAGVVRRTKKINNLLKS
                     TIMMVTKELDKPWCVSVFKDNAGIIKFDDEYNICFKVETHNHPSALEPFGGANTGIGG
                     VIRDPLGTGLGARPFLNTDIFCFGAPDYPQDRLPKGVLHPKRIAKGVVAGVKDYGNKM
                     GIPTVNGAVLFDQGYLANPLVYCGTAGIMPKDKSFKKVSPGDLIVVAGGRTGRDGIHG
                     ATFSSGELTQESELVSGGAVQIGNPITEKKMMDALLAARDRNLYSALTDCGAGGLSSA
                     VGEMAEELGARVDLEKAPLKYQGLSYAEIWISEAQERMVLAVPKENKDKLLKLFAGEN
                     AEAVVIGEFSDTKRLELFYEGNKVSDLEMGFLHNGLPQITKKAVWTQPKHKEPAFACP
                     KDLSGPLKKILSHYNVCSKEWIIRQYDHEVQGGAVLKPLTGIANDGPSDAAIVKPRLD
                     SPKGVIVSCGINFKFGMIDPYWMAASCIDEALRQIIAVGGSLRRAALLDNFCWGNPDK
                     PDRLGGLVRSALGCYRIAKDFGAPFISGKDSLYNEYSLNGRAKAIPGTLLISAIAVME
                     DTSKTVSMDVKKRGDLMYIIGDTYPELGGSHYFDTLGFLGNSVPKVNPGKAKALMERI
                     SGAVNKGLIRSAHDCSEGGLGVALAEMCFAGGLGMEVFLKEVPYKVKNQKSKIKNTSK
                     NSKVNEARNDFILFSESNSRFVVEIEKDKQKDFEKAMKGVSFGLIGCVSDDEDFKVYG
                     LDGKPCVSADINDLKEAWQRPLRW"
BASE COUNT         1258 a         1499 c         1086 g         1322 t
ORIGIN      
        1 tccacgatga tgatcctttt gcctcttaag acatccttga gcagattgaa tttgaccttt
       61 atccccaatt cccgggagtc ctgggccggc tgaataaatg tccggccgac atagtggttg
      121 cggattatcc ccatttccag ggggatccct gaagctttgg aatagcccat agccgcggaa
      181 aatcccgaat ccggcaccgg caccacaaaa tccgccttta ccggatgctc cttggccagg
      241 cgctctccta acttctgccg caccagatgc accgtctccc cgaagaccag cgaatccggc
      301 cgggcgaaat agacgtgctc aaaggtgcag tgggcgtatc ttttggactg gagctcttta
      361 ggccttaggg atttcaggcc ttccttattt atgaagacaa tttctccggg gtcaatatcc
      421 cggataaatc tcgccccgac caggtcaaag gcgcaggtct ccgaagccag gcaccaggca
      481 tcccctaatt tccccaggca taaaggacga aaaccccaag ggtcacggat cccgaccagg
      541 caggaattat ccatcatcag taaggaatat gccccccgaa tcctttttaa ggcatataaa
      601 aggctttcct ttaagtccct ggacctggac ttagccatca gatggatgat aatttcagaa
      661 tcagtggtag tctggaaaat ggagccgctt ctttccaggc cctggcgggc ctccagggaa
      721 ttaaccagat taccgttatg ggccacgcag attgagcctt tagcgtaatc tatcaagaga
      781 ggctgggaat ttttcaggac gctggagccg gtagtggaat aacgcacatg gccgagcgcc
      841 atatcgcctt taagaacaga caatattttc tcgttaaaaa cctcattaac cagccccata
      901 tccttatgca ctgacaaaac gcctttatta ttcaccgcga tgccgcaggc ctcctgtccg
      961 tggtgctgct gggcgaataa tcccaaataa gtaagccagc tggcctgctt gtggccgctg
     1021 ataccaaaca aaccgcagta ttctcgcgga gcgtggttcg tggatcgtgg ttcgtaatta
     1081 taagaacttc ttggcatatt ccactccatt acggaagatt tgcaggccat cgccttcttt
     1141 ttttaaacct tctcgcgtcc agcggggatt ctgccagcca aagctgtgcc tttcaggatg
     1201 gggcataagc ccgaaaatcc ttcccgtctg atcgcagata gcggcgatat cattctccga
     1261 gccgttgggg ttatcgcgat agcgcaagac cacctggcca tttttctcta atctttccaa
     1321 caccgtctta tccttagcca taaacttccc ctccccatgg gcaacgggga gataaatctc
     1381 ctccggcaac cccttcgtcc agacacatcc tgttttgccc tctgttctct gtcctctgtt
     1441 ctctgttctc tctaaataca cccagcgatc ctcaaacttc gcggagtcat tgatagtcag
     1501 ggtaacctct tgctctaaat tatcattacc cggcaataac ccggccttaa ccagaacctg
     1561 gaaaccgtta cagataccga taatcagttt tccttgattg ataaaagcct tgaactcgct
     1621 aacaagagcg tatttcagct cattggccag gatctttccc gcggcaatat catcgccgta
     1681 gctgaaacct ccggccaggg ccaggatatg atagtctgaa agcctctttt ccttggcctt
     1741 aagctgattg atgtgcgcca gctcaatccg cgatccggcc tcggaaaagg caaaggccgt
     1801 ctctttatcg caattggtcc cggcagcgcg caggaccagg accttaggtc ttaccataaa
     1861 aactatttat ataacttact atttctttcg gactatcaat aaccctaaag atctccatgt
     1921 cgcaatgaga gacattccct ctttttaaca cggtcttttt aatccagtcc agcatcccct
     1981 gccagtattc cccgccggcc aggaccaccg ggaatttgcc gatcctctcg gtctggatta
     2041 agttaatggc ctcaaaaagc tcatccaggg tgccgaatcc tccgggagta atcacaaagg
     2101 ccttggcgta tttgacaaac ataaccttac ggataaaaaa ataatgaaaa tctaccagga
     2161 tgtccacata ggggttagac ttctgctcca gagggatctc aatattcagg cctacggaac
     2221 gccccttggc ccggcgcgcg cctttattgg ccgcctccat catcccgggg ccgcttccgg
     2281 taataatggc aaacccggcc ttggccagat gataggcgat atcctcggtg agtttataat
     2341 acttgccgta atacttatcc ttggggtgcg tccgggagga gccgaatatg gagaccgcgt
     2401 cacccacctt agacaaaacc tcaaacccct ccacaaactc cgacattatc cggaatatcc
     2461 gccaggggtc ctcatgggta aaatcgtcat tgcttattct atgttttagc atctttttct
     2521 cctaccatct tagcggcctc tgccaggcct cttttaagtc attgatatcc gcgctcacac
     2581 aaggctttcc gtctaagccg taaaccttaa aatcctcatc atccgacacg cagccaatca
     2641 ggccaaacga cacccctttc atcgccttct caaaatcttt ctgcttatcc ttttctattt
     2701 ctacgacaaa acgcgaattt gactccgaaa ataagataaa atcgtttctt gcttcattta
     2761 cttttgaatt tttacttgta tttttgattt ttgatttttg atttttgact ttatacggca
     2821 cttccttcaa aaacacctcc atccccaggc ctccggcaaa acacatctcc gccaaagcca
     2881 cccccagccc gccttcagaa caatcatggg cagagcggat taggccttta ttaacggccc
     2941 ctgaaatcct ctccatcaag gcctttgcct tcccgggatt aaccttcggc acgctattcc
     3001 ccaggaaacc caaggtgtca aaatagtgcg agccgcctaa ttccggatag gtatccccga
     3061 taatatacat caaatccccg cgtttcttga catccataga aactgtcttg gaagtatcct
     3121 ccatcaccgc gattgccgag attaaaagcg tccccggtat ggccttagcc ctgccgttaa
     3181 gggaatattc attataaagg ctgtccttgc cggagataaa aggcgccccg aaatctttgg
     3241 caatcctata acagcctaag gccgaacgca ctaaaccccc caatctgtcc ggtttatccg
     3301 gattgcccca gcaaaaatta tcaagaagcg ctgcccgcct caatgaaccg cctaccgcga
     3361 ttatctggcg cagggcctca tcaatacacg atgccgccat ccaataagga tcaatcattc
     3421 caaatttaaa atttatcccg caggagacaa tcaccccttt cggggagtct aaacgcggct
     3481 tgacaattgc cgcgtccgaa ggcccgtcat tggctatgcc ggtaagcggt tttaagaccg
     3541 cgcctccctg cacctcgtgg tcatactggc ggatgatcca ttccttggag cagacattat
     3601 aatggcttaa gattttcttc aaaggcccgc ttaaatcttt cgggcaggca aaggccggct
     3661 ctttatgctt gggctgggtc cacaccgcct tcttggttat ttgaggcagg ccgttatgca
     3721 agaaccccat ttctaaatcc gagaccttgt tcccctcata aaaaagctct aatcttttag
     3781 tatcgctgaa ttccccgatt accaccgcct cggcattttc cccggcaaac agttttaaaa
     3841 gcttatcctt attttcctta ggcactgcca ggaccatccg ctcctgggcc tcggatatcc
     3901 agatctcggc gtaagaaagc ccctggtatt ttaaaggcgc cttttccagg tccacccgcg
     3961 cccctaattc ttcagccatc tcacccaccg cgctggagag ccctccggcc ccgcagtcag
     4021 taagcgcgga atataaattc ctgtcccgtg ccgctaaaag cgcgtccatc attttcttct
     4081 cggtaatggg gttgccgatc tgcactgccc cgcctgaaac cagctcggat tcctgggtaa
     4141 gctctcctga agaaaaggtg gccccatgga taccatctct tccggtcctg ccgccggcaa
     4201 ccacaatcaa atctccgggg ctgaccttct taaaggattt atccttaggc ataatcccgg
     4261 cagtcccgca atagaccaaa ggattggcta aataaccttg atcaaacaat accgcgccgt
     4321 taaccgtagg tatgcccatt ttgttgccat aatctttcac tcccgccacc acccctttgg
     4381 caatgcgttt aggatgcagt actccttttg gaagccggtc ttgcggataa tccggagctc
     4441 cgaaacaaaa gatatcggta ttcaaaaacg gcctggcccc caagccggtg cccaatggat
     4501 cgcggataac cccgccaatc ccggtattgg ccccgccaaa aggctccagg gccgagggat
     4561 gattatgggt ctccacctta aaacagatat tatattcatc gtcaaacttg ataatcccgg
     4621 cattatcctt aaacaccgac acgcaccagg gcttatccaa ctccttagtc accatcatta
     4681 tggttgactt cagcagatta tttattttct tagtccgacg gacgacgcct gcctgccggc
     4741 aaggcaggga cgaccccgcc gccggcggga caagcggacg acggacgact tcagtatact
     4801 ctatcttccc gcgaaatgtc ttatgccggc agtgctcgct ccaggtctgg gcaatggttt
     4861 ccagttcaca atcggtagga ttacgcccta actttttaaa ataatcctta atctggcgca
     4921 tctcggtcaa attcaggaac aactgtcctt gcctgctcat ctccttaagt ttcttatccg
     4981 aggccttaag caagtctacg gtgataagct taaaactata atttaattcg gctggcgctc
     5041 tggcgctctg gcgctctggc gctctgataa tatgctgtat caccttatta taaagcaatt
     5101 tctcggatat cgtcttaacc gctccatctg aaacatcacc tttaaggaga tattctttgg
     5161 cagtc
//
LOCUS       DATDUB010000199         2708 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_326515, whole genome shotgun sequence.
ACCESSION   DATDUB010000199 DATDUB010000000
VERSION     DATDUB010000199.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2708)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2708)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2708
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_326515"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            89..394
                     /locus_tag="VJA84_03995"
     CDS             89..394
                     /locus_tag="VJA84_03995"
                     /inference="COORDINATES: protein motif:HMM:NF024139.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HLD41322.1"
                     /translation="MSEKLLTIREVASILGLNEKEVVELAEQGKIPAYKVGGIYLRFQ
                     REQIEQYKDKAKPANYKPVIKNGYTPSERIRDFFYFYDFYLISGILLMILLAIIAKG"
     gene            395..1063
                     /gene="larB"
                     /locus_tag="VJA84_04000"
     CDS             395..1063
                     /gene="larB"
                     /locus_tag="VJA84_04000"
                     /inference="COORDINATES: protein motif:HMM:NF033503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nickel pincer cofactor biosynthesis protein
                     LarB"
                     /protein_id="HLD41323.1"
                     /translation="MGSKGYCSLGFANLDTDRNKRRGFPEVIYAPGKSDRQLQILAKN
                     IILSRQTLLITRLKEESFVFLKESFPELRYNPQARIAYLRLKNPHPPKGLAVVVSAGT
                     SDIPVAEEASCVLEIMGNKVKRLYDLGVAGVHRLMDKRHILRRAKVIVVAAGMEGALP
                     SVVSGLVSVPVIAVPTSVGYGANLKGLSALLTMLNSCSPGVAVVNIDNGFGAGYLAGM
                     INRV"
     gene            1097..1513
                     /locus_tag="VJA84_04005"
     CDS             1097..1513
                     /locus_tag="VJA84_04005"
                     /inference="COORDINATES: protein motif:HMM:NF014693.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formylmethanofuran dehydrogenase subunit E
                     family protein"
                     /protein_id="HLD41324.1"
                     /translation="MGKTVSLKQAVDFHGHLGPYLVLGLLMGDYALKKIKANPHFGLE
                     VKVWGAKDKPKSCLIDGLQLSTGCTYGKGNIAQYDGKVIKVSFLNRDSRERLDLLLQD
                     RIIARLESAVDHKSCEKLAGEFYKTKPEYLFKSNEV"
     gene            1516..>2708
                     /gene="acsC"
                     /locus_tag="VJA84_04010"
     CDS             1516..>2708
                     /gene="acsC"
                     /locus_tag="VJA84_04010"
                     /inference="COORDINATES: protein motif:HMM:NF003195.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA decarbonylase/synthase complex
                     subunit gamma"
                     /protein_id="HLD41325.1"
                     /translation="MALSGLDIYKLLPKTNCRQCGFPTCLAFALALAKKATSLEKCPT
                     VSSEAKQALEAQSQPPIRLIRVGDEKNKVEIGNETVMFRHEEKFHHPAAIGFIIEDSL
                     SNDQIKQRLDKIGKLRFERVGQLIKTDLVAVRQTKDAARFNEALKLVSASNNYGLVLI
                     SEDPAALKEALKASSGKNPLIYAASDKNLAELSAMSKEFGSSLAVKAESLDKLAELTK
                     KAVDAGAVDLVLDVDVNRQPSKVIAELTQLRRQALKKSNRALGYPLITVMDRLSSYEE
                     VIKAGDYIAKYAGIILLNGFEEWQALSLLTLRQNIYTDPQKPLQIEPKLYAIGNTSET
                     SPVLVTTNFSLTYYTVLGEVEASKVPSNILSVDTEGMSVLTAWAAEKFTPDKISDSLK
                     KSGLE"
BASE COUNT          699 a          598 c          751 g          660 t
ORIGIN      
        1 cctcggcgtt cttctcaata actacattat ggaatgacgc ctgcggaact gcgcgcgaaa
       61 tacctgccgc aggtcgtcta aagatttaat gagcgaaaaa ttattaacca tacgggaagt
      121 agcctctatc ttgggcctta atgagaaaga ggtggttgag ctggctgaac aagggaagat
      181 ccctgcctac aaggtcgggg ggatttactt aaggtttcag cgggagcaga tagagcaata
      241 taaggataaa gccaaacccg cgaattacaa gccggtaatt aagaacggct atacccccag
      301 cgaacggatc cgggatttct tttattttta tgacttctat ctgatttccg ggatcctgct
      361 tatgatcctg cttgccataa tcgctaaagg atagatgggt tcaaaagggt actgcagttt
      421 gggctttgcc aatttagata cggatagaaa caaaagaagg ggtttcccgg aagtaatcta
      481 tgccccggga aagagcgaca gacaacttca gatcctcgct aaaaatataa tcctctcccg
      541 gcagacactg ctgattaccc ggttaaaaga agagtcgttt gtttttttga aagagtcatt
      601 ccctgaatta agatataatc cccaagccag gattgcctat ctaagactta aaaatcccca
      661 tccgccaaaa ggtttggctg tggtagtcag cgccgggacc tcggatatac cggttgccga
      721 ggaggcctct tgcgtcctgg agataatggg caataaggta aaaaggcttt atgatctggg
      781 ggtggccggg gtgcaccggc ttatggataa gaggcacatc ctgcgccggg caaaggtgat
      841 cgtggtggcc gcgggcatgg agggggccct gcccagcgta gtcagcggct tggtttcggt
      901 tccggtgatt gccgtgccta ccagcgtggg atacggggca aatttaaaag gcctctccgc
      961 cctgctgact atgctgaata gctgttcacc gggagtggcg gtggttaata ttgataatgg
     1021 ctttggcgcc gggtatctgg cggggatgat taatagagtt taggagtttg gggagttttg
     1081 gagtttagga gttttagtgg gaaaaacagt ttctttaaaa caggcggtgg attttcacgg
     1141 gcacctgggg ccgtatctgg tcttgggcct gcttatgggc gattatgccc ttaagaaaat
     1201 taaggccaat ccgcatttcg gattagaggt gaaggtctgg ggggcaaagg ataaacccaa
     1261 atcctgcctg attgacggtc tccagctttc tacgggatgc acttatggca aggggaatat
     1321 cgctcaatac gatggcaaag ttatcaaggt gagttttttg aatcgcgaca gccgggaaag
     1381 gctggatttg cttttgcaag acaggataat agcaaggctt gaatctgccg tggaccataa
     1441 atcctgcgaa aagctggccg gggaatttta taagactaaa ccagagtatc tttttaaatc
     1501 aaacgaggta taaatatggc attatcagga ttagatatct ataagcttct tcccaaaact
     1561 aattgccggc agtgcggttt tcccacttgc ctggcctttg ccctggccct ggctaagaaa
     1621 gcgacatctt tggagaaatg ccctacggtc agctccgagg ccaagcaggc cctggaggcc
     1681 cagtcccagc cgccgatacg gctgattcgc gtcggagacg agaagaataa ggtggaaata
     1741 ggcaatgaga ccgtgatgtt ccgccatgag gaaaagtttc accatcccgc ggctataggt
     1801 tttattattg aagacagcct ttctaacgac cagataaaac agcgcttaga taaaatcggg
     1861 aaactgcgtt ttgagcgggt gggccagctg atcaaaaccg acctggttgc cgtccgacag
     1921 accaaggacg cggcgagatt taatgaggcg cttaagctgg tttcggcttc taataattac
     1981 ggactggtcc tgatcagcga ggatcccgcg gccttaaaag aggccttaaa ggcatcctcc
     2041 gggaagaacc ctcttatata cgctgccagc gataagaatt tagccgaatt gtcagcgatg
     2101 tctaaagaat tcggctcatc cttggcggta aaggccgagt cgctggataa gttagccgag
     2161 ctgactaaaa aggcggtaga tgccggggca gtggatttgg tcctggatgt tgatgtgaat
     2221 cgccagcctt ctaaagtcat tgccgagctt acccaactgc gcagacaggc cttaaagaag
     2281 tctaaccggg ccctgggtta tcccttgatt acggtaatgg ataggctgtc ctcttatgaa
     2341 gaggtgatca aggccgggga ttatatcgcc aagtatgccg ggattattct tttaaacggt
     2401 tttgaggaat ggcaggcctt gtccctgctt accttgcgcc agaatattta taccgatcct
     2461 caaaagcctt tgcagattga accgaagctg tatgctatcg gcaacacctc ggagacatcg
     2521 ccggttctgg tgactacgaa tttctcgctt acttattata ccgtgctggg ggaggtggag
     2581 gccagcaagg tccccagcaa tatccttagc gtggataccg aggggatgtc ggtcctgact
     2641 gcctgggccg cggaaaaatt caccccggac aagatctcgg acagcctgaa gaagtcaggg
     2701 ctggaaga
//
LOCUS       DATDUB010000200         3149 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_495343, whole genome shotgun sequence.
ACCESSION   DATDUB010000200 DATDUB010000000
VERSION     DATDUB010000200.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3149)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3149)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3149
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_495343"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1429
                     /locus_tag="VJA84_04015"
     CDS             <1..1429
                     /locus_tag="VJA84_04015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012033378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="1,4-alpha-glucan branching protein
                     domain-containing protein"
                     /protein_id="HLD41326.1"
                     /translation="DRVDFRLTMSLTPSLIAMLGDALLQERYVRHIDKLIELSQKEIE
                     RTRFEPVLNNLARMYFNQFTDCRRVFESYERNLTLAFKKFQDLGRLEIVTCGATHGYF
                     PLMDATKSSIRAQLRIAVSQYEKVFKRPPRGIWLPECGYNPGDDQFLKEAGLKFFFTD
                     AHGLLHGSPRPKYGVFAPVYCKGSQVACFARDIESSKQVWSSIEGYPGDYNYREFYRD
                     IGFDLDYDYIKPYISSDGVRINTGIKYYRITGGTNDKKPYVPEWARQKAAEHAANFVF
                     NRQKQAEYLYDLLQKKPVIVSPYDTELLGHWWFEGPMWLDFVIRGIYFDQDTIKMITP
                     MEYLQENPRNQVITPSMSSWGYKGYSEVWLQGTNDWIYRHLHEASWRMNELVKLFPDS
                     NGRLRRALNQALRELLLAQSSDWAFIMATGTHTSYAAKRTKEHILQFLKLYDDIKADS
                     IDEAWLTGIESQDNIFPEIDYRVHQ"
     gene            1482..2237
                     /locus_tag="VJA84_04020"
     CDS             1482..2237
                     /locus_tag="VJA84_04020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003385855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenyl transferase"
                     /protein_id="HLD41327.1"
                     /translation="MVARSVQRKFRDKMIDKDNLPKHVAIIMDGNGRWASQRNLPRIE
                     GHREGIKRAEEIIEAADEIGIKFITFFAFSSENWKRPRLEVETLMHLLDLFLKNNLKR
                     LMENNVRLKAIGRKDPIPDYLWRNLCRVQETTGNNTGLTVILAFNYGSRQEITDAARK
                     IAGEILEKRLSLEDLDEKAIEGFLYTAGIPDPDILIRTSSELRISNFLLWQISYAELY
                     FPKVLWPDFKRPYLEEAISEYQNRARRFGAINA"
     gene            2230..3021
                     /locus_tag="VJA84_04025"
     CDS             2230..3021
                     /locus_tag="VJA84_04025"
                     /EC_number="2.7.7.41"
                     /inference="COORDINATES: protein motif:HMM:NF013327.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HLD41328.1"
                     /translation="MLKHRILSTIIWAGVIYLAIRYKIAFVFAVIFLIAAGLYEFFSL
                     IEKKGIHIYKYFGMAMGIIIPLSIIFKFELTKSWELFFIVAALLCIFVLQLKRKDNSQ
                     AVVSISTTLFGILYVSWLFSFLIKLRQISPWYLFAIIFITKSSDIGAYLIGSRFGRRH
                     LLPRISPKKTVEGSVGGLLFSILTAMACKPIFGLSFPHLALIGAGVGILAELGDLSES
                     LIKRDCQVKDSGNLFPGLGGVLDIIDSLLFTAPAFYFYMSNVLVK"
BASE COUNT          799 a          693 c          808 g          849 t
ORIGIN      
        1 ggaccgggtg gatttcaggc tgactatgtc tcttaccccc agccttatcg ctatgctggg
       61 ggacgcgttg ctccaggagc gttatgtccg gcacattgat aagttgattg aattatccca
      121 gaaagagatt gagcgcaccc gttttgagcc ggtgcttaat aatttggcca ggatgtattt
      181 taaccaattc accgactgcc gccgggtctt tgaaagttat gagcgcaatc tgactttggc
      241 ctttaagaaa ttccaggatc tgggcaggct ggagattgta acctgcgggg ccactcacgg
      301 gtattttccg ctgatggatg caaccaagtc ttctatccgg gcccagttaa ggatcgcggt
      361 gagccaatat gagaaggtct ttaaacgacc tccccggggc atctggcttc cggagtgcgg
      421 atataatccc ggagatgacc agtttttgaa agaggcgggg ttaaaatttt tctttaccga
      481 tgcccacggc ctgcttcacg gatctccccg gcctaaatac ggggtctttg ccccggttta
      541 ctgcaagggg agccaggtgg cctgttttgc ccgggatatt gaatcttcca agcaggtctg
      601 gtcctcaata gagggatatc cgggagatta taattaccgg gagttttacc gggatatcgg
      661 gtttgacctg gattacgatt atatcaagcc ttatatttca tctgacgggg tccggataaa
      721 taccgggata aaatattacc gtataaccgg cggcactaat gacaaaaaac cttatgtccc
      781 ggaatgggcc aggcagaagg ccgcggagca tgcggctaat tttgtcttta accgtcagaa
      841 gcaggcggag tatctctatg acctgctgca gaagaaaccg gttatagtat ctccttacga
      901 taccgagctc ctgggccact ggtggtttga ggggccgatg tggctggatt ttgttatccg
      961 cggcatctat tttgaccagg acacaattaa aatgataacc cctatggagt atctgcagga
     1021 aaacccccgc aaccaggtga tcaccccttc tatgtccagc tgggggtata agggctattc
     1081 ggaggtctgg ctgcaaggga ccaacgattg gatataccgc cacctgcatg aggccagctg
     1141 gaggatgaat gaattggtca agctgtttcc cgattctaac ggcagattaa ggcgggccct
     1201 taatcaggcc ttgagggagc ttctcttggc gcagtcttct gactgggcct ttattatggc
     1261 taccggcacc cacaccagct atgccgccaa gcgcaccaag gagcatatcc tgcagtttct
     1321 taaattatac gacgacatta aggctgattc aatagatgag gcctggctca ccggcataga
     1381 atcccaggac aatatctttc cggaaataga ttacagggtg caccaataaa tcgctgaaca
     1441 acgcggaact ttacgctgaa caatgcgtaa gacgatattg cgtggttgcg cgtagtgttc
     1501 agcgtaagtt tcgcgataaa atgattgata aagataatct ccctaagcat gtagccataa
     1561 ttatggacgg caacggccgc tgggcaagcc aaaggaatct ccctcgtatt gaaggccatc
     1621 gcgaagggat aaagcgggcc gaagagatca ttgaggccgc ggatgagatc gggataaagt
     1681 ttatcacctt ttttgccttt tcttctgaaa actggaaacg ccccaggtta gaagtggaaa
     1741 cgctgatgca tctattggac ctgttcctta agaataactt aaaaaggctg atggagaata
     1801 atgtccggct taaggcgata ggcaggaaag accctattcc ggattatctc tggaggaatt
     1861 tatgccgggt gcaggagacg accggcaata acactggcct gactgtcatt ttggccttta
     1921 attacggctc caggcaggag atcactgatg ccgccagaaa gattgccggg gagatcctgg
     1981 aaaagaggct tagcttagag gatttggatg aaaaggcgat agagggattt ctgtataccg
     2041 ccggtatccc cgacccggac attttaatcc gcaccagcag cgaactgcgg ataagcaatt
     2101 tcctgctttg gcagatttct tacgcggagc tgtatttccc aaaggtcctt tggccggact
     2161 ttaagaggcc ttatttggag gaagctatca gcgaatatca aaaccgcgct cggcgattcg
     2221 gggcgataaa tgcttaaaca ccggattttg agcaccataa tctgggcagg ggtgatttat
     2281 cttgccataa gatacaagat tgcctttgtc tttgccgtta tattcctgat tgccgccggt
     2341 ttgtacgagt tcttcagcct gattgagaaa aagggcatac atatttataa gtacttcggc
     2401 atggctatgg ggattattat ccccttatcc ataattttta agtttgagct gaccaaaagc
     2461 tgggagcttt tctttatagt ggcggccttg ttgtgcatat tcgtcctgca gttaaagagg
     2521 aaggacaatt cccaggcggt agtcagcatc tctactaccc tctttggaat actttatgtg
     2581 tcctggttat tcagtttcct gatcaaactg cgccagatat caccgtggta tttgttcgcg
     2641 attatattta ttaccaaatc ctcggatatc ggggcctatt taatcggaag caggtttggc
     2701 cggcggcatc ttttgcccag gataagccct aaaaagacgg ttgagggctc tgtcggaggg
     2761 ctgttattca gtatccttac ggcaatggcc tgcaagccga tatttggttt gagtttcccg
     2821 catttggccc ttataggcgc gggcgtcggg atactcgcgg aattggggga tttatccgag
     2881 tctctaatca agcgcgactg ccaggttaag gattccggga atctcttccc cggcttaggc
     2941 ggggtattgg atattattga cagccttttg tttaccgccc cggcgtttta tttttatatg
     3001 agtaatgtat tggtaaaata agaatgttaa atcctaaaaa ctaaactcta aattctaaac
     3061 aaatccaaaa cccaaaagct aaaattaaaa gcaaaaattt tggattttag atttggaatt
     3121 ttaaatttgt ttagagttta gtatttagg
//
LOCUS       DATDUB010000201         2452 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_987144, whole genome shotgun sequence.
ACCESSION   DATDUB010000201 DATDUB010000000
VERSION     DATDUB010000201.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2452)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2452)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2452
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_987144"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1613
                     /locus_tag="VJA84_04030"
     CDS             <1..1613
                     /locus_tag="VJA84_04030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013907135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="peptide-binding protein"
                     /protein_id="HLD41329.1"
                     /translation="EIMNQSQGEGNWFWRFMKKSICPPILLAAFLFCKSLLAQDSGDA
                     LVSGSIADARILVPILASDSASAEVCGMIFNGLVKYDKDINLVGDLAENWEIQDEGLT
                     IIFHLRENVFWQDGQPFTAADVEWTYKKLIDPAVPTPYSGDFLKVKSLEIVDPYTVKV
                     SYGEPFAPGLASWGMPIMPKHIPFFSERPIGTGPYKFKSWKSQEKIELAANANYFEHA
                     PYISRWIYRVIPDEAALFLELQAKGIDLSGLTPLQYKRQTDSAFFKENYRKFRMQSFG
                     YTYLGYNLNNPLFQDLRVRQALNYAVDKEEIIKGVLLGLGRVCAGPFVPESWAYNQDV
                     KPADFSPRKAKGLLREAGWTDSDKDGWLDREGTRFEFTILTNQGNLERQRAAEIIQAR
                     LKDVGIKVKIRVVEWSVFLTEFINKRHFEAVLLGWALGREPDCYDIWHSSKTKEGEFN
                     FAGYSNPEVDRLLEEGRRTFDQNKRKEAYHQIQRILYEEQPYMFLYIPDALPIISSRF
                     EGIIPAPIGLSYNLIDWWTPKAKQRYKQ"
     gene            1702..1950
                     /locus_tag="VJA84_04035"
     CDS             1702..1950
                     /locus_tag="VJA84_04035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018410761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AbrB/MazE/SpoVT family DNA-binding
                     domain-containing protein"
                     /protein_id="HLD41330.1"
                     /translation="MVTTITVRGQTSVPSLIRRKYNLRPHTKIEWLETPRGITVIPVP
                     EDVLKTFRGMFKGSGITRELLKERAKERERERRRDKRH"
     gene            1922..2359
                     /locus_tag="VJA84_04040"
     CDS             1922..2359
                     /locus_tag="VJA84_04040"
                     /inference="COORDINATES: protein motif:HMM:NF013970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PIN domain-containing protein"
                     /protein_id="HLD41331.1"
                     /translation="MSEGGTKDINKKYLLDTSAIMTLSEDEAGSEVVYDILNKAKSSG
                     YEVYISFISVMEACYKVQQHYRNEQSAYRMFNDLRHLPLIRVDINDNLILTSASIKAI
                     YSVSLADAWILATAKSLNATLVHKDPEFEPLKDLIHQIILPYK"
BASE COUNT          647 a          515 c          651 g          639 t
ORIGIN      
        1 aagagattat gaaccagtct caaggggagg ggaattggtt ttggaggttt atgaaaaaga
       61 gtatatgccc gccaattttg ttggcggctt ttttgttttg taaaagtctc ctggcccagg
      121 attccggcga tgccttagtc agcggctcta ttgctgatgc ccggatactg gtgccgatac
      181 tggcctcgga ttcggcttcc gccgaggtct gtgggatgat ctttaacggc ctggtaaaat
      241 acgataagga tattaacctg gtcggcgacc tggccgagaa ctgggagata caggatgagg
      301 gcttaaccat aatctttcat ctgcgcgaaa atgtcttttg gcaggatggc cagcccttta
      361 ccgccgcgga tgtagagtgg acatataaga agttgattga cccggctgtg cctactcctt
      421 atagcggaga ttttttaaag gtaaagagct tagagattgt tgatccgtat acagtcaagg
      481 ttagttatgg ggagccgttt gccccgggcc tggccagctg gggtatgccc ataatgccca
      541 agcatatccc ttttttctct gaaaggccaa taggcaccgg cccttataaa ttcaagtcct
      601 ggaaaagcca ggaaaagata gagctggccg ctaacgcgaa ttattttgag catgccccgt
      661 atatcagccg ctggatttac cgggtcatcc ccgatgaggc cgccttgttc ctggaactgc
      721 aggccaaggg catagatcta agcggcctga cccctctgca atataagcgc cagacggatt
      781 ccgcgttttt taaagagaac taccggaaat tccgtatgca gtcttttggc tatacctatt
      841 taggatataa tctgaataac cctttgtttc aggatctccg ggtgcgccag gccttgaatt
      901 acgcggtgga caaagaggag ataattaaag gggtgttatt aggtttaggc cgggtgtgcg
      961 ccgggccatt tgtcccggag tcctgggctt ataatcagga tgtgaagccc gctgattttt
     1021 ccccgcgaaa ggccaagggc ttactgcggg aagccggttg gactgatagc gataaggacg
     1081 gctggctgga tagggaggga acgaggtttg agtttaccat tttgaccaat cagggcaatt
     1141 tggaaagaca gcgcgccgcc gagataatcc aggccaggct taaggatgtg ggaataaagg
     1201 taaagatcag ggtagtggag tggtcggtgt ttctgaccga gtttatcaat aagcggcatt
     1261 ttgaggcggt gcttctgggc tgggcattgg gaagggagcc ggactgttat gacatctggc
     1321 attcatccaa gaccaaggaa ggggagttta atttcgccgg ctattccaat ccggaggttg
     1381 accgtctcct ggaagaaggc cgccggacct ttgaccagaa taagcgcaaa gaggcttatc
     1441 atcaaattca gcggatactt tatgaggaac agccgtatat gttcctatat atcccggatg
     1501 ccctgcccat aatctccagc cgttttgagg gcataatccc cgcgccaatc ggattaagtt
     1561 ataatttgat tgactggtgg accccaaaag ccaagcagag atataagcaa taggggggct
     1621 ttatttgtac aagtcaaaag catatttcag cttgacaaat cgttatttag cttgtatgct
     1681 ttaatttagg gggtgataaa tatggttact acaattacag taagggggca gacctctgtc
     1741 ccttcgctta tccgcagaaa gtataaccta aggccgcaca ccaagataga atggctggag
     1801 acgcccagag ggatcacggt tattcctgtc cccgaagatg tacttaaaac attcagggga
     1861 atgtttaagg gttccgggat taccagggaa ctgctgaagg aaagggcaaa ggagcgcgag
     1921 cgtgagcgaa ggcgggacaa aagacattaa taagaaatat ttgttggaca cctctgcgat
     1981 aatgacatta tccgaagacg aggctggttc cgaggttgtc tatgatattt taaataaggc
     2041 caaatcctcc ggctatgagg tgtacatttc ttttatcagc gttatggagg cttgttataa
     2101 ggtccagcag cattacagga atgaacaatc ggcatatcgg atgtttaacg atcttcgaca
     2161 tctgccgctt atacgcgtag atattaatga taatttgatc ttaacttcag cttcaataaa
     2221 agcgatttac tcggtttctc tggctgatgc ctggatcctg gctacggcca agtctttaaa
     2281 cgctactctt gtgcataaag accccgagtt tgaaccttta aaagatttaa tccatcagat
     2341 aatcctccca tacaaataga cggggttttg aatgttgaaa ctaaaataat tcttgactcc
     2401 agccggcgta tttgctataa aatcatttag ccacggaacg cacagagagg tg
//
LOCUS       DATDUB010000202         3765 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_497515, whole genome shotgun sequence.
ACCESSION   DATDUB010000202 DATDUB010000000
VERSION     DATDUB010000202.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3765)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3765)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3765
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_497515"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(99..188)
                     /locus_tag="VJA84_04045"
     tRNA            complement(99..188)
                     /locus_tag="VJA84_04045"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(152..154),aa:Ser,seq:tga)
     gene            complement(195..863)
                     /locus_tag="VJA84_04050"
     CDS             complement(195..863)
                     /locus_tag="VJA84_04050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41332.1"
                     /translation="MFNPKKAPPEKVFSDLKPPSKNQINEFFLISLKLAIGICLLPAL
                     YAATLCFSGELAKLEGAAVRPFVWGIIGFLVMYLFVWEPVIIFKKGQRVLEVIFRFFA
                     PLVKVASFVLPIYTILISAGYFIGLQFFGMKEFIPLFIFGIGFSLALHLVFCAKTLRA
                     KSGDKLKSNYIFGFGCIYILDALLLSLFFNLAFEHFSFLNFFNGSYQLSKGIYLAVFR
                     QLFL"
     gene            complement(873..2138)
                     /gene="serS"
                     /locus_tag="VJA84_04055"
     CDS             complement(873..2138)
                     /gene="serS"
                     /locus_tag="VJA84_04055"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013118939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004828 - serine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006434 - seryl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HLD41333.1"
                     /translation="MLDLKFIRENSDIVRLALKNRRSGLELDGLIELDDKRKKVLFEL
                     EGLRAEKNKANDEISKILKEKKDPKERIASMKDIAAKIDLLEAELREIEPRISRILLT
                     VPNIPHSSIPVGDASVNKVVRTWGEPRKIANPRSHIELAEHLDIIDFNRAAKLTGSNF
                     ILYKGEGARLERALYNFMLDLHTSQHGYKEIFPPFLVNRASMTGTGQLPKLEDDMYRL
                     KDDDLFLIPTAEVPLTNIFRDEILNEEDLPIYYTAYTACFRREAGSYGKDTRGLMRVH
                     QFDKVEMVKFVKPESSDDELEKLVNNAETVLQLLGLPYRLILLSTGDISFAASKCYDL
                     EAYASGLNKWLEVSSCSNFEGFQARRANIKYRKKDKKVEYVHTLNGSGVALARTMIAI
                     LENYQQPDATILIPEVLRPYMNGKERITL"
     gene            complement(2166..3620)
                     /locus_tag="VJA84_04060"
     CDS             complement(2166..3620)
                     /locus_tag="VJA84_04060"
                     /EC_number="6.5.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018205230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008452 - RNA ligase activity [Evidence
                     IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RtcB family protein"
                     /protein_id="HLD41334.1"
                     /translation="MFELYEHLEKIDDYRWRLPKGAKPGMQVDGIVYADAKLLDDIKK
                     DKALEQVANVAFLPGIVSASLAMPDIHWGYGFPIGGVAATDPQNGGVVSPGGVGFDIN
                     CGIRLVRTDLEYEDVKDKIEKLVYALYNDIPSGVGSKGEIRVGAKEEKEIMLKGSGWA
                     VAKGYGVAADLEVTEENGAISGADPCAVSERAYERGKAQSGTLGSGNHFIEVQVVDMV
                     YEPELADAFGLRQGQITLMIHSGSRGFGYQVCEDYVRKMLSCPQKYGINIPDRQLACA
                     PVDSPEAKEYLAAMRAAANYAWNNRQCLMHLARKSFERVFGMGWQKLGMDLIYDVAHN
                     IAKLEKHKVKGKEKLLCVHRKGATRAFPPGHPELPAKYQKTGQPVIIPGDMGRNSYLL
                     VGTEKASETFYSTCHGAGRVKSRTAAAKAFNAEKLVRDLESQGIFVKASGRGTIVEEA
                     PLAYKDVNEVVNVVDRAGISKKVCRMRPVGVVKG"
BASE COUNT          960 a         1051 c          809 g          945 t
ORIGIN      
        1 gcgaagaaag acattttaaa ccttattaca tcgcgcatac caaaattcaa accctcgcac
       61 tcttagacga tgagcacaag ggttcgaatt ggtacggatg gcggagaggg tgagattcga
      121 actcacggtg gagttgcccc cacaacagtt ttcaagactg ccgctttcaa ccgctcagcc
      181 acctctccag attattatag aaatagctgg cggaataccg ccaggtaaat gcctttgctt
      241 agctggtaag aaccgttaaa gaagttaagg aaggagaaat gctcaaaagc caggttaaaa
      301 aataaagata acaacagcgc gtccaggata taaatacagc caaagccgaa gatataattg
      361 gacttaagct tatccccgct cttagcgcgc agggtcttgg cgcagaagac taagtgcaag
      421 gccaggctga agcctatccc gaaaataaac agcgggataa attctttcat cccgaaaaat
      481 tgcaggccaa taaaatagcc cgctgaaatc aaaatggtat aaataggcaa gacaaacgag
      541 gcgaccttaa ccaaaggagc aaagaaacga aagatcacct ctaagaccct ttggcctttc
      601 ttaaagataa ttaccggctc ccagacaaac agatacatca ccaggaaacc aataatcccc
      661 cagacaaacg ggcgcacagc cgcgccttcc agctttgcca gctcaccgct aaaacaaagg
      721 gttgccgcgt aaagcgccgg caacagacat attcctattg ccagtttaag agagataaga
      781 aaaaactcat taatctgatt ctttgacggc ggctttaggt cgctaaaaac cttttccggc
      841 ggcgcttttt taggattaaa catacgcata tctcaaaggg taattctttc cttaccgttc
      901 atatatggcc ttaagacttc cggaatcaaa atcgtcgcgt cgggctgttg ataattctcc
      961 aggatggcaa tcattgtcct ggccagggct accccggagc cgtttaaggt gtgcacatac
     1021 tccacctttt tgtctttctt gcggtatttg atatttgccc gcctggcttg aaaaccctca
     1081 aaattactgc aactggaaac ctccagccac ttattcagcc ccgaggcata ggcctccagg
     1141 tcataacatt tgctggcggc aaagctgata tccccggttg aaagcaaaat cagcctgtaa
     1201 ggcaggccca aaagctgtaa gaccgtctcg gcattattga ctaatttctc caattcatcg
     1261 tccgagcttt ccggcttaac gaatttcacc atttccacct tgtcaaactg gtgcacccgc
     1321 ataagacccc gggtgtcctt gccgtaagaa cccgcctccc ggcggaaaca ggcggtatag
     1381 gcagtataat atatgggcaa atcctcttcg ttaagtatct cgtcgcggaa gatattggtt
     1441 aacggcacct cggcagtggg aatcaggaac aaatcatcgt ctttaagcct atacatatca
     1501 tcttccagct tcggcagctg cccggtgccg gtcattgagg cccggtttac cagaaaaggc
     1561 gggaatatct ctttatatcc gtgttgagaa gtatgcagat ccaacataaa attatacaat
     1621 gcccgctcta agcgggcgcc ttcgccttta taaaggatga aattagagcc ggtaagcttg
     1681 gccgcccggt taaaatcaat gatatctaag tgttccgcca actcaatatg gcttctgggg
     1741 ttagctatct tacgaggctc gccccaggtt cttacgactt tatttaccga ggcatctccc
     1801 accggtattg aagaatgcgg gatattgggg acagtcaaaa ggatgcggct tatccgcggc
     1861 tcaatctctc ttaattccgc ttccaagagg tctatcttgg cggcgatatc tttcattgag
     1921 gcaattcttt ctttagggtc tttcttctcc ttcaaaatct ttgagatctc atcattggcc
     1981 ttgttctttt ccgcccgcag gccctcaagc tcaaacaaga ccttctttct tttatcatcc
     2041 agctcaataa ggccgtccag ctctaggccg gaccggcggt tcttaagcgc gagcctcact
     2101 atgtcgctat tctcccgtat gaattttagg tcaagcatct ttcttcaaca gctcctttgg
     2161 tttccctaac ctttcacaac cccgaccggc cgcatccggc agactttctt ggaaatcccg
     2221 gcacggtcaa ccacatttac cacctcatta acatccttat aggcaagagg ggcctcttca
     2281 actattgttc cccggccgga ggccttgaca aatatccctt gagattctaa atcccggact
     2341 aacttttccg cgttaaaggc cttggcagcg gcagtgcgcg acttcacccg gcccgcgccg
     2401 tgacaagtgg aataaaatgt ttcagaggcc ttttccgtgc caaccagaag ataggaattc
     2461 cggcccatat ccccggggat gattaccggc tggccggtct tctgatattt cgccggcagt
     2521 tccgggtgcc cgggaggaaa ggcccgggta gcccctttac ggtgcacgca caaaagcttt
     2581 tcttttccct taaccttgtg tttctccagt ttagcgatat tatgggccac atcataaatc
     2641 aggtccatcc ctaatttctg ccagcccatc ccaaatacgc gctcaaagga cttgcgggcc
     2701 agatgcatca aacactggcg gttattccag gcgtagttgg ctgccgcgcg catcgccgcc
     2761 agatactcct tggcttccgg agaatctacc ggcgcgcagg ccaactgcct gtccgggata
     2821 tttatcccgt atttctgcgg gcaggaaagc atcttccgga catagtcctc gcaaacctga
     2881 tagccgaatc cccgtgagcc ggaatggatc attagggtta tctgtccctg ccttaagcca
     2941 aaggcatcgg caagctccgg ttcataaacc atatccacca cctggacttc tataaaatga
     3001 ttaccgctgc ctaatgtgcc ggactgggcc tttccccttt catacgccct ctcggaaacc
     3061 gcgcaagggt cagccccgga tatcgccccg ttttcttcag taacctccaa atccgctgcc
     3121 accccatagc ccttagccac cgcccagccg gagcccttaa gcattatctc tttttcttct
     3181 ttcgcgccca cccggatttc gcctttagaa ccgacgcccg atggtatatc attatacaag
     3241 gcatagacca atttctcaat cttatccttt acatcttcat attccaggtc agtgcgcact
     3301 aagcgtatcc cgcaatttat gtcaaaaccg actcctccgg gagaaactac cccgccgttt
     3361 tgggggtcgg tcgcggccac cccgccgata gggaaaccgt aaccccagtg gatatccggc
     3421 atagccaaag aagcgctgac tattcccggc aggaaagcca cattagccac ctgctccagg
     3481 gccttgtcct tcttgatgtc atcaagcagt ttagcgtcgg catagacaat cccgtctact
     3541 tgcatccccg gcttcgcgcc cttaggaagc ctccagcggt aatcgtcaat cttctctaaa
     3601 tgctcgtaaa gctcaaacat caaaaatcac cctggcccgg aaaccatctt tagtcttttt
     3661 gaattccaat tcatgataag taaccgcctt gatctcggtt tttaccttat tataggacag
     3721 cttttggcca aaggcaacgg ctttgattat tttgtcattt aattc
//
LOCUS       DATDUB010000203         2972 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_990570, whole genome shotgun sequence.
ACCESSION   DATDUB010000203 DATDUB010000000
VERSION     DATDUB010000203.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2972)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2972)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2972
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_990570"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1001)
                     /locus_tag="VJA84_04065"
     CDS             complement(<1..1001)
                     /locus_tag="VJA84_04065"
                     /inference="COORDINATES: protein motif:HMM:NF024583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing protein"
                     /protein_id="HLD41335.1"
                     /translation="MKSSSLFSRGIKQRLFAAVCLMSIIPILICLNFIFPSLFISFTA
                     KTNLAVILPAMVFIALLGFILARQIVEPVAALSRDAQKMSEGDTELRVEVSGNDEIGR
                     LGAALNQLSSKIRDTMSELENYGTKTAQINLEIQKRIVVMSHLLQITTLISQNEKLDN
                     IMQVCVEKLKGLEDSALSFVFFLEDGRFSLKAQCGLAADIDNQVYFSQGYPALADVFK
                     SGNASVLRIDKGEPQHQKFVSLLGAKILLCLPIFLEGRPKAVLGIGSAILDYEYNRDH
                     RELLDIFGKQASVAIENDYLLEKVRNLEIRDELTGLYNERFIRGYLDDEIKRSIIYQ"
     gene            complement(1164..2864)
                     /locus_tag="VJA84_04070"
     CDS             complement(1164..2864)
                     /locus_tag="VJA84_04070"
                     /inference="COORDINATES: protein motif:HMM:TIGR03960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03960 family B12-binding radical SAM
                     protein"
                     /protein_id="HLD41336.1"
                     /translation="MDIEKWLEGVLLEVRKPARYIGNEWNVVRKDLSKQEGRFAVCFP
                     DLYELGMSNLGLRIIYGLLNEQPGVSCERVFLPDVDLQALLKKDNVPLFSLESKAPLS
                     EFDFLGFSLSYELGYTNVLAILDLAGIPLLAKERDLSYPLIIAGGSCVSNPEPMADFV
                     DLFLIGEAEEALLEIVEKYKQTRTTKENILRSLAGIDGVYVPSFYEQEYNSDGSFKGL
                     LPKYPDIPVKINKRIVRDLNQAYYPAKWMVPYIPVVHDRAAVELMRGCPHCCSFCQAR
                     SVYHSLRLRSPEKVVQLSREALSSSGYEELSFLSLSTSEYPYLNKVIASLGRELEQKG
                     VSVSLPSLRPKSYLGELVEYLAKVRKTTLTFAPEAGSQRLRQSINKNFSMEEFFSAVS
                     QAYKNGWQAIKLYFMIGLPGEDYSDLDGILEIAQKVSSLKKEFSRYSAEVRLSLSFFV
                     PKPHTNFEREAMGFEEALRGKAAYLKDKSRGLSKKIRLDFHNLKTSVLEAVFSRGSRR
                     LGEVVLKAYRNGAILDGWSEHFKPDAWGEAFKECSLRPDDYLSQKHAEESLPWQHIVL
                     "
BASE COUNT          830 a          807 c          610 g          725 t
ORIGIN      
        1 ctttgataaa ttattgagcg cttaatctca tcatcaagat agccgcggat aaatctttca
       61 ttgtagagcc cggtaagttc gtcgcgtatc tcaagattac gcaccttttc taaaagataa
      121 tcattctcaa tagccaccga ggcctgcttg ccgaagatat ccagaagctc ccggtggtcc
      181 cggttatatt cataatctag aatggcgctg ccgatgccta agactgcctt aggccggcct
      241 tccaggaata tcggcaggca caacaggatt tttgccccca aaagggaaac aaacttctga
      301 tgctggggtt cccccttatc tatccgcagg acagacgcgt ttccggattt aaacacatcc
      361 gccagggcgg gatagccttg agagaaataa acctgattgt ctatgtccgc cgcgaggccg
      421 cattgcgcct taaggctgaa cctgccgtct tccagaaaga agacaaaaga taatgccgaa
      481 tcctccaggc ctttaagctt ttccacgcag acctgcatga tattatccag tttttcattc
      541 tggctaatca gggtagtaat ctgcaggagg tgagacatca ccacaatcct cttctgtatc
      601 tccaggttta tctgggcggt cttggtcccg taattctcaa gctcgctcat agtgtcccgg
      661 attttagaag agagttgatt caaggccgca cccagcctgc cgatctcgtc attaccggaa
      721 acttccacgc gcagttcggt atcgccttcg ctcatctttt gggcgtcccg gcttaaggcc
      781 gccaccggct caacaatctg ccgggcaagg ataaaaccca acaaggcgat aaaaaccatc
      841 gccggcaata ttaccgcgag attagtctta gccgtaaaag agataaaaag gctggggaag
      901 atgaaattca ggcaaataag tatggggata attgacataa ggcagaccgc ggcaaacaat
      961 ctttgcttta tcccccggga aaaaagagaa gatgatttca tagtcttagc ctcctgttaa
     1021 aggtcaacaa taaatggtct atagcctata gtcgataata aaagataaat aatgccagtt
     1081 caccagagca ccagagcaca ataacttgcg cgcttgtgac ccgtaattat taaactatat
     1141 tataacacac attttcccgc aaactataaa acaatatgct gccagggcag gctctcttcg
     1201 gcgtgtttct ggctcaaata atcatccggc cttaaagaac attccttaaa agcctcgccc
     1261 caggcatcag gcttgaaatg ttcgctccaa ccgtctaata tagcgccgtt tctataggcc
     1321 ttaaggacaa cctccccaag cctgcggctg ccgcgggaaa acaccgcctc taaaacactg
     1381 gtcttaagat tatggaaatc cagccttatc ttcttagaca aacctctgga cttgtcctta
     1441 aggtaggcgg ctttcccgcg caaggcctct tcaaacccca tcgcctctct ttcaaaatta
     1501 gtatgcggct tggggacaaa aaaagacagg cttaaacgca cctcggccga ataacggctg
     1561 aattcctttt tcaaagaaga aactttttgg gcaatctcca atatcccgtc taaatcgcta
     1621 taatcctcac cgggcaggcc gatcataaaa tacagcttta tcgcctgcca gccgttttta
     1681 taggcctggg aaaccgcgct aaaaaactcc tccattgaaa aattcttgtt tatggactgc
     1741 ctcaaccttt gactgcccgc ctccggggca aaggtaaggg tggtcttacg caccttagcc
     1801 aggtattcta ccaattctcc caggtaactc ttaggccgca atgaaggcag agacaccgaa
     1861 accccctttt gttccaattc ccggcctaaa gaggcaatga ctttattcag ataaggatat
     1921 tcgctggtag aaagactaag aaaagacagt tcttcatatc ccgacgaaga aagcgcctcc
     1981 cggcttaatt gaaccacctt ttccggggaa cgcagcctta aagaatgata aacgctcctg
     2041 gcctgacaga aactacaaca gtggggacag ccgcgcatca actccactgc cgcccggtcg
     2101 tggaccaccg ggatataagg gaccatccat ttcgccggat aataggcctg attcaaatcc
     2161 ctgactatcc gtttatttat ctttaccggt atatccgggt atttcgggag aaggccctta
     2221 aacgaaccat cgctattata ctcctgctca taaaaggaag ggacataaac accgtctatc
     2281 ccggccaatg atcttaaaat attctctttc gtggttcgtg tttgtttata cttctcaaca
     2341 atctccaaaa gggcctcttc cgcctcgcca atcaggaaca aatccacaaa atccgccata
     2401 ggctcgggat tgctcacgca ggagcctccg gcaataatca agggatagct caaatccctt
     2461 tccttagcca acaaaggtat gccggccaaa tccaggattg ccaggacatt ggtatagccc
     2521 agctcatagc ttaaagaaaa ccccagaaag tcaaactccg ataaaggcgc cttggactcc
     2581 agggaaaaaa gagggacatt atctttcttc aacaaagcct gcagatccac atccggcaag
     2641 aaaaccctct cgcaggacac ccccggctgt tcattaagca ggccgtagat tatcctaagc
     2701 cccaggttac tcattcccaa ttcataaagg tcgggaaagc agacggcaaa cctgccctcc
     2761 tgcttagaaa gatcctttct taccacattc cactcattac caatataccg ggccggcttc
     2821 ctcacctcca aaagcacgcc ctccagccac ttttcaatat ccatatttat tcttatgtta
     2881 ttaactaatc ctacgatttt cgcagcgaat gtcgatttta gccaaagcgg ctttcggatt
     2941 ttcgggaatc ccgattgtcc tctgccgcag gc
//
LOCUS       DATDUB010000204         2365 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_145164, whole genome shotgun sequence.
ACCESSION   DATDUB010000204 DATDUB010000000
VERSION     DATDUB010000204.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2365)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2365)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2365
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_145164"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..214
                     /locus_tag="VJA84_04075"
     CDS             <1..214
                     /locus_tag="VJA84_04075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41337.1"
                     /translation="LADRLLNEASGYELPKQSQVLSLILPQENNPAVLKEAKANWAFK
                     LQESWPIVLVKSYVNKQALGLQDSNR"
     gene            226..1932
                     /locus_tag="VJA84_04080"
     CDS             226..1932
                     /locus_tag="VJA84_04080"
                     /inference="COORDINATES: protein motif:HMM:NF013100.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding transpeptidase
                     domain-containing protein"
                     /protein_id="HLD41338.1"
                     /translation="MHTSLSHRRLLATIFFFLFLFVSCALRILYIKFFKSKYLSNIAE
                     AQHNLYVELESLRGTIYDRNMKPQAFNLPCDSLYASPRQIKDKEKAVKALREVLGLED
                     GYLKSRLSRDKGFVWIGRKLAPEKVRAVKSLKLKGLDFIRESKRCYPNKSLASQEIGF
                     AGLDNTGLEGIELAYNDYLKGEPGWAHVLRDSRQNKLLWEKMTLPKDGADIILTIDEF
                     IQFVAERELERAYKTFRAQGASVIVMNPHTGEILAMANRPGYDPNHPQAASLDSRRNR
                     AICDMFEPGSVFKIVTAAAALEEKRFNEADRFFCENGAYRVANHILHDHHPHGWLTFS
                     GVFSESSNIGTTKIAQALGPDVVYKYASAFGFGRVLGIDIAGEIPGVLKDPKVWSKTS
                     IGAVPIGQEVGVTALQLVSAISVIANGGVLMRPYIVKAIQGAQGEVIKEFEPQIIRKV
                     ISLQTAERVRDILVMAIEKGTGKSARVEDFKTAGKTGTAQKIEANGAYSHSKYIASFI
                     GFAPVDDPLIAVVVTVDEPRPYYFGGVVAAPVFKRIAQDAVKYLKLRKEGNAIAELAK
                     KD"
     gene            1901..>2365
                     /locus_tag="VJA84_04085"
     CDS             1901..>2365
                     /locus_tag="VJA84_04085"
                     /inference="COORDINATES: protein motif:HMM:NF013396.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016881 - acid-amino acid ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Mur ligase domain-containing protein"
                     /protein_id="HLD41339.1"
                     /translation="MRLRSLLKRIDPESDCGADLEISGIFANSKEVKAGSLFAAVKGV
                     KADGNEFIAEAVANGAVCVMAEDICLAGKYPEVEFVRVKDSRQALAVLADEFFNHPSG
                     RIKVVGITGTNGKTTITYLIRAILEQAGLSSGIIGTINYSFKDKVLPAVNTTP"
BASE COUNT          576 a          552 c          657 g          580 t
ORIGIN      
        1 tctggcggat agactgctta acgaggcatc cggatatgag cttcctaagc agtcgcaggt
       61 attgagcttg attctgcctc aagaaaataa tcctgccgtc cttaaagagg caaaggcgaa
      121 ttgggctttt aaacttcagg aaagctggcc aatagtttta gtcaaatcct acgttaataa
      181 acaggccctg ggccttcagg attctaatag ataaataatc taagcgtgca caccagctta
      241 agccatcgtc gtctcctggc gaccattttt ttctttttgt tcctctttgt ttcctgcgcg
      301 ctccgcatcc tctatatcaa gtttttcaaa tccaagtatc tctccaatat cgccgaagcc
      361 cagcacaatc tttatgttga gcttgagtct ctgcgcggga cgatctatga ccgcaatatg
      421 aaaccccagg cctttaacct gccctgcgat tccttgtatg cctcgccccg ccagataaag
      481 gataaggaaa aggcagtcaa ggccttaaga gaggttttag ggctggagga cggctattta
      541 aaaagccggc tctcccggga caagggattt gtctggatag gccgcaagct tgccccggaa
      601 aaggtcaggg cggtaaagtc gcttaagctt aaaggcctgg actttatccg ggaaagcaaa
      661 cgctgttatc ccaataaaag cctggcctcc caggaaatcg gctttgccgg gctggataat
      721 acgggcttag aagggattga gcttgcctat aacgattatc ttaagggaga acccggctgg
      781 gcccatgtct taagggattc ccgtcagaat aaactgcttt gggaaaagat gaccctgcct
      841 aaggacggcg cggacattat cttgaccatt gatgaattta tccagtttgt ggccgagagg
      901 gaattggaaa gggcatataa gacctttcgc gctcaagggg cctcggtgat tgttatgaac
      961 ccccataccg gagagatcct ggctatggct aaccggcctg gctatgaccc taatcatccg
     1021 caagccgcga gtttggactc ccggcgcaac cgggcgatat gcgatatgtt tgagccgggc
     1081 tcggtgttta agatagttac cgccgccgcg gccttggaag aaaaaaggtt taacgaggcg
     1141 gatcgtttct tctgcgagaa cggcgcttac cgggtggcta accatatcct gcacgaccat
     1201 catccccacg gctggcttac ctttagcggg gtgttcagcg aatccagcaa tatcggaacc
     1261 actaagattg cccaggcgct tggcccggat gtagtctata agtacgccag cgcctttggc
     1321 tttggccggg ttttagggat tgatatcgcc ggagagatac ccggggtatt gaaagatccg
     1381 aaggtctggt ccaagacttc tatcggcgcc gttccgatag gccaggaggt cggggttacg
     1441 gcgttacagt tagtgagcgc catatccgta attgctaacg gcggagtatt gatgcggccg
     1501 tatattgtta aggctattca gggcgcgcaa ggagaggtga ttaaggaatt tgagccccag
     1561 attatccgta aggttatttc tcttcagaca gccgaaaggg tgagagatat tttggttatg
     1621 gctattgaaa aagggaccgg taaatcagcc agggtggaag attttaagac cgcgggaaag
     1681 accggcactg cccagaagat agaggctaac ggagcttatt cccacagcaa gtatatcgcc
     1741 tcttttatcg gatttgcccc ggtggatgac cctttgattg ccgtggtggt taccgtggat
     1801 gagccgcggc cttattattt tggaggggtg gtggcggccc cggtgtttaa acggattgcc
     1861 caggacgcgg taaaatatct gaaactgcga aaggaaggca atgcgattgc ggagcttgct
     1921 aaaaaggatt gatccggaaa gcgactgcgg agcggatttg gagatttccg ggattttcgc
     1981 caattctaaa gaggtcaagg ccgggtcatt gtttgccgcg gtcaaagggg taaaggctga
     2041 cggaaacgag tttattgccg aggcagtcgc gaacggcgca gtctgcgtga tggcggagga
     2101 tatctgcttg gctggtaaat atcccgaagt agagttcgtc cgggtcaagg acagccgtca
     2161 ggccttagcg gtcttagccg atgaattctt taatcatccc tcgggacgga ttaaggttgt
     2221 gggaatcacc ggcactaacg gcaagaccac tatcacctat cttatccggg ccatccttga
     2281 acaggcaggt ctgtcttcgg gtataatcgg gactattaat tattcgttta aggacaaagt
     2341 cctgccggct gttaatacca ccccc
//
LOCUS       DATDUB010000205         3059 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_2491758, whole genome shotgun sequence.
ACCESSION   DATDUB010000205 DATDUB010000000
VERSION     DATDUB010000205.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3059)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3059)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3059
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2491758"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(160..1197)
                     /locus_tag="VJA84_04090"
     CDS             complement(160..1197)
                     /locus_tag="VJA84_04090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014959067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPFH domain-containing protein"
                     /protein_id="HLD41340.1"
                     /translation="MSRFNLLTKLVVIFILLLVFAAYFPHHTKSTEVGVRVIKWSPFR
                     SRGVDKQIYAPGATYFFPPIINEWYVFDTKLQNMEMTATSYRGARQGRDDLVFKTVDG
                     NDIALDAIIAYRIDPVKAPDILINTAQSNRELEEKLVRPITRNVTREFFGELKTEDFY
                     VANKRADKAEAAKNVLNKILNPHGVIVESILPKDYRFKDAYQRAIEDKKIADQMVERF
                     KSEVKATVEEYLQKLQQTGGEVNKMVADVDGEYKKAKIEADAYYEQQTMIAKAIENEG
                     VAQAKGIEKMVEALNSSGGKTMIKLKLAEALSGKRIFLLPFGDSGEIDLKTTNVNDLL
                     KIYGMKGLEKN"
     gene            complement(1194..2288)
                     /locus_tag="VJA84_04095"
     CDS             complement(1194..2288)
                     /locus_tag="VJA84_04095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020588549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPFH domain-containing protein"
                     /protein_id="HLD41341.1"
                     /translation="MARNDFGLDSAEKWFNTFTAAFRKVLSMGFLPIVIVMAAMILLR
                     IFFVYIGPNEYGIKQVNIGLKTGIHSEVYHTGLHFLIPFGFEIMHRFPRELQVFELTD
                     SSETASGGARMEKAAHIQTSDGFFVDVDVSILYHITDPYKVITTIGPGRLYEDNGIIP
                     KVESKLKETLGEMTTEEFYNSPLRAEKAREAEAMLNAELNPKGIKVDYVLVRYFRYSE
                     EIQRNIEEKKLKDQLVFTNQSKAKASAEEALVKKVRQEGEVNLRIKIEEGRAYVVKKN
                     AEKDLYLRTKKAEADLLMSLSEAKKTELINTAYQQRGSDKLVGLKMAEVYKGLDVIML
                     PSSGKYGINPLDLESSLRLFGVEEKEGQLK"
     gene            complement(2303..>3059)
                     /locus_tag="VJA84_04100"
     CDS             complement(2303..>3059)
                     /locus_tag="VJA84_04100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003544065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="lyase family protein"
                     /protein_id="HLD41342.1"
                     /translation="ISGAVGTYSNIDPFVEEYVCRKIGLSPARISTQIISRDIHAQFI
                     NTLAVIGASLEKFATEIRHLQRTEVLEVEEPFGKGQKGSSAMPHKRNPVICERICGLS
                     RILRTNALAALENVSLWHERDISHSCVERVIFPDSTIALDYMIYKFIEVVEGMTVYPG
                     NMLENLSRTNGLIFSQRLLLVLMEKGLARSSAYDLVQALAMKSWKERSDFKALVLADK
                     GISKRLNREEIESCFELDYYLRNIDVIFDRLGL"
BASE COUNT          779 a          843 c          606 g          831 t
ORIGIN      
        1 cccaatagcg tcaaacacgc cttctttttc cgaaacccgt atcttataac cggtcatatt
       61 aatttattgc tatcccaact acctgtcatg cccgtgaaaa cgggcatcca gaaatactta
      121 atccccgaaa gctggattcc cgcttccgcg ggaatgacat cagttttttt ctaatccctt
      181 catcccgtaa atcttaagca ggtcgttgac attagtggtc tttaaatcaa tctctccgga
      241 atcgccaaac ggcaggagaa aaatcctttt tcccgaaagg gcctcggcga gcttcagctt
      301 gatcatcgtc ttgccgccgg atgagttcaa ggcctctacc atcttctcaa ttcccttggc
      361 ctgggccact ccttcgtttt caatggcctt ggcaatcatt gtttgctgtt cataataggc
      421 gtcggcttct atcttggcct ttttatattc accatcaaca tcagcaacca ttttattcac
      481 ttctccgcct gtctgctgga gcttctggag atactcctcc acggtggcct taacctctga
      541 cttaaaacgt tccaccatct ggtcggcgat ctttttatcc tcaatggccc tctggtaggc
      601 atccttaaac cggtaatcct tgggcaaaat gctctccaca ataaccccgt gaggattaag
      661 gattttattc aagacattct tagcggcctc ggctttgtcc gcccttttat tggccacata
      721 aaagtcctcg gtctttaact cgccgaaaaa ttcccgggtc acattcctgg taataggccg
      781 caccagcttt tcctccagtt cgcgattgct ctgggcggta ttgattagga tatccggggc
      841 cttgaccggg tcaatgcggt aggcgataat ggcatctaaa gcgatatcgt tcccatccac
      901 agtcttaaac accaggtcat ccctgccctg cctggcgccg cgataagaag tggcggtcat
      961 ttccatattc tgcagtttgg tgtcaaagac ataccattca ttgatgatgg gcggaaaaaa
     1021 ataagtggct cccggggcat aaatttgttt atccactcct ctggagcgaa aaggagacca
     1081 ttttatcacc ctcaccccca cttccgtgga tttggtatga tgagggaaat aggccgcgaa
     1141 aaccaacaat aagataaata taaccactaa cttagttaac aggttaaatc tgctcatttt
     1201 aactgcccct ctttctcttc caccccgaaa agcctcaaag aactctccag gtcaagcggg
     1261 tttatcccgt acttgccgct tgagggaagc ataatcacat ccaaaccctt atacacctcg
     1321 gccatcttaa ggccgaccag cttatccgag cccctttgct gataagccgt attgatcaac
     1381 tccgtcttct tggcctcgga gaggctcatc aagaggtctg cctcggcctt tttggtgcgc
     1441 aggtaaaggt ccttttcggc attcttcttg actacatagg cccggccttc ctcaattttt
     1501 attctcaagt tgacctcgcc ttcctgccgg accttcttaa ccagggcctc ttcagcagag
     1561 gccttagctt tagattggtt ggtaaacacc agctggtcct taagtttttt ctcttcaata
     1621 tttctctgta tctcctcact gtacctgaaa tagcgaacca aaacataatc caccttgatc
     1681 cctttaggat tcagctccgc gttcaacata gcctctgctt ccctggcctt ctccgctcgc
     1741 aaggggctgt tataaaactc ctcggtagtc atctcgccca aagtctcctt aagtttagac
     1801 tcaaccttag ggataatccc gttatcctca tataatcttc ccgggccgat agtagtaatc
     1861 accttataag gatcagtaat atgataaaga atacttacat ccacatccac aaaaaatccg
     1921 tcagaggtct ggatatgcgc cgccttttcc atccgggccc ctccggaggc ggtttccgag
     1981 gaatcggtca gttcaaagac ctgcagttcc cggggaaagc gatgcataat ctcaaagcca
     2041 aaagggataa gaaaatgcag gccggtgtga tagacctcgc tgtggatacc tgtttttaag
     2101 ccgatattta cctgttttat gccgtattcg ttgggcccga tatagacaaa aaatatcctt
     2161 agcaatatca tggccgccat aacaataact ataggcaaaa atcccataga caaaactttc
     2221 ctgaaagcgg cagtaaaggt attaaaccat ttttccgccg aatcaagacc gaaatcattc
     2281 ctcgccattt agaacctcct cattacaacc ccaacctatc aaatatgaca tcaatattgc
     2341 gcagatagta atccagttca aagcaggact caatctcttc gcggtttaaa cgcttagaaa
     2401 tacctttatc cgccaatacc agggccttaa aatccgacct ttccttccag ctcttcattg
     2461 ccaaggcctg gaccaagtca taggccgagc ttcgcgccag gcctttctcc atcaaaacca
     2521 gaagcaatct ctgtgaaaaa atcaaaccgt tagtgcggct gagattctcc agcatgttcc
     2581 cgggataaac cgtcattccc tcaacaacct caataaactt ataaatcata taatccaggg
     2641 cgattgtgga atccggaaaa atcacccttt caacgcaaga atgactgata tcccgctcat
     2701 gccagagact gacattctct aaggccgcca acgcgttcgt cctcaagatc ctgcttaggc
     2761 cgcagatacg ctcgcagatg accgggttgc gtttatgcgg cattgccgaa gagcctttct
     2821 ggcctttgcc aaaaggctcc tccacctcta aaacttcagt gcgctggaga tggcgaatct
     2881 ccgtggcgaa tttctctaag gaggccccga taaccgctaa ggtattgata aactgggcgt
     2941 gaatatcccg ggagataatc tgggtggaaa tcctggccgg acttaggcct atttttctgc
     3001 agacatattc ttccacaaag gggtcaatat tggaatatgt tcccaccgcg cctgaaatc
//
LOCUS       DATDUB010000206         3460 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_148304, whole genome shotgun sequence.
ACCESSION   DATDUB010000206 DATDUB010000000
VERSION     DATDUB010000206.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3460)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3460)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3460
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_148304"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            133..1227
                     /gene="aroB"
                     /locus_tag="VJA84_04105"
     CDS             133..1227
                     /gene="aroB"
                     /locus_tag="VJA84_04105"
                     /EC_number="4.2.3.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR01357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003856 - 3-dehydroquinate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="HLD41343.1"
                     /translation="MKEIKISLKSRQDYSIIIGNNILKNIPAYLNSLKLPKEIFIVTN
                     TLIKKKYGKELNSSLRKGGFSSRFYTVIDSEKAKSISSAVRLVGTLADYARHKKITVF
                     AFGGGVVGDLASFIASIYKRGVPLVHIPTTLLAQIDSGIGGKTAIDLAIAKNLVGTFY
                     QPRLVICDLRLLASLDKRQIRSGLAEAIKYAVIKDRKLFSFLEGRFHSIFSRDIPTLE
                     HLVYECARIKAGIVGLDEKEEKGVRTILNFGHTIGHAIEAAGGYAKYSHGEAIALGMI
                     AASRISRNLGMLRPETLARVLNLITNIGLPQEISDIKEKDVLKAYKLDKKFIGRTNRL
                     VLIKDIGITRVCQNISEKAINNAIRELFIL"
     gene            complement(1229..1789)
                     /locus_tag="VJA84_04110"
     CDS             complement(1229..1789)
                     /locus_tag="VJA84_04110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41344.1"
                     /translation="MSIIYEALKKVQGKSDPAAVAPVQAAGKAAAANSPLRKSTAVRT
                     VILLLVFLTLGMFLIEILINRSFSARAKKEQALPIAASYTPPDYRPIVFDHPPAPFPL
                     LSISPAPAQTNPKEPITSAEQFVAEPQPQLVLNGIVLSEEGNIALINDQILKVGDTVE
                     GARVEEIFGNQVVLSSKAQKITLKAK"
     gene            complement(1786..2613)
                     /locus_tag="VJA84_04115"
     CDS             complement(1786..2613)
                     /locus_tag="VJA84_04115"
                     /inference="COORDINATES: protein motif:HMM:NF024793.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HLD41345.1"
                     /translation="MYLQYYGLKEKPFNVTSDPSFFFLSRRHKEAIACMSYGINERKG
                     LITVTGEIGIGKTTMCRTLLSQLDKSIKTALVINPYFSEVQLLELIVQDFGISLKKRS
                     RLGLINALNDFLLSQASLGNNAVIIIDEAQNLTCRQLEQVRLLSNLETDKEKLLQIVL
                     VGQPELRKKLELFELRQLKQRVMVDYHIEPLEEDELDDYIYHRLDTACLNPRDKRIEF
                     DPDAFRDIYSFSQGVPRLINLLCDRALLLSFIKEKSRIARDIISECVKDIRVTPQTE"
     gene            2699..3127
                     /locus_tag="VJA84_04120"
     CDS             2699..3127
                     /locus_tag="VJA84_04120"
                     /inference="COORDINATES: protein motif:HMM:NF018894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035438 - cyclic-di-GMP binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HLD41346.1"
                     /translation="MCKATAPVKTKEKHSARSGKCLKRRTLAMYVTPWQERRKDFRLK
                     DYLPLHYELKAPNRYGNAITQDISESGTRLLLDNFIPRFSKVALQINLHPDKQFQVNG
                     EVKWAERMQHSYRYQTGVEFKNLNLENKRNLEKFIAENRF"
     gene            3147..3317
                     /locus_tag="VJA84_04125"
     CDS             3147..3317
                     /locus_tag="VJA84_04125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41347.1"
                     /translation="MAEEKKDKKERFGNCGGCNKPIKKVRRYYRNNKYFCTAKCYKTY
                     LEKSPAKQSAPA"
BASE COUNT         1008 a          821 c          813 g          818 t
ORIGIN      
        1 aatataaatt tctaaaccct tgcctaagcg ctcgtaaatt tctgcgaaat ttacttcgca
       61 ggccgcggga taattcgcgc aatgacttac gttcactcgc tttgctcgtt ccgtaagtca
      121 cgcgctcatt aaatgaaaga aatcaagatt agcttaaaaa gccggcagga ctattctatt
      181 atcatcggca ataatatact taagaatatc cccgcctatt taaactccct taaactgccc
      241 aaagagatat ttatagttac caacaccctg attaaaaaga aatacggcaa agaactaaat
      301 tcaagcctaa gaaaaggcgg attttcatcc cgcttttata ccgttataga cagcgagaag
      361 gccaagtcca tatcaagcgc cgtccgatta gtgggaaccc tggcggacta cgcccggcac
      421 aaaaagataa ccgtattcgc ctttggaggg ggagtggtgg gcgatctggc cagctttatt
      481 gccagcatct acaagcgggg ggtgccgcta gtgcatatcc cgacaaccct gcttgcccag
      541 atagactccg gcattggggg caagaccgcg attgaccttg ctatagccaa aaatctggta
      601 gggacatttt atcagccaag attagttata tgcgacttaa ggcttttggc aagcttagac
      661 aaaagacaga taaggtcagg cctggccgag gcaataaaat acgcggtcat taaagatagg
      721 aaattatttt cgtttctgga gggacgcttt cactctatat tttcccggga catccccacg
      781 ctggaacatc tggtttatga atgcgccagg ataaaggccg ggattgtagg attagacgag
      841 aaagaagaaa aaggcgtcag gacaatcctt aacttcgggc acaccatcgg ccatgccatt
      901 gaggccgccg gaggatacgc caaatacagc cacggagagg ccattgcctt aggaatgatt
      961 gccgccagcc ggataagccg gaatctggga atgctgcggc ctgaaacctt agcccgagtc
     1021 cttaatctta tcactaatat cggactgccc caggaaataa gcgatatcaa agaaaaagac
     1081 gtcttaaagg cctataaatt agataagaaa tttatcggca ggactaaccg cctggtgctg
     1141 atcaaagaca tcggcattac ccgcgtctgc cagaacatct ccgaaaaggc aatcaataac
     1201 gctatccggg aattatttat tttgtaaatt atttcgcctt cagggtaatc ttttgcgcct
     1261 tggaggaaag gaccacctgg ttcccgaata tctcttccac ccgcgcccct tcaacagtat
     1321 ctccaacctt taatatctgg tcattaatca aggcgatgtt tccctcttca gacaggacaa
     1381 tcccgtttaa gactaactgg ggctggggtt cggcaacaaa ctgctccgcg gaagtaatcg
     1441 gctctttggg attagtttgc gccggggcag gagaaataga aagcaggggg aaaggagcag
     1501 gaggatgatc aaagacgatg gggcgatagt caggaggggt ataagacgcg gctatcggca
     1561 aggcttgctc ttttttcgcg cgggcggaaa aagagcggtt aatcaggatt tcaattaaga
     1621 acattcccag ggtcagaaaa acaaggagaa gaataaccgt ccggaccgcg gttgattttc
     1681 taagcgggct gttagcggcc gcggccttgc ctgccgcctg aaccggggca acagccgcgg
     1741 gatcagattt gccctgcacc ttttttaagg cctcataaat tatgctcatt ccgtttgggg
     1801 ggtcacccgg atatccttaa cgcactcgct gattatatcc cgcgcgatgc gggatttctc
     1861 cttgataaaa gacaataaaa gcgcccggtc gcacaacagg tttatcagcc tgggcacccc
     1921 ttgagaaaaa ctgtatatat ccctgaaggc atcggggtca aactcaatcc ttttgtcccg
     1981 cggattaagg caggccgtat ccagacggtg atatatgtaa tcatccagct cgtcctcttc
     2041 cagcggctca atgtgataat ccaccattac ccgctgtttt aactggcgca gttcaaacaa
     2101 ctccagcttt ttccttaatt ccggctggcc caccaggaca atctgaagca gtttttcctt
     2161 atcggtttcc aggttagaaa gcaggcgcac ctgttccagc tggcggcagg taaggttctg
     2221 ggcctcgtca ataatgatta ccgcgttgtt gcctaaagat gcctgactaa gcagaaaatc
     2281 attcagggcg ttgattaacc ccaggcggga gcgtttctta agcgatatcc cgaagtcctg
     2341 gacaatcaac tctaaaagct ggacctcgga gaaataaggg tttatcacta gcgccgtctt
     2401 aatggattta tccagctggc taagcagagt ccggcacata gtggtcttgc ctatgcctat
     2461 ctcgccggta acggtaatca ggcctttacg ctcatttatg ccgtaggaca tgcaggcgat
     2521 tgcttcttta tgcctgcggc ttaagaagaa aaaggagggg tcgctggtca cattaaaagg
     2581 cttttcctta aggccgtaat attgcaaata catagctttt attataacag caaaaaaata
     2641 tttgtaaagg gattgacaaa cctccgaaaa tatggtatct tttatataaa tgaaagggat
     2701 gtgcaaagcc acggctcccg taaaaaccaa agaaaagcat tctgcccggt caggcaaatg
     2761 cttaaagagg aggaccctgg caatgtatgt taccccctgg caagaaagaa gaaaagactt
     2821 ccggctcaaa gattacctgc cgttacatta tgaattaaag gcgcctaacc gctacggcaa
     2881 cgccattacc caagacatat cggaaagcgg cacaaggctt cttctggaca attttatccc
     2941 ccgtttctct aaagtcgccc tccagataaa ccttcatcct gacaaacagt tccaggtcaa
     3001 cggcgaagtc aaatgggccg agaggatgca acattcctac cgctatcaga ccggggtaga
     3061 gtttaagaac ctaaacctgg aaaacaaaag aaacctggag aaattcatag ctgaaaacag
     3121 attttaaacg caaaaaaaag gataatatgg ctgaagaaaa aaaggataag aaagaacggt
     3181 tcggcaactg cggaggctgc aacaaaccga taaagaaggt ccgacgctat taccgcaaca
     3241 acaaatattt ctgcacggct aaatgctata aaacctatct tgagaaatcc ccggccaaac
     3301 aatctgctcc ggcttaaatc tattattgtt ctttaacatt taatggatac ctgctatact
     3361 gttgggatga gaccatatgg tacacaccaa cagttggagt cgcgtcggtg ccgggccttg
     3421 gctttattgc gcaagggaga agcttaccgc gacgtggcag
//
LOCUS       DATDUB010000207         3813 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1502187, whole genome shotgun sequence.
ACCESSION   DATDUB010000207 DATDUB010000000
VERSION     DATDUB010000207.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3813)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3813)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3813
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1502187"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..205)
                     /locus_tag="VJA84_04130"
     CDS             complement(<1..205)
                     /locus_tag="VJA84_04130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006907238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41348.1"
                     /translation="MTTKPIASKPAEFDSITIKIASPQVIRSWSKGEVKKAETINYRT
                     LKPEKGGLFCEKIFGPVKDWECNC"
     gene            complement(202..3618)
                     /gene="rpoB"
                     /locus_tag="VJA84_04135"
     CDS             complement(202..3618)
                     /gene="rpoB"
                     /locus_tag="VJA84_04135"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013181685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000345 - cytosolic DNA-directed RNA
                     polymerase complex [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HLD41349.1"
                     /translation="MKDRKNFAKIKEIYHMPDLLDLQRLSYLEFLQADTESDKRGNIG
                     LQEVFNEIFPIDSFDHQVRLDFLSYSLGKPKYDTDDCRRRSMSYAAPLKVRFRLVTPN
                     ETKEQEAYFGEIPLMTDTGTFIINGDERVVVCQLQRSPGVSFEEEIHPTTGKKIFHGR
                     IIPYHGAWLEFKYDISEVILAYVDHKRSFPATQILRIMGYASDEDILNAFGPKPYEQV
                     LNTLKKDYTKNKEEALADLYRKMRPTEPMTPDAAENLFYRLFFDPRRYDLSRAGRFIL
                     NRKLGLNVSLDKRVLDAETVIKVMEYLLKLKEGAGAIDDIDHLGNRRVKTVGELVQNQ
                     VRIGLTRMERSIRERLAVMSEFNTLSLHHLINSKLLSNQIKDFFGRSQLSQFMDQVNP
                     LAEMTHKRRLSALGPGGLSRERAGFEVRDIHPSHYGRICPIETPEGPNIGLIASLSTY
                     AQVNDLGLLETPYRKVEDGKVSRKIEYLTADIEENKLIAQANAALAEDGRFEGKEVSC
                     RHKGDFPKVDPKKVEYMDVSPKQLVSVAAALIPFLEHDDANRALMGSNMQRQAVPLMI
                     TEAPIVSTDMEQKMAVDSGAVIIAKEAGKVNYVDGASIVIDKTTYKLKKFIRSNADTC
                     INQRPIVKLGAKVEKGEVVADGMSTQGGELALGRNLLAAFMPWRGYNFEDAILISERI
                     SKEDIFTSIHVEEFQIEATETRLGNEELTRDIPNISEESLKDLDKDGVIRVGAEVHPG
                     DILVGRVTPKTESELSAEERLLRAIFGEKAGDVRDTSLVASPGVEGVVVDVHVFARKD
                     RGRKSKDEKKQEASKIREIKAYYKQEITFVEEEKVIRLSKLLGVAREKLDKADYGSNE
                     EVRVLADSFEERIKELLAEQEQEIEKVRRGDELPAGVLKRAVVYVAIKRKLAVGDKLA
                     GRHGNKGVVARIMAEEDMPFLADGTPVDVVLNPLGVPSRMNVGQILETHLGWAAKVLG
                     IKAASPVFDGAAESEIKEMLKKAGLPEDGKVQLYDGYNGEPFFQKATVGYIYIMKLNH
                     MVDEKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAFTLQEMLTVKS
                     DDVKGRTRIYENIVKGEQKLDSSTPESFNVLIKELQGLALDIKTQNTQNK"
     gene            complement(3706..>3813)
                     /locus_tag="VJA84_04140"
     CDS             complement(3706..>3813)
                     /locus_tag="VJA84_04140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011541993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein L7/L12"
                     /protein_id="HLD41350.1"
                     /translation="LVDAAPKAVKEGVAKAEAEEMKKKLEAAGATVELK"
BASE COUNT          869 a         1077 c          861 g         1006 t
ORIGIN      
        1 cgcagttgca ctcccagtcc tttaccgggc caaaaatctt ttcgcagaaa agaccgccct
       61 tttccggctt taaggtgcgg taatttatgg tttccgcctt cttgacctct ccttttgacc
      121 aggaacggat tacctgggga gaggctatct ttatagtgat agaatcaaat tcagcgggtt
      181 tggaggcaat tggtttagtg gtcatttatt ttgagtgttt tgagttttta tgtccagggc
      241 caggccttgc aactccttga tcaggacatt aaaggattcg ggagtgctgg aatccagctt
      301 ctgttccccc ttaacgatat tttcatagat gcgggtcctg ccctttacat cgtcggattt
      361 cacggtgagc atttcctgca gggtaaaggc cgcgccatag gcctccaggg cccagacttc
      421 catctccccg aatctctgac cgccgaactg ggcctttccg cccaagggct gctgggtaac
      481 taaggaataa ggccctatgg aacgggcatg gattttttca tccaccatat ggttaagctt
      541 cattatatag atatatccca cggtcgcctt ctgaaaaaaa ggctctccat tgtaaccatc
      601 atacagctgg accttaccgt cttccggaag gccggctttc ttaagcattt ccttgatctc
      661 gctttccgcg gcgccgtcaa atacggggct ggcggcctta atccccagga ccttggccgc
      721 ccatcccaaa tgggtctcta aaatctggcc cacattcatc cgggaaggca cgcccaaggg
      781 attcaaaacc acatccaccg gagtgccgtc agccaggaaa ggcatatctt cttccgccat
      841 aatcctggcg accacgcctt tgtttccgtg gcggccggca agcttatccc ctacagccag
      901 tttcctctta atagccacat aaaccaccgc ccgttttaaa accccggcgg gcaattcatc
      961 tcccctgcgc accttttcaa tttcctgttc ctgttccgcc aaaagctcct taatccgctc
     1021 ttcaaaagaa tccgccaaaa ccctgacctc ttcgttagag ccgtaatcgg ccttatctaa
     1081 tttttcccgg gcaactccca aaagtttgct taaacgaata accttctcct cttccacaaa
     1141 ggttatttcc tgtttatagt aggccttgat ttcccggatc ttggaggcct cctgcttctt
     1201 ctcgtctttg gatttccggc cgcggtcctt gcgggcaaag acatgcacat ccactaccac
     1261 gccctctacg ccgggagaag ccaccagcga agtatcccgg acatccccgg ccttttcccc
     1321 gaatatcgcc ctaagcaggc gctcttcagc ggaaagctcg gattcagtct tgggagtaac
     1381 ccttcccacc aatatatcgc ccggatgcac ctcggcccca acgcggataa ccccgtcctt
     1441 atccaggtcc ttcaggcttt cttcagagat attaggtata tcgcgggtga gttcctcatt
     1501 gcctaagcgg gtctcggtgg cctctatctg aaattcctcc acatggatgg aagtaaatat
     1561 gtcttctttg gaaatcctct cggatatcag gatagcgtct tcaaaattat atcccctcca
     1621 gggcataaag gccgccagga gatttctccc cagggccagc tctccgcctt gagtgctcat
     1681 cccgtcggcg acaacctcgc ctttttccac cttagcccct aatttaacta tcggcctctg
     1741 attaatgcag gtatcggcgt tagaacggat gaatttcttt aacttataag tggttttgtc
     1801 tatcactatg gaggcgccgt caacataatt aaccttgccg gcctctttag cgattattac
     1861 cgctccggaa tcaaccgcca tcttttgctc catatccgtg gagactatcg gggcttcggt
     1921 aatcatcagg gggacggcct ggcgctgcat atttgagccc atcagcgcgc gattggcgtc
     1981 atcatgctcc aaaaagggaa tcaaggccgc ggccacagaa accaactgct tgggagagac
     2041 atccatatac tctaccttct tagggtcaac cttgggaaaa tcgcctttgt ggcggcagga
     2101 aacctctttg ccttcaaaac ggccgtcttc agccaaggcc gcgttggcct gggcaatcag
     2161 cttattctcc tcaatatccg cggtaagata ttctatctta cggctgacct tgccatcctc
     2221 aaccttacgg tagggggttt ccaaaagccc taaatcattt acctgggcat aagtgcttaa
     2281 agaggcaatc aatccgatat tcgggccttc cggggtttca atagggcaga tcctgccgta
     2341 atgcgacggg tggatatccc tgacctcaaa acccgcccgc tctcgggaca aacctccagg
     2401 acctaaagcg gaaagcctgc gtttgtgggt catctccgcc aggggattga cctggtccat
     2461 aaactgggat aactgcgaac gcccaaagaa atccttaatc tgattggaaa gcagtttgga
     2521 attaataagg tgatggaggc ttaaggtgtt aaactccgac atcactgcca ggcgctcccg
     2581 gatagagcgt tccatccggg tcaggcctat gcgcacctgg ttctggacca gctcgcctac
     2641 agtcttaacc ctgcggtttc ctaaatggtc aatatcatca atagcgccgg cgccttcttt
     2701 taactttaag agatattcca taactttgat tacggtctcg gcatccaata ccctcttatc
     2761 taaagaaaca ttcagcccta acttccggtt taatataaac cttccggccc gggacagatc
     2821 atacctgcgg ggatcaaaga aaagccggta aaaaagattt tccgcggcat ccggggtcat
     2881 cggctcggtg gggcgcatct tacggtataa gtccgccagg gcctcttcct tattcttggt
     2941 ataatccttc ttcagggtat taagcacctg ttcatagggt ttggggccaa aggcgttcag
     3001 gatatcttca tcgctggcat agcccataat ccgcagtatc tgggtagccg ggaaactgcg
     3061 tttatggtca acataggcca ggataacctc tgaaatatcg tatttaaatt ccagccaggc
     3121 cccgtgatag ggaataatcc ggccatggaa tatctttttg ccggtagtag gatggatctc
     3181 ctcttcaaaa gaaactccgg gtgaacgctg taactgacag accactaccc gctcgtcgcc
     3241 attgataatg aatgtcccgg tatcagtcat cagcggtatc tcgccgaaat aggcctcctg
     3301 ctctttggtc tcattggggg taaccagcct gaacctgact tttagaggag cggcatagct
     3361 cattgaacgg cggcggcagt catccgtgtc gtatttaggc ttgcctaagg aatagctcaa
     3421 gaaatccagc ctcacctgat ggtcaaagct gtcaatcggg aagatttcgt taaagacctc
     3481 ctggagcccg atattgccgc gtttatcgct ttccgtatcc gcctgcagga actccaggta
     3541 agacagacgc tgaaggtcca acagatcagg catatgataa atttctttta tcttggcgaa
     3601 attttttcgg tctttcatta ttcgtcgctt acgctcctca taacgctgaa ccactctgaa
     3661 ccatacgcgg aactacgcaa tataagattc cgcgttgttc tgcgatcatt tcaactctac
     3721 tgttgccccg gcggcctcta acttcttctt catctcttcg gcctccgcct tagccacgcc
     3781 ttccttgacc gctttagggg cggcgtccac cag
//
LOCUS       DATDUB010000208         2922 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1827801, whole genome shotgun sequence.
ACCESSION   DATDUB010000208 DATDUB010000000
VERSION     DATDUB010000208.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2922)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2922)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2922
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1827801"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..880
                     /gene="murB"
                     /locus_tag="VJA84_04145"
     CDS             <1..880
                     /gene="murB"
                     /locus_tag="VJA84_04145"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: protein motif:HMM:NF010480.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008762 - UDP-N-acetylmuramate
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HLD41351.1"
                     /translation="WLKGLNARALFDEPLSKHTTLKVGPRADFWVEPQDRAGLRALLK
                     KARLLGKDYLVIGLGSNLLIKKKKLDLAVHLKGGEFSLCRAEGEYITAGAGVRMPQLL
                     NTARDFGLGGLEFLNGIPATVGGAIRLNAGVGWPERIEIGAFVERLEVMDKTGRIKTL
                     EKKDLDFGYRYSNLKQYIILKAVFGLFKKRKKNIRLKMRKFRDYRVKTQELGDPSAGC
                     IFKNHNGTSSGRLIDLCGLKGRRIGDAAVSRRHANFILNMGKASSSDVLALMNIIQKE
                     VKDKFNLELEPEIQLI"
     gene            880..1857
                     /locus_tag="VJA84_04150"
     CDS             880..1857
                     /locus_tag="VJA84_04150"
                     /EC_number="6.3.2.4"
                     /inference="COORDINATES: protein motif:HMM:NF002378.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008716 - D-alanine-D-alanine ligase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HLD41352.1"
                     /translation="MIDKIRIGVLMGGPSSERKVSLKSGKAVCEALKSLGLEAVAIDI
                     QREDRNYVLALLLSYDIGLAFLALHGAFGEDGRIQAILEEMGLAYTGSGTRSSALAMD
                     KLASRRIFEKEALNVPRCVVLERGRRGIGNFSDYPAVVKPVSGGSSIGLSIVDNPADL
                     KLAVELAFKYDRKIMIEEYIPGREFTVGILDNLPLEAIEIKPKSRFFDYKAKYEDDQT
                     EYIVPARVPLKTMQALKSAALRAHNGLGCFFFSRADIILSNDSRPFVLEVNTIPGFTS
                     TSLLPKAALCKGITFPELVLKITHSAWLNRQGNNKTLWPEEKPELINSR"
     gene            1818..2642
                     /locus_tag="VJA84_04155"
     CDS             1818..2642
                     /locus_tag="VJA84_04155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41353.1"
                     /translation="MARRKTRANKFPLKALIIPAIILGIILALAGLARIFFIRCPYFG
                     LKEINIEGSSEEKYLNIRQGLLGKNIFLLRLEGLKREIETLFPDASCELIERRPPDGL
                     RIVLRKRQAIAQIKKAGRFYLVDRSAMIMDSVPEAAFLTLPVISGLEDKIKEPKPGYS
                     YNIKELNNALELIRRKNESPLLGSYKLVRIDFSKGGLASLFILEGAIDTGIARKKDAP
                     RPLVEIKFDPEKPIETIKMLALLLSKRGLSIENLEYIDLKNLNSPVLLEKKEKIKT"
     gene            2642..>2922
                     /locus_tag="VJA84_04160"
     CDS             2642..>2922
                     /locus_tag="VJA84_04160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41354.1"
                     /translation="MPKYITHYGLEVASDIITVVRAISDKSGKITELSSKSCPSSGIS
                     DGAIKELGLLSESISRLLGGLSASCGQRIKSLIVSMPSLRLKVKHSSGLL"
BASE COUNT          758 a          620 c          809 g          735 t
ORIGIN      
        1 ttggctgaag ggattaaatg ccagggcgct ctttgatgag cctttgtcta agcatactac
       61 tctaaaggta ggcccgcggg cggatttttg ggttgagcct caagacaggg ctggtttaag
      121 ggctttgctt aaaaaggccc gcctattggg caaggattat ctggttatcg gactgggctc
      181 caatcttctg attaaaaaaa agaagctgga tttagccgtg catcttaaag gcggggaatt
      241 ttccctctgc cgggcggaag gagaatatat taccgccgga gccggtgtcc gaatgcccca
      301 gttgcttaat accgcgcgtg actttggatt gggagggttg gaatttttaa acggcatacc
      361 ggcaaccgtg ggcggggcca tccggcttaa tgccggggta ggctggccgg agaggattga
      421 aatcggggca tttgtggaaa gattagaggt gatggataaa acggggagga taaagaccct
      481 ggagaaaaaa gacctggatt ttggctatcg ctattctaac cttaagcagt atattatcct
      541 taaggcggta ttcgggctgt ttaaaaaaag gaagaagaat atccggctca agatgcgaaa
      601 gttccgggat taccgggtga agacccagga attgggggac ccttcagccg gctgtatatt
      661 taagaatcat aacgggacct ccagcggcag attgattgac ctctgcggct taaagggccg
      721 gcggataggg gacgcggcag taagcaggag acacgctaac tttatcttga atatgggcaa
      781 ggccagttct tcggatgtcc tggccctgat gaatattatt cagaaggaag tgaaagataa
      841 atttaacctg gagcttgaac cggagataca gttgatatga tgattgataa aattaggatc
      901 ggggtgttga tgggcgggcc ttcatccgag cgcaaggttt cgcttaaatc cgggaaggcc
      961 gtgtgcgagg ctttaaagtc tctgggcctt gaggcggtgg caattgatat ccagagggag
     1021 gataggaatt atgttttggc cctcctgctt tcttacgata tcggattggc ctttctggca
     1081 ctgcacggcg cttttggcga ggatggcaga atccaggcta tcctggaaga aatgggattg
     1141 gcttataccg gaagcggaac gcgctccagc gccctggcaa tggataagct ggcctcccgc
     1201 cggatatttg agaaagaagc tctgaatgtc ccgcgctgtg ttgtcctgga aagaggccgg
     1261 cgcgggatag gcaatttttc ggattatccg gcggtagtca agccggtatc cggcggctca
     1321 agcatagggc tctctattgt ggataatccc gcggacctga agctggcggt agagctggct
     1381 tttaaatatg accgtaagat tatgattgag gaatatatcc cggggaggga atttaccgtc
     1441 ggcattctgg ataacctgcc tttagaggcc attgagatta agcctaaaag ccgcttcttt
     1501 gactataagg ctaaatatga agatgatcag accgagtaca ttgtcccggc aagggtcccg
     1561 ctaaagacta tgcaggcgct taagtccgcg gccttgcggg cacataacgg gctgggctgt
     1621 tttttcttct cgcgggcgga tattatatta agtaacgact caaggccttt tgtcctggag
     1681 gtaaatacca tacccggatt tacttccacc agcctccttc ccaaagccgc cctttgcaaa
     1741 gggataacct ttccggaatt ggtgttaaag ataacccact ctgcctggtt aaaccggcag
     1801 gggaataata agacgctatg gccagaagaa aaacccgagc taataaattc ccgctgaaag
     1861 ccttaattat ccccgcgata attttaggga ttatcctggc cttggccggt cttgcgcgga
     1921 ttttctttat ccgctgtccg tattttggcc tgaaggagat taatattgaa ggttcgtcag
     1981 aggagaaata cctcaacatc cggcaggggc ttttagggaa aaatatattt ctcctgcgcc
     2041 tggaggggct aaaaagagaa attgaaacct tattccccga tgcctcttgc gagcttatag
     2101 agcgcaggcc gcctgatggc ttgaggatag tcttaagaaa acgccaggcc attgcccaga
     2161 taaaaaaggc cggccgcttt tatctggttg accgctcggc aatgattatg gatagcgtcc
     2221 cggaggcggc atttctcacc ctgccggtaa tatcgggatt agaggataag attaaagagc
     2281 ctaagcccgg atacagttat aatattaaag aattaaataa tgccctggag ttgatccggc
     2341 gcaagaatga aagtcctttg cttgggtctt ataaactggt caggatagat ttctctaaag
     2401 ggggactggc ttcattattt attctggagg gcgctattga taccgggatt gccaggaaga
     2461 aggacgcccc caggccgctg gtagagataa aatttgatcc ggagaaaccg attgagacga
     2521 ttaagatgct ggctttgctc ctctcaaaac gagggctttc aatagagaat ctggaatata
     2581 ttgatttaaa gaacttaaat tctcctgtcc tgctggaaaa gaaagaaaag attaagacct
     2641 gatgcctaaa tatataaccc actacggatt ggaggttgcc tcggacataa tcactgttgt
     2701 ccgggcaata agcgataagt ccggaaagat aaccgagctg tcctctaaat cctgtccttc
     2761 ttcaggaata agtgatgggg caatcaagga gttaggcctg ctttccgaga gtatctcaag
     2821 gcttttagga ggcctgtccg cctcttgcgg gcagcggatc aaatctttga tcgtatctat
     2881 gcccagcctc cggctcaagg ttaaacactc ttcgggattg ct
//
LOCUS       DATDUB010000209         3189 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_816531, whole genome shotgun sequence.
ACCESSION   DATDUB010000209 DATDUB010000000
VERSION     DATDUB010000209.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 3189)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3189)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3189
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_816531"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..452
                     /locus_tag="VJA84_04165"
     CDS             <1..452
                     /locus_tag="VJA84_04165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013277209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003852 - 2-isopropylmalate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="alpha-isopropylmalate synthase regulatory
                     domain-containing protein"
                     /protein_id="HLD41355.1"
                     /translation="FEAADASFEILIKRALKQYKRFFDLEGFRVVIEKKADGRVSSEA
                     IIKVKVKGIEEHTAADGDGPVNALDNALRKALKSFYPSLSRMHLSDFKVRVLDEKAGT
                     AARVRVLIQSQDENESWGTVGVSGNIIEASWQALVDSVEYKLLKDKN"
     gene            452..>3189
                     /locus_tag="VJA84_04170"
     CDS             452..>3189
                     /locus_tag="VJA84_04170"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: protein motif:HMM:NF004349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0004832 - valine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006438 - valyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HLD41356.1"
                     /translation="MELESRYNSKEVEDRIYAFWQEQGLFVAKVNLDKKPFCIVIPPP
                     NVTGILHMGHALNNAYQDILVRLKRMRGFESLWMPGTDHAGIATQNVVERQLAKEGLK
                     RQDLGREKFLERAWQWKEEYGVTIIRQLKKLGSSCDWERARFTMDEEYSKSVKEVFVK
                     LWDKGLIYKGDRIINWCPRCQTALSDEEAVHHEVEGNLYYIKYPLKGSMALAMGSQAM
                     ALRPIVNSLQSKTEKTKTIDHRPSTIDYVVVATTRPETMLGDTAVAVNPKDRRHKSLI
                     GQTVVLPLVEREIKIIADDFVDSKFGTGAVKVTPAHDPNDYEMGKRHNLEFINIMRPD
                     AVLNANAGEYSGRDRFEAREAIIEDLKQRKLLEKIVPHTHSVGHCYRCNTVVEPYLSR
                     QWFVKMKPLAGPAIEAVKDGRIKFYPKRWTKVYLNWMENIRDWCVSRQIWWGHRLPVY
                     YCKKCQETGSLNSKVHATKIGGSAYGGKSQNSKSAFNGITVSKDKLDKCPVCGSGDIY
                     QDEDVLDTWFSSWLWPFATFQPEAELNYFYPTSVLVTAPEIIFFWVARMIMAGFEFRG
                     SEPFKDVYIHGTVRDAQGKKMSKSLGNIIDPLEIIDKYGADALRFSLISITASGQDVY
                     LSEPKFELGRNFANKLWNASRFSLINLDLTRVNTDLCAFFKKENLELPECWILSRFYS
                     MLGALNKALEKYRFNQAANILYEFIWHEFCDWYLELAKPILVNREPFDSDQGRQSAEN
                     RNTQIVLYKVLEKTLRCLHPFMPFITEEIWQKLQSTGAPERQSASIMTQPWPHMQKQM
                     IDKKAERRMQLAIEIIAAIRNLRSQMNVAPAQKVNVSLISIDKKTGKALEEVSGYIVN
                     LARLENLNLQAASLKQKKGISAIVRDVRIHLELEGLIDIDKEAERINKEISGLSAS"
BASE COUNT          840 a          682 c          901 g          766 t
ORIGIN      
        1 agtttgaggc cgcggatgcc tcttttgaaa tcctgattaa acgcgccctc aagcagtata
       61 aaagattctt tgatttggag ggtttcaggg tggtcattga aaagaaggcc gacggccggg
      121 tcagttccga ggccatcatt aaggttaagg tcaaggggat agaggagcat actgccgccg
      181 atggcgacgg cccggtgaac gctttggata atgccctgcg taaagccttg aagtcgtttt
      241 atcccagctt gagccggatg catttgtcgg atttcaaggt gcgggtcctg gatgaaaagg
      301 ccggcaccgc cgcccgggtg cgggttttga tccagtccca ggatgagaac gaatcctggg
      361 gcaccgtggg ggtctccgga aacatcattg aggcctcctg gcaagctctt gtggatagtg
      421 tggaatataa attattgaaa gataagaatt aatggaatta gagagccgtt ataattctaa
      481 agaagtggaa gaccggatat acgccttttg gcaggaacag ggtttgtttg tcgccaaggt
      541 aaacctggac aaaaagcctt tttgcatagt tatcccgccg ccgaatgtta ccggtatcct
      601 gcatatgggc catgccttga ataatgccta tcaggatatt ttagtccggc tcaagcggat
      661 gcggggcttt gaatctttgt ggatgccggg gactgatcat gccggcatcg ccacccagaa
      721 tgtggtggag cgccagcttg ccaaggaagg gcttaagcgc caggatttgg gccgggagaa
      781 gttcctggag cgcgcctggc agtggaagga agaatacggt gtaaccataa tcaggcagtt
      841 gaagaaatta ggctcttcct gcgactggga gcgcgcccgt tttacgatgg atgaggagta
      901 ttcaaaatcg gtaaaagagg tttttgttaa gctctgggat aaggggctga tttataaggg
      961 ggacaggatt attaattggt gcccgcgctg tcagaccgcg ctttccgatg aagaggcggt
     1021 gcatcatgag gtggagggga atttatacta tataaagtat ccgcttaaag ggtctatggc
     1081 tttggctatg ggaagccaag ccatggcctt gcggcctata gtcaatagtc tacagtctaa
     1141 aacagaaaaa acaaagacca ttgaccatcg accatcgacc atcgactatg tggtggttgc
     1201 cactacccgg ccggagacca tgctggggga tacggcggtg gcggtaaatc ccaaagaccg
     1261 caggcataag agccttatcg gccaaacggt tgtcctgcct cttgtggaaa gggagataaa
     1321 aattatcgcc gatgattttg tggattccaa gttcggcacc ggggcggtaa aggtcacccc
     1381 ggcccatgac cccaatgatt atgagatggg caagcgccat aacctggagt ttatcaacat
     1441 aatgcgtccg gacgcggtcc ttaacgccaa tgccggggaa tattccggcc gggacaggtt
     1501 tgaggcccgg gaggcgataa ttgaggattt gaagcaaagg aaactgctgg agaagatagt
     1561 cccgcacaca cattcagtcg gccattgtta ccgctgcaat accgtggttg agccgtatct
     1621 gtcccggcag tggtttgtga agatgaagcc gctggcaggg ccggcgattg aggcggtcaa
     1681 ggacggccgg atcaagtttt atcccaaacg ctggaccaag gtctacctga actggatgga
     1741 gaatatccgg gattggtgcg tctcccggca gatttggtgg ggacatcggc ttcctgttta
     1801 ttattgcaag aaatgtcagg aaacaggaag cctaaattca aaagtccacg ccacaaagat
     1861 tggcgggtct gcctacggcg gaaaaagtca aaactcaaaa tccgcgttta atgggataac
     1921 agtatcaaaa gataaattag ataaatgccc tgtgtgcggg tcgggggata tttatcagga
     1981 tgaggatgtc ctggatacct ggttttcctc ctggctctgg ccgtttgcca cttttcagcc
     2041 ggaagcggaa ttgaattact tctatcctac atcagttttg gtgactgctc cggagataat
     2101 ctttttctgg gtggcgcgga tgattatggc cggttttgag tttaggggaa gtgagccgtt
     2161 taaggatgtc tatatccacg gcacggtgcg ggacgcccag ggcaagaaga tgtctaaatc
     2221 cttaggcaat atcattgacc ccctggaaat cattgacaaa tacggcgcgg acgccctgcg
     2281 cttcagcctg atttccataa ccgcaagcgg ccaggatgtg tatttgtccg agccgaagtt
     2341 tgaattaggc cgcaactttg ccaataaact ctggaacgcc tcccgctttt ctttaatcaa
     2401 cctggattta acgcgagtaa atacagattt atgcgcgttc tttaagaagg agaatctgga
     2461 gcttcccgaa tgttggatct taagccggtt ttattctatg cttggggcgt taaataaggc
     2521 gctggagaaa taccgcttta accaggcggc gaatatactc tatgaattta tctggcatga
     2581 gttttgcgac tggtatttgg aattagccaa gccaatttta gtaaacagag aaccctttga
     2641 ctccgatcag ggcaggcaga gcgcggagaa caggaacacc cagatagttt tatataaagt
     2701 gttagaaaaa accttaagat gcttacatcc ttttatgccc tttatcactg aagagatctg
     2761 gcagaagctg cagagcacag gagcgccaga gcgccagagc gccagtataa tgacccagcc
     2821 ctggccgcat atgcagaagc agatgattga caaaaaggcc gaaaggcgga tgcagttggc
     2881 gattgagatt attgccgcta tccggaatct gcgctcccag atgaatgtag ctccggcgca
     2941 aaaggtcaat gtcagcttga tctctattga taagaaaaca gggaaggctt tagaagaggt
     3001 ttccggctat attgtgaact tagccaggtt ggagaatctt aatctccagg ccgcgtccct
     3061 taaacagaaa aaaggcatca gcgcgatagt cagggatgtt aggatacacc tggagttgga
     3121 aggcctgata gatattgaca aggaagcaga aaggataaat aaggagataa gcggtttatc
     3181 cgcttcttt
//
LOCUS       DATDUB010000210         2382 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_154061, whole genome shotgun sequence.
ACCESSION   DATDUB010000210 DATDUB010000000
VERSION     DATDUB010000210.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2382)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2382)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2382
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_154061"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            141..506
                     /gene="rplS"
                     /locus_tag="VJA84_04175"
     CDS             141..506
                     /gene="rplS"
                     /locus_tag="VJA84_04175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013275872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HLD41357.1"
                     /translation="MDKIKLIEGDYAVKDLPKFNVGDTIKIMTKIPEGDKVRLHPFEG
                     TVIAKNGSGVRSTFTVRKVSYGEGIERVFPLNSPAIENIKLVHSGKVNRAKLYYLRGK
                     IGREAKIDSAEGERGVRPL"
     gene            512..1093
                     /locus_tag="VJA84_04180"
     CDS             512..1093
                     /locus_tag="VJA84_04180"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015423029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HLD41358.1"
                     /translation="MLAYEQKLWKQGYKHIAGVDEAGRGPLAGPVVSAAVILKDCSFH
                     NRIDDSKLLSRPQREKAFAEIKEKALVSIGIVNEKIIDRINILEATRLSMKKALSFLR
                     PQPDFVIIDGNFPLDNIDMPSESIVGGDAKSLSIACASIVAKVTRDRIMVVYHNLWPE
                     YEFARHKGYGTKRHLEILRKSGPSPIQRLSFKY"
     gene            1243..1626
                     /locus_tag="VJA84_04185"
     CDS             1243..1626
                     /locus_tag="VJA84_04185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015949359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YraN family protein"
                     /protein_id="HLD41359.1"
                     /translation="MSRYNLNFGRASEDAAAVFLKNKGYKILRTNYRVKFGEIDIIAK
                     EASAICFIEVKSRVNCSFGHPKEALNPRKRDKISRAALAYLKENHFLDRSARFDVLSI
                     IKGADNQIDFELVKDAFELSGRYSY"
     gene            1663..>2382
                     /locus_tag="VJA84_04190"
     CDS             1663..>2382
                     /locus_tag="VJA84_04190"
                     /EC_number="6.3.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017873383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004329 - formate-tetrahydrofolate ligase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formate--tetrahydrofolate ligase"
                     /protein_id="HLD41360.1"
                     /translation="MTDLKIARKTKPYPIVKIAKSVGIREKELELYGNYKAKIDLAIL
                     KRIKVRRLGKYVLVTAITPTPLGEGKTVTTIGLAMALNRIGKKTIACIRQPSLGPVFG
                     IKGGASGGGYSQVIPKEDFNLHFNGDAHAVSLANNLLAAFLDNSFFKNNPLNIKPESI
                     TWRRVLDVSDRFLRNIKIGLGGKDDGIERDTGFDITAASEIMAILALSRDPADLRKRL
                     GRIVVAEDINGKPVTAEDLKAA"
BASE COUNT          664 a          501 c          627 g          590 t
ORIGIN      
        1 aactaagaaa aaaaggccgg atttattcag ggaaaaaata aagggtcaat agtcaataga
       61 aaaggaaaac catagactat cgactataga ctgtcgaccc ttgattatta actctaacaa
      121 agagattatg gaggttagaa atggataaga ttaaattgat tgaaggtgat tatgccgtaa
      181 aagacctgcc gaaattcaat gtcggggaca ccataaagat tatgactaag atcccggaag
      241 gggataaggt caggctgcat ccttttgaag ggaccgtgat tgccaagaac ggttcaggtg
      301 tccgttctac cttcacggtg cgcaaggttt cctacgggga agggatagag agggtttttc
      361 ctcttaattc tccggcaatt gaaaatatta agctggtcca ttccgggaaa gtgaatcggg
      421 ctaagcttta ttatttaaga ggcaagatcg gccgggaggc caagattgat tccgcggagg
      481 gagaaagagg ggtcagaccc ctataattct ggtgcttgct tacgaacaaa agctctggaa
      541 gcaaggttat aaacacatcg ccggcgtgga tgaggccggg cgcggccctt tagccgggcc
      601 ggtggtttcc gcggcagtca tactgaagga ttgcagtttt cacaaccgca ttgacgactc
      661 taaattactt agccgcccgc agagagaaaa ggcctttgcc gagattaagg aaaaggcctt
      721 ggtcagtatc gggatagtca atgaaaagat tattgaccgg ataaatatcc tggaggccac
      781 gcgcctaagc atgaagaagg cgctttcatt tttgcgcccc cagccggatt ttgtgattat
      841 agatggaaat ttccctcttg ataatatcga tatgccgtcc gagagtatcg taggcggtga
      901 tgccaaaagt ttgtctatcg cctgcgcctc tatagtggcc aaggttaccc gggacaggat
      961 tatggttgtt tatcataatc tctggccgga atacgagttc gcccggcaca aaggctatgg
     1021 cactaaaagg catttggaaa ttttgagaaa gagcgggccc tcgccaatcc agcgtttgag
     1081 ctttaaatat tgacaatttg agcttgttga aaaagcctct tgccgtcatt gcgagcccgc
     1141 cattgattca gtggcgggcg aagcaatctc cgacggggat tgcttcgtcg ctacgctcct
     1201 cgcaatgaca agattgaggt tttgcaacgg tttcaactta gtatgtccag atataatctg
     1261 aattttggaa gggcttctga agacgcggcg gcggttttct taaagaataa aggctataag
     1321 atacttagga cgaattaccg ggttaaattc ggggagatag atattattgc caaggaggcc
     1381 tcggcaatat gctttataga agttaagtcc cgcgttaatt gttccttcgg ccatcctaaa
     1441 gaggccctga atccgcgcaa gcgggataaa atttcccgcg ctgccctggc ctatctgaaa
     1501 gaaaaccatt tccttgaccg gagcgcccgt tttgacgttt tatccatcat taaaggcgca
     1561 gataatcaga ttgattttga gctggtaaag gatgcctttg agttgagtgg aaggtatagt
     1621 tattagcaga gtgagaggat agaagagtaa aaggaggaaa gcgtgacgga tttaaagata
     1681 gcccgcaaga ctaagccgta tccaatagtc aagattgcca agtctgtcgg gataagagag
     1741 aaagagcttg agctttacgg gaattacaag gccaagatag acctggccat attaaaaagg
     1801 attaaggtcc ggcgtttagg aaagtatgtc ttagttaccg ctatcacccc cacgcctttg
     1861 ggcgagggca agaccgtaac cactatcgga ctggctatgg ccttaaaccg tattggcaaa
     1921 aagactatcg cctgcatccg tcagccttct ctggggccgg tgttcgggat aaaaggcggg
     1981 gcaagcggag gcggttattc ccaggttatc cctaaggaag attttaacct tcattttaac
     2041 ggcgatgccc acgcggtaag cttggccaat aatctcttag ccgctttctt agataattct
     2101 ttttttaaaa ataatcccct gaatataaaa ccagagagca ttacctggcg cagggtgctg
     2161 gatgtttccg accgcttcct gcgtaatatc aagatcggtt taggcggcaa agacgatggg
     2221 attgaacgcg ataccggctt tgacattact gccgcctccg agattatggc tatcctggcc
     2281 ttgagccgcg accccgcgga cctgcgcaag agattaggcc gaatcgtggt ggctgaagac
     2341 attaacggta agcctgtaac cgctgaagat ttaaaggccg cc
//
LOCUS       DATDUB010000211         2807 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1166444, whole genome shotgun sequence.
ACCESSION   DATDUB010000211 DATDUB010000000
VERSION     DATDUB010000211.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2807)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2807)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2807
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1166444"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(104..718)
                     /locus_tag="VJA84_04195"
     CDS             complement(104..718)
                     /locus_tag="VJA84_04195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012513644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016209 - antioxidant activity [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="redoxin domain-containing protein"
                     /protein_id="HLD41361.1"
                     /translation="MEEIKVLSIGQKVPDFEFEAYLPEKKDFGRIKVSDVSKKGNWLI
                     LFFYPADYTFVCPTELADVGGIYPELKKEGIELISMSTDTHFVHYAWASSEKLLVDIK
                     YPMGADPTHNISRAFGVYDVESGLSLRGTFIIDPDGKLLASEVNYFPVGRNADELLRK
                     IKAFKYVRENPSQVCPAKWGPGKKTLTPGKDLVGKVGEKLGSGI"
     gene            complement(734..1141)
                     /locus_tag="VJA84_04200"
     CDS             complement(734..1141)
                     /locus_tag="VJA84_04200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013822751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor"
                     /protein_id="HLD41362.1"
                     /translation="MKKNILRRNTRQRQVILEELRKVKSHPTADAVFKMVRKRFPGIS
                     YGTVYRNLNLLRDESKVLELSYGRYSCRYDGTVGNHYHFFCLGCKNVFDLEDLPLLKD
                     LEELAGANPDFRVVSHRLEFHGYCRKCNQGLKN"
     gene            complement(1222..2649)
                     /locus_tag="VJA84_04205"
     CDS             complement(1222..2649)
                     /locus_tag="VJA84_04205"
                     /inference="COORDINATES: protein motif:HMM:NF024878.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing phosphohydrolase"
                     /protein_id="HLD41363.1"
                     /translation="MADKRLIPTLIIDDDPFSVTVIRHLGQEMRDIQLKVHHTVSLED
                     SLSFLNTHPEIGLIILDYRVHSKITGLEILQHIRVKGINVPVIIVTGSGDEEVAVMMM
                     KAGASDYLVKGNINAEILERSIKDALDRYEKFDNALAKQNEVVLKYMAIKNALNGVCV
                     ADLNGSISYVNGAFLDMLGYAQEKDIQQKNIGELFFDPKKFEEIFNVLQAKKSWFGEI
                     SGLKRGSGEIYLQALFSLIEYKENKPAQIMGSFIDITKIRDAEKKRDALYKGIMEVFA
                     LRAEEVGNVETAGHIHRIAAYVRYIAQQLSQAEPFKNYIDDKYINDVSYASMLHDVGK
                     WRTPNEILLKPGELTPAEWEVIKQHPKLGVEMLRPLLKDKGTNQYLKLVESAVMYHHE
                     RWDGAGYPERLKGEEIPLSARIVALADNYDALVSERSYRRALSHEEAVEIIKKEQGKF
                     DPRILQLFLDHHLEFKIIKENCNNI"
     gene            complement(2698..>2807)
                     /locus_tag="VJA84_04210"
     CDS             complement(2698..>2807)
                     /locus_tag="VJA84_04210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015738904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="NifU family protein"
                     /protein_id="HLD41364.1"
                     /translation="KGACGGCTMSSMTMTQGVERAVKKAVPEVKSVVAV"
BASE COUNT          663 a          767 c          587 g          790 t
ORIGIN      
        1 gcacttcgtg cctcgcaatg acactttaaa aatcgaatct cgaaatagtg tttccgtcag
       61 agacaatgtc ataatttgga catgtctgat cctaaaacta aaattaaatc ccggagccta
      121 acttttcacc caccttgccc accaggtcct tgcccggggt cagggtcttt ttaccggggc
      181 cccacttggc cggacagacc tgggacgggt tctcccgcac atatttaaag gccttgatct
      241 tccttaagag ctcatcggca ttgcggccta ccgggaagta attcacctcg gaagccagga
      301 gcttgccgtc agggtcaatg ataaatgtcc ctcgtaaaga gaggccgctc tctacatcgt
      361 aaaccccaaa ggcccgggag atattgtggg tggggtccgc gcccatcggg tatttgatgt
      421 ccacgagcaa tttctcggaa ctggcccagg cataatgcac aaagtgggtg tccgtactca
      481 tagagataag ctctatgcct tccttcttta gctccgggta tatcccgccc acatccgcca
      541 gctctgtggg gcagacaaag gtataatccg ccgggtaaaa gaaaagtata agccaattcc
      601 cctttttgga aacatccgat accttgatcc tgccaaaatc ttttttctcc ggcagatagg
      661 cctcaaactc aaaatccggg accttttgcc ctatgctcaa aacctttatt tcttccattt
      721 cgcgtcctcc cttttagttt tttaaaccct ggttacattt gcggcagtag ccgtgaaact
      781 caagacggtg ggaaaccacc ctaaagtccg gattagcccc agccaactcc tccaaatcct
      841 tcaacaacgg taaatcctcc agatcaaaga cattcttaca gcctaagcag aaaaaatgat
      901 aatgattgcc caccgtgccg tcataacgac agctgtacct gccgtaggaa agctccagga
      961 ccttagactc atcccgtagc aggttcaggt tgcggtagac cgtgccatag cttattccgg
     1021 ggaatctttt tcggaccatc ttgaacacgg cgtctgccgt aggatggctt ttgaccttgc
     1081 gcaattcttc cagtattacc tggcgctggc gggtgtttct tcttaaaata ttttttttca
     1141 tctcacttat cagtaataat tcttattact gatattagtt taacaaaaat actatccttg
     1201 tcaagctttt tttaaaaaac cctaaatatt attgcagttc tcttttatta ttttaaattc
     1261 caggtggtgg tctaggaaaa gctgtaatat ccgcgggtca aacttgccct gctctttctt
     1321 gataatctcc accgcctctt catggctaag ggccctgcgg taggaacgct cggaaaccag
     1381 ggcgtcataa ttatccgcta aggccacgat cctggcggaa agggggatct cctcgccttt
     1441 aagcctttcc ggatagccgg cgccgtccca tctttcgtga tgatacataa ccgcgctttc
     1501 caccagctta agatattggt tagtgccctt gtcttttaaa agcggcctta acatctctac
     1561 tcctaatttg ggatgctgtt tgattacctc ccattccgcg ggggtaagct cccccggctt
     1621 aagcaggatt tcattgggcg tgcgccattt gccgacatca tgaagcatac tggcgtaact
     1681 tacgtcgtta atgtatttat cgtctatgta atttttaaac ggctcggcct ggcttaactg
     1741 ctgggcgata tagcgcacat aggcggcgat gcggtggata tgcccggcag tctccacatt
     1801 tcccacttcc tcggcccgaa gggcaaagac ctccattatc cctttataca gggcgtctct
     1861 tttcttttcc gcgtcccgga tcttggttat atcaatgaag gagcccatta tctgggcggg
     1921 tttattttcc ttgtattcta ttaaagaaaa cagcgcctgc agataaatct cgccgctgcc
     1981 cctctttaaa ccggaaatct cgccgaacca gcttttcttg gcctgcagga cgttaaatat
     2041 ttcctcaaac ttcttagggt caaagaataa ttcccctata ttcttctgct ggatgtcctt
     2101 ttcctgcgcg taacccagca tatccaggaa agcgccgttg acatagctga tactaccgtt
     2161 taaatccgcc acgcagaccc cgttcagggc gttcttaatc gccatatact tgaggacaac
     2221 ctcattctgc ttggccaagg cattatcaaa tttctcgtag cggtctaagg cgtcctttat
     2281 tgacctctcc aatatctcgg cgttgatatt gccctttacc agatagtcgc tggccccggc
     2341 cttcatcatc attaccgcca cttcctcatc cccgctgccg gtaacaataa tcaccggcac
     2401 atttatccct tttacccgga tgtgctgaag tatctccagg ccggtaattt tgctgtgcac
     2461 ccggtaatcc aggattatca ggcctatctc cgggtgggta ttcaagaaag ataaagaatc
     2521 ctccaggctg actgtatggt ggaccttcag ctggatatcc cgcatctctt ggcctaaatg
     2581 ccggattacg gttaccgaga aagggtcatc atctataatc agggtgggga taagcctttt
     2641 atctgccata acatactcct atgtaatatt tctatatgaa gtatactata tttcagttca
     2701 aaccgcaact acgcttttta cttccggcac ggccttcttg accgcccgct ccaccccctg
     2761 ggtcatagtc atgctggaca tcgtacaccc gccgcaggca cccttca
//
LOCUS       DATDUB010000212         2401 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_2503792, whole genome shotgun sequence.
ACCESSION   DATDUB010000212 DATDUB010000000
VERSION     DATDUB010000212.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2401)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2401)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2401
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2503792"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            10..831
                     /gene="panC"
                     /locus_tag="VJA84_04215"
     CDS             10..831
                     /gene="panC"
                     /locus_tag="VJA84_04215"
                     /EC_number="6.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004080408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004592 - pantoate-beta-alanine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HLD41365.1"
                     /translation="MRAFTDEAKKKGKTIGFVPTMGYLHPGHLSLIRQAKDDCDICVA
                     SIFVNPIQFGPKEDYRGYPRDMEMDRILSRSAGADCVFSPSAVQMYPPDYQTYVNVEK
                     ISSGLCGSSRPGHFQGVATVVNKLFNIVQPDIAYFGEKDYQQALVIKRMVSDLNMPLK
                     IKVMPIIREADGLAMSSRNRYLNHSEKQEAIILYQSLQRAREMISGKERNSQKIIKEI
                     KRMILKEKTAKIDYAVVVNAQTLQPLNLIKGKTLIALAAWIGKTRLIDNTIVNFN"
     gene            846..1055
                     /locus_tag="VJA84_04220"
     CDS             846..1055
                     /locus_tag="VJA84_04220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013823152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoisovalerate dehydrogenase"
                     /protein_id="HLD41366.1"
                     /translation="MDKEIIFIVEESPEGGYQAQALGFSVYTEAESLEELKAKIKEAI
                     ECHFEENKTPHIVRLHMVKDEVMAI"
     gene            1052..1294
                     /locus_tag="VJA84_04225"
     CDS             1052..1294
                     /locus_tag="VJA84_04225"
                     /inference="COORDINATES: protein motif:HMM:NF019540.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003729 - mRNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicA family
                     toxin"
                     /protein_id="HLD41367.1"
                     /translation="MKIPRDIGGQELARLLSKYDYQITRQKGSHIRLTTRINGEHHIT
                     IPNHMPLKIGTVSSILTDISEHLKMDKRALIIELFR"
     gene            1291..2106
                     /locus_tag="VJA84_04230"
     CDS             1291..2106
                     /locus_tag="VJA84_04230"
                     /EC_number="1.4.1.21"
                     /inference="COORDINATES: protein motif:HMM:NF009828.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate dehydrogenase"
                     /protein_id="HLD41368.1"
                     /translation="MTLKKIGIVGCGVIGSKIAQTVCSDLKGKAILNALCDLDLAKAK
                     DLAGKLRKKNIVVSDLYELIRKSDFIVEAATAEVSADIARKAINSKRDCLIMSVGGVL
                     DAPDIFSLAKKKGVSLHIPSGAVCGIDGLKAHRLAGLKKVLITTRKPAIAFKNAPYVT
                     RNKIDLSRIKKETTLFSGKAKDAVKAFPQNINVAAVLSLAGIGKDKTMVRIIASPDTN
                     INSHEIEIESKAGKSFIRCENTPCPDNPKTSYLAVLSAISALKQIFDPVKIGT"
     gene            2200..>2401
                     /locus_tag="VJA84_04235"
     CDS             2200..>2401
                     /locus_tag="VJA84_04235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41369.1"
                     /translation="MAEKVSKQGIKRKDGYLYFIDKSGDVSCAKMARGGKKGGKPEKV
                     TKVGVKKESGYLYFLDKQGDVSR"
BASE COUNT          760 a          456 c          605 g          580 t
ORIGIN      
        1 atcccgcgca tgcgcgcctt tacagatgaa gcaaagaaaa aaggcaagac tatcggcttt
       61 gtgcctacta tggggtatct gcatccgggg catctctccc tgatcaggca ggccaaggat
      121 gactgcgata tctgtgtggc gagcattttc gtgaacccaa tccagttcgg ccctaaggaa
      181 gattatcgcg ggtatccccg cgatatggaa atggatcgca tcctctccag gtcagccggg
      241 gcggattgtg ttttttctcc ttcggcagtc cagatgtatc ctcctgatta tcagacctat
      301 gtcaatgtgg aaaaaatcag ctccggtttg tgcggctcgt cgcgtcccgg acattttcag
      361 ggagtagcga ccgtagtaaa taagttattc aatatcgtcc agccggatat cgcctatttc
      421 ggggaaaagg attatcagca ggcattagtg ataaagagaa tggtttcgga cctgaatatg
      481 ccgcttaaaa tcaaggttat gccgattatc agagaggctg acggcctggc catgagctcg
      541 cgcaaccgtt atttaaacca ttcagaaaaa caagaggcga ttattttata tcagtctctt
      601 caaagggcca gagagatgat ttcaggaaaa gaaagaaaca gccaaaaaat aatcaaggaa
      661 atcaagagaa tgattcttaa ggaaaagacg gcaaagatag attatgcggt ggtagtaaat
      721 gctcaaacat tgcagccgct taatctcatc aaaggtaaaa ccttgattgc cttggcggcc
      781 tggataggta aaaccagatt gattgataat acgattgtga atttcaatta ggaggtgatg
      841 aagatatgga taaggaaatt atatttatcg tggaagaatc ccctgagggc ggataccagg
      901 cgcaggcctt gggattttct gtctacacgg aagctgaaag tctggaagaa ttaaaagcta
      961 aaattaagga agctatagaa tgccattttg aggaaaataa gacgcctcat attgtcaggc
     1021 tgcatatggt aaaggatgag gtaatggcaa tatgaaaata cccagagata tcggcggaca
     1081 agagttggcg aggctcctaa gtaaatatga ttaccaaatc accagacaga agggaagcca
     1141 tataagatta acaaccagaa taaatggaga acaccatata actattccca atcatatgcc
     1201 gttaaagata ggaaccgtca gtagtatatt gaccgatatt tctgaacatc ttaaaatgga
     1261 taagcgggct ttgattatag agttgtttag atgacactta aaaagatcgg gatcgttggc
     1321 tgcggggtga taggctcaaa gattgcccag accgtctgtt cagatttaaa gggtaaggct
     1381 atactaaacg cgctttgtga tctggatttg gctaaggcga aggatttagc cggaaaatta
     1441 agaaaaaaga acatagttgt ttccgacctg tatgagttga taagaaaatc tgattttata
     1501 gttgaggccg cgacagcgga agtttccgcg gatattgcca ggaaagcaat taattcaaaa
     1561 cgcgattgtc tgataatgag cgtggggggg gtcttagacg cgccggatat ctttagttta
     1621 gctaagaaga aaggtgtttc tctccatatt ccttccgggg ccgtctgcgg gatagacgga
     1681 ttgaaggccc acagactggc cggattaaaa aaggtattga ttactacccg caaacccgcc
     1741 atagccttta agaatgcccc gtatgtaacg cgcaataaga tagaccttag ccgaataaag
     1801 aaggaaacca cgcttttctc cggtaaggcc aaggacgcgg tcaaggcatt cccccaaaat
     1861 attaatgtgg ccgcggtttt aagcctggct gggattggca aagacaaaac tatggtcagg
     1921 ataatcgcct cgccggatac aaatatcaat agccatgaaa tagagattga gtctaaggcg
     1981 ggcaagtcct ttatccgctg tgagaatacc ccctgcccgg acaatcccaa aaccagttat
     2041 ctggcggtat tatcggcaat cagcgcgtta aagcagattt ttgatccggt aaaaataggg
     2101 acataaattt tgagaaaaaa taagggtcga tggtctatgg tcgatagaga atgaaaacag
     2161 aagtgtttta aaaatacgat tgaagggagg tgaaaaatta tggcagaaaa ggtatctaag
     2221 caaggcatta agagaaaaga tggttacctt tatttcattg acaaaagcgg cgatgtttcc
     2281 tgcgccaaga tggctcgcgg cggaaaaaag ggaggcaaac ccgaaaaggt aaccaaggtt
     2341 ggagtaaaga aggaatccgg ctatctctat ttcctggata agcaaggcga tgtttcccgc
     2401 g
//
LOCUS       DATDUB010000213         2520 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_2335595, whole genome shotgun sequence.
ACCESSION   DATDUB010000213 DATDUB010000000
VERSION     DATDUB010000213.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2520)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2520)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2520
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2335595"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..588)
                     /locus_tag="VJA84_04240"
     CDS             complement(<1..588)
                     /locus_tag="VJA84_04240"
                     /inference="COORDINATES: protein motif:HMM:NF016398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheC"
                     /protein_id="HLD41370.1"
                     /translation="MTDLALSPIQMDALKEVGNIGAGNAATALGAALNKTVNINVPLV
                     KFITTAQFNEPEGDGAASYSRGHDDSLLKEPQDVSIAVFSRITETIKGGIMVLFSKKN
                     SLLLSGLLTKKKPDTSGLLTLVEVSALSETSYILSCSYLDSVGLMLNQRLLIPCSPQT
                     AIDKTGGLNKALIKRFLGEEVQYAMSIENIMTVDGR"
     gene            complement(585..>2520)
                     /locus_tag="VJA84_04245"
     CDS             complement(585..>2520)
                     /locus_tag="VJA84_04245"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="chemotaxis protein CheA"
                     /protein_id="HLD41371.1"
                     /translation="IFLSESQEYLNLISGCLVKLEGNPGDLESLNEIFRCTHTLKGMS
                     ATMGYDLIAQLSHQMENLFDELRGQRKTVTSEIIDTLFAAVDILEESIQDIKLKTESK
                     INIAPCIEALKKFLTEETPPLKRKAVLSMVDAAEFTGNDLERFQEAQDAGNTIFKITL
                     ILAETCVMKEARAFLILTNLKKLGEIVFAFPSIEELKEAKFDRSFMIVLAGKENKETI
                     HETLLNISEVEEANIAVMEIKAPAAGVAAPQQPTAEGHSLKKIQSIRIPVQRLDRIMN
                     FMGELAIAKIRLLQVVQTSKIKQLEEIAFTLDHLTAALQDEIMQTRLLPVAYILDNFT
                     RVVRDLARKKQKEVELEISGSEIELDRVVLDEIGDPLIHLLRNAIDHGIESPEERKAK
                     GKNAKGKIHINVARQKGQISIEVADDGRGVDFEVVRRLAIERGVLSEQEASGLEQKRI
                     LDILTMPGFSTAKEITDTSGRGVGLDVVKIKMETLGGRLDFETKPGKGTKFFLTIPLT
                     LAIIKAMLVKVHNEILAVPLMNIRETIKVLPGELKFLQNFEVIRVREEVIPVLRMEKE
                     LNIPACSEDEGRASKQLSLVIVEFEKKALALLVSRIIGEQDIVVKPLPAFVKKTKGIA
                     GATILGDGKVALILDIMGLR"
BASE COUNT          526 a          640 c          640 g          714 t
ORIGIN      
        1 tctgccgtca accgtcataa tgttttcaat ggacatcgcg tattggacct cttcgcccag
       61 gaatcttttt atcaaggcct tgttcaggcc gccggtctta tctatggccg tctggggcga
      121 gcaagggatt aagagccgtt gattaagcat taagcccacg gagtccagat aggaacagga
      181 aagtatataa gatgtttctg ataaggcgga aacctcaact aaggtgagca ggccgctagt
      241 gtcgggtttt tttttagtca gcaagccgct tagcaagagg ctgttttttt tggagaaaag
      301 gaccataatc ccgcctttta ttgtctcggt tatccgggaa aatacggcaa tgctgacatc
      361 ctggggctct tttaataaac tgtcatcatg gccgcggcta taggaagccg cgccatcgcc
      421 ctctggctca ttgaactgcg cggtggtgat gaacttgaca agcgggacat ttatgttgac
      481 cgtcttgttc agggccgccc ccagggcggt agcggcgttt ccggccccga tattgccgac
      541 ttccttgagg gcgtccatct gtattgggga taaggctaag tccgtcatcg caggcccatt
      601 atatccaaaa tcaaggccac cttgccgtct cctaagatgg tggctccggc tatgcctttg
      661 gtcttcttga caaaagcggg aaggggcttt accacgatat cctgttcccc gattatccgg
      721 ctgactaaaa gggccaaggc cttcttttca aattccacta ttaccagaga gagttgtttt
      781 gaggcccggc cctcatcttc ggaacaggcc gggatattca attctttttc catccgcagc
      841 accgggatga cctcttcccg gacccgaatt acctcaaaat tctggagaaa ctttaattct
      901 cccggcagca ccttgatggt ctcccggatg ttcattaaag gaactgccag gatctcattg
      961 tggaccttga ccagcatggc cttaatgatg gctaaggtca aaggaatggt gaggaaaaac
     1021 ttagtccctt tccccggttt ggtttcaaaa tccagccttc ctccgagggt ttccattttt
     1081 atcttcacca catccagccc cacgcccctt cccgaggtat cggttatctc tttggcggtg
     1141 gagaaaccgg gcatagtcag gatatccaat atcctctttt gctctaatcc ggaggcctct
     1201 tgttcggaaa ggacccctct ttctatggcc agccggcgca ctacctcaaa gtctaccccc
     1261 cggccgtcgt cagccacctc tatggatatc tggccttttt ggcgggcgac attgatatgg
     1321 attttgcctt tcgcgttttt gcctttggcc tttctttctt caggggattc aatgccgtgg
     1381 tcaatggcgt ttcttaagag atggattaag gggtcgccga tttcatccag gaccacccgg
     1441 tcaagctcaa tttcgcttcc gctgatttcc agctctacct ctttttgttt cttgcgggcc
     1501 aggtcccgga ccacccgggt gaaattgtct aagatatagg ccaccgggag caggcgggtc
     1561 tgcataatct catcctgcag ggccgcggtc aggtggtcaa gggtaaaggc gatttcctct
     1621 aattgtttta tcttagatgt ctgcaccacc tgcaggagcc ggatcttggc aatggccagc
     1681 tcccccataa aattcataat ccggtctaat ctttgcaccg ggatgcggat actttggatt
     1741 tttttgagag agtggccttc tgccgttggc tgctgcgggg cggcgactcc cgcggcaggg
     1801 gcttttatct ccattaccgc gatgttggcc tcttccactt cggagatgtt cagcagggtt
     1861 tcatggatgg tctctttgtt ttccttgccg gccaggacga tcataaagga gcggtcaaat
     1921 ttggcctctt ttaactcctc tattgaagga aaggcgaaaa caatctcccc cagcttcttt
     1981 aaattggtga ggattaagaa agcgcgggcc tctttcatca cgcaggtttc agccaggatg
     2041 agcgtgattt tgaatatcgt attcccggca tcttgggcct cctggaagcg ctccaggtcg
     2101 tttcctgtga attccgcggc atccaccata gagaggacgg cttttctttt taggggaggg
     2161 gtttcttcag tcaggaattt ctttaaggcc tctatgcagg gggcgatgtt tattttggat
     2221 tctgttttca gctttatgtc ctggatggat tcttccagga tgtctaccgc ggcaaagagg
     2281 gtgtcaatga tctccgaggt gacggttttc ctttggccgc gtagttcatc aaagaggttc
     2341 tccatctggt gggaaagctg ggctatcaag tcatagccca tagtcgcgga catacctttt
     2401 aaggtatggg tgcagcggaa gatctcattc agagattcta aatccccggg gtttccctcc
     2461 agcttgacta aacagccgct gatcaggttc aggtattcct ggctttcaga taagaatatt
//
LOCUS       DATDUB010000214         2114 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1998268, whole genome shotgun sequence.
ACCESSION   DATDUB010000214 DATDUB010000000
VERSION     DATDUB010000214.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2114)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2114)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2114
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1998268"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            6..101
                     /locus_tag="VJA84_04250"
     CDS             6..101
                     /locus_tag="VJA84_04250"
                     /inference="COORDINATES: protein motif:HMM:NF016432.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma factor-like helix-turn-helix DNA-binding
                     protein"
                     /protein_id="HLD41372.1"
                     /translation="MKVSRERIRQIENAALKKLRKLAAAQEKELG"
     gene            98..952
                     /locus_tag="VJA84_04255"
     CDS             98..952
                     /locus_tag="VJA84_04255"
                     /inference="COORDINATES: protein motif:HMM:NF012742.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HLD41373.1"
                     /translation="MKKSKAYGLIVPRFEDVLHSFYASEIIKGVSLSASHLKADVLIH
                     ITERLEHEDWLNWPILNSNYLNGVLFADINGDKATLMKVIARGIPYLVLNNNFSENIN
                     CISIDNEKAAIEAVDYLVKLGHKRIATIAGDLHTQAGKSRLKGYKEAMLKAGLPVKDE
                     YLTVGGFLRTPAREAAKKLLHLHQRPTAIFAASDVMALEAVDFARKEGLSVPEDLSIV
                     GFDDNPIAVYSSVGLTTVRQPIVEMGQLGLETLDQITQGKAVLPVKTVLPAKLVLRAS
                     CVKPRKEK"
     gene            1055..1588
                     /locus_tag="VJA84_04260"
     CDS             1055..1588
                     /locus_tag="VJA84_04260"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018066748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003999 - adenine
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HLD41374.1"
                     /translation="MKTNKYLAESIRSIPDFPKPGILFRDITTLLKDKKAFKTAVDLI
                     AKKFSSKKIDYVVGVEARGFIFGGALSPKLNAGFIPVRKKGKLPWKTKGITYNLEYGA
                     DTLEIHEDALKPKDKVLIVDDLLATGGTVKAVADLVEGQGAKIVGIAFVIELVDLKGR
                     EKLKKYPIVSLVEFEGE"
     gene            1594..1666
                     /locus_tag="VJA84_04265"
     tRNA            1594..1666
                     /locus_tag="VJA84_04265"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1628..1630,aa:Arg,seq:cct)
     gene            1714..>2114
                     /locus_tag="VJA84_04270"
     CDS             1714..>2114
                     /locus_tag="VJA84_04270"
                     /inference="COORDINATES: protein motif:HMM:NF004981.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol phosphate phosphatase
                     domain-containing protein"
                     /protein_id="HLD41375.1"
                     /translation="MYDLHIHSLLSDGALLPSEICRRYEEKGYQIIAITDHSDYSNIK
                     NNVSSIVEFCRRWPKKSRIKVLPGVELTHLPLEQFPPLVKYCRKQGIKIIIAHGESPV
                     EPVEAGTNRQAVLSGIDILAHPGNISQEEAG"
BASE COUNT          574 a          451 c          587 g          502 t
ORIGIN      
        1 aaaagttgaa ggtttcccgg gagagaataa ggcagataga aaacgcggct ttaaaaaaac
       61 tgcgcaaatt agccgcggcc caagaaaagg agttaggatg aaaaagtcaa aggcctatgg
      121 tttgattgtt ccccgttttg aagatgtcct gcattctttt tacgcctcgg aaattattaa
      181 gggcgtaagc ctgtcggcaa gccacctgaa ggcggatgtg cttatccata tcaccgagcg
      241 cctggagcac gaggattggc tgaattggcc gatattgaat tcaaactact taaacggggt
      301 attgttcgcg gatattaacg gggacaaggc tacgcttatg aaggtgattg cccgggggat
      361 accgtatctg gtcctgaaca ataatttcag cgagaatatt aactgtattt ccatagataa
      421 tgaaaaggcg gcaatagaag cggtagatta tctggtaaag ttagggcata agaggatagc
      481 cactattgcc ggggatttgc atacccaggc gggtaagtcc aggcttaaag gctataaaga
      541 ggccatgctt aaagccggcc tgccggtaaa ggatgaatac ctgactgtag gcgggttcct
      601 gcgcaccccg gcccgggagg cggccaagaa actcctgcat ctgcaccaga ggccgactgc
      661 catatttgcc gcttcggatg tgatggcctt ggaggcggta gattttgccc gcaaggaagg
      721 actgtcagtg ccggaagatt tgtccatagt cggttttgac gataatccca tcgcggtgta
      781 ttcttcggtg ggcctgacca ccgtccgaca gccgattgtg gagatgggac aactggggtt
      841 agagacctta gaccagatca cccagggtaa ggcggtttta ccggtaaaga cggttttacc
      901 ggccaagctg gtgttgaggg cgtcctgcgt aaagccaagg aaagaaaaat aaagggtgca
      961 ccagcgcaca agggcaccag agcacaaaat agccttggtg ctcttgtgac ttgtgttctt
     1021 gtgacccgtg agtagtgatt gtaaaaggag gcctatgaaa actaataaat accttgccga
     1081 aagcatccgc agtatcccgg attttcccaa acccgggatc ttgtttcgcg atattactac
     1141 tttgctcaaa gacaaaaagg cctttaagac ggcggtggat ttaattgcta agaagttttc
     1201 ctctaagaag attgattatg tggtcggggt tgaggccagg gggtttattt tcggcggggc
     1261 gctatctccc aagttaaacg ccgggttcat cccggtgcgc aagaaaggca agcttccctg
     1321 gaagaccaaa ggcattacct ataatctgga atatggcgcc gacaccctgg agatccacga
     1381 ggatgccctt aagcccaaag acaaggtctt gattgtggat gatttattag ctaccggagg
     1441 cacggtcaag gcagtggcgg atttagtgga gggccagggg gctaagatcg tggggattgc
     1501 ctttgtgatt gaattggtgg atttaaaagg ccgggagaaa ctcaaaaaat acccgatagt
     1561 ctctttggtg gaatttgaag gggaatagaa ttcgcccctg tagctcataa ggatagagca
     1621 gtggtttcct aaaccgcgtg ggcaagttcg attcttgcca ggggcataaa tacagaacta
     1681 agaattaaga gctaagaact aagataacct aagatgtatg atttgcatat acactcgctt
     1741 ctaagcgatg gggcgttgct tccttcggag atctgccgcc gttatgaaga aaaaggatat
     1801 caaatcattg ccatcaccga ccattccgat tacagcaata taaaaaataa tgtcagctca
     1861 atagtggaat tctgccggcg ctggccaaag aaatcccgga ttaaggtctt gccgggcgta
     1921 gagctgaccc atctgccttt agagcaattc ccgcctttgg ttaaatattg ccgtaagcag
     1981 gggattaaga ttattatcgc tcacggcgag tcgccggttg agccggtaga ggcagggact
     2041 aaccgccagg ctgttctttc cggtattgac atcctggccc atcccggcaa tatcagccaa
     2101 gaggaggctg gatt
//
LOCUS       DATDUB010000215         2194 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1839435, whole genome shotgun sequence.
ACCESSION   DATDUB010000215 DATDUB010000000
VERSION     DATDUB010000215.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2194)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2194)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2194
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1839435"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..651
                     /locus_tag="VJA84_04275"
     CDS             <1..651
                     /locus_tag="VJA84_04275"
                     /inference="COORDINATES: protein motif:HMM:NF015714.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComEC/Rec2 family competence protein"
                     /protein_id="HLD41376.1"
                     /translation="GIVVFVVLFLLKALRIKRKCRYFLAIPILFIHMCAVGAQASVIR
                     ATLMAVVVLIGYLLERDSDIINSLSLAALIILGYNPRQVFDIGFQLSFVSVAGIVFLS
                     PRIIGWFKLKSKSNAGLRFLANSFAVSLAAWISTFWPILYYFRIVTPITVLANLIIVP
                     LVSLVIILGFTLCLSALICPAIALPIAVTIDFSMFWLFKITHQLSSLPFAYYYIGS"
     gene            963..1832
                     /locus_tag="VJA84_04280"
     CDS             963..1832
                     /locus_tag="VJA84_04280"
                     /inference="COORDINATES: protein motif:HMM:NF024915.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HLD41377.1"
                     /translation="MWTPQKSRWVNPKASVKPSPQEQLKFAQALYEQSKYNEAIDECR
                     KLIKYYPKAFEASEAQFYMALSFEGEKKLYEAFQAYQKVIDKYPFSKRLDEIIEKELR
                     IAQAFMAGEKRKIGKVELPVENPAIEILRKVVDNSAYGKSASYAQYLLGMTLKEAFRY
                     QEAREEFEKVGTTYPESEWVSQAKFQAADCASKIAPKSDYDQELTKEAKKKFEEFVKS
                     QPQAELKKEAVSKIDALKEKEAEGALKIAEFYEKQKKFEAARIYYQEIIDKCPYCLSA
                     TPARDKLKELEKK"
     gene            1829..>2194
                     /locus_tag="VJA84_04285"
     CDS             1829..>2194
                     /locus_tag="VJA84_04285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HLD41378.1"
                     /translation="MKKHGFFLLSAFCLLLSVLSGCGYTSRTIYRGPYKTVFIEPFAN
                     KVDVLSEDATSLSQRFRTYHPLMENDIRAAVINRFMYDGGFRIAKKDEADIILKGELI
                     DYKRDALRYENNQEDVSEYR"
BASE COUNT          560 a          482 c          558 g          594 t
ORIGIN      
        1 gggatagtgg tttttgtggt cctgttttta ttgaaggctt taagaataaa gcgcaaatgc
       61 cgctattttc tggctatccc gatattgttt atccatatgt gcgcggtagg ggcccaggcc
      121 tcggtaatcc gggccacctt gatggcggta gtggttttaa tcggatatct gctggaaagg
      181 gattcggata tcattaacag tttaagcctg gccgccctga taatcctggg atataacccc
      241 cggcaggtat ttgacatcgg ttttcagctt tcttttgtca gcgtagctgg tattgttttt
      301 ttatctcccc ggattatcgg ttggtttaaa ttaaaatcca aaagtaacgc ggggcttaga
      361 tttctggcaa acagtttcgc ggtctctctg gcggcctgga tttctacttt ctggcctatc
      421 ctttattatt tccggattgt aaccccaata accgtattgg ctaacctgat tatcgtgccc
      481 ttagtcagtc tggtgataat tttaggattc accctttgtt tatcggcgct gatttgtccg
      541 gctatagcct tgcctatagc ggtgaccata gatttttcta tgttttggct gtttaagatt
      601 acccatcaac taagcagtct gccatttgca tattattata taggaagcta ataatgtata
      661 gatggtagat tgttagaagg aagagttttc ctaagattgc ccgtaatgcg tcagtgaata
      721 ggggaatttg atgctttgtc attcccgcga aagcgggaat ccagacggct ggattctccg
      781 gtcaagccgg ggaatgacag aatgcccctg cttactgacc ggttacgatt gccccctacc
      841 tttgattgac aaaagccgta ttctgtgata gagtaaaaat cgctatgaga agaattagcc
      901 tgatattagc ggtttttact ctttttttgt cctgacttat ccagccggcc tatcctttct
      961 ggatctggac ccctcaaaaa agccgttggg taaatcctaa ggccagcgtc aaaccctctc
     1021 cccaggaaca gcttaagttc gcccaggctc tttatgaaca gtcaaaatac aatgaggcca
     1081 ttgacgaatg ccgcaagctg atcaagtatt atcctaaggc ctttgaggcc tcggaggccc
     1141 agttttatat ggccttgagc tttgaagggg agaagaagct gtatgaggcc tttcaggcct
     1201 atcagaaggt cattgataaa taccctttca gcaagcgctt agatgagatt attgaaaagg
     1261 aattgaggat tgcccaggcc tttatggccg gggagaagcg caagataggt aaggtggagc
     1321 ttccggtgga gaatccggct attgagatcc tgcgcaaggt ggtggataac tcggcctacg
     1381 gcaagagcgc ttcctatgcc cagtatcttc tggggatgac cttgaaagag gcctttcgtt
     1441 accaggaggc cagggaggag tttgagaaag tggggaccac ctatccggaa agcgaatggg
     1501 tctcccaggc caagttccag gccgccgact gcgccagcaa gattgcccct aagagcgatt
     1561 atgaccagga gctgaccaaa gaggccaaga aaaagtttga ggagtttgtc aagagccagc
     1621 ctcaagcaga gcttaaaaaa gaggcggttt ccaagataga cgccttgaaa gaaaaagagg
     1681 ccgaaggggc gctaaagata gccgagttct acgagaagca aaagaagttt gaggccgccc
     1741 gaatctacta ccaggagata attgacaaat gcccctattg cctaagcgct accccggcgc
     1801 gggataaatt aaaggagctg gaaaaaaaat gaaaaaacat ggattttttc tgctttccgc
     1861 attttgcctt ttgctttctg ttttatccgg ctgcggctac accagccgca ccatctaccg
     1921 cgggccttat aagactgtct ttattgagcc gtttgccaat aaggtggatg tgctttcgga
     1981 agacgccacc agcctttccc agaggttcag gacataccat cctcttatgg aaaacgacat
     2041 ccgggccgcg gtaatcaacc gttttatgta tgacggcgga tttcgtattg ccaagaagga
     2101 tgaggcggat atcatcctta agggagagct tattgactat aaacgggacg ccctgcgtta
     2161 tgagaataac caggaggatg tctcggaata ccgg
//
LOCUS       DATDUB010000216         2798 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1168526, whole genome shotgun sequence.
ACCESSION   DATDUB010000216 DATDUB010000000
VERSION     DATDUB010000216.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2798)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2798)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2798
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1168526"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            271..1398
                     /locus_tag="VJA84_04290"
     CDS             271..1398
                     /locus_tag="VJA84_04290"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024831.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HLD41379.1"
                     /translation="MKRIRVLQVGKYYYPFRGGMESSLYTLVNSLKDEVDFQVLVSNT
                     KVVTEIGFVDGVKVIRMARWGSFFSQPLNPGLFFWLKTLKADIIHLHLPNPLAALFYL
                     LANPCSRLIVSYHSDILRQNIFRLLYQPFLNRLLSRAEAIVATSQNLLDSSLLLGRFR
                     AKCWIIPHGIDLDRFKITPELERRAGEIKARINLPIVLFVGRLVYYKGLEYLIRAMKD
                     MEARLVVVGKGPLGFSLRALSRILGVKDKISWPGEVPDEELKAYYLASEMLVLPSCQN
                     SEAFGLVILEAQAFAKPVISARLPTGVSFINRHQETGLVVPARDAGALKEAVRTLLDS
                     KELRSEYGWNGRKRVEHEFTSRIMAGKFLTLYQAISNQTVL"
     gene            1585..>2798
                     /locus_tag="VJA84_04295"
     CDS             1585..>2798
                     /locus_tag="VJA84_04295"
                     /inference="COORDINATES: protein motif:HMM:NF025179.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNVR domain-containing protein"
                     /protein_id="HLD41380.1"
                     /translation="MPQYELNFRDYLRIFRKRRFTIIAVFLLVTAFSVFTIPKSEPVY
                     HALTTIKIEERKTVGGMLTDQVVYNPADRMESETKIIRGYQIMKGSALKLGLIDESSS
                     TDEINEAVSGLQDAISTERVGSATNMISIIATADEPKKAMDMANIVAEVYINDNLREK
                     AKEAKNARIFIEEQLVAIEERMRKVEKDLRRAGVNEEGKKMAGSFQEKQAQMQLRLNE
                     LLQKYTDKHPLVLQLKDQISQMESNAQKQGVSGEEIDYMRLAREDEANKKLYTMFKEK
                     LEEARISEAQKVSDISVVDPAIMPTGSAGTDRRSGVMLSGLLGIVVGIILAFVVESLD
                     TSIGTIEDVENITKLSVLGVVPSIRVRPEQDEKNIFKKWINAAFPFLEKRLDEPYVRL
                     IVHNDPKSPISEA"
BASE COUNT          737 a          588 c          773 g          700 t
ORIGIN      
        1 tgctccgggc atttaagaga agaaagatat ttttaaataa gcgcgctctt gaaagccgga
       61 attcccggat gagcgatagg aagattcttg aaatgatgtc gtgaggatga cggactgcgg
      121 caggtgttcc gcgcgcagtt ccgcaggcgt cattccacaa tgtaattatc cagaaaaacg
      181 ccgaggatgt ttgagcgcgg aatacctgcc gcggtccggc agggtgcgat aaatcgcacc
      241 gctactcatc aggttaggca taagagtttc gtgaaaagaa taagagtttt acaggtgggc
      301 aagtattatt atcccttccg gggggggatg gagtccagcc tttatacctt agtcaacagc
      361 ctgaaagatg aggttgattt tcaggttttg gtttccaata ccaaagttgt cacggaaata
      421 ggatttgtag acggggtaaa ggtaatccgc atggccagat ggggaagttt tttttcccaa
      481 ccgctcaatc ccgggctttt cttttggctg aaaacgctta aagccgatat catccatctg
      541 cacctgccca atcctttggc ggcattattt tatctgttgg ccaatccctg ttcccggctg
      601 attgtctcct atcacagcga tatcttaagg cagaatatct ttaggctgct ttatcagcct
      661 ttcttaaata ggctgttaag ccgggccgag gccattgtgg cgacttcgca aaacctctta
      721 gacagttctc tgctcttagg ccgattccgg gccaagtgtt ggataatacc tcacgggatt
      781 gacctggata gatttaagat tactccggag ttggaaaggc gggcagggga aatcaaggcg
      841 cgaattaatc tgcctatcgt tttatttgtg ggccggctgg tttattataa aggcttagag
      901 tatttaatcc gggcgatgaa agatatggag gccaggttag tggttgttgg gaaggggccg
      961 ttaggattta gcctgcgcgc gctatcccgc attctgggag taaaagataa aataagctgg
     1021 ccgggtgagg tcccggatga ggagcttaag gcttattact tagcctcgga gatgctggtt
     1081 ttgccttctt gccaaaacag cgaggccttt ggcttggtta tcctggaggc ccaggctttt
     1141 gccaagccgg taatcagcgc ccggcttcct acgggggtga gttttatcaa ccggcatcag
     1201 gaaaccggat tagtagtccc ggcgcgagac gcgggagctt tgaaagaggc tgtccgaaca
     1261 ttattggatt ctaaggaatt gcgctctgaa tacggctgga atggccgtaa gcgggtagag
     1321 catgaattta ccagccggat aatggcggga aaattcttaa ccctatatca ggcaataagt
     1381 aatcagactg tgttataatg tcatcctgag cggatagcga aggatctcgt tttttaaatt
     1441 agcgacgaga ttcttcggtc gctctgctcc ctcataatga caaaatggtc aattcaagag
     1501 attgcgacac agtctgaatg cctgaaaagg cttgataatt gccggttttt atgttatttt
     1561 gagagggaat aagaaaggag agccttgcct caatacgaac taaatttccg ggattacctg
     1621 cgcatcttcc gcaagcgcag gtttaccatt attgccgtat tccttttggt taccgccttc
     1681 agcgtattta ctatccccaa atccgaacct gtttaccacg cccttaccac cattaaaata
     1741 gaagaacgta aaaccgtcgg cggaatgctt accgaccagg tggtctataa tcccgcggac
     1801 cggatggaat ccgagaccaa gatcatccgc gggtatcaga ttatgaaagg gtctgctctt
     1861 aagttgggcc tgatagatga gtcttcatcc acagacgaga ttaatgaggc ggtaagcggc
     1921 ctccaagacg ctataagcac ggaaagggtg ggctcggcca ccaatatgat cagtattatt
     1981 gctaccgcgg atgagcccaa gaaggcaatg gatatggcca atatcgtggc cgaggtttat
     2041 atcaatgata acctgcggga gaaggccaag gaagccaaga atgccagaat cttcattgag
     2101 gagcagttag tcgccattga agagaggatg cgtaaggttg agaaggattt aaggcgggcc
     2161 ggggttaatg aagaaggcaa gaagatggcc ggttcatttc aggagaagca ggcacagatg
     2221 cagcttaggc ttaatgaact tctccagaag tatacggata agcatccgtt agtcctgcag
     2281 ttaaaggatc agatcagcca gatggaatct aacgcgcaga aacaaggggt atccggtgag
     2341 gaaattgatt atatgcgtct ggcgcgggag gatgaggcga ataaaaagct ttacactatg
     2401 tttaaggaaa agctggagga ggcccggatc tccgaggccc aaaaagtcag cgatatctcg
     2461 gtggtggacc cggcgattat gcctaccggc tctgccggaa cagacaggcg ttcaggggta
     2521 atgcttagcg gcctgctggg tatagtggtg ggaataatcc tggcctttgt ggtggaaagc
     2581 ttagatacct ccattgggac gattgaggat gtggagaata tcaccaagct ttcggtatta
     2641 ggggtagtcc cttcaataag ggtgcggccg gagcaggatg agaagaatat ctttaagaaa
     2701 tggataaacg cggcattccc tttcctggaa aaaaggctgg atgagcctta tgtgcgcctg
     2761 attgtgcata atgaccctaa atcccccata tccgaggc
//
LOCUS       DATDUB010000217         2671 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_1999953, whole genome shotgun sequence.
ACCESSION   DATDUB010000217 DATDUB010000000
VERSION     DATDUB010000217.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 2671)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2671)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2671
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1999953"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..382
                     /locus_tag="VJA84_04300"
     CDS             <1..382
                     /locus_tag="VJA84_04300"
                     /inference="COORDINATES: protein motif:HMM:NF013069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HLD41381.1"
                     /translation="KSIAVYAGMMEVIGIGAALCALITTFITAAYEKQSKEGKIKTKE
                     DIYAVISEGASRALRPAMITCSADILGLMPAMWASGIGGEFLKRYTAPIIFGLFTALI
                     LSLIVIPVFYVIWKADFAKRDVNG"
     gene            375..>2671
                     /locus_tag="VJA84_04305"
     CDS             375..>2671
                     /locus_tag="VJA84_04305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007222310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IC family P-type ATPase"
                     /protein_id="HLD41382.1"
                     /translation="MAKQCWHLNIDEAALALGADLSLGLVSAEAETRLKIYGPNQLKE
                     KKGKSPLSIFLEQFQDFIVWILIGAALVSGFLQEWVDALAIVAIVILNAILGFIQEYR
                     AEKSLAALKKLSSPNSKVIRDGRHNIIPSGDLVPGDLIELEAGDNVPADSRVVWFTAN
                     FNAQEASLTGESLPVAKTALALEEKEIPLAERANMVYMGTSTASGKARVIVCSTGMLT
                     ELGRIAGMIQEVQEETTPLQRKLEEFGKWIVYLCFVLVGLVFLLEWARGGKLIEVFLT
                     SVSLAVAAIPEGLPAVVTIALGLGVQRMVKRHALIRKLPSVETLGCATVICSDKTGTL
                     TKNEMTAQAVFAGGEIFKVSGIGYEPKGEFLLNEKSLNVKDYPSLRIALQCALLCNAA
                     ELQKDSNGYKIVGDPTEGALLTAAAKAGLWKEALEKEFPFVEEIPFDSQRKKMTIARK
                     DKEGLIAFTKGAPDVLLADCAEIEENGQARALNDDDREKILAVNNDLAGQALRVLAVA
                     YRRFSRPPDTYEAGIIEKGLVFAGLIAMIDPPREEVKKAMFSCAQAGIKTVMITGDHK
                     NTAVAIAKELGFFKQHSRALTGEELDRLSEEEFSRDLENIPVYARVSPEHKLRIVRAW
                     RARKEVVAMTGDGVNDAPAVKEADIGVAMGITGTDVTKEVSDMVITDDNFASIVAAVE
                     EGRGIYDNIKKFVHYLLSCNAGEILVMFVSSLAGWPVPLLPIHILWVNLVTDGFPALA
                     LGVDPVEPGVMNRPPRDPDEKVLTR"
BASE COUNT          631 a          598 c          783 g          659 t
ORIGIN      
        1 taaatccata gccgtctatg ccgggatgat ggaggttatt ggaatagggg cggccttatg
       61 cgccctgatc actaccttta ttaccgctgc ctatgagaaa cagagtaaag agggcaagat
      121 caagaccaaa gaggatattt acgcggttat cagtgaaggg gcctctcggg cccttcgtcc
      181 ggcaatgatt acttgttccg cggatatcct ggggcttatg ccggcaatgt gggccagcgg
      241 catcggcggg gagttcttaa agcgctacac cgctccgatt atcttcgggc tgtttacagc
      301 cctgattcta tctttaattg tgataccggt tttttatgta atctggaagg cggatttcgc
      361 gaagagggat gtcaatggct aaacaatgct ggcatcttaa tattgacgag gcggcgctag
      421 ccttaggcgc ggatttgtcg cttgggcttg tttctgccga agctgaaacc aggcttaaga
      481 tttacggccc caaccagctc aaggaaaaga aaggcaagtc cccactaagc atattcctgg
      541 agcagtttca agattttatc gtttggatcc tgattggggc ggcactggta tccgggtttt
      601 tgcaggaatg ggtggatgcc ctggctatcg tggctattgt tatccttaat gccattttag
      661 gttttatcca ggaataccgg gccgagaaat ccttggccgc gttaaagaaa ttatcctcgc
      721 cgaattccaa ggtcatccgc gacggccggc ataatattat tccttccggc gatttagttc
      781 ccggagacct gattgagttg gaggccgggg ataatgtccc tgcggacagc cgtgtggttt
      841 ggtttaccgc taattttaac gcccaggagg ccagccttac cggagagtct ctcccggtag
      901 ccaagaccgc cttagctttg gaagaaaagg agattcccct ggcggaacgg gcgaatatgg
      961 tttatatggg aacttcaacc gcctccggca aggcccgggt aatagtctgc tcaaccggaa
     1021 tgctgactga attgggccgg attgccggga tgatccagga ggtccaagaa gaaaccaccc
     1081 ccttacagag aaagctggag gagtttggca agtggatagt atacttgtgt tttgtcctgg
     1141 taggattggt atttctttta gagtgggccc gtggaggaaa acttattgag gtcttcctta
     1201 cctcggtcag cctggctgtg gcggctattc ccgaaggcct tccggcggta gttactattg
     1261 ccttgggcct gggggtgcag aggatggtca aacgtcacgc ccttatccgc aagctcccgt
     1321 cggtagagac cttaggctgt gccacagtga tctgttcgga taagaccggc accctgacta
     1381 agaacgagat gaccgcgcag gcagtctttg ccgggggaga gatatttaag gtcagcggta
     1441 ttggttatga gcccaagggc gaattcttat tgaatgaaaa atcgcttaat gttaaggatt
     1501 atccttcttt gcgaatagcc ttgcaatgcg cgctcttgtg caacgcggcg gaattgcaaa
     1561 aagacagcaa cggttataag attgtcggcg accccactga aggagcgctc ttgaccgccg
     1621 cggccaaagc tggattatgg aaagaggctt tagaaaaaga atttcctttt gtggaagaga
     1681 ttccttttga ttcccagcgc aagaagatga ccattgcgcg taaagataag gaagggctga
     1741 ttgcctttac caaaggggcc ccggatgtat tactggctga ttgcgcggag attgaggaaa
     1801 atggtcaggc cagggctttg aatgatgatg accgggaaaa gatactggcg gtaaataatg
     1861 atttagccgg acaggcctta cgggtcctgg cagtggccta tcgcaggttt agccggcctc
     1921 cggataccta tgaggccggg ataatagaaa aagggctggt ctttgccgga ttaatagcga
     1981 tgattgaccc gccgcgggaa gaggttaaaa aagctatgtt ttcctgcgcc caggccggta
     2041 ttaaaactgt gatgattacc ggtgaccata aaaataccgc ggtggccatt gctaaggaac
     2101 tgggattctt taaacagcat tcccgtgccc ttaccggcga agaattggac aggttaagcg
     2161 aagaggagtt cagcagggat cttgaaaata tcccggtata cgcccgggta tctccggagc
     2221 ataagttgcg cattgtccgg gcctggcgcg ccagaaagga agtggtggct atgaccggtg
     2281 acggggtaaa tgacgccccg gcggtaaaag aggcggatat cggggtggca atggggatca
     2341 ccgggacgga tgttaccaaa gaggtctcgg acatggtgat taccgacgat aactttgcct
     2401 ccattgtcgc tgcggttgag gaaggacggg gtatctacga caacatcaag aagttcgtgc
     2461 attatcttct ttcctgtaat gccggagaga tcctggtgat gtttgtttct tcgctggcag
     2521 gctggccggt gccgctatta cccattcata ttctttgggt gaacttagtt actgacggct
     2581 ttccggccct ggcattaggg gtggacccgg ttgagcccgg ggtgatgaat cgtccgccgc
     2641 gcgatccgga tgaaaaagtg ttaaccagac a
//
LOCUS       DATDUB010000218         6513 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Candidatus Omnitrophota bacterium isolate SMAG_U8046
            k141_162305, whole genome shotgun sequence.
ACCESSION   DATDUB010000218 DATDUB010000000
VERSION     DATDUB010000218.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37962808
            Sequence Read Archive: SRR3989338
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Omnitrophota bacterium (soil metagenome)
  ORGANISM  Candidatus Omnitrophota bacterium
            Bacteria; Candidatus Omnitrophota.
REFERENCE   1  (bases 1 to 6513)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6513)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/02/2024 12:04:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 871
            CDSs (total)                      :: 857
            Genes (coding)                    :: 852
            CDSs (with protein)               :: 852
            Genes (RNA)                       :: 14
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 11
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 0 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6513
                     /organism="Candidatus Omnitrophota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_162305"
                     /isolate="SMAG_U8046"
                     /isolation_source="soil"
                     /db_xref="taxon:2035772"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="39.534762 N 107.782602 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..421
                     /locus_tag="VJA84_04310"
     CDS             <1..421
                     /locus_tag="VJA84_04310"
                     /inference="COORDINATES: protein motif:HMM:NF014047.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TRAM domain-containing protein"
                     /protein_id="HLD41383.1"
                     /translation="SLIVGFPGETDREFKELFKFVREQRFERLGVFKYSREEGTPAFG
                     YQNQIPEKVKQARFDDLMRLQQEISLEFNQGFLGKETEVLIDEKESEGVYLGRMGIDA
                     PDVDGSVYVRAAKSLKPGDFVKVKITDIYEYDLAGEL"
     gene            418..1011
                     /gene="pgsA"
                     /locus_tag="VJA84_04315"
     CDS             418..1011
                     /gene="pgsA"
                     /locus_tag="VJA84_04315"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008704529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008444 -
                     CDP-diacylglycerol-glycerol-3-phosphate
                     3-phosphatidyltransferase activity [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HLD41384.1"
                     /translation="MNLPNQLTILRIILTAFFVFFVFIPGLAFKVLALAVFSCAALTD
                     WLDGKIAKSRNLITDFGKIMDPIADKILVLGAFLSFIQLQLIPAWTVVVIIGRESAIT
                     SLRFFALSKGRVIAASKGGKYKTVSQMAAIFIILISLIFKEAFKIGCLSLCPEFDRYA
                     GIVVYLSMLVTVILTLISGVSYIWDNRMLFSEAKDEK"
     gene            1001..1477
                     /locus_tag="VJA84_04320"
     CDS             1001..1477
                     /locus_tag="VJA84_04320"
                     /inference="COORDINATES: protein motif:HMM:NF016489.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase A"
                     /protein_id="HLD41385.1"
                     /translation="MKNNISEGLIRLISSMFYIGYSPFLPGTLASLAGFLAYVFFVRG
                     NMIFHLVLVVLCTVIGFALSDKAEKLFKRKDARQIVIDDFNGMLIGLLFLPYNLNLAV
                     IGFIVFRVMDGLKPYPIYKIDKWKGALGIMGDDILAGVYTNIILQIFWRLASPNFS"
     gene            complement(1438..1998)
                     /gene="thpR"
                     /locus_tag="VJA84_04325"
     CDS             complement(1438..1998)
                     /gene="thpR"
                     /locus_tag="VJA84_04325"
                     /inference="COORDINATES: protein motif:HMM:TIGR02258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008664 - 2'-5'-RNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA 2',3'-cyclic phosphodiesterase"
                     /protein_id="HLD41386.1"
                     /translation="MRLFIAVDLNSQNRDALAKLQTRLKKADTDVKWIEPKNIHLTLK
                     FLGEVTEENIPKIISAIKESIQGIQPFSLEIINLGVFPSLEYPRVIWAGIEKGKEDLK
                     KLAERVEAAMLKLKFPKEKRGFSEHLTLGRVRSSKNKNNLIQQLSQTSFPTLRQDIAA
                     VILYQSTLTPQGPIYEKLGEASLQKI"
     gene            complement(1995..2462)
                     /locus_tag="VJA84_04330"
     CDS             complement(1995..2462)
                     /locus_tag="VJA84_04330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004556239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CinA family protein"
                     /protein_id="HLD41387.1"
                     /translation="MLIEEKLLNSLQAKKLTLSLAESCTGGLLAHRVTNIPGSSKTFL
                     LGITAYANSAKCRLLKIPEKTIQNYGAVSRPTARLMAEGARRLGGSDLGAGLTGIAGP
                     AGASKDKPVGTVFIAVSSSRKTLVKKFHFRGSRLRIKKQAADKAIQMLLEAIK"
     regulatory      2524..2691
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00050"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="FMN riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="flavin mononucleotide"
                     /db_xref="RFAM:RF00050"
     gene            2847..4073
                     /locus_tag="VJA84_04335"
     CDS             2847..4073
                     /locus_tag="VJA84_04335"
                     /EC_number="3.5.4.25"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013120642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003935 - GTP cyclohydrolase II activity
                     [Evidence IEA];
                     GO_function: GO:0008686 -
                     3,4-dihydroxy-2-butanone-4-phosphate synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP
                     cyclohydrolase II"
                     /protein_id="HLD41388.1"
                     /translation="MKCQFNSIEEIIREIKSGKMVIVIDDESRENEGDLLMAAQAAVP
                     EKINFMAKFGRGLICVPMTNQRLEALGLHPMINFLPHEAAKGYEDRFQTAWRISVDAR
                     YGITTGISAADRAHTVKVLIDERSKPQDLIRPGHIFPLAAKEGGVLVRAGHTEAAVDL
                     ARMSGLSPAGVICEIMNDDGSMSRTPELIAFAKAHKLKICTIASLIEYRRKKEILVKK
                     IEETKLPTEYGEFRLLLYQSLIDRSHHLALVKGEFKKEEPVLVRVHSSCLTGDIFSSL
                     RCDCGEQLRKAMQLVQSEGKGIIIYMNQEGRGIGLANKIQAYALQDKGMDTVEANEAL
                     GFPADLRDYGIGAQILADLGARKLRLLTNNPRKIIGLEGYDLKIVERISLQIKPTKVN
                     KNYLKTKKEKLGHLLS"
     gene            4209..4679
                     /gene="ribE"
                     /locus_tag="VJA84_04340"
     CDS             4209..4679
                     /gene="ribE"
                     /locus_tag="VJA84_04340"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013120641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009349 - riboflavin synthase complex
                     [Evidence IEA];
                     GO_function: GO:0000906 - 6,7-dimethyl-8-ribityllumazine
                     synthase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HLD41389.1"
                     /translation="MIKTVEGNLIAKGKRFVIAASRFNDFITKELISGCVDTLARHGA
                     EKEKIQLVMVPGAFEIPLIAKKLALSKKYDAVICLGAVIRGATPHFEYVASEAAKGVA
                     QVSLESGIPVVFGIITADTIEQAIERAGTKDGNKGKDAAVSAIEMVNLIRELGK"
     gene            4679..5089
                     /gene="nusB"
                     /locus_tag="VJA84_04345"
     CDS             4679..5089
                     /gene="nusB"
                     /locus_tag="VJA84_04345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007417529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HLD41390.1"
                     /translation="MRKRTEAREYALQLLYKYDITAEPVTELDLFWVEDKEIAPPVND
                     FALQLVSGAIKHQEQIDKKISGFAANWELKRMAAVDRNVLRLGAFELLYLEDIPAKVS
                     INEAVDLAKKYSGEEAGKFVNGILDSIKKDCGKS"
     gene            5094..5909
                     /locus_tag="VJA84_04350"
     CDS             5094..5909
                     /locus_tag="VJA84_04350"
                     /inference="COORDINATES: protein motif:HMM:NF014826.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PHP domain-containing protein"
                     /protein_id="HLD41391.1"
                     /translation="MKYADLHIHTNFSDGTFSPAQIVDLAKKEGLNCISIADHDSLEA
                     YKNLPPQDEIEIITGIELTSDINNSEAHILGYFVDCSLPWFQEKLADIRQARIERMAL
                     MCAKLTDLGMIISVDEVLKFAGHSCVGRLHLARLMAKKGFIANTQEAFNRYIGDNGPV
                     YVSKFRLKPVEAIELVLKAKGVAVLAHPYSLPNQDLIPEFIQAGLRGIEAVYPEHTSA
                     QVERYKRLAYKYGICVSGGSDCHGQAKPEVRIGMVKLPYSFVERLKEELNEYP"
     gene            5896..>6513
                     /gene="ribD"
                     /locus_tag="VJA84_04355"
     CDS             5896..>6513
                     /gene="ribD"
                     /locus_tag="VJA84_04355"
                     /EC_number="1.1.1.193"
                     /EC_number="3.5.4.26"
                     /inference="COORDINATES: protein motif:HMM:TIGR00326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008703 -
                     5-amino-6-(5-phosphoribosylamino)uracil reductase activity
                     [Evidence IEA];
                     GO_function: GO:0008835 -
                     diaminohydroxyphosphoribosylaminopyrimidine deaminase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     diaminohydroxyphosphoribosylaminopyrimidine
                     deaminase/5-amino-6-(5-phosphoribosylamino)uracil
                     reductase RibD"
                     /protein_id="HLD41392.1"
                     /translation="MNTPEYFMRRARDLALKAEGQTFPNPLVGALVVKGGKIIAQGYH
                     QKAGLHHAEVEALEAAGKRALGADLYVTLEPCTHYGKTPPCVDRILEAGIKRVFAGMI
                     DPNPLNNGKGIKLLREHGIKTECGLLEAELRKINQPFLKYITRKIPYVTVKVGQSLDG
                     KIALKTGESQWITETASREYSHSLRRLYDGIMVGVNTVIRDNPFLE"
BASE COUNT         1609 a         1414 c         1814 g         1676 t
ORIGIN      
        1 ttctttgatt gtgggtttcc cgggggagac ggatagggag tttaaggaat tatttaaatt
       61 tgtccgggaa cagaggtttg agcggctggg ggtattcaag tattcccggg aagaaggaac
      121 cccggccttt ggataccaaa accagatacc ggagaaagtc aagcaggcgc gttttgacga
      181 cttgatgcgc ctccagcagg agatttctct ggagtttaat cagggtttct tgggcaagga
      241 aacagaggta ttgattgacg agaaggagtc ggaaggggtt tatctgggcc ggatgggcat
      301 tgacgccccg gatgtagatg gctcggtcta tgtgcgcgcg gcgaagagct taaaaccggg
      361 agattttgtc aaggtgaaaa ttaccgatat ttacgaatat gatttagccg gggagttatg
      421 aatttaccta atcaacttac catattaaga ataatcctga ccgcgttttt tgtctttttt
      481 gtctttatcc cgggattggc ttttaaggtc ttggctttag cggttttttc ctgcgccgcc
      541 ctgaccgact ggttagatgg taagattgcc aagagccgca atctgataac cgatttcggc
      601 aagattatgg accctatagc cgataagatc ctggtcctgg gggctttttt gagttttatc
      661 cagttacagc ttatcccggc ctggaccgtg gtggtgatta tcggccggga gtcggcaatc
      721 acctctttgc ggttttttgc cttatccaag ggcagggtta tcgccgcctc caaaggaggc
      781 aaatataaga cggtttccca gatggcggcc atcttcatta tcctgatttc cctgattttc
      841 aaggaggcat ttaaaatagg gtgtttgtca ttgtgtccgg aatttgacag gtatgccggg
      901 atagtcgtgt atctgtcaat gctggttacg gtaatcttaa ccctgatttc aggggtttcc
      961 tatatttggg ataaccggat gctttttagc gaggctaaag atgaaaaata atatttctga
     1021 aggcctgatc aggctgatca gcagtatgtt ttatatcggc tatagcccgt ttctccccgg
     1081 gaccctggct tctttggccg ggttcctggc ctatgtgttt tttgtccggg ggaatatgat
     1141 ttttcatctg gttttggtcg ttctctgcac cgttataggt ttcgcgttat ccgataaggc
     1201 cgagaagctg tttaagcgca aagacgcccg tcagatcgtg attgatgact ttaacgggat
     1261 gcttatcggt ctgttattcc tgccgtataa cctgaatctg gcagtgattg ggtttatcgt
     1321 ctttcgggtg atggacgggt taaagcctta ccctatctat aaaatagata agtggaaggg
     1381 ggccctgggg attatggggg atgatatcct ggccggggtc tataccaata tcattcttca
     1441 gattttctgg aggctggctt cgcctaactt ctcatagatt gggccttgcg gggtaagtgt
     1501 gctctggtag aggatgaccg cggcaatatc ctggcgcagg gtagggaaag aggtttggct
     1561 tagctgttgg atgagattat ttttgttttt acttgagcgg acccggccca gggtaaggtg
     1621 ttcggaaaat cccctttttt ctttaggaaa cttcaattta agcatagccg cttccacgcg
     1681 ctcggctaat tttttcaggt cttctttgcc tttttcaatc ccggcccaga ttaccctggg
     1741 atattccagg ctgggaaata cccccaaatt tattatttct aagctgaaag gttgaattcc
     1801 ctggatagac tcttttatcg cggagattat tttagggata ttttcttctg ttacctcacc
     1861 taagaatttc agggtcagat ggatattttt aggctcaatc cactttacat ccgtatccgc
     1921 cttttttaat cgcgtctgta atttagccaa ggcgtctctg ttttggctgt ttaaatcaac
     1981 ggcaataaat aatctcattt gattgcctct aagagcattt ggattgcttt atcggcggcc
     2041 tgttttttta tccgcaggcg gcttcctctg aaatggaatt tcttaaccag ggtttttctt
     2101 gatgagctta ccgcgataaa gaccgtgcct acaggtttat ctttactcgc gcctgcgggt
     2161 ccggcaatgc cggttaagcc tgctcctaaa tccgaacctc ccaacctgcg cgcgccctct
     2221 gccatcagcc tggcggttgg ccgggagact gccccatagt tttggattgt tttttcgggt
     2281 atcttaagta ggcggcattt agcggagtta gcgtaagcag ttatacccag gaggaatgtt
     2341 ttagagctcc ccgggatatt ggtaacgcgg tgcgccagca ggcctccggt gcaggattcg
     2401 gcaaggctta aggtgagttt cttggcctgg agggaattta acagtttttc ttctatcagc
     2461 ataagagaca ttatacccgc gcataaaacc cttgacaacc cttaatttgc tggtaaactt
     2521 aagactaatc ttcggggcag ggtgtaattc ccgaccggcg gtagcgcaga ggcgcacacc
     2581 ggcgcttcca ttagcgccgg gtgtaaaagt ccgcgagctt gcgcgggagc gtgagcatga
     2641 accggtgtga ttccggtacc gatagtatag tctagatgaa agaagattga atcgccaaag
     2701 gcgcgaaaat gtttatgccc cgtaagatta attacggggt tttttgttta agttgtcatt
     2761 gcgaggaacg tgagcgacga agcaatcccg gaatgatgag attgcttcgc ttcgctcgca
     2821 atgacgatta tttggatagg tgtgttatga aatgccaatt taactccata gaagagataa
     2881 tccgggagat aaaatccggg aagatggtca tcgtgattga tgacgaaagc cgggaaaatg
     2941 aaggcgacct gctgatggcc gcgcaggcgg ctgtcccgga gaagataaat tttatggcta
     3001 agttcggccg ggggcttatc tgcgtgccga tgaccaacca gcgcctggag gccctgggcc
     3061 tgcatccgat gatcaatttc ctgccccatg aagccgctaa gggttatgag gacagatttc
     3121 agactgcctg gaggatctcc gtggacgccc gctatggcat aactaccggg atttccgccg
     3181 ccgaccgggc ccataccgtg aaggttctga ttgatgaaag gtctaagcct caagacctga
     3241 tccgccccgg gcatatcttt cctttagccg ccaaagaagg aggggtattg gtccgggccg
     3301 gccacaccga ggcggcagtg gacctggccc ggatgagcgg gctgtccccg gcaggggtaa
     3361 tctgcgagat aatgaatgac gacggttcta tgagcaggac cccggagctg atagcattcg
     3421 ccaaggccca taaacttaag atctgcacta ttgcctcgct gatagaatac cggcgcaaga
     3481 aagaaatttt agttaaaaag attgaggaaa ccaaactgcc taccgaatac ggggaattca
     3541 ggcttttgtt gtatcagtcg ctgattgacc gctcacacca tttggccctg gttaaggggg
     3601 aatttaagaa agaagagccg gttttggtca gggtgcattc atcctgcctg actggagaca
     3661 tattctcttc cttgcgctgt gattgcggag aacaattaag aaaggcaatg caactggtcc
     3721 agtctgaagg caaggggatc atcatctata tgaaccagga aggaaggggc atcggactgg
     3781 ccaataaaat ccaggcctat gccctccagg acaaggggat ggacaccgtg gaggccaatg
     3841 aggccctggg gtttcccgcg gacctgcgcg attacgggat tggggcccag attttagcgg
     3901 acctgggggc gaggaaactg cgcctcttga ccaataatcc ccgcaagatc atcggcttgg
     3961 aaggatatga tttaaagata gtggaaagga tatccctgca gatcaagccg accaaggtga
     4021 ataagaatta tttgaagacc aagaaggaaa aattagggca tttgttaagt tgaaaaaatc
     4081 aagggtcaat agtctatggt cgatagccga tggttaacgg aaaaaagaaa cgaatgattg
     4141 ttgtctctag accatagact atcgactata gaccctttat tattgaccta taactgggag
     4201 gatgaaaaat gattaaaacg gttgagggga atttgatagc taaaggtaag cggtttgtca
     4261 ttgccgcaag ccggtttaac gattttatca ccaaagagct gatttccgga tgtgtggata
     4321 ccctggcgcg ccacggggcg gaaaaggaaa agatacaatt agtgatggtg ccgggggcgt
     4381 ttgaaatccc gctgattgcc aagaaattgg ccttgagcaa gaagtatgac gcggtgatct
     4441 gcctgggggc ggtcatccgg ggggccaccc cgcattttga gtatgtggcc tccgaggcgg
     4501 caaagggagt ggcccaggtt tctttggaga gcggcatccc ggtagtcttc gggataatta
     4561 ccgcggatac cattgaacag gccattgaac gcgccgggac caaagacggg aataagggca
     4621 aagacgcggc ggtttcggct attgagatgg tcaatcttat ccgggaatta ggtaaataat
     4681 gagaaaacgc actgaagcca gggagtatgc cctccagctg ttgtataaat atgatatcac
     4741 cgctgaaccg gttacggagc tggatctgtt ctgggtagag gataaggaga tagccccgcc
     4801 ggttaatgat tttgcccttc aattggtaag cggggccata aaacatcagg agcagattga
     4861 taagaagata agcggttttg ccgccaactg ggaactaaaa aggatggccg cggtggaccg
     4921 gaatgtgtta cggctgggcg cctttgaact gctttattta gaggatatcc ctgccaaggt
     4981 ttccataaac gaggccgtgg acctggctaa gaagtattcc ggcgaagagg ccggtaagtt
     5041 tgtaaacggc atattagaca gcatcaagaa agactgcggc aagagctgac atcatgaaat
     5101 atgccgacct gcacatccac accaattttt ccgacggcac atttagcccg gcccagatag
     5161 tagacttagc caagaaagaa gggctgaact gcatcagtat tgccgaccac gattcgcttg
     5221 aggcctataa aaacctcccc ccacaggatg agattgagat tatcaccggc atagagctta
     5281 cctcggatat taataacagc gaggcgcata tactgggtta ttttgtggat tgctctctgc
     5341 cctggttcca ggaaaaatta gccgatatcc gccaggcccg tattgagcgg atggctctta
     5401 tgtgcgcaaa gcttacggat ttgggtatga ttatatccgt ggatgaggtg ctcaagtttg
     5461 ccgggcattc ctgcgtggga agactgcact tagccaggtt aatggcgaaa aaaggtttta
     5521 ttgccaatac ccaggaggcc tttaaccgct atatcggaga caacggcccg gtatatgtct
     5581 ctaagttccg gctaaaaccg gtagaggcca ttgaactggt cttaaaggcc aagggggtcg
     5641 cggtcctggc tcatccctat agcctgccta atcaggattt gatcccggag tttatccagg
     5701 ccggactgcg ggggatagag gcggtttatc ctgaacatac ctcggcccag gtggagcgct
     5761 ataagagatt agcctataaa tacgggatat gcgtcagcgg cggatcagac tgccatgggc
     5821 aggctaagcc ggaggtcagg atagggatgg tgaaactccc ctatagtttt gtggagaggc
     5881 taaaagaaga gcttaatgaa tacccctgaa tattttatgc gccgggcaag ggatttggcc
     5941 ttaaaggccg agggccagac tttccctaat cctttagtcg gggcgttggt ggttaagggc
     6001 ggtaagatta tcgctcaagg ctatcaccaa aaggccggat tgcatcatgc cgaggttgag
     6061 gcgctggagg cggctggtaa gagggctctc ggcgcggacc tttatgtaac cctggagccc
     6121 tgcacccact atggcaaaac gccgccctgc gtggaccgga tattagaggc ggggataaaa
     6181 agggtttttg ccgggatgat tgaccccaat cctttaaaca acggcaaagg cataaagctc
     6241 ctgcgggaac acgggataaa gacggaatgc gggctcctgg aggctgaatt aagaaagatc
     6301 aaccagcctt tcttaaaata tataacccgc aagatacctt atgtcacggt taaggttgga
     6361 cagtctttag acggtaagat cgccttaaag accggcgagt cccagtggat taccgagact
     6421 gcctcccggg aatactccca tagcctgcgt cgcctttatg atgggataat ggtgggggtg
     6481 aatacggtga tccgggacaa tccctttttg gag
//
